Metagenome / Metatranscriptome Family F029191

Basic Information
Family ID	F029191
Family Type	Metagenome / Metatranscriptome
Number of Sequences	189
Average Sequence Length	43 residues
Representative Sequence	MKYLVPPIVIPVLLFIGVVAYGVLRPPIVVGHPPVPAANSQPR
Number of Associated Samples	142
Number of Associated Scaffolds	189

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	69.31 %
% of genes near scaffold ends (potentially truncated)	41.27 %
% of genes from short scaffolds (< 2000 bps)	79.89 %
Associated GOLD sequencing projects	134
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (76.720 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (24.339 % of family members)
Environment Ontology (ENVO)	Unclassified (22.751 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.439 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64 1JGI12627J18819_101735502 2JGIcombinedJ26739_1001453713 3Ga0005473J37261_1149931 4Ga0005475J37263_1015651 5Ga0005475J37263_1125241 6JGI26341J46601_1000001336 7JGIcombinedJ51221_100179362 8Ga0062385_104059072 9Ga0062384_1002323421 10Ga0062384_1003450553 11Ga0062384_1006000302 12Ga0062384_1009814971 13Ga0062389_1030045912 14Ga0062389_1033303112 15Ga0058900_14297973 16Ga0058904_14358004 17Ga0058893_10080031 18Ga0058901_13451312 19Ga0058897_108233931 20Ga0062386_1013182942 21Ga0058899_122843134 22Ga0066672_103391532 23Ga0066673_107078032 24Ga0066690_105568571 25Ga0066688_102333373 26Ga0066684_100832693 27Ga0066678_106726071 28Ga0066671_100551012 29Ga0070713_1001323541 30Ga0070710_100433272 31Ga0070711_1007619572 32Ga0070706_1016882632 33Ga0070707_1011695242 34Ga0070698_1011528381 35Ga0066705_106909311 36Ga0070717_105495253 37Ga0075024_1005809252 38Ga0070712_1000052495 39Ga0070712_1008636762 40Ga0066653_101672021 41Ga0066665_100381014 42Ga0066665_103855373 43Ga0066665_105513361 44Ga0066665_112554601 45Ga0066665_113326322 46Ga0066660_100896321 47Ga0079221_113394502 48Ga0079220_110522492 49Ga0075425_1012543251 50Ga0073928_100601707 51Ga0075435_1007005721 52Ga0099829_101916323 53Ga0099830_101140833 54Ga0099830_116219883 55Ga0099828_114447572 56Ga0066709_1044604261 57Ga0099792_1000326310 58Ga0099792_110082081 59Ga0111538_126993722 60Ga0075423_124198692 61Ga0126373_100487783 62Ga0126372_104066673 63Ga0126372_131262772 64Ga0150983_111213073 65Ga0150983_115983972 66Ga0150983_117282842 67Ga0150983_143098882 68Ga0150983_153681253 69Ga0137393_100904513 70Ga0153943_11295091 71Ga0137382_104343032 72Ga0137380_107875102 73Ga0137381_100528964 74Ga0137377_115448222 75Ga0137360_113729982 76Ga0137361_109625323 77Ga0134040_10174963 78Ga0137394_103251563 79Ga0137359_113622732 80Ga0137410_113099262 81Ga0182032_101327112 82Ga0182032_101536221 83Ga0182037_101648564 84Ga0182038_110070201 85Ga0187818_104550401 86Ga0187814_104423982 87Ga0187808_100462532 88Ga0187819_105187132 89Ga0187817_104547672 90Ga0187804_102416641 91Ga0066667_113006652 92Ga0066667_119154481 93Ga0066662_102213933 94Ga0184602_1125923 95Ga0210407_100751732 96Ga0210403_102855873 97Ga0210403_111061761 98Ga0210399_102305293 99Ga0210399_107303491 100Ga0210399_109134312 101Ga0210399_109406061 102Ga0210399_114524522 103Ga0210395_100012024 104Ga0210395_104805053 105Ga0210401_102591974 106Ga0210401_111077212 107Ga0210404_101676703 108Ga0210404_102520863 109Ga0210406_113050572 110Ga0213873_100173022 111Ga0210387_110529122 112Ga0210384_116455802 113Ga0210390_100096685 114Ga0187846_100059968 115Ga0187846_100122112 116Ga0187846_100234292 117Ga0210402_106504441 118Ga0210402_117465722 119Ga0210410_100813673 120Ga0126371_100322109 121Ga0242654_103512902 122Ga0242654_103869092 123Ga0247553_1003242 124Ga0207693_100145124 125Ga0209686_10984482 126Ga0209473_11858642 127Ga0257150_10159402 128Ga0257161_11187771 129Ga0209156_103228761 130Ga0209577_107682912 131Ga0208097_10004166 132Ga0209446_10072186 133Ga0207862_12349181 134Ga0209006_110510722 135Ga0307482_10413573 136Ga0265763_10043801 137Ga0308178_10014751 138Ga0308178_10084242 139Ga0308178_10223843 140Ga0170834_1002994813 141Ga0170822_123914586 142Ga0170822_139975453 143Ga0170823_136971831 144Ga0170824_1026907222 145Ga0170824_1106817153 146Ga0170824_1140606031 147Ga0170820_162794871 148Ga0170820_176780062 149Ga0170818_1040939022 150Ga0318516_103479752 151Ga0318541_100311183 152Ga0318541_103567822 153Ga0307480_10096982 154Ga0318572_103994432 155Ga0318560_100727814 156Ga0318560_103444283 157Ga0310686_1102911231 158Ga0307476_100462212 159Ga0306917_111875923 160Ga0318537_100238804 161Ga0318552_100065435 162Ga0318550_100744234 163Ga0318567_106566231 164Ga0310917_104372021 165Ga0310917_104790981 166Ga0318517_101683351 167Ga0318495_101650691 168Ga0316036_1173762 169Ga0306919_101008512 170Ga0306921_102049312 171Ga0306921_119477992 172Ga0318530_103693491 173Ga0307479_110576131 174Ga0307479_117126001 175Ga0318575_102820943 176Ga0318504_103132091 177Ga0318577_100120928 178Ga0318577_100978651 179Ga0318540_100256864 180Ga0307470_111670121 181Ga0307471_1039729101 182Ga0307471_1043414822 183Ga0348332_105367102 184Ga0348332_144560852 185Ga0348332_146328522 186Ga0348332_146821453 187Ga0335074_103563113 188Ga0335075_1001339720 189Ga0318519_102406943
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64 1JGI12627J18819_101735502 2Ga0005473J37261_1149931 3Ga0005475J37263_1015651 4JGI26341J46601_1000001336 5JGIcombinedJ51221_100179362 6Ga0062384_1003450553 7Ga0062384_1006000302 8Ga0062389_1030045912 9Ga0058900_14297973 10Ga0058893_10080031 11Ga0062386_1013182942 12Ga0066678_106726071 13Ga0070713_1001323541 14Ga0070707_1011695242 15Ga0070698_1011528381 16Ga0066705_106909311 17Ga0075024_1005809252 18Ga0066665_103855373 19Ga0066665_105513361 20Ga0066665_112554601 21Ga0075425_1012543251 22Ga0111538_126993722 23Ga0126373_100487783 24Ga0137382_104343032 25Ga0137361_109625323 26Ga0182032_101327112 27Ga0182037_101648564 28Ga0187818_104550401 29Ga0187814_104423982 30Ga0210399_109406061 31Ga0210399_114524522 32Ga0210401_102591974 33Ga0210384_116455802 34Ga0207862_12349181 35Ga0308178_10223843 36Ga0310917_104790981 37Ga0306921_119477992 38Ga0307479_110576131 39Ga0318577_100120928 40Ga0348332_146821453
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42. 1Ga0066660_100896321 2JGI12627J18819_101735502 3Ga0005473J37261_1149931 4JGI26341J46601_1000001336 5JGIcombinedJ51221_100179362 6Ga0062385_104059072 7Ga0062384_1002323421 8Ga0062384_1003450553 9Ga0062384_1006000302 10Ga0058904_14358004 11Ga0062386_1013182942 12Ga0066673_107078032 13Ga0066678_106726071 14Ga0070713_1001323541 15Ga0070711_1007619572 16Ga0070707_1011695242 17Ga0075024_1005809252 18Ga0066665_100381014 19Ga0066665_103855373 20Ga0066665_105513361 21Ga0066665_112554601 22Ga0079221_113394502 23Ga0079220_110522492 24Ga0099830_116219883 25Ga0111538_126993722 26Ga0075423_124198692 27Ga0150983_111213073 28Ga0137382_104343032 29Ga0137360_113729982 30Ga0137394_103251563 31Ga0182032_101327112 32Ga0187818_104550401 33Ga0187804_102416641 34Ga0066667_113006652 35Ga0066662_102213933 36Ga0210407_100751732 37Ga0210403_102855873 38Ga0210399_102305293 39Ga0210401_102591974 40Ga0213873_100173022 41Ga0210384_116455802 42Ga0187846_100059968 43Ga0187846_100234292 44Ga0210402_117465722 45Ga0126371_100322109 46Ga0208097_10004166 47Ga0207862_12349181 48Ga0209006_110510722 49Ga0308178_10014751 50Ga0308178_10223843 51Ga0170834_1002994813 52Ga0170824_1026907222 53Ga0318541_100311183 54Ga0318560_103444283 55Ga0307476_100462212 56Ga0318552_100065435 57Ga0306921_119477992 58Ga0307479_110576131 59Ga0348332_105367102 60Ga0348332_146328522 61Ga0348332_146821453 62Ga0335075_1001339720
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 21.13% β-sheet: 0.00% Coil/Unstructured: 78.87%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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Pfam ID	Name	% Frequency in 189 Family Scaffolds
PF01841	Transglut_core	8.47
PF00313	CSD	2.12
PF00108	Thiolase_N	1.59
PF00118	Cpn60_TCP1	1.59
PF09849	DUF2076	1.59
PF00211	Guanylate_cyc	1.06
PF00872	Transposase_mut	1.06
PF00196	GerE	0.53
PF02775	TPP_enzyme_C	0.53
PF01042	Ribonuc_L-PSP	0.53

COG ID	Name	Functional Category	% Frequency in 189 Family Scaffolds
COG0183	Acetyl-CoA acetyltransferase	Lipid transport and metabolism [I]	2.12
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	1.59
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	1.06
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	1.06
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.53
COG1272	Predicted membrane channel-forming protein YqfA, hemolysin III family	Intracellular trafficking, secretion, and vesicular transport [U]	0.53
COG3158	K+ uptake protein Kup	Inorganic ion transport and metabolism [P]	0.53
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.53

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	76.72 %
Unclassified	root	N/A	23.28 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	76.72 %
Unclassified	root	N/A	23.28 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	76.72 %
Unclassified	root	N/A	23.28 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.53 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	67.20 %
Unclassified	root	N/A	23.28 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	62.96 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.53 %
Unclassified	root	N/A	23.28 %

Name	Rank	Taxonomy	Distribution
Candidatus Dadabacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria	0.53 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.53 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	9.52 %
Unclassified	root	N/A	23.28 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	31.22 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	31.22 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	0.53 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.53 %
Candidatus Dadabacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	0.53 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1.59 %
Unclassified	root	N/A	23.28 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	1.06 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	31.22 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.53 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.53 %
Candidatus Dadabacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	0.53 %
Inquilinus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Inquilinus	0.53 %
Magnetospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum	0.53 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1.06 %
Unclassified	root	N/A	23.28 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	31.22 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.53 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.53 %
Candidatus Dadabacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	0.53 %
Inquilinus limosus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Inquilinus → Inquilinus limosus	0.53 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1.06 %
Unclassified	root	N/A	23.28 %
unclassified Magnetospirillum	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → unclassified Magnetospirillum	0.53 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	31.22 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.53 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.53 %
Candidatus Dadabacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	0.53 %
Inquilinus limosus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Inquilinus → Inquilinus limosus	0.53 %
Magnetospirillum sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → unclassified Magnetospirillum → Magnetospirillum sp.	0.53 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1.06 %
Unclassified	root	N/A	23.28 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001867\|JGI12627J18819_10173550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	874	Open in IMG/M
3300002245\|JGIcombinedJ26739_100145371	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2240	Open in IMG/M
3300002675\|Ga0005473J37261_114993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	574	Open in IMG/M
3300002677\|Ga0005475J37263_101565	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	721	Open in IMG/M
3300002677\|Ga0005475J37263_112524	Not Available	830	Open in IMG/M
3300003219\|JGI26341J46601_10000013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	55439	Open in IMG/M
3300003505\|JGIcombinedJ51221_10017936	All Organisms → cellular organisms → Bacteria	2442	Open in IMG/M
3300004080\|Ga0062385_10405907	Not Available	816	Open in IMG/M
3300004082\|Ga0062384_100232342	Not Available	1108	Open in IMG/M
3300004082\|Ga0062384_100345055	Not Available	941	Open in IMG/M

Showing 1 to 10 of 189 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.83%
Host-Associated	Host-Associated	3.17%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	9.52%
Fungi	Host-Associated → Fungi	0.53%
Plants	Host-Associated → Plants	2.65%
Terrestrial	Environmental → Terrestrial	87.30%

Habitat	Taxonomy	Distribution
Cave	Environmental → Terrestrial → Cave	1.59%
Freshwater	Environmental → Aquatic → Freshwater	8.47%
Mycelium	Host-Associated → Fungi → Mycelium	0.53%
Plant Litter	Environmental → Terrestrial → Plant Litter	2.12%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.65%
Sediment	Environmental → Aquatic → Sediment	0.53%
Soil	Environmental → Terrestrial → Soil	83.60%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.53%

Habitat	Taxonomy	Distribution
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.53%
Loam	Environmental → Terrestrial → Soil → Loam	16.93%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	65.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.65%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	2.12%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	1.59%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.53%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.53%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.47%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.06%

Habitat	Taxonomy	Distribution
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.53%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.06%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.29%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.29%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	38.10%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.58%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.11%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.06%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.17%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.34%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.65%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	2.12%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	1.59%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.06%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.53%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.53%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.06%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.53%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	1.59%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	5.29%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.29%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	10.05%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	5.29%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.17%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.12%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.53%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.23%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.53%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	2.12%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.12%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.34%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.23%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.23%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.06%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.06%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.12%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.53%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.47%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.53%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002675	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF122 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300002677	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF124 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004099	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF236 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Showing 1 to 10 of 142 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12627J18819_101735502	3300001867	Forest Soil	MKYVVPPIVIPILLFIGIVAYGVLRPPIIAGHLPAPAANSQAR*
JGIcombinedJ26739_1001453713	3300002245	Forest Soil	MKYLVPPIVIPVLLFIGVVAYGVLRPPMIVGHPPFPAANSQPR*
Ga0005473J37261_1149931	3300002675	Forest Soil	KIGNTMKYLVPPIVIPALLFIGVVAYGMLRPPINVAHSPVPAANSQPR*
Ga0005475J37263_1015651	3300002677	Forest Soil	RVLFNLGNLMKYLVPPIVIPVLLFIGVVAYGVLRPPMIVGHPPFPAANSQPR*
Ga0005475J37263_1125241	3300002677	Forest Soil	MKYLVPPIVIPILLFIGVAAYGLLRPPIVAVGHLPAAAANSQPG*
JGI26341J46601_1000001336	3300003219	Bog Forest Soil	MRYLVPPIVIPILLFLGVAAYGLFGPPIVAAGHHPASSLNSQPR*
JGIcombinedJ51221_100179362	3300003505	Forest Soil	VKYLVPPIVIPVLLFIGVVSYALLRPPLVVGHPVAPVSIAQPR*
Ga0062385_104059072	3300004080	Bog Forest Soil	MKYLVPPIVIPILLFIGVAAYGLLGPPIIAGGHPPATAVNTQPR*
Ga0062384_1002323421	3300004082	Bog Forest Soil	KYLVPPIVIPVLLFIGVVAYAALRPPFVVAHPAAPVANTQPR*
Ga0062384_1003450553	3300004082	Bog Forest Soil	SRFSNKRETMKYLVPPIVIPVLLFIGIVTYGMLRPPISVGPPPISAVSPQTR*
Ga0062384_1006000302	3300004082	Bog Forest Soil	VKYLVPPIVIPVLLIIGIAAYALLKPPIVVGHSPASAANTQPR*
Ga0062384_1009814971	3300004082	Bog Forest Soil	SRFSNKRETMKYLVPPIVIPVLLFIGIVTYGMLRPPIIVGPPPMSAVSPQTR*
Ga0062389_1030045912	3300004092	Bog Forest Soil	YLVPPIVIPVLLFIGIAAYGMLRPPIIVGHAPAPAASAQPR*
Ga0062389_1033303112	3300004092	Bog Forest Soil	MKYLVPPIVIPILLFIGVAAYGLLRPPIVTVGHLPAAAANSQPR*
Ga0058900_14297973	3300004099	Forest Soil	MKYLVPPIVIPVLLIIGVLAYGMLKPPIIAGHSPVPVADSRTR*
Ga0058904_14358004	3300004100	Forest Soil	VLFNLGNLMKYLVPPIVIPVLLFIGVVAYGILRPPMIVGHPPFPAANSQPH*
Ga0058893_10080031	3300004117	Forest Soil	MKYLVPPIVIPVLLVIGIAAYAILAPPIVAGHSSVPVATSQPGKAALAV
Ga0058901_13451312	3300004120	Forest Soil	MKYLVPPIVIPILLLIGVAAYGLLRPPIVAVGHLPAAAANSQPG*
Ga0058897_108233931	3300004139	Forest Soil	KYLVPPIVIPVLLVIGIAAYAILAPPIVAGHSSLPVATSQPR*
Ga0062386_1013182942	3300004152	Bog Forest Soil	KGRTMKYLVPPIVIPVLLFIGIVAYGLLGPPPLAAGHSPASAVSSQPR*
Ga0058899_122843134	3300004631	Forest Soil	MKYLVPPIVIPILLFIGVAAYGLLRPPIVAVGHLPAAAANSQSR*
Ga0066672_103391532	3300005167	Soil	MKYLVPPIVIPVLLFIGVVAYGMLKPPIIVGQPPVPAANSQHR*
Ga0066673_107078032	3300005175	Soil	MKYLVPPIVIPALLLIGVLAYGMLRPPIIVGHAPVPTAHSQAR*
Ga0066690_105568571	3300005177	Soil	MGSTMKYLVPPIVIPVLLFIGVVAYGMLKPPIIVGQPPVPAANSQHR*
Ga0066688_102333373	3300005178	Soil	MGSTVKYLVPPIVIPVLLFIGVVAYGMLKPPIIVGQPPVPAANSQHR*
Ga0066684_100832693	3300005179	Soil	MKYLVPPIVIPVLLFIGVVAYGTLKPPIIVGQPPVPAANSQHR*
Ga0066678_106726071	3300005181	Soil	KPMKYLVPPIVIPVLLVIGIAAYVVLGPPIVAGHSPVPVAASQPR*
Ga0066671_100551012	3300005184	Soil	MGSTVKYLVPPIVIPVLLFIGVMAYGMLKPPIIVGQPPVPAANSQHR*
Ga0070713_1001323541	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MKFLVPPLVIPVLLFVGVVAYGLLKPPIIVGHPPFPAANSQPR*
Ga0070710_100433272	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MKYLVPPIVIPALLFIGVVAYGMLRPPINVAHSPVPAANSQPR*
Ga0070711_1007619572	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MKYLVPPIVIPVLLFIGIAAYGMLRPPITVDHPPAPAAISQSR*
Ga0070706_1016882632	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MKYLVPPIVIPVLLFIGIAAYGMLRPPIIVGHPPAPAANSQ
Ga0070707_1011695242	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MKYLVPPIVIPVLLVIGIAAYAMLRQPIVLDHPSVSSATSPPR*
Ga0070698_1011528381	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	LHKGKNMKYLVPPIVIPVLLFIGIAAYGMLRPPITVDHPPAPAAISQSR*
Ga0066705_106909311	3300005569	Soil	MKYLVPPIVIPVLLFIGVVAYGVLRPPIVVGHPPVP
Ga0070717_105495253	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MKFLVPPLVIPVLLFVGVIAYGLLKPPIIVGHPPF
Ga0075024_1005809252	3300006047	Watersheds	MKYLVPPIVIPALLFVGIVTYGMLRPPIIGSHPPMSVSSQTR
Ga0070712_1000052495	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MKYLVPPIVIPVLLFIGVVAYGMLRPPIIVAHPPVPVANSQAR*
Ga0070712_1008636762	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	KGKNMKYLVPPIVIPVLLFIGIAAYGMLRPPITVDHPPAPAAISQSR*
Ga0066653_101672021	3300006791	Soil	NEMKHLVPPIVIPALLLIGVVAYGMLRPPIIVGHAPVPTAHSQAR*
Ga0066665_100381014	3300006796	Soil	MKYLVPPIVIPVLLFIGIAAYGMLRPPIIVGYAPAPAASAQPR*
Ga0066665_103855373	3300006796	Soil	FARNTMKYLVPPIVIPILLLIGIAAYATLRPPLIVGVPAVPAVHSLSR*
Ga0066665_105513361	3300006796	Soil	VIGFRYKGATMRYLVPPIVIPVLLLIGIAAFGMLRPPIVSGNAPLPAVSAQTR*
Ga0066665_112554601	3300006796	Soil	MKYLVPPIVIPVLLLIGIAAYGMLRPSIVIGNAPLSAVSAQTR*
Ga0066665_113326322	3300006796	Soil	FLLDLRTMKYLVPPIVIPVLLMIGIAAYVVFGPPIVAGHSPVPVAASQPR*
Ga0066660_100896321	3300006800	Soil	MKYLVPPIVIPVLLFIGVVAYGVLRPPIVVGHPPVPAANSQPR
Ga0079221_113394502	3300006804	Agricultural Soil	MKYLVPPIVIPVLLFIGILAYGMLRPPIIVGPPVAPANSQPR*
Ga0079220_110522492	3300006806	Agricultural Soil	MKYLVPPIVIPVLLFIGVAAYGMLRPPIIVGHPLTPAANSQT
Ga0075425_1012543251	3300006854	Populus Rhizosphere	MKYLVPPIVIPILLVIGVAVYGLLGPPIVAVGHAPAAAASSQSR*
Ga0073928_100601707	3300006893	Iron-Sulfur Acid Spring	MKYLVPPIVIPVLLFIGVVAYGMLKPPMIVGLPPFPAANSQPR*
Ga0075435_1007005721	3300007076	Populus Rhizosphere	MKYLVPPIVIPVLLVIGIAAYVVLGPPIVAGHSPVPVAASQPR
Ga0099829_101916323	3300009038	Vadose Zone Soil	MKYLVPPIVIPVLLVIGIAAYGMLRPPIVVGNAPLPAASAQTR*
Ga0099830_101140833	3300009088	Vadose Zone Soil	MKYLVPPIVIPVLLVIGIAAYGMLRPPIVAGNTPLPAASAQTR*
Ga0099830_116219883	3300009088	Vadose Zone Soil	VPPIVIPVLLFIGIAAYALLRPPIIVAHPAAPAVNSQPR*
Ga0099828_114447572	3300009089	Vadose Zone Soil	MKYLVPPIVIPVLLFIGIAAYGMLRPPIVVGNAPPPAASVQTR*
Ga0066709_1044604261	3300009137	Grasslands Soil	MKYLVPPIVIPILLVIGVAAYGLLGPPIVAVGHAPAAAASSQTR*
Ga0099792_1000326310	3300009143	Vadose Zone Soil	MKYLVPPIVIPVLLFIGIAAYGMLRSPITVDHPPAPAAISQSR*
Ga0099792_110082081	3300009143	Vadose Zone Soil	MKYLVPPIVIPVLLFIGIAAYGMLRPPIVVGNAPLPAAIVQTR*
Ga0111538_126993722	3300009156	Populus Rhizosphere	MKYVVPPIVIPVLLFIGIVAYAMLRPPITDAHPPTPAANLQ
Ga0075423_124198692	3300009162	Populus Rhizosphere	MKYLVPPIVIPILSVIGVAVYGLLGPPIVAVGHAPAAAASSQSR*
Ga0126373_100487783	3300010048	Tropical Forest Soil	MKYLVPPIVIPFLLVIGIVAYGMLKSPNIDGHSPAPAVSSQSR*
Ga0126372_104066673	3300010360	Tropical Forest Soil	MKYLVPPIVIPILLFIGVAAYGLFGPPIVAAGNHPTSSLNSQPR*
Ga0126372_131262772	3300010360	Tropical Forest Soil	MKYLVPPIVIPVLLFIGIAAYAMLRPPIIVGHAPAPAASAQPR*
Ga0150983_111213073	3300011120	Forest Soil	MKYLVPPIVIPVLLFIGVVAYGMLRPPIIVAHPAVPVANSQAR*
Ga0150983_115983972	3300011120	Forest Soil	MKYLVPPIVIPVLLFIGIAAYAMLRPPIVVGNAPLPAASAQTR*
Ga0150983_117282842	3300011120	Forest Soil	MKYLVPPIVIPVLLFIGVVAYGMLRPPIIVGHAPAPAASAQP*
Ga0150983_143098882	3300011120	Forest Soil	MKYLVPPIVIPVLLFIGIAAYAMLKPPIIVGHAPAPAANAQPR*
Ga0150983_153681253	3300011120	Forest Soil	MKYLVPPIVIPVLLFIGIAAYAMLRPPIIAGHVSAPAASAQPR*
Ga0137393_100904513	3300011271	Vadose Zone Soil	MKYLVPPIVIPVLLFIGIAAYGMLRPPIVAGNTPLPAASAQTR*
Ga0153943_11295091	3300012177	Attine Ant Fungus Gardens	VKYLVPPIVIPILLLVGVVSYALLRPPLVAGHPVAPVSIAQPR*
Ga0137382_104343032	3300012200	Vadose Zone Soil	MPVILFSLKQKPMKYLVPPIVIPVLLVIGIAAYAILAPPIVAVHSSVPVATSQPR*
Ga0137380_107875102	3300012206	Vadose Zone Soil	LHKGKNMKYLVPPIVIPVLLFIGIAAYGMLRPPIAVDHP
Ga0137381_100528964	3300012207	Vadose Zone Soil	MKYLVPPIVIPVLLFIGIAAYGMLRPPIAVDHPPTPAAISQSR*
Ga0137377_115448222	3300012211	Vadose Zone Soil	MPVILFSLKQKPMKYLVPPIVIPVLWGIGIAAYAILAPPIVAVHSSVPVATSQPR*
Ga0137360_113729982	3300012361	Vadose Zone Soil	MKYLVPPIVIPVLLFIGILAYGMLRPPIIAGHPPTPA
Ga0137361_109625323	3300012362	Vadose Zone Soil	LHKGKNMKYLVPPIVIPVLLFIGIAAYGMLRPPITA
Ga0134040_10174963	3300012389	Grasslands Soil	MKYLVPPIVIPVLLFIGVVAYGMLKPPIIVGQLPVPAANSQQR*
Ga0137394_103251563	3300012922	Vadose Zone Soil	MPVILFSLKQKPMKYLVPPIVIPILLVIGIAAYAALGPPVVAAHSPVPVATSQPR*
Ga0137359_113622732	3300012923	Vadose Zone Soil	MKYLVPPIVIPVLLFIGIAAYVMLRPPITVGHAPAPAANAQPR*
Ga0137410_113099262	3300012944	Vadose Zone Soil	MKYLVPPIVIPVLLVIGIAAYAMLGPPIVAGHPPVPVATSQ
Ga0182032_101327112	3300016357	Soil	VIPILLFIGIVAYGMLRPPITVDHPPASAATSESR
Ga0182032_101536221	3300016357	Soil	LVPPIVIPILLVIGVAAYALFGPPIVPAGHSPASALTSQPR
Ga0182037_101648564	3300016404	Soil	MKYMVPPIVIPILLFIGVVAYGLFGPPIIAGGHPSATAVNTQPR
Ga0182038_110070201	3300016445	Soil	KYLVPPIVIPILLFIGVAAYGLLRPPIVAVGHLPAAAANSQPG
Ga0187818_104550401	3300017823	Freshwater Sediment	LSLKEEKTLKYLVPPIVIPVLLFIGIVAYALLRRPLVVGHPVAPLSIAQPR
Ga0187814_104423982	3300017932	Freshwater Sediment	VFKKGKVMKYLVPPIVIPMLLFIGIVAYALLRPPIVVGRSLAPVSIAQPR
Ga0187808_100462532	3300017942	Freshwater Sediment	MKYLVPPIVIPMLLFIGIVAYALLRPPIVVGRSLAPVSIAQPR
Ga0187819_105187132	3300017943	Freshwater Sediment	MKYLVPPIVIPMLLFIGIVAYALLRPPIVVGHSLAPVSIAQPR
Ga0187817_104547672	3300017955	Freshwater Sediment	MKYLVPPIVIPMLLFIGIVAYALLRPPIVVGYSLAPVSIAQPR
Ga0187804_102416641	3300018006	Freshwater Sediment	MKYLVPPIVIPMLLFIGIVAYALLRPPIVVGHSLAPVSMAQPR
Ga0066667_113006652	3300018433	Grasslands Soil	MIKGTTMKYLVPPIVIPVLLFIGIAAYGMLRPPIVAGNAPLPAASAPTR
Ga0066667_119154481	3300018433	Grasslands Soil	MRYLVPPIVIPVLLLIGIAAFGMLRPPIVSGNAPLPAVSA
Ga0066662_102213933	3300018468	Grasslands Soil	MGSTVKYLVPPIVIPVLLFIGVVAYGMLKPPIIVGQPPVPAANSQHR
Ga0184602_1125923	3300019161	Soil	MKYLVPPIVIPILLFIGVAAYGLLRPPIVAVGHLPAAAANSQSR
Ga0210407_100751732	3300020579	Soil	MKYLVPPIVIPVLLFIGIAAYAMLRPPIIAGHVSAPAASAQPR
Ga0210403_102855873	3300020580	Soil	MKYLVPPIVIPILLFIGVAAYGLLRPPIVAVGHLPAAAANSQPG
Ga0210403_111061761	3300020580	Soil	ATMKYLVPPIVIPVLLFIGIAAYAMLRPPIIAGHVSAPAASAQPR
Ga0210399_102305293	3300020581	Soil	MRYVVPPIVIPILLFIGVAAYGLLRPPIVAAGAGHYPASSLNSQPR
Ga0210399_107303491	3300020581	Soil	MKYLVPPIVIPVLLFIGVVAYGMLRPPMIVGHPPFPAANS
Ga0210399_109134312	3300020581	Soil	MKYLVPPIVIPVLLFIGIAAYAMLRPPIVVGNAPLPAASAQTR
Ga0210399_109406061	3300020581	Soil	MKYLVPPIVIPVLLFIGIAAYAMLRPPIIAGHVSAPPA
Ga0210399_114524522	3300020581	Soil	MRYLVPPIVIPILLVIGVAAYALFGPPIVPAGHSPA
Ga0210395_100012024	3300020582	Soil	VKYLVPPIVIPVLLFIGVVSYALLRPPLVVGHPVAPVSIAQPR
Ga0210395_104805053	3300020582	Soil	MKYLVPPIVIPVLLFIGVVAYGVLRPPMIVGHPPFPAANSQ
Ga0210401_102591974	3300020583	Soil	MKYLVPPIVIPALLLVGVVAYGMLKPLIIVGHPAVPLAHSLPR
Ga0210401_111077212	3300020583	Soil	MKYLVPPIVIPVLLFIGVVAYGMLRPPIIVGHAPAPAASAQP
Ga0210404_101676703	3300021088	Soil	MKYLVPPIVIPVLLFIGVVAYGVLRPPMIVGHPPFPAAN
Ga0210404_102520863	3300021088	Soil	ENLMKYLVPPIVIPVLLFIGVVAYGVLRPPMIVGHPPFPAANSQPR
Ga0210406_113050572	3300021168	Soil	MKYLVPPIVIPVLLFIGIAAYGILRPPITVDHPPTPA
Ga0213873_100173022	3300021358	Rhizosphere	MRYLVPPIVIPVLLFLGIMAYWLLGPPIVDAGHAPASAVSSQSR
Ga0210387_110529122	3300021405	Soil	MKYLVPPIVIPVLLFIGIAAYAMLRPPIIVGHAPAPAASAQPR
Ga0210384_116455802	3300021432	Soil	MKYLVPPIVIPILLVIGITAYALFRPPIVAGHPPVPVATS
Ga0210390_100096685	3300021474	Soil	MKYLVPPVVIPMLLFIGIVAYALLRPPIVVGHSLAPVPIAQPR
Ga0187846_100059968	3300021476	Biofilm	MRYLVPPIVIPILLLIGVVAYGLFGPPIVAAGHHPLPH
Ga0187846_100122112	3300021476	Biofilm	MRYLVPPIVIPILLVIGVAAYGLFGPPIAAAGHHPASSLNWQPR
Ga0187846_100234292	3300021476	Biofilm	MKYLVPPIVIPILLFIGVAVYTLLGPPIVAGGHPPAAAVNAQPR
Ga0210402_106504441	3300021478	Soil	MKYLVPPIVIPVLLFVGIAAYAMLRPPIIVGHAPAPAASAQP
Ga0210402_117465722	3300021478	Soil	MKYLVPPIVIPVLLFIGVVAYGVLRPPMIVGHLPFLAAKSQPR
Ga0210410_100813673	3300021479	Soil	MKYLVPPIVIPVLLFIGIAAYGMLRPPITVDHPPAPAAISQSR
Ga0126371_100322109	3300021560	Tropical Forest Soil	MKYLVPPIVIPFLLVIGIVAYGMLKSPNIDGHSPAPAVSSQSR
Ga0242654_103512902	3300022726	Soil	MKFLVPPLVIPVLLFVGVVAYGLLKPPIIVGHPPSPAANSQ
Ga0242654_103869092	3300022726	Soil	MKYLVPPIVIPVLLIIGVLAYGMLKPPIITGHSPV
Ga0247553_1003242	3300023672	Soil	MKYLVPPIVIPVLLFIGVVAYGMLKPPIIVGHPPVPAVNSQPR
Ga0207693_100145124	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MKYLVPPIVIPALLFIGVVAYGMLRPPINVAHSPVPAANSQPR
Ga0209686_10984482	3300026315	Soil	MKYLVPPIVIPVLLFIGVVAYGMLKPPIIVGQPPVPAANSQHR
Ga0209473_11858642	3300026330	Soil	MGSTVKYLVPPIVIPVLLFIGVVAYGTLKPPIIVGQPPVPAANSQHR
Ga0257150_10159402	3300026356	Soil	SGNTMKYLVPPIVIPVLLFIGVVAYGVLRPPVIVGHPPVPVANSQAR
Ga0257161_11187771	3300026508	Soil	MKYLVPPIVIPVLLFIGIAAYGMLRPPITVDHPPAPA
Ga0209156_103228761	3300026547	Soil	MKYLVPPIVIPVLLFIGVVAYGMLKPPIIVGQLPVPAANSQQR
Ga0209577_107682912	3300026552	Soil	MGSTVKYLVPPIVIPVLLFIGVVAYGMLKPPIIVGQPPVPAANSQH
Ga0208097_10004166	3300027173	Forest Soil	MKYLVPPIVIPVLLIIGVLAYGMLKPPIIAGHSPVPVADSRTR
Ga0209446_10072186	3300027698	Bog Forest Soil	MRYLVPPIVIPILLFLGVAAYGLFGPPIVAAGHHPASSLNSQPR
Ga0207862_12349181	3300027703	Tropical Forest Soil	APLRGKTMKYLVPPIVIPVLLVIGIAAYAILEPLTVAVHPPVPAEISQPR
Ga0209006_110510722	3300027908	Forest Soil	MKYLVPPIVIPVLLFIGIVAYGMLKPPIFVGYPPVPAANLQP
Ga0307482_10413573	3300030730	Hardwood Forest Soil	MKYLVPPIVIPILLFIGVAAYGLLRPPIVAVGHLPA
Ga0265763_10043801	3300030763	Soil	MKYLVPPIVIPVLLFIGVVAYGILRPPMIVGHPPFPAANSQP
Ga0308178_10014751	3300030990	Soil	MKYLVPPIVIPVLLFIGVAAYGMLRPPIIVDHPPAAAASSQPR
Ga0308178_10084242	3300030990	Soil	MKFLVPPIVIPVLLFVGVVAYGLLKPPIIVGHPPFPAANAQPR
Ga0308178_10223843	3300030990	Soil	MKYLVPPIVIPILLCIRVVAYAILKPPITVEHSPAPAAISQGVTK
Ga0170834_1002994813	3300031057	Forest Soil	MKYLVPPIVIPILLFIGVAAYGLFGPPIVGVGHHPASSMSAQPR
Ga0170822_123914586	3300031122	Forest Soil	MKYLVPPIVIPVLLIIGVLAYGVLKPPIIAGHSPIPVADSRTR
Ga0170822_139975453	3300031122	Forest Soil	MRYLVPPIVIPILLFIGVAAYGLFGPPIVGVGHHPASSMSAQPR
Ga0170823_136971831	3300031128	Forest Soil	MKYLVPPIVIPALLFIGIAAYAILRPPIIVGHVSAPATSAQPR
Ga0170824_1026907222	3300031231	Forest Soil	MRYLVPPIVIPILLVIGVAAYALFGPPIVPAGHSPASALTSQPR
Ga0170824_1106817153	3300031231	Forest Soil	MRYLVPPIVIPILLVLGVAAYGLFGPPIVDAGHHPASSLNSQAR
Ga0170824_1140606031	3300031231	Forest Soil	MKYLVPPIVIPVLLVIGIAAYAMLGPPIVAGHSPVPV
Ga0170820_162794871	3300031446	Forest Soil	MRYLVPPIVIPILLVLGVAAYGLFGPPVVDAGHHPASSL
Ga0170820_176780062	3300031446	Forest Soil	MKYLVPPIVIPVLLFIGIAAYAMLRPPIIVGHAPAP
Ga0170818_1040939022	3300031474	Forest Soil	MKYLVPPIVIPVLLVIGIAAYAMLGPPIVAGHSPVPVTTSQPR
Ga0318516_103479752	3300031543	Soil	MKYLVPPIVIPIPLFIGVAAYGLLRPPIVAVSHLPAAAANSQPG
Ga0318541_100311183	3300031545	Soil	MRYLVPPIVIPFLLFISVAAYALFGPPTVGAGHPPASVLNSQPR
Ga0318541_103567822	3300031545	Soil	MKYLVPPIVIPILLFIGVAAYGLFGPPIVAAGNHPTSSLNSQPR
Ga0307480_10096982	3300031677	Hardwood Forest Soil	KYLVPPIVIPVLLFIGVVAYGMLRPPIIVAHPPVPVANSQAR
Ga0318572_103994432	3300031681	Soil	ENMKYLVPPIVIPILLFIGVAAYGLFGPPIVAAGNHPTSSLNSQPR
Ga0318560_100727814	3300031682	Soil	MKYLVPPIVIPILLFIGVAAYGLLRPPIVAVSHLPAAAANSQPG
Ga0318560_103444283	3300031682	Soil	VRFFLHGKLMKYVVPPIVIPILLFIGVVAYGLFGPPIIAGGHPSATAMNTQPR
Ga0310686_1102911231	3300031708	Soil	MKYLVPPIVIPALLFVGIVTYGMLRPPIIGGHPPM
Ga0307476_100462212	3300031715	Hardwood Forest Soil	VKYLVPPVVIPVLLFIGIVSYALLKPPLPVGHSVAPVVNAQPR
Ga0306917_111875923	3300031719	Soil	HGKLMKYVVPPIVIPILLFIGVVAYGLFGPPIIAGGHPSATAMNTQPR
Ga0318537_100238804	3300031763	Soil	MKYLVPPIVIPILLFIGIVAYGMLRPPITVDHPPAPAA
Ga0318552_100065435	3300031782	Soil	MKYLVTPIVIPILLFIGVAAYGLFGPPIVAAGNHPTSSLNSQPR
Ga0318550_100744234	3300031797	Soil	MKYLVPPIVIPILLFIGVAAYGLFGPPIVAAGNHPASSLNSQPR
Ga0318567_106566231	3300031821	Soil	AKKTMKYLVPPIVIPILLFIGVAAYGLFGPPIVAAGNHPTSSLNSQPR
Ga0310917_104372021	3300031833	Soil	HGKLMKYVVPPIVIPILLFIGVVAYGLFGPPIIAGGHPSATAVNTQPR
Ga0310917_104790981	3300031833	Soil	IPILLFIGVAAYGLFGPPIVAAGHTPASVLTSQPR
Ga0318517_101683351	3300031835	Soil	MRYLVPPIVIPFLLFISVAAYALFGPPTVGAGHPPA
Ga0318495_101650691	3300031860	Soil	MKYLVPPIVIPVLLFIGIAAYAMLRTPIIVGHAPAPAASA
Ga0316036_1173762	3300031871	Soil	LVPPIVIPILLFIGVAAYGLLRPPIVAVGHLPAAAANSQSR
Ga0306919_101008512	3300031879	Soil	MKYLVPPIVIPILLFIGIVAYGMLRPPITVDHPPAPAATSESR
Ga0306921_102049312	3300031912	Soil	MKYVVPPIVIPILLFIGVVAYGLFGPPIIAGGHPSATAVNTQPR
Ga0306921_119477992	3300031912	Soil	PIRVTARKALRYFVPPIVIPILLFIGVAAYGLFGPPIVAAGHTPASVLTSQPR
Ga0318530_103693491	3300031959	Soil	LVPPIVIPILLFIGVAAYGLLRPPIVAVGHLPAAAANSQPG
Ga0307479_110576131	3300031962	Hardwood Forest Soil	MKYLVPPIVIPVLLFIGVIAYAALRPPIIAAHPLAAVVNSQPR
Ga0307479_117126001	3300031962	Hardwood Forest Soil	MKYLVPPIVIPILLFIGVAAYGLFGPPIVAAGDHPVSSLNSQPR
Ga0318575_102820943	3300032055	Soil	MKYLVPPIVIPIPLFIGVAAYGLLRPPIVAVSHLPAA
Ga0318504_103132091	3300032063	Soil	ARKTMRYLVPPIVIPFLLFISVAAYALFGPPTVGAGHPPASVLNSQPR
Ga0318577_100120928	3300032091	Soil	VHLARKTMKYLVPPIVIPILLFIGVAAYGLLRPPIVAVGHLPAAAANSQPG
Ga0318577_100978651	3300032091	Soil	MKYLVPPIVIPILLFIGVAAYGLLRPPIVAVGHLPAAA
Ga0318540_100256864	3300032094	Soil	MKYLVPPIVIPIPLFIGVAAYGLLRPPIVAVGHLPAAAANSQPG
Ga0307470_111670121	3300032174	Hardwood Forest Soil	ARKTMKYLVPPIVIPILLFIGVAAYGLLRPPIVAVGHLPAAAANSQPG
Ga0307471_1039729101	3300032180	Hardwood Forest Soil	MKYLVPPIVIPVLLFIGIAAYAMLRPPIIVGHAPAPAANAQPR
Ga0307471_1043414822	3300032180	Hardwood Forest Soil	MKYLVPPIVIPILLFIGVAAYALFGPPIVATGHTPASALTSQPR
Ga0348332_105367102	3300032515	Plant Litter	VKYLVPPIVIPVLLVVGVVAYALLRPPLVIGHPVAPVVNAQPR
Ga0348332_144560852	3300032515	Plant Litter	MKYLVPPIVIPALLFVGIVAYGMLRPPIIGDHPPVSVSSQTR
Ga0348332_146328522	3300032515	Plant Litter	MKYLVPPIVIPVLLVIGIAAYALLKPPTIVSHSPTAAENAQLR
Ga0348332_146821453	3300032515	Plant Litter	VKYVIPPIVVPLLIFIGIIAYALLRPPLVVGHSVEPVVN
Ga0335074_103563113	3300032895	Soil	VKYFVPPIVIPALIFIGIVSYALLRPPLVVGHSVAPAVSAPPR
Ga0335075_1001339720	3300032896	Soil	VKYFVPPIVIPALIFIGIVSYALLRPPLVVGHSVAPAVSAQPR
Ga0318519_102406943	3300033290	Soil	MKYLVPPIVIPILLFIGVAAYGLFGPPIVAAGNHPTSSLNS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F029191

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences