Metagenome Family F025065

Basic Information
Family ID	F025065
Family Type	Metagenome
Number of Sequences	203
Average Sequence Length	54 residues
Representative Sequence	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDTMTSDGVE
Number of Associated Samples	97
Number of Associated Scaffolds	203

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	74.26 %
% of genes near scaffold ends (potentially truncated)	41.87 %
% of genes from short scaffolds (< 2000 bps)	81.77 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	No

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (66.502 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere (13.301 % of family members)
Environment Ontology (ENVO)	Unclassified (63.054 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (87.192 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80 1JGI24751J29686_101074722 2Ga0062593_1000340815 3Ga0062589_1017101963 4Ga0062591_1000648294 5Ga0062591_1009689563 6Ga0062591_1026768911 7Ga0062594_1002007711 8Ga0062594_1033019083 9Ga0065714_100470132 10Ga0065714_1006528612 11Ga0065714_101146971 12Ga0065714_101396802 13Ga0065714_103671702 14Ga0065714_105249021 15Ga0065712_100154865 16Ga0065712_100459482 17Ga0065712_1006958017 18Ga0065712_1007132912 19Ga0065712_102255321 20Ga0065712_102779274 21Ga0065712_104584762 22Ga0065715_105364581 23Ga0070676_115828861 24Ga0070690_1005204081 25Ga0070690_1011682772 26Ga0070670_10001098610 27Ga0070670_1000420388 28Ga0070670_1001775461 29Ga0070670_1003080352 30Ga0070670_1005603583 31Ga0070670_1007978943 32Ga0070670_1022632282 33Ga0070689_1020415551 34Ga0070687_1001785711 35Ga0070669_1000762916 36Ga0070669_1018865172 37Ga0070675_1000164734 38Ga0070675_1000431082 39Ga0070675_1004358133 40Ga0070675_1006928182 41Ga0070671_10000045123 42Ga0070671_1016431862 43Ga0070674_1013426462 44Ga0070674_1018044491 45Ga0070673_1006946263 46Ga0070673_1017618482 47Ga0070688_1001775556 48Ga0070688_1017203921 49Ga0070678_1007812393 50Ga0070662_1008637991 51Ga0068867_1013445122 52Ga0070685_103004671 53Ga0070685_103523883 54Ga0070685_107299071 55Ga0070707_1012497052 56Ga0070702_1006983793 57Ga0070702_1017524771 58Ga0068861_1012461691 59Ga0068870_107235122 60Ga0068863_1009774031 61Ga0068863_1014397162 62Ga0068858_1003192461 63Ga0068862_1008650162 64Ga0068862_1026535922 65Ga0075422_100191922 66Ga0075422_102740292 67Ga0097621_1004556931 68Ga0068871_1013152573 69Ga0068871_1022477792 70Ga0075425_1009873703 71Ga0075425_1026702031 72Ga0075434_1026167993 73Ga0111539_109676822 74Ga0105243_116561491 75Ga0111538_104229572 76Ga0105242_105658144 77Ga0105242_119745112 78Ga0105242_122729992 79Ga0105248_102368984 80Ga0105248_118108511 81Ga0105248_120969451 82Ga0105237_118255472 83Ga0105249_104792081 84Ga0105249_113861003 85Ga0134124_122693171 86Ga0134123_114665021 87Ga0134123_118291551 88Ga0105246_105766532 89Ga0157287_10229561 90Ga0157292_100695791 91Ga0157292_101553973 92Ga0157310_100196126 93Ga0164302_111569112 94Ga0157374_1002991812 95Ga0157374_102895293 96Ga0157374_105356292 97Ga0157374_114575191 98Ga0157374_117040531 99Ga0157374_118092032 100Ga0157374_124353331 101Ga0163162_107931153 102Ga0163162_131127842 103Ga0163162_131212261 104Ga0157375_101078031 105Ga0157375_104549973 106Ga0157375_112178752 107Ga0157375_122518962 108Ga0157375_124697412 109Ga0157375_132441622 110Ga0163163_101891693 111Ga0157377_102404735 112Ga0157379_113196782 113Ga0157376_1000129321 114Ga0157376_102571641 115Ga0157376_102580744 116Ga0157376_103335481 117Ga0157376_104313744 118Ga0157376_112593952 119Ga0157376_112939872 120Ga0157376_117327823 121Ga0157376_119943142 122Ga0163161_102804695 123Ga0163161_107788822 124Ga0163161_117485682 125Ga0173481_101179512 126Ga0173479_100554004 127Ga0247753_10225891 128Ga0247787_10282613 129Ga0247788_10119184 130Ga0247752_10717211 131Ga0247748_10342683 132Ga0247748_10471582 133Ga0247798_10028951 134Ga0247664_11292693 135Ga0207673_10110015 136Ga0207697_1000073114 137Ga0207697_100128937 138Ga0207697_100305356 139Ga0207697_100450825 140Ga0207697_101577401 141Ga0207697_103757823 142Ga0207682_103102112 143Ga0207642_105461284 144Ga0207710_104213453 145Ga0207680_102863741 146Ga0207643_100232428 147Ga0207643_101024685 148Ga0207643_101966302 149Ga0207662_101601533 150Ga0207662_107169343 151Ga0207662_112691371 152Ga0207681_100661471 153Ga0207650_1000139125 154Ga0207650_100542646 155Ga0207650_101697442 156Ga0207650_101961933 157Ga0207650_102425141 158Ga0207650_111557192 159Ga0207650_113401074 160Ga0207659_100261733 161Ga0207659_100992455 162Ga0207659_102912474 163Ga0207659_112869843 164Ga0207659_117035641 165Ga0207687_119482792 166Ga0207701_101029077 167Ga0207701_107566041 168Ga0207644_1000037632 169Ga0207686_102606743 170Ga0207686_103697833 171Ga0207686_111173151 172Ga0207709_1000157326 173Ga0207709_100306871 174Ga0207709_103279722 175Ga0207670_105955504 176Ga0207670_113330544 177Ga0207691_100946475 178Ga0207711_102062644 179Ga0207711_105791664 180Ga0207711_106212191 181Ga0207689_104214353 182Ga0207689_113717041 183Ga0207651_106115593 184Ga0207651_119326612 185Ga0207712_104459813 186Ga0207658_108842822 187Ga0207677_113283311 188Ga0207641_102652554 189Ga0207641_106840252 190Ga0207641_113024724 191Ga0207641_115738431 192Ga0207641_120411881 193Ga0207648_100995712 194Ga0207648_112192752 195Ga0207676_100367701 196Ga0207676_101133132 197Ga0207676_104935655 198Ga0207676_114941821 199Ga0207683_106015333 200Ga0207683_114537991 201Ga0207428_1000188727 202Ga0268266_107373001 203Ga0307468_1017577602
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80 1JGI24751J29686_101074722 2Ga0062591_1000648294 3Ga0062594_1002007711 4Ga0065714_103671702 5Ga0065714_105249021 6Ga0065712_102779274 7Ga0097621_1004556931 8Ga0247753_10225891 9Ga0207686_111173151 10Ga0207709_1000157326
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80 1JGI24751J29686_101074722 2Ga0062591_1000648294 3Ga0062594_1002007711 4Ga0065714_103671702 5Ga0065714_105249021 6Ga0065712_102779274 7Ga0097621_1004556931 8Ga0247753_10225891 9Ga0207686_111173151 10Ga0207709_1000157326
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 72.73% β-sheet: 0.00% Coil/Unstructured: 27.27%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Pfam ID	Name	% Frequency in 203 Family Scaffolds
PF04404	ERF	13.79
PF01381	HTH_3	3.45
PF09588	YqaJ	3.45
PF13392	HNH_3	2.96
PF02831	gpW	1.97
PF11300	DUF3102	1.97
PF05772	NinB	1.97
PF01520	Amidase_3	0.99
PF12844	HTH_19	0.99
PF01844	HNH	0.99

COG ID	Name	Functional Category	% Frequency in 203 Family Scaffolds
COG0860	N-acetylmuramoyl-L-alanine amidase	Cell wall/membrane/envelope biogenesis [M]	0.99
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	0.49
COG3756	Uncharacterized conserved protein YdaU, DUF1376 family	Function unknown [S]	0.49

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	33.50 %
Unclassified	root	N/A	66.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	33.00 %
Unclassified	root	N/A	66.50 %
Viruses	superkingdom	All Organisms → Viruses	0.49 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	33.00 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.49 %
Unclassified	root	N/A	66.50 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.49 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	27.59 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.48 %
Unclassified	root	N/A	66.50 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	21.18 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.48 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.99 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.49 %
Unclassified	root	N/A	66.50 %

Name	Rank	Taxonomy	Distribution
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.48 %
Caulobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	0.49 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	18.72 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.49 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.99 %
Unclassified	root	N/A	66.50 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.99 %

Name	Rank	Taxonomy	Distribution
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.49 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	0.49 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	14.78 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.48 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	0.49 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.99 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.49 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.49 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.49 %
Unclassified	root	N/A	66.50 %

Name	Rank	Taxonomy	Distribution
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.49 %
Asticcacaulis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Asticcacaulis	0.49 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	14.78 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.48 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.99 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.49 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.49 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.49 %
Skermanella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella	0.49 %
Unclassified	root	N/A	66.50 %

Name	Rank	Taxonomy	Distribution
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.49 %
Bradyrhizobium pachyrhizi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium pachyrhizi	0.49 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.48 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.99 %
Microvirga mediterraneensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga mediterraneensis	0.49 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.49 %
Rhodoplanes piscinae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes piscinae	0.49 %
Skermanella rosea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella → Skermanella rosea	0.49 %
Unclassified	root	N/A	66.50 %
unclassified Asticcacaulis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Asticcacaulis → unclassified Asticcacaulis	0.49 %

Name	Rank	Taxonomy	Distribution
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.49 %
Asticcacaulis sp. YBE204	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Asticcacaulis → unclassified Asticcacaulis → Asticcacaulis sp. YBE204	0.49 %
Bradyrhizobium pachyrhizi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium pachyrhizi	0.49 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.48 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.99 %
Microvirga mediterraneensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga mediterraneensis	0.49 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.49 %
Rhodoplanes piscinae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes piscinae	0.49 %
Skermanella rosea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella → Skermanella rosea	0.49 %
Unclassified	root	N/A	66.50 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002459\|JGI24751J29686_10107472	Not Available	584	Open in IMG/M
3300004114\|Ga0062593_100034081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2949	Open in IMG/M
3300004156\|Ga0062589_101710196	Not Available	628	Open in IMG/M
3300004643\|Ga0062591_100064829	All Organisms → cellular organisms → Bacteria → Proteobacteria	2174	Open in IMG/M
3300004643\|Ga0062591_100968956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	805	Open in IMG/M
3300004643\|Ga0062591_102676891	Not Available	527	Open in IMG/M
3300005093\|Ga0062594_100200771	Not Available	1390	Open in IMG/M
3300005093\|Ga0062594_103301908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	507	Open in IMG/M
3300005288\|Ga0065714_10047013	Not Available	624	Open in IMG/M
3300005288\|Ga0065714_10065286	All Organisms → cellular organisms → Bacteria → Proteobacteria	11155	Open in IMG/M

Showing 1 to 10 of 202 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	22.17%
Host-Associated	Host-Associated	77.83%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	77.83%
Terrestrial	Environmental → Terrestrial	22.17%

Habitat	Taxonomy	Distribution
Rhizoplane	Host-Associated → Plants → Rhizoplane	28.08%
Rhizosphere	Host-Associated → Plants → Rhizosphere	47.78%
Roots	Host-Associated → Plants → Roots	1.97%
Soil	Environmental → Terrestrial → Soil	22.17%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	19.70%
Loam	Environmental → Terrestrial → Soil → Loam	8.37%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.97%
Soil	Host-Associated → Plants → Rhizosphere → Soil	20.69%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	27.09%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	13.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.90%

Habitat	Taxonomy	Distribution
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.37%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.99%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.99%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	27.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	20.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	19.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.90%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	4.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.48%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.49%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.49%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	3.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.48%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.99%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.49%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	11.33%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	6.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	6.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	5.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	5.42%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.48%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.48%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.49%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	13.30%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	7.39%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	6.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	4.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.49%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.49%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.48%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002459	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005288	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1	Host-Associated	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M

Showing 1 to 10 of 97 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24751J29686_101074722	3300002459	Corn, Switchgrass And Miscanthus Rhizosphere	MTPKQHFRRLQLRLEIAEFGMGMPLDRERVKELREQVEQARKDAELD
Ga0062593_1000340815	3300004114	Soil	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDTMTSDGAEG*
Ga0062589_1017101963	3300004156	Soil	MTPKQHFRALQIRLEIAEFGMAMPLDRERVKELREQVEQARKDAAC
Ga0062591_1000648294	3300004643	Soil	MTPKQHFRRLQLRLEIAEFGMGMPLDRERVKELREQVEQARKDAEHMDSDGFNEQAGGY*
Ga0062591_1009689563	3300004643	Soil	MTPKQHFRHLQFKLEIAEFGMGMPYDGERVKELREQVEQARKEAEHMDSDGFTEQAGGY*
Ga0062591_1026768911	3300004643	Soil	MTPKQHFRALQIRLEIAEFGMGMPYDGERVKELREQVEQARKDAAC
Ga0062594_1002007711	3300005093	Soil	IRLEIAEFGMGMPLDRERVKELREQVEQARQDAAEALVEAELARITSDGAE*
Ga0062594_1033019083	3300005093	Soil	IAEFGMGMPLDRERVKELRAQVEQARQDAAEALVEAELDRITSDGVE*
Ga0065714_100470132	3300005288	Miscanthus Rhizosphere	MTPKQHFRALQIRLEIAEXGMGMPLDRERVKELREQVEQARKDAEHMDSDGFDEQAGGY*
Ga0065714_1006528612	3300005288	Miscanthus Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARQDAAEALVEAELARITSDGAE*
Ga0065714_101146971	3300005288	Miscanthus Rhizosphere	MTPKQHFRALQLRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDTMTSDG
Ga0065714_101396802	3300005288	Miscanthus Rhizosphere	MTPKQHFRRLQLRLEIAEYGMGMPLDRERVKELREQVEQARKEAELDTMTSDGVE*
Ga0065714_103671702	3300005288	Miscanthus Rhizosphere	MTPKQHFRRLQLKLEIAEFGMALPRDEERVRELRAQLEQAKKDAADEVE
Ga0065714_105249021	3300005288	Miscanthus Rhizosphere	MTPKQHFRRLQFKLELAEFGMAMPYDADRVKELREQVEQARKDAELDTMTSDGNE*
Ga0065712_100154865	3300005290	Miscanthus Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDEVQS*
Ga0065712_100459482	3300005290	Miscanthus Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPYDGERVKELREQVEQARKDADEEVQS*
Ga0065712_1006958017	3300005290	Miscanthus Rhizosphere	MTPKQHFRRLQLKLEIAEFGMALPRDEERVRELRAQLEQAKKDAADEVEQ*
Ga0065712_1007132912	3300005290	Miscanthus Rhizosphere	MTPKQHFRALQIRLEIAEFGMAMPLDRERVKELREQVEQARKDAELDASDGAE*
Ga0065712_102255321	3300005290	Miscanthus Rhizosphere	MTPKQHFRRLQLKLEIAEFGMGMPLDREHVKELREQVEQARKDAEHMDSDGFDEQMGGY*
Ga0065712_102779274	3300005290	Miscanthus Rhizosphere	HFRRLQLRLEIAEFGMGMPYDAERVKELREQVEQARKDAEQDSDGEVVS*
Ga0065712_104584762	3300005290	Miscanthus Rhizosphere	MTPKQHFRALQIRLEIAEWGMGMPLDRERVKELREQVEQARKDAELDTMTSDGNE*
Ga0065715_105364581	3300005293	Miscanthus Rhizosphere	MTPKQHFRRLQLRLEIAEFGMGMPLDRERVKELREQVEQARKDAEHMDSDGF
Ga0070676_115828861	3300005328	Miscanthus Rhizosphere	AKTGDQMTPKQHFRALQIRLEIAEFGMAMPLDRERVKELREQVEQARKDAELDTMTSDGVE*
Ga0070690_1005204081	3300005330	Switchgrass Rhizosphere	MTPKQHFRSLQIRLEIAEFGMGMPLDRERVKELRAQVEQARQDAAEALVEAELDRITSDGVE*
Ga0070690_1011682772	3300005330	Switchgrass Rhizosphere	MTPKQHFRRLQLRLEIAEFGMGMPLDRERVKELREQVEHARKEAEHMDSDGFTEQQGGY*
Ga0070670_10001098610	3300005331	Switchgrass Rhizosphere	MTPKQHFRRLQLRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDAMTSDGVE*
Ga0070670_1000420388	3300005331	Switchgrass Rhizosphere	MTPKQHFRALQFKLEIAEFGMGMPLDRERVKELREQVEQARKDAELDTITSDGVE*
Ga0070670_1001775461	3300005331	Switchgrass Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAEL
Ga0070670_1003080352	3300005331	Switchgrass Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAESVIEDDQ*
Ga0070670_1005603583	3300005331	Switchgrass Rhizosphere	MTPKQHFRALQIRLEIAEYGMGMPLDRKRVKELREQVEQARKDAELDTMTSDGVE*
Ga0070670_1007978943	3300005331	Switchgrass Rhizosphere	MTPKQHFRRLQLRLEIAEWGMGMPLDRERVKELREQVEQARK
Ga0070670_1022632282	3300005331	Switchgrass Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDAITSDGTEP*
Ga0070689_1020415551	3300005340	Switchgrass Rhizosphere	DMTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDTMTSDGVEP*
Ga0070687_1001785711	3300005343	Switchgrass Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRECVKELREQVEQARKDAELDTMTSDGMEQS*
Ga0070669_1000762916	3300005353	Switchgrass Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDTMTSDGVE*
Ga0070669_1018865172	3300005353	Switchgrass Rhizosphere	MENDMTPKQHFRRLQLRLEIAEFGMGMPYDAERVKELREQVEQARKDAE
Ga0070675_1000164734	3300005354	Miscanthus Rhizosphere	VTPKQHFRRLQLKLEIAEFGMGMPLDRERVKELREQVEQARKDAELDAMTSDGVE*
Ga0070675_1000431082	3300005354	Miscanthus Rhizosphere	MTPKQHFRRLQLRLEIAEYGMGMPLDRERVKELREQVEQARKDAEHMDSDGFTEQAGGY*
Ga0070675_1004358133	3300005354	Miscanthus Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAEHMDSDGFNEQQGGY*
Ga0070675_1006928182	3300005354	Miscanthus Rhizosphere	MTPKQHFRRLQFKLEIAEFGMGMPLDRERVKELREQVEQARKDAEHMDSDGFNEQAGGY*
Ga0070671_10000045123	3300005355	Switchgrass Rhizosphere	MTPKQHFRSLQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDTMTSDGTEP*
Ga0070671_1016431862	3300005355	Switchgrass Rhizosphere	MTPKQHFRRLQFKLELAEFGMAMPYDADRVKELREQVEQARKDAELDTMTSDGVE*
Ga0070674_1013426462	3300005356	Miscanthus Rhizosphere	MTPKQHFRRLQFKLEIAQYGMGMPYDAERVKELREQVEQARKDAELDTMTSDGVE*
Ga0070674_1018044491	3300005356	Miscanthus Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDTMTSDG
Ga0070673_1006946263	3300005364	Switchgrass Rhizosphere	MTPKQHFRALQLRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDTMTSDGSE*
Ga0070673_1017618482	3300005364	Switchgrass Rhizosphere	MTPKQHFRALQIRLEIAEFGMALPLDRERVKELREQVEQARKDAELDTMTSDGMEQS*
Ga0070688_1001775556	3300005365	Switchgrass Rhizosphere	MTPKQHFRALQIRLEIAEFGMAMPLDRERVKELREQVEQARKDAELD
Ga0070688_1017203921	3300005365	Switchgrass Rhizosphere	MTPKQHFRALQIRLEIAEFGMALPLDRERVKELREQVEQARKDAELDTMTSD
Ga0070678_1007812393	3300005456	Miscanthus Rhizosphere	MTPKQHFRRLQLRLEIAEFGMGMPYDAERVKELREQVEQARKDAEQDSDGEVVS*
Ga0070662_1008637991	3300005457	Corn Rhizosphere	TPKQHFRALQIRLEIAEFGMGMPYDAERVKELREQVEQARQDAAEALVEAELDRITSDGVE*
Ga0068867_1013445122	3300005459	Miscanthus Rhizosphere	MTPKQHFRALQIRLEIAEFGMAMPLDRERVKELREQVEQARKDAELDTMTSDGVE*
Ga0070685_103004671	3300005466	Switchgrass Rhizosphere	MTPKQHFRRLQLRLEIAEFGMGMPYDAERVKELREQVEQARKDAEHMDSDGF
Ga0070685_103523883	3300005466	Switchgrass Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDTMTSDGVEP*
Ga0070685_107299071	3300005466	Switchgrass Rhizosphere	GATDMTPKQHFRALQIRLEIAEFGMALPRDEERVRSLRAQLEQAKKDAEEEVEQ*
Ga0070707_1012497052	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MTPKQHFRSLQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDTMTSDGAEG*
Ga0070702_1006983793	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRDRVKELREQVEQARKDAELDTMTSDGVE*
Ga0070702_1017524771	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MTPKQHFRALQIRLEIAEFGMAMPLDRERVKELREQVEQARKDAE
Ga0068861_1012461691	3300005719	Switchgrass Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQAR
Ga0068870_107235122	3300005840	Miscanthus Rhizosphere	MTPKQHFRALQLRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDTMTSDGVE*
Ga0068863_1009774031	3300005841	Switchgrass Rhizosphere	HFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDGMTSDGVE*
Ga0068863_1014397162	3300005841	Switchgrass Rhizosphere	MTPKQHFRALQIRLEIAEFGMALPLDRERVKELREQVEQARKDAELMDSDGFDEQQGGY*
Ga0068858_1003192461	3300005842	Switchgrass Rhizosphere	MTPMQHFRALQIRLEIAEFGMGMPYDGERVKELREQVEQARKD
Ga0068862_1008650162	3300005844	Switchgrass Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDAMTSDGVE*
Ga0068862_1026535922	3300005844	Switchgrass Rhizosphere	MTPKQHFRALQLRLEIAEFGMGMPLDRERVKELREQVEQARKDAELD
Ga0075422_100191922	3300006196	Populus Rhizosphere	MTPKQHFRRLQLRLEIAEYGMGMPLDRERVKELREQVEQARKDAERMDSDGFTEQAGGY*
Ga0075422_102740292	3300006196	Populus Rhizosphere	MTPKQHFRRLQLKLEIAEFGMGMPLDREHVKELREQVEQARKDAEHMDSDGFTEQAGGY*
Ga0097621_1004556931	3300006237	Miscanthus Rhizosphere	MTPKQHFRALQIRLEIAEFGMAMPLDRERVKELREQVE
Ga0068871_1013152573	3300006358	Miscanthus Rhizosphere	MTPKQHFRRLQFKLEIAEFGMGMPFDRERVNELREQVEQARKEAERMDSDGFNEQAGGY*
Ga0068871_1022477792	3300006358	Miscanthus Rhizosphere	MTPKQHFRRLQLRLEIAEFGMGMPLDRERVKELREQVEQARKDAEHMDSDGFNEQMGGY*
Ga0075425_1009873703	3300006854	Populus Rhizosphere	MTPKQHFRALQFKLEIAEFGMALPYDAERVKELREQVEQARKDAELDTMTSDGVEP*
Ga0075425_1026702031	3300006854	Populus Rhizosphere	VTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAE
Ga0075434_1026167993	3300006871	Populus Rhizosphere	MTPKQHFRRLQLKLEIAEFGMGMPLDREHVKELREQVEQARKDAE
Ga0111539_109676822	3300009094	Populus Rhizosphere	VTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDAMTSDGVE*
Ga0105243_116561491	3300009148	Miscanthus Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRDRVKELREQVEQARKDAELDT
Ga0111538_104229572	3300009156	Populus Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELRDQVEQARKEAEHMDSDGFTEQAGGY*
Ga0105242_105658144	3300009176	Miscanthus Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKEAEHMDSD
Ga0105242_119745112	3300009176	Miscanthus Rhizosphere	MTPKQHFRALQIRLEIAEFGMALPRDEELVRSLRAQLEQAKKDAAEEVEQ*
Ga0105242_122729992	3300009176	Miscanthus Rhizosphere	TPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDVELDAIISDGTEP*
Ga0105248_102368984	3300009177	Switchgrass Rhizosphere	MTPKQHFRALQILLEIAEFEMGMPLDRECVKELREQVEQARKDAELDAMTSDGAEQ*
Ga0105248_118108511	3300009177	Switchgrass Rhizosphere	MTPKQHFRHLQFKLEIAEFGMGMPYDGERVKELREQVEQARKEAEHMDSDGFTEQ
Ga0105248_120969451	3300009177	Switchgrass Rhizosphere	MTPKQHFRALQIRLEIAEFGMALPRDEELVRLLRAQLEQARKDAAEEVEQ*
Ga0105237_118255472	3300009545	Corn Rhizosphere	MTPKQHFRALQLRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDASDGAE*
Ga0105249_104792081	3300009553	Switchgrass Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDTMTSDGGE*
Ga0105249_113861003	3300009553	Switchgrass Rhizosphere	VTPKQHFRALQIRPEIAEFGMGMPLDRERVKELREQVEQARKDVELDAIISDGTEP*
Ga0134124_122693171	3300010397	Terrestrial Soil	ALDRSQPDKEGVMTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKEAEHMDSDGFTEQAGGY*
Ga0134123_114665021	3300010403	Terrestrial Soil	MTPKQHFRRLQLKLEIAEFGMGMPLDREHVKELREQVEQARKDAEHMDSDGFDEQMG
Ga0134123_118291551	3300010403	Terrestrial Soil	MTPKQHFRALQLRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDTMTSDGAEG*
Ga0105246_105766532	3300011119	Miscanthus Rhizosphere	DMTPKQHFRRLQLKLEIAEFGMGMPLDREHVKELREQVEQARKDAEHMDSDGFDEQMGGY
Ga0157287_10229561	3300012885	Soil	TPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAEHMDSDGFNEQAGGY*
Ga0157292_100695791	3300012900	Soil	MTPKQHFRALQIRLEIAEFGMAMPLDRERVKELREQVEQARKDAA
Ga0157292_101553973	3300012900	Soil	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAELMDSDGFDEQQG
Ga0157310_100196126	3300012916	Soil	MTPKQHFRSLQIRLEIAEYGMGMPLDRERVKELREQVEQARKD
Ga0164302_111569112	3300012961	Soil	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDSMTSDGRE*
Ga0157374_1002991812	3300013296	Miscanthus Rhizosphere	MTPKQHFRALQIRLEIAECGMGMPLDRERVKELREQVEQARKDA
Ga0157374_102895293	3300013296	Miscanthus Rhizosphere	MENDMTPKQHFRRLQLKLEIAEFGMALPRDEERVRELRAQLEQAKKDAADEVEQ*
Ga0157374_105356292	3300013296	Miscanthus Rhizosphere	VTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDVELDAIISDGTEP*
Ga0157374_114575191	3300013296	Miscanthus Rhizosphere	MTPKQHFRALQIRLESAEYGMALPRDEERVRSLRAQLEQAKKDAAEEVKQ*
Ga0157374_117040531	3300013296	Miscanthus Rhizosphere	TGDQMTPKQHFRALQIRLEIAEFGMAMPLDRERVKELREQVEQARKDAELDASDGAE*
Ga0157374_118092032	3300013296	Miscanthus Rhizosphere	MTPKQHFRRLQFKLEIAEFGMGMPLDRERVKELREQVEQARKDAELLDSDGFNEQQGGY*
Ga0157374_124353331	3300013296	Miscanthus Rhizosphere	MTPKQHFRRLQFKLELAEFGMAMPYDADRVKELREQVEQARKDAELDTMTSD
Ga0163162_107931153	3300013306	Switchgrass Rhizosphere	MTPKQHFRHLQFKLEIAEFGMGMPYDGERVKELREQVEQARKEAEHMDRDGFTEQAGGY*
Ga0163162_131127842	3300013306	Switchgrass Rhizosphere	MTPKQHFRSLQLRLEIAEFGMALPRDEELVRLLRAQLEQARKDAAEEVEQ*
Ga0163162_131212261	3300013306	Switchgrass Rhizosphere	MPPNQHFRALQIRLEIAEWGMGMPLDRERVKELREQVEQARKDAELDTMTSDGNE*
Ga0157375_101078031	3300013308	Miscanthus Rhizosphere	MTPKQHFRALQLRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDTMTSD
Ga0157375_104549973	3300013308	Miscanthus Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDTITSDGVE*
Ga0157375_112178752	3300013308	Miscanthus Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELRAQVEQARQDAAEALVEAELDRITSDGVE*
Ga0157375_122518962	3300013308	Miscanthus Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRECVKELREQVEQARKDAELD
Ga0157375_124697412	3300013308	Miscanthus Rhizosphere	MTPKQHFRRLQLRLEIAEYGMGMPLDRDRVKELREQVEQARKDAEHMDSDGFNEQAGGY*
Ga0157375_132441622	3300013308	Miscanthus Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPYDGERVKELREQVEQARKEAEH
Ga0163163_101891693	3300014325	Switchgrass Rhizosphere	MTPKQHFRRLQLRLEIAEWGMGMPLDRERVKELREQVEQARKEAEHMDSDGFNEQQGGY*
Ga0157377_102404735	3300014745	Miscanthus Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKD
Ga0157379_113196782	3300014968	Switchgrass Rhizosphere	MTPKQHFRSLQIRLEIAEFGMALPRDEELVRSLRAQLEQAKKDAEQEVEQ*
Ga0157376_1000129321	3300014969	Miscanthus Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAELATSDGAE*
Ga0157376_102571641	3300014969	Miscanthus Rhizosphere	MTPKQHFRRLQLRLEIAEFGMGMPLDRERVKELREQVEQARK
Ga0157376_102580744	3300014969	Miscanthus Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRECVKELREQVEQARKDAELDAMTSDGAEQ*
Ga0157376_103335481	3300014969	Miscanthus Rhizosphere	MTPKQHFRRLQFKLEIAEFGMGMPFDRERVNELREQVEQARKAAELMDSDGFDEQQGGY*
Ga0157376_104313744	3300014969	Miscanthus Rhizosphere	MTPKQHFRRLQLRLEIAEFGMGMPLDRERVKELREQVEQARKDAEHMDSDGFNEQMGG*
Ga0157376_112593952	3300014969	Miscanthus Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAEHMDSDGFDEQAGGY*
Ga0157376_112939872	3300014969	Miscanthus Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDTMTSDGSE*
Ga0157376_117327823	3300014969	Miscanthus Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAEEAERA
Ga0157376_119943142	3300014969	Miscanthus Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKDLREQVE*
Ga0163161_102804695	3300017792	Switchgrass Rhizosphere	MTPKQHFRRLQLRLEIAEYGMGMPLDRERVKELREQVEQARKDAEHMDSDGFTEQAGGY
Ga0163161_107788822	3300017792	Switchgrass Rhizosphere	MTPKQHFRALQIRLEIAEFGMAMPLDRERVKELREQVEQARKDAELDASDGAE
Ga0163161_117485682	3300017792	Switchgrass Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAE
Ga0173481_101179512	3300019356	Soil	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDTMTSDGAEG
Ga0173479_100554004	3300019362	Soil	MTPKQHFRRLQLRLEIAEFGMGMPLYRERVKELREQVEQARKDAEHMDSDGFNEQAGGY
Ga0247753_10225891	3300022892	Soil	LQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDTMTSDGAEG
Ga0247787_10282613	3300022893	Soil	QIRLEIAEFGMGMPLDRERVKELREQVEQARKEAERMDSDGFTEQAGGY
Ga0247788_10119184	3300022901	Soil	MTPKQHFRRLQLRLEIAEFGMGMPLDRERVKELREQVEQARKDAEHMDSDGFNEQAGGY
Ga0247752_10717211	3300023071	Soil	PKQHFRALQIRLEIAEFGMAMPLDRERVKELREQVEQARKDAELDTMTSDGAEG
Ga0247748_10342683	3300023168	Soil	MTPKQHFRRLQLRLEIAEFGMGMPLDRERVKELREQVEQARKDAEHMDSDGFNEQMGGY
Ga0247748_10471582	3300023168	Soil	MTPKQHFRRLQLKLEIAEFGMGMPLDREHVKELREQVEQARKDAEHMDSDGFDEQMGGY
Ga0247798_10028951	3300023260	Soil	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAELD
Ga0247664_11292693	3300024232	Soil	MTPKQHFRRLQLRLEIAEFGMGMPLDRERVKELREQVEQARKDAEHMDS
Ga0207673_10110015	3300025290	Corn, Switchgrass And Miscanthus Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDTMTSDGSEQL
Ga0207697_1000073114	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARQDAAEALVEAELARITSDGAE
Ga0207697_100128937	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MTPKQHFRRLQLRLEIAEYGMGMPLDRERVKELREQVEQARKEAELDTMTSDGVE
Ga0207697_100305356	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MTPKQHFRALQLRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDTMTSDGVE
Ga0207697_100450825	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	VTPKQHFRRLQLKLEIAEFGMGMPLDRERVKELREQVEQARKDAELDAMTSDGVE
Ga0207697_101577401	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	GSQMTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKEAEHMDSDGFTEQAGGY
Ga0207697_103757823	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	KQHFRSLQIRLEIAEFGMGMPLDRERVKELRAQVEQARQDAAEALVEAELDRITSDGVE
Ga0207682_103102112	3300025893	Miscanthus Rhizosphere	MTPKQHFRALQIRLEIAEWGMGMPLDRERVKELREQVEQARKDAEHMDSDGFDEQAGGY
Ga0207642_105461284	3300025899	Miscanthus Rhizosphere	FGMGMPLDRERVKELRAQVEQARQDAAEALVEAELDRITSDGVE
Ga0207710_104213453	3300025900	Switchgrass Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDASDGAE
Ga0207680_102863741	3300025903	Switchgrass Rhizosphere	MTPKQHFRSLQIRLEIAEFGMGMPLDRERVKELRAQVEQARQDAAEALVEAELDRITSDGVE
Ga0207643_100232428	3300025908	Miscanthus Rhizosphere	HFRALQIRLEIAEFGMAMPLDRERVKELREQVEQARKDAELDASDGAE
Ga0207643_101024685	3300025908	Miscanthus Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAEHMDSDGFDEQAGGY
Ga0207643_101966302	3300025908	Miscanthus Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDAITSDGTEP
Ga0207662_101601533	3300025918	Switchgrass Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRECVKELREQVEQARKDAELDTMTSDGMEQS
Ga0207662_107169343	3300025918	Switchgrass Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAEEAE
Ga0207662_112691371	3300025918	Switchgrass Rhizosphere	RLEIAEFGMGMPLDRERVKELRAQVEQARQDAAEALVEAELDRITSDGVE
Ga0207681_100661471	3300025923	Switchgrass Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDTMTSDGVE
Ga0207650_1000139125	3300025925	Switchgrass Rhizosphere	MTPKQHFRRLQLRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDAMTSDGVE
Ga0207650_100542646	3300025925	Switchgrass Rhizosphere	MTPKQHFRALQFKLEIAEFGMGMPLDRERVKELREQVEQARKDAELDTITSDGVE
Ga0207650_101697442	3300025925	Switchgrass Rhizosphere	MTPKQHFRALQIRLEIAEFGMRMPLDRERVKELREQVEQARKDAELDTMTSDGGE
Ga0207650_101961933	3300025925	Switchgrass Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAESVIEDDQ
Ga0207650_102425141	3300025925	Switchgrass Rhizosphere	MTPKQHFRRLQLRLEIAEWGMGMPLDRERVKELREQVEQARKEAEHMDSDGFNEQQGGY
Ga0207650_111557192	3300025925	Switchgrass Rhizosphere	MTPKQHFRALQIRLEIAEYGMGMPLDRKRVKELREQVEQARKDAELDTMTSDGVE
Ga0207650_113401074	3300025925	Switchgrass Rhizosphere	MTPKQHFRRLQLRLEIAEFGMGMPLDRERVKELREQVEQARKDAEHMDSDGFNEQQGGY
Ga0207659_100261733	3300025926	Miscanthus Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAEHMDSDGFNEQQGGY
Ga0207659_100992455	3300025926	Miscanthus Rhizosphere	MTPKQHFRRLQLKLEIAEFGMALPRDEERVRELRAQLEQAKKDAADEVEQ
Ga0207659_102912474	3300025926	Miscanthus Rhizosphere	TPKQHFRRLQLRLEIAEFGMGMPLDRERVKELREQVEQARKDAEHMDSDGFNEQAGGY
Ga0207659_112869843	3300025926	Miscanthus Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKEAEHMDSDGFNEQAGGY
Ga0207659_117035641	3300025926	Miscanthus Rhizosphere	MTPKQHFRHLQFKLEIAEFGMGMPYDGERVKELREQVEQARKEAEHMDSDGFTEQAGGY
Ga0207687_119482792	3300025927	Miscanthus Rhizosphere	MTPKQHFRRLQFKLELAEFGMAMPYDADRVKELREQVEQARKDAELDTMTSDGVE
Ga0207701_101029077	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKEAEHMDSDGFTEQQGGY
Ga0207701_107566041	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	QHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDVELDAIISDGTEP
Ga0207644_1000037632	3300025931	Switchgrass Rhizosphere	MTPKQHFRSLQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDTMTSDGTEP
Ga0207686_102606743	3300025934	Miscanthus Rhizosphere	MTPKQHFRRLQLRLEIAEFGMGMPYDAERVKELREQVEQARKDAEQDSDGEVVS
Ga0207686_103697833	3300025934	Miscanthus Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRDRVKELREQVEQARKDAELDTMTSDGVE
Ga0207686_111173151	3300025934	Miscanthus Rhizosphere	NGNKTVTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDVELDAIISDGTE
Ga0207709_1000157326	3300025935	Miscanthus Rhizosphere	MTPKQHFRSLQIRLEIAEFGMGMPLDRERVKELRAQVEQARQDAAEALVEA
Ga0207709_100306871	3300025935	Miscanthus Rhizosphere	SAKTGDQMTPKQHFRALQIRLEIAEFGMAMPLDRERVKELREQVEQARKDAELDASDGAE
Ga0207709_103279722	3300025935	Miscanthus Rhizosphere	MTPKQHFRRLQLRLEIAEFGMGMPYDAERVKELREQVEQARKDAEHMDSDGFDEQMGGY
Ga0207670_105955504	3300025936	Switchgrass Rhizosphere	MTPKQHFRRLQLRLEIAEFGMGMPLDRERVKELREQVEQARKDAEQDSDGEVVS
Ga0207670_113330544	3300025936	Switchgrass Rhizosphere	TPKQHFRHLQFKLEIAEFGMGMPYDGERVKELREQVEQARKEAEHMDSDGFTEQAGGY
Ga0207691_100946475	3300025940	Miscanthus Rhizosphere	MTPKQHFRALQIRLEIAEFGMALPLDRERVKELREQVEQARKDAELDTMTSDGMEQS
Ga0207711_102062644	3300025941	Switchgrass Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRECVKELREQVEQARKDAELDAMTSDGAEQ
Ga0207711_105791664	3300025941	Switchgrass Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAEHMDSDGF
Ga0207711_106212191	3300025941	Switchgrass Rhizosphere	MTPKQHFRALQLRLEIAEFGMGMPLDRERVKELREQVEQARKDAE
Ga0207689_104214353	3300025942	Miscanthus Rhizosphere	MTPKQHFRRLQLRLEIAEFGMGMPYDAERVKELREQVEHARKEAEHMDSDGFTEQAGGY
Ga0207689_113717041	3300025942	Miscanthus Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAEHM
Ga0207651_106115593	3300025960	Switchgrass Rhizosphere	MTPKQHFRALQLRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDTMTSDGSE
Ga0207651_119326612	3300025960	Switchgrass Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAESV
Ga0207712_104459813	3300025961	Switchgrass Rhizosphere	VTPKQHFRRLQLRLEIAEFGMGMPLDRERVKELREQVEQARKEAEHMDSDGFNEQAGGY
Ga0207658_108842822	3300025986	Switchgrass Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPYDAERVKELREQVEQARKDAELDTMTSDGVE
Ga0207677_113283311	3300026023	Miscanthus Rhizosphere	VTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQ
Ga0207641_102652554	3300026088	Switchgrass Rhizosphere	HFRALQIRLEIAEFGMALPLDRERVKELREQVEQARKDAELDTMTSDGMEQS
Ga0207641_106840252	3300026088	Switchgrass Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDGMTSDGVE
Ga0207641_113024724	3300026088	Switchgrass Rhizosphere	MTPKQHFRALQIRLEIAEFGMAMPLDRERVKELREQVEQARKDAELDA
Ga0207641_115738431	3300026088	Switchgrass Rhizosphere	MTPKQHFRALQIRLEIAEFGMALPLDRERVKELREQVEQAR
Ga0207641_120411881	3300026088	Switchgrass Rhizosphere	MTPKQHFRALQFKLEIAEFGMGMPLDRERVKELREQVEQARKDAELDTI
Ga0207648_100995712	3300026089	Miscanthus Rhizosphere	MTPKQHFRRLQLRLEIAEYGMGMPLDRDRVKELREQVEQARKDAEHMDSDGFNEQAGGY
Ga0207648_112192752	3300026089	Miscanthus Rhizosphere	VTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDTMTSDGVE
Ga0207676_100367701	3300026095	Switchgrass Rhizosphere	MTPKQHFRALQFKLEIAEFGMGMPLDRERVKELREQVEQARKDAE
Ga0207676_101133132	3300026095	Switchgrass Rhizosphere	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDTMTSDGGE
Ga0207676_104935655	3300026095	Switchgrass Rhizosphere	PLGAVMTPKQHFRHLQFKLEIAEFGMGMPYDGERVKELREQVEQARKEAEHMDSDGFTEQAGGY
Ga0207676_114941821	3300026095	Switchgrass Rhizosphere	PKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAEHMDSDGFNEQQGGY
Ga0207683_106015333	3300026121	Miscanthus Rhizosphere	MTPKQHFRALQLRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDTMTSDGV
Ga0207683_114537991	3300026121	Miscanthus Rhizosphere	AMTPKQHFRRLQFKLELAEFGMAMPYDADRVKELREQVEQARKDAELDTMTSDGVE
Ga0207428_1000188727	3300027907	Populus Rhizosphere	MTPKQHFRRLQLRLEIAEYGMGMPLDRERVKELREQVEQARKDAERMDSDGFTEQAGGY
Ga0268266_107373001	3300028379	Switchgrass Rhizosphere	AEFGMGMPLDRERVKELREQVEQARQDAAEALVEAELARITSDGAE
Ga0307468_1017577602	3300031740	Hardwood Forest Soil	MTPKQHFRHLQFKLEIAEFGMGMPLDRERVKELREQVEQARKEAELLDSDGFTEQAGGY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F025065

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences