NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F030800

Metagenome / Metatranscriptome Family F030800

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F030800
Family Type Metagenome / Metatranscriptome
Number of Sequences 184
Average Sequence Length 43 residues
Representative Sequence VPAGAIVKFPNAVMHDVRNLGTERCVIMFLKVNPKVLKGNHDG
Number of Associated Samples 164
Number of Associated Scaffolds 184

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 3.80 %
% of genes near scaffold ends (potentially truncated) 92.93 %
% of genes from short scaffolds (< 2000 bps) 86.96 %
Associated GOLD sequencing projects 152
AlphaFold2 3D model prediction Yes
3D model pTM-score0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (87.500 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil
(12.500 % of family members)
Environment Ontology (ENVO) Unclassified
(29.348 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(37.500 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 14.08%    Coil/Unstructured: 85.92%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.42
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 184 Family Scaffolds
PF07746LigA 59.24
PF02900LigB 23.91
PF07883Cupin_2 3.26
PF13474SnoaL_3 2.17
PF12900Pyridox_ox_2 1.63
PF03972MmgE_PrpD 0.54
PF01451LMWPc 0.54
PF00501AMP-binding 0.54
PF03928HbpS-like 0.54
PF03795YCII 0.54
PF13518HTH_28 0.54
PF03070TENA_THI-4 0.54
PF01243Putative_PNPOx 0.54
PF03069FmdA_AmdA 0.54
PF04542Sigma70_r2 0.54
PF01553Acyltransferase 0.54
PF01590GAF 0.54

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 184 Family Scaffolds
COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)Transcription [K] 0.54
COG1191DNA-directed RNA polymerase specialized sigma subunitTranscription [K] 0.54
COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 familyTranscription [K] 0.54
COG20792-methylcitrate dehydratase PrpDCarbohydrate transport and metabolism [G] 0.54
COG2350YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHisSecondary metabolites biosynthesis, transport and catabolism [Q] 0.54
COG2421Acetamidase/formamidaseEnergy production and conversion [C] 0.54
COG4941Predicted RNA polymerase sigma factor, contains C-terminal TPR domainTranscription [K] 0.54


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms87.50 %
UnclassifiedrootN/A12.50 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000443|F12B_10034194All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium724Open in IMG/M
3300000559|F14TC_100704772All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria1079Open in IMG/M
3300000953|JGI11615J12901_11588686All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria964Open in IMG/M
3300000955|JGI1027J12803_105428684All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium534Open in IMG/M
3300000955|JGI1027J12803_109115512All Organisms → cellular organisms → Bacteria2088Open in IMG/M
3300000955|JGI1027J12803_109272835All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1124Open in IMG/M
3300001139|JGI10220J13317_12231234All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium517Open in IMG/M
3300002886|JGI25612J43240_1073252All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria535Open in IMG/M
3300002912|JGI25386J43895_10200150Not Available501Open in IMG/M
3300003267|soilL1_10014153All Organisms → cellular organisms → Bacteria → Proteobacteria1066Open in IMG/M
3300003999|Ga0055469_10170288All Organisms → cellular organisms → Bacteria → Proteobacteria669Open in IMG/M
3300004052|Ga0055490_10215829Not Available584Open in IMG/M
3300004267|Ga0066396_10041425All Organisms → cellular organisms → Bacteria → Proteobacteria710Open in IMG/M
3300004479|Ga0062595_101252148All Organisms → cellular organisms → Bacteria → Proteobacteria663Open in IMG/M
3300004480|Ga0062592_101274413All Organisms → cellular organisms → Bacteria → Proteobacteria692Open in IMG/M
3300005178|Ga0066688_10341011All Organisms → cellular organisms → Bacteria → Proteobacteria970Open in IMG/M
3300005329|Ga0070683_101036610All Organisms → cellular organisms → Bacteria788Open in IMG/M
3300005332|Ga0066388_102405780All Organisms → cellular organisms → Bacteria → Proteobacteria955Open in IMG/M
3300005332|Ga0066388_103217725All Organisms → cellular organisms → Bacteria834Open in IMG/M
3300005332|Ga0066388_108005444All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium528Open in IMG/M
3300005345|Ga0070692_10748649All Organisms → cellular organisms → Bacteria → Proteobacteria662Open in IMG/M
3300005406|Ga0070703_10526537All Organisms → cellular organisms → Bacteria536Open in IMG/M
3300005445|Ga0070708_101334178All Organisms → cellular organisms → Bacteria670Open in IMG/M
3300005446|Ga0066686_10414597All Organisms → cellular organisms → Bacteria → Proteobacteria920Open in IMG/M
3300005468|Ga0070707_100570531All Organisms → cellular organisms → Bacteria → Proteobacteria1094Open in IMG/M
3300005468|Ga0070707_101256534All Organisms → cellular organisms → Bacteria707Open in IMG/M
3300005518|Ga0070699_101073714All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria739Open in IMG/M
3300005518|Ga0070699_101680368Not Available581Open in IMG/M
3300005543|Ga0070672_100474538All Organisms → cellular organisms → Bacteria1080Open in IMG/M
3300005549|Ga0070704_102250221All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium507Open in IMG/M
3300005556|Ga0066707_10039915All Organisms → cellular organisms → Bacteria2661Open in IMG/M
3300005561|Ga0066699_10414580All Organisms → cellular organisms → Bacteria → Proteobacteria964Open in IMG/M
3300005569|Ga0066705_10949171All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium510Open in IMG/M
3300005574|Ga0066694_10215351All Organisms → cellular organisms → Bacteria → Proteobacteria911Open in IMG/M
3300005578|Ga0068854_100462076All Organisms → cellular organisms → Bacteria → Proteobacteria1062Open in IMG/M
3300005598|Ga0066706_10082606All Organisms → cellular organisms → Bacteria2284Open in IMG/M
3300005598|Ga0066706_11043961All Organisms → cellular organisms → Bacteria → Proteobacteria627Open in IMG/M
3300005617|Ga0068859_102949028Not Available520Open in IMG/M
3300005718|Ga0068866_10768313All Organisms → cellular organisms → Bacteria → Proteobacteria667Open in IMG/M
3300005719|Ga0068861_102029220All Organisms → cellular organisms → Bacteria → Proteobacteria574Open in IMG/M
3300005764|Ga0066903_108876931Not Available510Open in IMG/M
3300005841|Ga0068863_101728565All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales635Open in IMG/M
3300005843|Ga0068860_101218786All Organisms → cellular organisms → Bacteria → Proteobacteria773Open in IMG/M
3300005875|Ga0075293_1005182All Organisms → cellular organisms → Bacteria1327Open in IMG/M
3300005883|Ga0075299_1025831All Organisms → cellular organisms → Bacteria609Open in IMG/M
3300006049|Ga0075417_10096293All Organisms → cellular organisms → Bacteria1338Open in IMG/M
3300006058|Ga0075432_10477348All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium552Open in IMG/M
3300006196|Ga0075422_10012496All Organisms → cellular organisms → Bacteria2791Open in IMG/M
3300006806|Ga0079220_10237138All Organisms → cellular organisms → Bacteria → Proteobacteria1081Open in IMG/M
3300006845|Ga0075421_101855294All Organisms → cellular organisms → Bacteria → Proteobacteria647Open in IMG/M
3300006871|Ga0075434_101628135All Organisms → cellular organisms → Bacteria → Proteobacteria654Open in IMG/M
3300006881|Ga0068865_102200572All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium502Open in IMG/M
3300006903|Ga0075426_10567832All Organisms → cellular organisms → Bacteria → Proteobacteria846Open in IMG/M
3300006914|Ga0075436_100262541All Organisms → cellular organisms → Bacteria1232Open in IMG/M
3300006954|Ga0079219_10092967All Organisms → cellular organisms → Bacteria1457Open in IMG/M
3300006969|Ga0075419_11478165Not Available509Open in IMG/M
3300007255|Ga0099791_10603968Not Available536Open in IMG/M
3300009012|Ga0066710_100385910All Organisms → cellular organisms → Bacteria → Proteobacteria2083Open in IMG/M
3300009088|Ga0099830_10177286All Organisms → cellular organisms → Bacteria → Proteobacteria1656Open in IMG/M
3300009090|Ga0099827_11369773All Organisms → cellular organisms → Bacteria616Open in IMG/M
3300009100|Ga0075418_10110211All Organisms → cellular organisms → Bacteria2923Open in IMG/M
3300009137|Ga0066709_102274649All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales744Open in IMG/M
3300009147|Ga0114129_11558516All Organisms → cellular organisms → Bacteria810Open in IMG/M
3300009156|Ga0111538_12131091All Organisms → cellular organisms → Bacteria705Open in IMG/M
3300009156|Ga0111538_12591577All Organisms → cellular organisms → Bacteria636Open in IMG/M
3300009162|Ga0075423_12981296Not Available519Open in IMG/M
3300009553|Ga0105249_10089880All Organisms → cellular organisms → Bacteria2870Open in IMG/M
3300009777|Ga0105164_10144351All Organisms → cellular organisms → Bacteria → Proteobacteria1222Open in IMG/M
3300009803|Ga0105065_1026984All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales715Open in IMG/M
3300009808|Ga0105071_1082614All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium562Open in IMG/M
3300009816|Ga0105076_1097349All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium568Open in IMG/M
3300009836|Ga0105068_1057782All Organisms → cellular organisms → Bacteria → Proteobacteria710Open in IMG/M
3300009837|Ga0105058_1112692All Organisms → cellular organisms → Bacteria644Open in IMG/M
3300010046|Ga0126384_11308396All Organisms → cellular organisms → Bacteria → Proteobacteria672Open in IMG/M
3300010047|Ga0126382_10730303All Organisms → cellular organisms → Bacteria → Proteobacteria835Open in IMG/M
3300010047|Ga0126382_11602783All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium604Open in IMG/M
3300010304|Ga0134088_10640969All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium530Open in IMG/M
3300010321|Ga0134067_10134758All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium871Open in IMG/M
3300010325|Ga0134064_10110694All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria913Open in IMG/M
3300010359|Ga0126376_11901805All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium635Open in IMG/M
3300010359|Ga0126376_12006105Not Available620Open in IMG/M
3300010360|Ga0126372_10639703All Organisms → cellular organisms → Bacteria1028Open in IMG/M
3300010360|Ga0126372_11272832All Organisms → cellular organisms → Bacteria763Open in IMG/M
3300010362|Ga0126377_13517467All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium507Open in IMG/M
3300010366|Ga0126379_10553491All Organisms → cellular organisms → Bacteria1230Open in IMG/M
3300010376|Ga0126381_103006824Not Available670Open in IMG/M
3300011270|Ga0137391_10005726All Organisms → cellular organisms → Bacteria9632Open in IMG/M
3300011429|Ga0137455_1107500All Organisms → cellular organisms → Bacteria → Proteobacteria820Open in IMG/M
3300012096|Ga0137389_10273192All Organisms → cellular organisms → Bacteria1426Open in IMG/M
3300012189|Ga0137388_11969450All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium513Open in IMG/M
3300012198|Ga0137364_11447567Not Available507Open in IMG/M
3300012204|Ga0137374_10300040All Organisms → cellular organisms → Bacteria → Proteobacteria1318Open in IMG/M
3300012204|Ga0137374_10310537All Organisms → cellular organisms → Bacteria → Proteobacteria1289Open in IMG/M
3300012208|Ga0137376_10502197All Organisms → cellular organisms → Bacteria → Proteobacteria1052Open in IMG/M
3300012226|Ga0137447_1114447Not Available542Open in IMG/M
3300012285|Ga0137370_10184981All Organisms → cellular organisms → Bacteria → Proteobacteria1217Open in IMG/M
3300012351|Ga0137386_11216333All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium526Open in IMG/M
3300012355|Ga0137369_10005532All Organisms → cellular organisms → Bacteria → Proteobacteria12832Open in IMG/M
3300012357|Ga0137384_10040981All Organisms → cellular organisms → Bacteria → Proteobacteria3821Open in IMG/M
3300012359|Ga0137385_10788631All Organisms → cellular organisms → Bacteria790Open in IMG/M
3300012685|Ga0137397_10093903All Organisms → cellular organisms → Bacteria2193Open in IMG/M
3300012904|Ga0157282_10427030Not Available504Open in IMG/M
3300012948|Ga0126375_10555679All Organisms → cellular organisms → Bacteria867Open in IMG/M
3300012977|Ga0134087_10007992All Organisms → cellular organisms → Bacteria3544Open in IMG/M
3300013308|Ga0157375_13602453Not Available515Open in IMG/M
3300014154|Ga0134075_10222659All Organisms → cellular organisms → Bacteria → Proteobacteria813Open in IMG/M
3300014259|Ga0075311_1033459All Organisms → cellular organisms → Bacteria → Proteobacteria959Open in IMG/M
3300014308|Ga0075354_1116634All Organisms → cellular organisms → Bacteria576Open in IMG/M
3300014885|Ga0180063_1069274All Organisms → cellular organisms → Bacteria → Proteobacteria1040Open in IMG/M
3300014968|Ga0157379_10829353All Organisms → cellular organisms → Bacteria → Proteobacteria874Open in IMG/M
3300014968|Ga0157379_11687300All Organisms → cellular organisms → Bacteria → Proteobacteria620Open in IMG/M
3300015053|Ga0137405_1282887All Organisms → cellular organisms → Bacteria → Proteobacteria1316Open in IMG/M
3300015371|Ga0132258_13785414All Organisms → cellular organisms → Bacteria1031Open in IMG/M
3300015372|Ga0132256_101780117All Organisms → cellular organisms → Bacteria724Open in IMG/M
3300015372|Ga0132256_102984049Not Available569Open in IMG/M
3300015372|Ga0132256_103397735All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium535Open in IMG/M
3300016341|Ga0182035_11001802All Organisms → cellular organisms → Bacteria740Open in IMG/M
3300017973|Ga0187780_11059019All Organisms → cellular organisms → Bacteria592Open in IMG/M
3300018063|Ga0184637_10453323All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria754Open in IMG/M
3300018064|Ga0187773_10057500All Organisms → cellular organisms → Bacteria1810Open in IMG/M
3300018077|Ga0184633_10200908All Organisms → cellular organisms → Bacteria → Proteobacteria1030Open in IMG/M
3300018079|Ga0184627_10303461All Organisms → cellular organisms → Bacteria837Open in IMG/M
3300018431|Ga0066655_10468993All Organisms → cellular organisms → Bacteria → Proteobacteria832Open in IMG/M
3300018468|Ga0066662_11916874All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria620Open in IMG/M
3300019259|Ga0184646_1458170All Organisms → cellular organisms → Bacteria2003Open in IMG/M
3300020170|Ga0179594_10207455All Organisms → cellular organisms → Bacteria735Open in IMG/M
3300020580|Ga0210403_10257050All Organisms → cellular organisms → Bacteria → Proteobacteria1433Open in IMG/M
3300020583|Ga0210401_11643857All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium500Open in IMG/M
3300025560|Ga0210108_1101573Not Available575Open in IMG/M
3300025899|Ga0207642_10904554All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium565Open in IMG/M
3300025904|Ga0207647_10749025Not Available529Open in IMG/M
3300025914|Ga0207671_11221712Not Available587Open in IMG/M
3300025930|Ga0207701_11487092All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium549Open in IMG/M
3300025937|Ga0207669_11559500All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium564Open in IMG/M
3300025986|Ga0207658_10661509All Organisms → cellular organisms → Bacteria942Open in IMG/M
3300026088|Ga0207641_11336439All Organisms → cellular organisms → Bacteria717Open in IMG/M
3300026118|Ga0207675_100672105All Organisms → cellular organisms → Bacteria → Proteobacteria1043Open in IMG/M
3300026314|Ga0209268_1018610All Organisms → cellular organisms → Bacteria2586Open in IMG/M
3300026317|Ga0209154_1093288All Organisms → cellular organisms → Bacteria1288Open in IMG/M
3300026329|Ga0209375_1021217All Organisms → cellular organisms → Bacteria → Proteobacteria3718Open in IMG/M
3300026330|Ga0209473_1158726All Organisms → cellular organisms → Bacteria908Open in IMG/M
3300026335|Ga0209804_1261380All Organisms → cellular organisms → Bacteria → Proteobacteria627Open in IMG/M
3300026343|Ga0209159_1006948All Organisms → cellular organisms → Bacteria7063Open in IMG/M
3300026528|Ga0209378_1000072All Organisms → cellular organisms → Bacteria65011Open in IMG/M
3300026536|Ga0209058_1014417All Organisms → cellular organisms → Bacteria5438Open in IMG/M
3300026537|Ga0209157_1097797All Organisms → cellular organisms → Bacteria1400Open in IMG/M
3300026548|Ga0209161_10067828All Organisms → cellular organisms → Bacteria2253Open in IMG/M
3300027006|Ga0209896_1046014All Organisms → cellular organisms → Bacteria503Open in IMG/M
3300027360|Ga0209969_1066740All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium570Open in IMG/M
3300027490|Ga0209899_1073506All Organisms → cellular organisms → Bacteria680Open in IMG/M
3300027577|Ga0209874_1137837All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium557Open in IMG/M
3300027646|Ga0209466_1025432All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1222Open in IMG/M
3300027654|Ga0209799_1040044All Organisms → cellular organisms → Bacteria1045Open in IMG/M
3300027765|Ga0209073_10081698All Organisms → cellular organisms → Bacteria1114Open in IMG/M
3300027815|Ga0209726_10035259All Organisms → cellular organisms → Bacteria → Proteobacteria3773Open in IMG/M
3300027882|Ga0209590_10449369All Organisms → cellular organisms → Bacteria → Proteobacteria833Open in IMG/M
3300027909|Ga0209382_10858615All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae960Open in IMG/M
3300028792|Ga0307504_10029729All Organisms → cellular organisms → Bacteria1436Open in IMG/M
3300028809|Ga0247824_10215079All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria1056Open in IMG/M
(restricted) 3300031150|Ga0255311_1036022All Organisms → cellular organisms → Bacteria1034Open in IMG/M
3300031546|Ga0318538_10152067All Organisms → cellular organisms → Bacteria → Proteobacteria1223Open in IMG/M
3300031682|Ga0318560_10652800Not Available569Open in IMG/M
3300031720|Ga0307469_10071106All Organisms → cellular organisms → Bacteria2306Open in IMG/M
3300031720|Ga0307469_10351069All Organisms → cellular organisms → Bacteria1238Open in IMG/M
3300031731|Ga0307405_11188671All Organisms → cellular organisms → Bacteria659Open in IMG/M
3300031770|Ga0318521_10031061All Organisms → cellular organisms → Bacteria2616Open in IMG/M
3300031793|Ga0318548_10268353All Organisms → cellular organisms → Bacteria → Proteobacteria839Open in IMG/M
3300031819|Ga0318568_10021242All Organisms → cellular organisms → Bacteria3521Open in IMG/M
3300031820|Ga0307473_10934468All Organisms → cellular organisms → Bacteria629Open in IMG/M
3300031820|Ga0307473_11472555All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium515Open in IMG/M
3300031947|Ga0310909_10895967All Organisms → cellular organisms → Bacteria → Proteobacteria729Open in IMG/M
3300031949|Ga0214473_11799675Not Available605Open in IMG/M
3300032002|Ga0307416_102751880All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium588Open in IMG/M
3300032076|Ga0306924_10049951All Organisms → cellular organisms → Bacteria → Proteobacteria4613Open in IMG/M
3300032180|Ga0307471_100618307All Organisms → cellular organisms → Bacteria1243Open in IMG/M
3300032180|Ga0307471_103122829All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium587Open in IMG/M
3300032180|Ga0307471_103699644Not Available541Open in IMG/M
3300032205|Ga0307472_101841817Not Available602Open in IMG/M
3300032205|Ga0307472_102032830All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium576Open in IMG/M
3300033433|Ga0326726_10591310All Organisms → cellular organisms → Bacteria → Proteobacteria1067Open in IMG/M
3300033815|Ga0364946_072788All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium738Open in IMG/M
3300034155|Ga0370498_022659All Organisms → cellular organisms → Bacteria → Proteobacteria1339Open in IMG/M
3300034818|Ga0373950_0148784Not Available534Open in IMG/M
3300034820|Ga0373959_0063894All Organisms → cellular organisms → Bacteria820Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil12.50%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil10.33%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere7.61%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil5.98%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil4.89%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil4.35%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere4.35%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand4.35%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil3.80%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil3.26%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere3.26%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil2.72%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands1.63%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil1.63%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.63%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.63%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.63%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere1.63%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.09%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.09%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil1.09%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands1.09%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil1.09%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.09%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.09%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.09%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere1.09%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.09%
Rhizosphere SoilHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil1.09%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere1.09%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.54%
WastewaterEnvironmental → Aquatic → Freshwater → Drinking Water → Unchlorinated → Wastewater0.54%
GroundwaterEnvironmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater0.54%
Sugarcane Root And Bulk SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil0.54%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere0.54%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil0.54%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil0.54%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil0.54%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.54%
Sandy SoilEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil0.54%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil0.54%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment0.54%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.54%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.54%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.54%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.54%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.54%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.54%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000443Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemlyEnvironmentalOpen in IMG/M
3300000559Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemlyEnvironmentalOpen in IMG/M
3300000953Soil microbial communities from Great Prairies - Kansas Corn soilEnvironmentalOpen in IMG/M
3300000955Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300001139Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soilEnvironmentalOpen in IMG/M
3300002886Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cmEnvironmentalOpen in IMG/M
3300002912Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cmEnvironmentalOpen in IMG/M
3300003267Sugarcane bulk soil Sample L1EnvironmentalOpen in IMG/M
3300003999Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D2EnvironmentalOpen in IMG/M
3300004052Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqC_D2EnvironmentalOpen in IMG/M
3300004267Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBioEnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300005178Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137EnvironmentalOpen in IMG/M
3300005329Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaGEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005345Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaGEnvironmentalOpen in IMG/M
3300005406Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaGEnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005446Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135EnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005543Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaGHost-AssociatedOpen in IMG/M
3300005549Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaGEnvironmentalOpen in IMG/M
3300005556Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156EnvironmentalOpen in IMG/M
3300005561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148EnvironmentalOpen in IMG/M
3300005569Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154EnvironmentalOpen in IMG/M
3300005574Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143EnvironmentalOpen in IMG/M
3300005578Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2Host-AssociatedOpen in IMG/M
3300005598Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155EnvironmentalOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005718Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2Host-AssociatedOpen in IMG/M
3300005719Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300005843Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2Host-AssociatedOpen in IMG/M
3300005875Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_101EnvironmentalOpen in IMG/M
3300005883Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_302EnvironmentalOpen in IMG/M
3300006049Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1Host-AssociatedOpen in IMG/M
3300006058Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1Host-AssociatedOpen in IMG/M
3300006196Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1Host-AssociatedOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300006914Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5Host-AssociatedOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300006969Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3Host-AssociatedOpen in IMG/M
3300007255Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300009777Wastewater microbial communities from Netherlands to study Microbial Dark Matter (Phase II) - VDW unchlorinated drinking waterEnvironmentalOpen in IMG/M
3300009803Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_40_50EnvironmentalOpen in IMG/M
3300009808Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_40_50EnvironmentalOpen in IMG/M
3300009816Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10EnvironmentalOpen in IMG/M
3300009836Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20EnvironmentalOpen in IMG/M
3300009837Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015EnvironmentalOpen in IMG/M
3300010321Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015EnvironmentalOpen in IMG/M
3300010325Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaGEnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300011429Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT600_2EnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012204Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012226Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT400_2EnvironmentalOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012355Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012904Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S029-104C-1EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012977Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014154Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015EnvironmentalOpen in IMG/M
3300014259Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D1EnvironmentalOpen in IMG/M
3300014308Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D1EnvironmentalOpen in IMG/M
3300014885Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_10DEnvironmentalOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300015053Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300017973Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MGEnvironmentalOpen in IMG/M
3300018063Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2EnvironmentalOpen in IMG/M
3300018064Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MGEnvironmentalOpen in IMG/M
3300018077Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1EnvironmentalOpen in IMG/M
3300018079Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1EnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300019259Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300020170Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300025560Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025899Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025904Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025914Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025930Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)EnvironmentalOpen in IMG/M
3300025937Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025986Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026314Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)EnvironmentalOpen in IMG/M
3300026317Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)EnvironmentalOpen in IMG/M
3300026329Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)EnvironmentalOpen in IMG/M
3300026330Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)EnvironmentalOpen in IMG/M
3300026335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)EnvironmentalOpen in IMG/M
3300026343Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)EnvironmentalOpen in IMG/M
3300026528Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)EnvironmentalOpen in IMG/M
3300026536Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)EnvironmentalOpen in IMG/M
3300026537Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)EnvironmentalOpen in IMG/M
3300026548Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)EnvironmentalOpen in IMG/M
3300027006Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_20_30 (SPAdes)EnvironmentalOpen in IMG/M
3300027360Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 PM (SPAdes)Host-AssociatedOpen in IMG/M
3300027490Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10 (SPAdes)EnvironmentalOpen in IMG/M
3300027577Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30 (SPAdes)EnvironmentalOpen in IMG/M
3300027646Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027654Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027765Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)EnvironmentalOpen in IMG/M
3300027815Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)EnvironmentalOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300028792Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_SEnvironmentalOpen in IMG/M
3300028809Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48EnvironmentalOpen in IMG/M
3300031150 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4EnvironmentalOpen in IMG/M
3300031546Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23EnvironmentalOpen in IMG/M
3300031682Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031731Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1Host-AssociatedOpen in IMG/M
3300031770Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17EnvironmentalOpen in IMG/M
3300031793Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21EnvironmentalOpen in IMG/M
3300031819Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031947Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000HEnvironmentalOpen in IMG/M
3300031949Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197EnvironmentalOpen in IMG/M
3300032002Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3Host-AssociatedOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300033433Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MNEnvironmentalOpen in IMG/M
3300033815Sediment microbial communities from East River floodplain, Colorado, United States - 31_s17EnvironmentalOpen in IMG/M
3300034155Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_05D_17EnvironmentalOpen in IMG/M
3300034818Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3Host-AssociatedOpen in IMG/M
3300034820Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
F12B_1003419433300000443SoilVPAGAIVKFPANVPHDVRNLGAERCVIMFLKVNPKVLKAGAGAGA*
F14TC_10070477213300000559SoilGNPLVNEVVVPAGAIVRFPANVPHDVRNLGRERCVIMFLKIXXXXLRVVGGS*
JGI11615J12901_1158868613300000953SoilAIVKFPKSVPHDVRNLGPGRCVIMFLKVNPKILKGPADG*
JGI1027J12803_10542868423300000955SoilKFPANVPHDVRNLGRERCVIMFLKINPKVLRVGGS*
JGI1027J12803_10911551233300000955SoilNSVMHDVRNLGVERCVIMFLKINPKLLKGEPLNG*
JGI1027J12803_10927283523300000955SoilEEVVVPAGAIVKFPANVPHDVRNLGADRCVIMFLKVNPKVLKS*
JGI10220J13317_1223123413300001139SoilVKFPANVPHDVRNLGRERCVIMFLKINPKVLRAGGS*
JGI25612J43240_107325213300002886Grasslands SoilDGEEVVVEAGSIVKFPRSVMHDVRNLGPERCVIMFLKVNPKVLSGKADG*
JGI25386J43895_1020015023300002912Grasslands SoilVVPAGAIIKFPANVPHDVRNLQADRCVIMFLKCSPRVLR*
soilL1_1001415333300003267Sugarcane Root And Bulk SoilAIIDKKIAGEEIVAPAGSIVKAEAFGTDDVRNLGQTRCVIMFLKLNPKVLKG*
Ga0055469_1017028813300003999Natural And Restored WetlandsSIVRFPSRVPHDVRNLSADRCVIMFLKINPKVLQAAADG*
Ga0055490_1021582923300004052Natural And Restored WetlandsGEEVVVEAGSIVKFPRSVAHDVRNLGPERCVIMFLKVNPKALSARADG*
Ga0066396_1004142533300004267Tropical Forest SoilVVPAGSIVKFPNAVLHDVRNLGSTRCVIMFLKVNPKILKGTSDG*
Ga0062595_10125214833300004479SoilVVVPAGAIVKFPANVPHDVRNLGTERCVIMFLKINPKVLKAGS*
Ga0062592_10127441313300004480SoilAGSIVKFPSNVPHDVRNLGSERCVIMFLKVNPKVLKGAAGG*
Ga0066688_1034101133300005178SoilGQEVVVPAGSIVKFPNAVMHDVRNLGTERCVIMFLKVNPKVLKASHDG*
Ga0070683_10103661013300005329Corn RhizosphereEVVVPSGSIVHFPDRVLHDVRNPGPGRCVIMFVKINPKVLRDG*
Ga0066388_10240578013300005332Tropical Forest SoilVVPAGSIVKFPNAVLHDVRNLGSTRCVIMFLKVNPKVLKGTIDG*
Ga0066388_10321772523300005332Tropical Forest SoilVPAGSIVRFPSNVMHDVRNLGVERCVIMFLKINPKLLKESRSNG*
Ga0066388_10800544423300005332Tropical Forest SoilPAGAIVKFPANVPHDVRNLGQERCVIMFLKVNPKVLKAGAGAGA*
Ga0070692_1074864913300005345Corn, Switchgrass And Miscanthus RhizospherePAGAIVKFPANVPHDVRNLGQQRCVIMFLKVNPKVLKAGAGA*
Ga0070703_1052653723300005406Corn, Switchgrass And Miscanthus RhizosphereMSIDGQEVVVPSGSIVHFPDRVLHDVRNPGPGRCVIMFVKINPKVLRDG*
Ga0070708_10133417813300005445Corn, Switchgrass And Miscanthus RhizosphereVPAGAIVKFPAAVPHDVRNLGDDRLVIMFLKVNPKVLKV*
Ga0066686_1041459713300005446SoilSIAGEEVVVPAGAIVQFPASVPHDVRNLGADRCVIMFLKVNPKVLKAGADGAGA*
Ga0070707_10057053113300005468Corn, Switchgrass And Miscanthus RhizosphereGHEIVLPAGSLAKFPNRVTHDVRNLGPERCVIMFFKVNPRVLKESRDG*
Ga0070707_10125653413300005468Corn, Switchgrass And Miscanthus RhizosphereEEVVVPAGAIVKFPAAVPHDVRNLGDDRLVIMFLKVNPKVLKV*
Ga0070699_10107371413300005518Corn, Switchgrass And Miscanthus RhizospherePAGAMVKFPAAVLHDVRNLGTERCVIMFLKVNPKVLKPA*
Ga0070699_10168036823300005518Corn, Switchgrass And Miscanthus RhizosphereFPNAVMHDVRNLGTERCVIMFLKVNPKVLPKTNKDTHDG*
Ga0070672_10047453813300005543Miscanthus RhizosphereYMSIDGQEVVVPSGSIVHFPDRVLHDVRNPGPGRCVIMFVKINPKVLRDG*
Ga0070704_10225022113300005549Corn, Switchgrass And Miscanthus RhizosphereVPAGAIVKFPAAVPHDVRNLGTERCVIMFLKINPKVLKPV*
Ga0066707_1003991513300005556SoilVVVPAGSIVNFPNNVAHDVRNLGAERCVIMFLKVNPKVLKSTMNG*
Ga0066699_1041458013300005561SoilEVVVPAGSIVKFPNAVMHDVRNLGTERCVIMFLKVNPKVLKASHDG*
Ga0066705_1094917113300005569SoilIVKFPNAVLHDVRNLGTERCVIMFIKVNPKVLKG*
Ga0066694_1021535133300005574SoilVKFPSNVPHDVRNLRNERCVIMFIKANPKILRGVSDG*
Ga0068854_10046207613300005578Corn RhizosphereIDGLEVVVEAGSIVKFPRSVMHDVRNLGPERCVIMFLKVNPKVLSAKTDG*
Ga0066706_1008260643300005598SoilFPNSVPHDVRNLGTERCVIMFLKVNPRVLKGSADG*
Ga0066706_1104396133300005598SoilGQEVIVPAGSIVKFPNAVMHDVRNLGTERCVIMFLKVNPKVLKASHDG*
Ga0068859_10294902813300005617Switchgrass RhizosphereGQEVVVPAGALVKFPTQVLHDVRNLGSERCVIMFVKVNPKVLGRGQQEDRDGSRRAL*
Ga0068866_1076831313300005718Miscanthus RhizosphereVPAGAIVKFPANVPHDVRNLGRERCVIMFLKINPKVLRVGGS*
Ga0068861_10202922013300005719Switchgrass RhizosphereVEAGSIVKFPRSVMHDVRNLGPERCVIMFLKVNPKVLSAKADG*
Ga0066903_10887693123300005764Tropical Forest SoilIRFPNNVMHDVRNLGRERCVIMFLKVNPKLLKEPRHG*
Ga0068863_10172856533300005841Switchgrass RhizosphereFPANVPHDVRNLGTERCVIMFLKINPKLLRSGDGAGA*
Ga0068860_10121878633300005843Switchgrass RhizosphereIVRFPNSVMHDVRNLGVERCVIMFLKINPKLLKGEPLNG*
Ga0075293_100518233300005875Rice Paddy SoilGQEVVVPAGSIVRFPRRVMHDVRNPGPGRCVIMFLKVNPKVLRDG*
Ga0075299_102583133300005883Rice Paddy SoilDGQAVVVPAGSIVQFPRRVLHDVRNPGPGRCVIMFLKVNPKALRDG*
Ga0075417_1009629313300006049Populus RhizosphereMSIDGHEITVPAGSIVKFPDNVLHDVRNLGTDRCVIMFVKVNPKILKATGGG*
Ga0075432_1047734813300006058Populus RhizosphereTVPAGAIVKFPANVPHDVRNLSQERCVIMFLKVNPKVLKAGAGA*
Ga0075422_1001249613300006196Populus RhizosphereHMSIGGEDVVVPAGAIVQFPNAVLHDVRNPGPGRCVIMFVKVNPKVLKTSAEEAAHG*
Ga0079220_1023713813300006806Agricultural SoilPAGSIVKFPNNVPHDVRNLGQERCVIMFMKVNPKVLRG*
Ga0075421_10185529413300006845Populus RhizosphereIVKFPHNVPHDVRNLGRERCVIMFIKVNPKVLKG*
Ga0075434_10162813533300006871Populus RhizosphereHEITVPAGSIVKFPNSVPHDVRNLGADRCVIMFVKVNPKVLKGGADG*
Ga0068865_10220057223300006881Miscanthus RhizosphereIVPAGAIVKFPANVPHDVRNLGQQRCVIMFLKVNPKVLKAGAGA*
Ga0075426_1056783213300006903Populus RhizosphereVPAGSIVHFPDRVLHDVRNPGPGRCVIMFVKINPKVLRDG*
Ga0075436_10026254113300006914Populus RhizosphereMSIDGQEVVVPAGSIVHFPDRVLHDVRNLGPGRCVIMFVKINPKVLRDG*
Ga0079219_1009296733300006954Agricultural SoilSIVHFPDRVLHDVRNPGPGRCVIMFVKINPKVLRDG*
Ga0075419_1147816513300006969Populus RhizosphereGGIVRFPHAVPHDVRNLGPDRCVIMFVKLNPKVLKGGGAADG*
Ga0099791_1060396823300007255Vadose Zone SoilAGAIVKFPAAVPHDVRNLGDDRLVIMFIKVNPKLLKG*
Ga0066710_10038591053300009012Grasslands SoilDGQEVVVNAGAIVKFPNAVLHDVRNLGPGRCVIMFLKVNPKVLKTVDGHGPSRST
Ga0099830_1017728613300009088Vadose Zone SoilQEVVVPAGSIVKFPNAVMHDVRNLGTERCVIMFLKVNPKVLKASHDG*
Ga0099827_1136977333300009090Vadose Zone SoilEAGSIVKFPRSVMHDVRNLGPERCVIMFIKVNPKVLRDG*
Ga0075418_1011021113300009100Populus RhizosphereVPAGAIVKFPANVPHDVRNLGQQRCVIMFLKVNPKVLKAGAGA*
Ga0066709_10227464933300009137Grasslands SoilEATDTMSFAGEEVVVPAGAIVQFPASVPRDDRNLGADRCVIMFLKVNPKVLKAGADGAGA
Ga0114129_1155851633300009147Populus RhizosphereVLHDVRNPGPGRCVIMFVKVNPKVLKASAEEAAHG*
Ga0111538_1213109113300009156Populus RhizosphereNVPHDVRNLGSDRCVIMFVKVNPKLLKNAEPARDG*
Ga0111538_1259157713300009156Populus RhizosphereFPSNVPHDVRNLGSERCVIMFLKVNPKVLKGAAGG*
Ga0075423_1298129613300009162Populus RhizosphereVVVPAGAIVKFPAAVPHDVRNLGDDRLVIMFLKVNPKVFRA*
Ga0105249_1008988063300009553Switchgrass RhizosphereAMVKFPAAVLHDVRNLGTERCVIMFLKVNPKVLSAKADG*
Ga0105164_1014435133300009777WastewaterVKFPAAVPHDVRNLGSDRLVIMFVKVNPKVLKGPAHG*
Ga0105065_102698413300009803Groundwater SandVKFPASVPHDVQNRGADRCVIMFLKVNPKVLNARADGAGA*
Ga0105071_108261413300009808Groundwater SandAGAIVKFPATVPHDVRNLGADRCVIMFLKVNPKVLKAGGDSTGA*
Ga0105076_109734913300009816Groundwater SandDGQEVVVPAGALVKFPNRVLHDVRNLGAERCVIMFIKVNPKVLKEGRDG*
Ga0105068_105778233300009836Groundwater SandKFPKSVPHDVRNLGTERCVIMFLKVNPKVISVNG*
Ga0105058_111269213300009837Groundwater SandIVWFPNNIPHDVRNLESERCVIMFIKVNPKVLRGGADG*
Ga0126384_1130839633300010046Tropical Forest SoilDGQEVVVPAGSIVRFPSNVMHDVRNLGVERCVIMFLKINPKVLKESRSNG*
Ga0126382_1073030333300010047Tropical Forest SoilSIVRFPNNVMHDVRNVGTERCVIMFLKINPKLLKESRNG*
Ga0126382_1160278313300010047Tropical Forest SoilMSIDGAEVVVPSGAIVKFPANVPHDVRNLGAERCVIMFLKINPKVLRAGADTAGA*
Ga0134088_1064096923300010304Grasslands SoilPAGAIVKFPANVPHDVRNLGAERCVIMFLKVNPKVLKAGADGAGA*
Ga0134067_1013475813300010321Grasslands SoilEVVVPAGSIVTFPNSVPHDVRNLGTERCVIMFLKVNPRVLKGSADG*
Ga0134064_1011069413300010325Grasslands SoilEIAVDAGSIVKFASNVPHDVRNLRGERCVIMFVKVNPKVLKGSGDG*
Ga0126376_1190180513300010359Tropical Forest SoilGSVVKFPNQVLHDVRNLGGERCVIMFVKVNPKVLKENRDG*
Ga0126376_1200610533300010359Tropical Forest SoilEEVVVPAGSIVKFPNAVLHDVRNLGSTRCVIMFLKVNPKVLKGTIDG*
Ga0126372_1063970333300010360Tropical Forest SoilVVPAGSIVRFPSNVMHDVRNLGVERCVIMFLKINPKLLKESRSNG*
Ga0126372_1127283233300010360Tropical Forest SoilAHMAIDGQELVVPAGSIVKFPNAVMHDVRNLGPDRCVIMFLKVNPKVLPKDARADG*
Ga0126377_1351746713300010362Tropical Forest SoilIVKFPNAVLHDVRNLGTTRCVIMFIKVNPKVLKGTSDG*
Ga0126379_1055349133300010366Tropical Forest SoilQELVVPAGSIVKFPNSVMHDVRNLGPDRCVIMFLKVNPKVLPKDARADG*
Ga0126381_10300682433300010376Tropical Forest SoilEVVVPAGSIVKFPNAVLHDVRNLGSTRCVIMFLKVNPKVLKGASDG*
Ga0137391_10005726123300011270Vadose Zone SoilEVVVPAGTIVKFPASVPHDVRNLGADRCVIMFLKVNPKVLKAQADGAGA*
Ga0137455_110750033300011429SoilIDGEEVVAAAGSIVKFPRSVMHDVRHLGPERCVIMFLKVNPKVLTAKADG*
Ga0137389_1027319243300012096Vadose Zone SoilGSIVKFPNAVMHDVRNLGAERCVIMFLKVNPKVLKAGHDG*
Ga0137388_1196945023300012189Vadose Zone SoilVVVPAGSIVKFPKSVSHDVRNLGSERCVIMFLKVNPRVLKGSADG*
Ga0137364_1144756713300012198Vadose Zone SoilVPAGAIIKFPANVPHDVRNLQSERCVIMFLKCNPRVLK*
Ga0137374_1030004033300012204Vadose Zone SoilTANMSIDGHEVVVRAGSIVKFPNAVMHDVRNLGPGRCVIMFLKVNPKVLKGSHHG*
Ga0137374_1031053713300012204Vadose Zone SoilKFPNAVPHDVRNLTGERAVIMFLKVNPKVLKGGADG*
Ga0137376_1050219733300012208Vadose Zone SoilFPANVPHDVRNLGRERCVIMFLKINPKVLKAGGS*
Ga0137447_111444723300012226SoilKFPAAVPHDVRNLGTERCVIMFLKVNPKVLTAKADG*
Ga0137370_1018498113300012285Vadose Zone SoilIDGREVVVPAGSIVKFPRNVLHDVRNLGPERCVIMFVKVNPRILRGAADG*
Ga0137386_1121633323300012351Vadose Zone SoilSVPHDVRNLGADRCVIMFLKVNPKVLKAGADGAGA*
Ga0137369_10005532193300012355Vadose Zone SoilVPAGAIVKFPNAVMHDVRNLGTERCVIMFLKVNPKVLKGNHDG*
Ga0137384_1004098113300012357Vadose Zone SoilAGSIVKFPNAVLHDVRNLGPERCVIMFLKVNPKVLPKATKDGHDG*
Ga0137385_1078863133300012359Vadose Zone SoilFPNAVMHDVRNLGPERCVIMFLKVNPKVLKGNQDG*
Ga0137397_1009390343300012685Vadose Zone SoilTVPAGAIVKFPANVPHDVRNLGAERCVIMFLKVNPKVLKAGADGAGA*
Ga0157282_1042703023300012904SoilIVKFPRSVMHDVRNLGPERCVIMFLKVNPKVLSAKADG*
Ga0126375_1055567933300012948Tropical Forest SoilPAGAIVKFPANVPHDVRNLGRERCVIMFLKVNPKVLRAGTGAGA*
Ga0134087_1000799263300012977Grasslands SoilEEVVVPAGAIVKFPSNVPHDVRNVQNARCVIMFVKANPKLLRRSSDG*
Ga0157375_1360245323300013308Miscanthus RhizosphereDGHEVVVRAGSIVKFPQAVMHDVRNLGPERCVIMFLKVNPKVLKGQHDG*
Ga0134075_1022265913300014154Grasslands SoilGEEYVVPAGAIIKFPANVDHDVRNLQSERCVIMFLKCNPKVLK*
Ga0075311_103345913300014259Natural And Restored WetlandsIVQFPRNVPHDVRNPGPGRCVIMFLKVNPKVLRGQVDG*
Ga0075354_111663433300014308Natural And Restored WetlandsVKFPRSVMHDVRNLGPERCVIMFLKVNPRVLSTKADG*
Ga0180063_106927433300014885SoilAIVKFPRNVPHDVRNLGPGRCVIMFLKVNPKLFKGQADG*
Ga0157379_1082935313300014968Switchgrass RhizosphereEVVVPAGALVKFPTQVLHDVRNLGSERCVIMFIKVNPKVLRGGQQEGRDG*
Ga0157379_1168730033300014968Switchgrass RhizosphereGSIVKFPRSVMHDVRNLGPERCVIMFLKVNPKVLSAKADG*
Ga0137405_128288713300015053Vadose Zone SoilVVVRAGSIVKFPNAVLHDVRNLGPERCVIMFLKVNPKVLKGSHDG*
Ga0132258_1378541433300015371Arabidopsis RhizosphereEVPAGSIVKFPSNVPHDVRNLGSERCVIMFLKVNPKVLKGAAGG*
Ga0132256_10178011733300015372Arabidopsis RhizosphereAGSIVHFPDRVLHDVRNLGPGRCVIMFVKINPKVLRDG*
Ga0132256_10298404933300015372Arabidopsis RhizosphereAGAIVQFPSAVLHDVRNPGPDRCVIMFLKLNPKVLKASEAAGG*
Ga0132256_10339773523300015372Arabidopsis RhizosphereNMSIDGEEGVVPAGAIVKFPNNVPHDVRNLGPERCVIMFLKVNPKVLRG*
Ga0182035_1100180213300016341SoilEVVVPAGAIVNFPANVPHDVRNLGAERCVIMFLKINPKVLRAGADTAGA
Ga0187780_1105901913300017973Tropical PeatlandEVVVEAGSIVQFPNRVMHDVRNPGPGRCVIMFLKVNPKVLRDG
Ga0184637_1045332313300018063Groundwater SedimentVEAGSIVKFPKSVMHDVRNLGPERCVIMFVKVNPKVLRDG
Ga0187773_1005750013300018064Tropical PeatlandVVPAGAIVKFPANVPHDVRNLGTDRCVIMFLKINPKLLRAGGEAARA
Ga0184633_1020090833300018077Groundwater SedimentVVVPAGSIVKFPNAVMHDVRNLGTERCVIMFLKVNPKVLKGSHDG
Ga0184627_1030346133300018079Groundwater SedimentFPASVPHDVRNLGADRCVIMFLKVNPKVLKARADGAGG
Ga0066655_1046899313300018431Grasslands SoilLAKFPNRVMHDVRNLGPGRCVIMFFKVNPRVLKESRDG
Ga0066662_1191687423300018468Grasslands SoilMSIAGEEVVVPAGAIVKFPASVPHDVRNLGADRCVIMFLKVNPKVLNARADGAGA
Ga0184646_145817043300019259Groundwater SedimentVPAGAIVTFPASVPHDVRNLGADRCVIMFLKVNPKVLKARADGAGA
Ga0179594_1020745513300020170Vadose Zone SoilKFPANVPHDVRNLGSERCVIMFLKINPRLLRAAAS
Ga0210403_1025705013300020580SoilREIVVEAGSIVQFPNSVMHDVRNPGPGRCVIMFLKVNPKVLRDG
Ga0210401_1164385713300020583SoilAGSIVKFPQSVLHDVRNPGPERCVIMFLKVNPKVLRDG
Ga0210108_110157333300025560Natural And Restored WetlandsEVVVPAGAIVKFPSAVMHDVRNLGTERCVIMFLKVNPKVLKGSHDG
Ga0207642_1090455413300025899Miscanthus RhizosphereEVVVPAGAIVKFPANVPHDVRNLGRERCVIMFLKINPKVLRVGGS
Ga0207647_1074902523300025904Corn RhizosphereKFPQAVMHDVRNLGPERCVIMFLKVNPKVLSAKADG
Ga0207671_1122171223300025914Corn RhizosphereDGQEVVVPSGSIVHFPDRVLHDVRNPGPGRCVIMFVKINPKVLRDG
Ga0207701_1148709233300025930Corn, Switchgrass And Miscanthus RhizosphereAIVKFPHNVPHDVRNLGPERCVIMFIKLNPKVLKG
Ga0207669_1155950033300025937Miscanthus RhizosphereMNIDGQEVVVPAGALVKFPTQVLHDVRNLGSERCVIMFIKLNPKVLKG
Ga0207658_1066150913300025986Switchgrass RhizosphereIVHFPDRVLHDVRNPGPGRCVIMFVKINPKVLRDG
Ga0207641_1133643933300026088Switchgrass RhizosphereGAEVVVPAGAIVKFPANVPHDVRNLGTERCVIMFLKINPKLLRSGDGAGA
Ga0207675_10067210533300026118Switchgrass RhizosphereMSIDGLEVGVEAGSIVKFPRSVMHDVRNLGPERCVIMFLKVNPKVLSAKADG
Ga0209268_101861013300026314SoilFPSNVPHDVRNLRNERCVIMFIKANPKILRGVSDG
Ga0209154_109328813300026317SoilIVTFPNSVPHDVRNLGTERCVIMFLKVNPRVLKGSAYG
Ga0209375_102121713300026329SoilGAIVRFPENVPHDVRNLGAERCVIMFLKVNPKVLKAGADGAGA
Ga0209473_115872633300026330SoilIDGREVVVPAGSIVKFPRNVLHDVRNLGPERCVIMFVKVNPKILRGSADG
Ga0209804_126138013300026335SoilIKFPNAVMHDVRNLGTERCVIMFLKVNPKVLKASHDG
Ga0209159_1006948123300026343SoilEVVVPAGSIVNFPNNVAHDVRNLGAERCVIMFLKVNPKVLKSTMNG
Ga0209378_1000072703300026528SoilIVVPAGAIVKFPSNLPHDVRNVQNARCVIMFIKANPKLLRRSSDG
Ga0209058_101441713300026536SoilIVQFPASVPHDVRNLGADRCVIMFLKVNPKVLKAGADGAGA
Ga0209157_109779713300026537SoilAGEEHVVPAGAIIKFPANVPHDVRNLQADRCVIMFLKCNPKVLK
Ga0209161_1006782853300026548SoilDGREVVVPAGSIVKFPSAVMHDVRNLGTERCVIMFLKVNPKVLPRTNTDTHDG
Ga0209896_104601413300027006Groundwater SandSIAGEEVVVPAGGIVKFPKNVPHDVRNLGPGRCVIMFLKVNPKILKSAADG
Ga0209969_106674023300027360Arabidopsis Thaliana RhizosphereAGGIVKFPNNVPHDVRNLGPGRCVIMFLKINPKILKGGADG
Ga0209899_107350613300027490Groundwater SandEIVVEAGSIVKFPKSVMHDVRNLGPERCVIMFLKVNPKMLPKGGDG
Ga0209874_113783733300027577Groundwater SandFPASVPHDVQNRGADRCVIMFLKVNPKVLKAQADGAGA
Ga0209466_102543233300027646Tropical Forest SoilPAGAVVKFPANVPHDVRNLGRERCVIMFLKVNPKVLRAGTGAGA
Ga0209799_104004433300027654Tropical Forest SoilIVKFPNAVLHDVRNLGSTRCVIMFLKVNPKVLKGTSDG
Ga0209073_1008169833300027765Agricultural SoilAGSIVKFPNNVPHDVRNLGQERCVIMFMKVNPKVLRG
Ga0209726_1003525963300027815GroundwaterMSIDGEGVVVEAGSIVKFPRSAMHDVRNLGPERCVIMLLKVSPKVLSGRADG
Ga0209590_1044936913300027882Vadose Zone SoilVVPAGSIVKFPNAVMHDVRNLGTERCVIMFLKVNPKVLPKTNKDTHDG
Ga0209382_1085861533300027909Populus RhizosphereGEEVVVPAGAIVKFPNNVPHDVRNLGPERCVIMFLKVNPKVLRG
Ga0307504_1002972943300028792SoilSIVRFPNNVMHDVRNLGRERCVIMFIKVNPKTLKGSRDG
Ga0247824_1021507933300028809SoilFPKNVPHDVRNRGPGRCVIMFLKVNPRVLKGQADG
(restricted) Ga0255311_103602233300031150Sandy SoilFPANVPHDVRNLGTDRCVIMFLKINPKLLRAGGDGAGA
Ga0318538_1015206733300031546SoilIVKFPANVPHDVRNLGAERCVIMFLKINPKVLRAGADTAGA
Ga0318560_1065280013300031682SoilEVVVRAGSIVKFPNAVLHDVRNLGSTRCVIMFLKVNPKILKGTSDG
Ga0307469_1007110643300031720Hardwood Forest SoilVVVPAGSIVKFPHNVPHDVRNLGADRCVIMFIKVNPKVLKA
Ga0307469_1035106913300031720Hardwood Forest SoilAIVKFPANVPHDVRNLGRERCVIMFLKINPKVLRAGVS
Ga0307405_1118867133300031731RhizosphereVPAGSIVKFPHNVPHDVRNLGPERCVIMFIKLNPKVLKG
Ga0318521_1003106113300031770SoilFPNAVLHDVRNLGSTRCVIMFLKVNPKILKGTSDG
Ga0318548_1026835313300031793SoilVVVRAGSIVKFPNAVLHDVRNLGSTRCVIMFLKVNPKILKGTSDG
Ga0318568_1002124263300031819SoilVVVPAGAIVNFPANVPHDVRNLGAERCVIMFLKINPKVLRAGADTAGA
Ga0307473_1093446833300031820Hardwood Forest SoilVPAGAIVKFPSNVPHDVRNLGAKRCVIMFLKVNPKVLKG
Ga0307473_1147255513300031820Hardwood Forest SoilVVVPAGSIVKFPNGVPHDVRNLGTERCVIMFLKVNPRVLKGSAHG
Ga0310909_1089596733300031947SoilEVVVPAGSIVRFPNNVMHDVRNLGVKRCVIMFLKINPKLLKENRNG
Ga0214473_1179967523300031949SoilMEDEVAVASTTIVQFPANVPHDVRNLGAERCVIMFVKLNPKVLKGAEGRG
Ga0307416_10275188033300032002RhizosphereAGAIVKFPNNVPHDVRNLGPERCVIMFLKVNPKVLRA
Ga0306924_1004995113300032076SoilDEVVVPAGAIVNFPANVPHDVRNLGAERCVIMFLKINPKVLRAGADTAGA
Ga0307471_10061830733300032180Hardwood Forest SoilEVVVPAGSIVKFPQSVLHDVRNPGPERCVIMFLKVNPKVLRDG
Ga0307471_10312282933300032180Hardwood Forest SoilVSVPAGAIVKFPANVPHDVRNLGAERCVIMFLKVNPKILKS
Ga0307471_10369964433300032180Hardwood Forest SoilVKFPNAVMHDVRNLGTERCVIMFLKVNPKVLKASHDG
Ga0307472_10184181713300032205Hardwood Forest SoilSIDGQEVTVPAGAIVQFPSAVLHDVRNPGPDRCVIMFLKLNPKVLKASEAAGG
Ga0307472_10203283013300032205Hardwood Forest SoilKFPNGVPHDVRNLGTERCVIMFLKVNPRVLKGSAHG
Ga0326726_1059131033300033433Peat SoilVKFPKAVMHDVRNLGAERCVIMFLKVNPKVLKGSHDG
Ga0364946_072788_604_7383300033815SedimentVLRAGSVAKFPNKVLHDVRNLGAERCVIMFFKVNPKVLKESPDG
Ga0370498_022659_11_1693300034155Untreated Peat SoilMSIDGADVVVEAGSIVKFPRSVMHDVRNLGPERCVIMFLKVNPRVLSAKADG
Ga0373950_0148784_8_1363300034818Rhizosphere SoilVVVPSGSIVHFPDRVLHDVRNPGPGRCVIMFVKINPKVLRDG
Ga0373959_0063894_657_8063300034820Rhizosphere SoilMSIDGQEVVVPSGSIVHFPDRVLHDVRNPGPGRCVIMFVKINPKVLRDG


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