NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F040562

Metagenome Family F040562

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F040562
Family Type Metagenome
Number of Sequences 161
Average Sequence Length 50 residues
Representative Sequence QYLRHPRPSMLKDYFNPKLHKVLPVHRRLRQVTVKFEVNEVYVPAL
Number of Associated Samples 128
Number of Associated Scaffolds 161

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 77.64 %
% of genes from short scaffolds (< 2000 bps) 74.53 %
Associated GOLD sequencing projects 114
AlphaFold2 3D model prediction Yes
3D model pTM-score0.19

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (75.776 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil
(32.919 % of family members)
Environment Ontology (ENVO) Unclassified
(52.795 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(62.112 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 4.05%    β-sheet: 0.00%    Coil/Unstructured: 95.95%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.19
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 161 Family Scaffolds
PF02388FemAB 14.29
PF00069Pkinase 6.83
PF00171Aldedh 3.73
PF04199Cyclase 2.48
PF12704MacB_PCD 2.48
PF02782FGGY_C 1.86
PF09622DUF2391 1.86
PF02321OEP 1.86
PF13432TPR_16 1.24
PF10646Germane 1.24
PF01416PseudoU_synth_1 1.24
PF01522Polysacc_deac_1 1.24
PF02836Glyco_hydro_2_C 1.24
PF00271Helicase_C 1.24
PF00528BPD_transp_1 1.24
PF01258zf-dskA_traR 1.24
PF13488Gly-zipper_Omp 0.62
PF13483Lactamase_B_3 0.62
PF11141DUF2914 0.62
PF05199GMC_oxred_C 0.62
PF14031D-ser_dehydrat 0.62
PF00160Pro_isomerase 0.62
PF01467CTP_transf_like 0.62
PF00200Disintegrin 0.62
PF09619YscW 0.62
PF02133Transp_cyt_pur 0.62
PF13683rve_3 0.62
PF13722CstA_5TM 0.62
PF03938OmpH 0.62
PF07583PSCyt2 0.62
PF04020Phage_holin_4_2 0.62

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 161 Family Scaffolds
COG0515Serine/threonine protein kinaseSignal transduction mechanisms [T] 27.33
COG2348Lipid II:glycine glycyltransferase (Peptidoglycan interpeptide bridge formation enzyme)Cell wall/membrane/envelope biogenesis [M] 14.29
COG0014Gamma-glutamyl phosphate reductaseAmino acid transport and metabolism [E] 3.73
COG1012Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenaseLipid transport and metabolism [I] 3.73
COG1538Outer membrane protein TolCCell wall/membrane/envelope biogenesis [M] 3.73
COG4230Delta 1-pyrroline-5-carboxylate dehydrogenaseAmino acid transport and metabolism [E] 3.73
COG1878Kynurenine formamidaseAmino acid transport and metabolism [E] 2.48
COG0101tRNA U38,U39,U40 pseudouridine synthase TruATranslation, ribosomal structure and biogenesis [J] 1.24
COG0726Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 familyCell wall/membrane/envelope biogenesis [M] 1.24
COG1734RNA polymerase-binding transcription factor DksATranscription [K] 1.24
COG3250Beta-galactosidase/beta-glucuronidaseCarbohydrate transport and metabolism [G] 1.24
COG0652Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin familyPosttranslational modification, protein turnover, chaperones [O] 0.62
COG1950Uncharacterized membrane protein YvlD, DUF360 familyFunction unknown [S] 0.62
COG2303Choline dehydrogenase or related flavoproteinLipid transport and metabolism [I] 0.62
COG2825Periplasmic chaperone for outer membrane proteins, Skp familyCell wall/membrane/envelope biogenesis [M] 0.62

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms75.78 %
UnclassifiedrootN/A24.22 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002911|JGI25390J43892_10137220All Organisms → cellular organisms → Bacteria → Proteobacteria565Open in IMG/M
3300002916|JGI25389J43894_1054386All Organisms → cellular organisms → Bacteria676Open in IMG/M
3300005172|Ga0066683_10402378All Organisms → cellular organisms → Bacteria → Proteobacteria846Open in IMG/M
3300005186|Ga0066676_10611192All Organisms → cellular organisms → Bacteria739Open in IMG/M
3300005294|Ga0065705_10875301All Organisms → cellular organisms → Bacteria → Proteobacteria584Open in IMG/M
3300005365|Ga0070688_100204009All Organisms → cellular organisms → Bacteria1385Open in IMG/M
3300005445|Ga0070708_101596715All Organisms → cellular organisms → Bacteria607Open in IMG/M
3300005446|Ga0066686_10229157All Organisms → cellular organisms → Bacteria → Proteobacteria1250Open in IMG/M
3300005446|Ga0066686_10832057All Organisms → cellular organisms → Bacteria612Open in IMG/M
3300005451|Ga0066681_10011776All Organisms → cellular organisms → Bacteria → Proteobacteria4277Open in IMG/M
3300005451|Ga0066681_10902628All Organisms → cellular organisms → Bacteria530Open in IMG/M
3300005467|Ga0070706_100345828All Organisms → cellular organisms → Bacteria1386Open in IMG/M
3300005536|Ga0070697_100947592All Organisms → cellular organisms → Bacteria764Open in IMG/M
3300005553|Ga0066695_10190014All Organisms → cellular organisms → Bacteria → Proteobacteria1286Open in IMG/M
3300005554|Ga0066661_10411984All Organisms → cellular organisms → Bacteria → Proteobacteria828Open in IMG/M
3300005558|Ga0066698_10711269All Organisms → cellular organisms → Bacteria661Open in IMG/M
3300005559|Ga0066700_10146050All Organisms → cellular organisms → Bacteria1598Open in IMG/M
3300005566|Ga0066693_10168640All Organisms → cellular organisms → Bacteria → Proteobacteria831Open in IMG/M
3300005574|Ga0066694_10299493All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria766Open in IMG/M
3300005574|Ga0066694_10596785All Organisms → cellular organisms → Bacteria → Proteobacteria514Open in IMG/M
3300005576|Ga0066708_10228706All Organisms → cellular organisms → Bacteria1176Open in IMG/M
3300005576|Ga0066708_11009976All Organisms → cellular organisms → Bacteria517Open in IMG/M
3300005586|Ga0066691_10122461All Organisms → cellular organisms → Bacteria1478Open in IMG/M
3300005587|Ga0066654_10132429All Organisms → cellular organisms → Bacteria1247Open in IMG/M
3300005598|Ga0066706_10580517All Organisms → cellular organisms → Bacteria → Proteobacteria890Open in IMG/M
3300005764|Ga0066903_106291234All Organisms → cellular organisms → Bacteria → Proteobacteria620Open in IMG/M
3300006031|Ga0066651_10086566All Organisms → cellular organisms → Bacteria1551Open in IMG/M
3300006031|Ga0066651_10538640All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales619Open in IMG/M
3300006031|Ga0066651_10695173All Organisms → cellular organisms → Bacteria → Proteobacteria546Open in IMG/M
3300006032|Ga0066696_10297160All Organisms → cellular organisms → Bacteria1048Open in IMG/M
3300006034|Ga0066656_10386935All Organisms → cellular organisms → Bacteria905Open in IMG/M
3300006046|Ga0066652_100818563All Organisms → cellular organisms → Bacteria890Open in IMG/M
3300006046|Ga0066652_101349938All Organisms → cellular organisms → Bacteria670Open in IMG/M
3300006049|Ga0075417_10308727All Organisms → cellular organisms → Bacteria768Open in IMG/M
3300006791|Ga0066653_10361364All Organisms → cellular organisms → Bacteria738Open in IMG/M
3300006794|Ga0066658_10277072All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria898Open in IMG/M
3300006847|Ga0075431_100638035All Organisms → cellular organisms → Bacteria1046Open in IMG/M
3300006847|Ga0075431_100926686All Organisms → cellular organisms → Bacteria840Open in IMG/M
3300006847|Ga0075431_101016560All Organisms → cellular organisms → Bacteria795Open in IMG/M
3300007788|Ga0099795_10359979All Organisms → cellular organisms → Bacteria653Open in IMG/M
3300007790|Ga0105679_10564110All Organisms → cellular organisms → Bacteria1067Open in IMG/M
3300009012|Ga0066710_100326947All Organisms → cellular organisms → Bacteria2257Open in IMG/M
3300009012|Ga0066710_101203669All Organisms → cellular organisms → Bacteria → Proteobacteria1174Open in IMG/M
3300009100|Ga0075418_11858745All Organisms → cellular organisms → Bacteria655Open in IMG/M
3300009137|Ga0066709_100014248All Organisms → cellular organisms → Bacteria7557Open in IMG/M
3300009137|Ga0066709_100089264All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium3721Open in IMG/M
3300009137|Ga0066709_102022633All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium798Open in IMG/M
3300009147|Ga0114129_10340531All Organisms → cellular organisms → Bacteria1989Open in IMG/M
3300009147|Ga0114129_11164249All Organisms → cellular organisms → Bacteria → Proteobacteria962Open in IMG/M
3300010043|Ga0126380_11309992All Organisms → cellular organisms → Bacteria → Terrabacteria group → Abditibacteriota → unclassified Abditibacteriota → Abditibacteriota bacterium631Open in IMG/M
3300010047|Ga0126382_10175897All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis1496Open in IMG/M
3300010047|Ga0126382_11125619All Organisms → cellular organisms → Bacteria698Open in IMG/M
3300010323|Ga0134086_10109064All Organisms → cellular organisms → Bacteria → Proteobacteria984Open in IMG/M
3300010325|Ga0134064_10304408All Organisms → cellular organisms → Bacteria608Open in IMG/M
3300010325|Ga0134064_10377828All Organisms → cellular organisms → Bacteria560Open in IMG/M
3300010326|Ga0134065_10132290All Organisms → cellular organisms → Bacteria857Open in IMG/M
3300010329|Ga0134111_10106920All Organisms → cellular organisms → Bacteria1078Open in IMG/M
3300010329|Ga0134111_10114544All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1044Open in IMG/M
3300010333|Ga0134080_10462418All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium597Open in IMG/M
3300010335|Ga0134063_10508138All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium604Open in IMG/M
3300010337|Ga0134062_10140644All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1066Open in IMG/M
3300010362|Ga0126377_10014875All Organisms → cellular organisms → Bacteria6218Open in IMG/M
3300010364|Ga0134066_10049039All Organisms → cellular organisms → Bacteria1077Open in IMG/M
3300010397|Ga0134124_11105997Not Available809Open in IMG/M
3300010399|Ga0134127_13098650All Organisms → cellular organisms → Bacteria542Open in IMG/M
3300011270|Ga0137391_11216351All Organisms → cellular organisms → Bacteria → Proteobacteria601Open in IMG/M
3300012045|Ga0136623_10435801All Organisms → cellular organisms → Bacteria554Open in IMG/M
3300012198|Ga0137364_10439940All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_4_67_11978Open in IMG/M
3300012198|Ga0137364_11363243All Organisms → cellular organisms → Bacteria526Open in IMG/M
3300012211|Ga0137377_10642367All Organisms → cellular organisms → Bacteria997Open in IMG/M
3300012285|Ga0137370_10724063Not Available618Open in IMG/M
3300012356|Ga0137371_10222917All Organisms → cellular organisms → Bacteria → Acidobacteria1474Open in IMG/M
3300012356|Ga0137371_10854841All Organisms → cellular organisms → Bacteria → Proteobacteria692Open in IMG/M
3300012359|Ga0137385_10638554Not Available892Open in IMG/M
3300012360|Ga0137375_11038449All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium642Open in IMG/M
3300012582|Ga0137358_10476700All Organisms → cellular organisms → Bacteria841Open in IMG/M
3300012684|Ga0136614_11110395All Organisms → cellular organisms → Bacteria540Open in IMG/M
3300012918|Ga0137396_11055529All Organisms → cellular organisms → Bacteria584Open in IMG/M
3300012922|Ga0137394_10106965All Organisms → cellular organisms → Bacteria2360Open in IMG/M
3300012923|Ga0137359_11714954All Organisms → cellular organisms → Bacteria515Open in IMG/M
3300012925|Ga0137419_11323980All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae606Open in IMG/M
3300012927|Ga0137416_11710124All Organisms → cellular organisms → Bacteria574Open in IMG/M
3300012929|Ga0137404_11309455All Organisms → cellular organisms → Bacteria668Open in IMG/M
3300012930|Ga0137407_12273595All Organisms → cellular organisms → Bacteria518Open in IMG/M
3300012944|Ga0137410_10437052Not Available1060Open in IMG/M
3300012944|Ga0137410_11142026All Organisms → cellular organisms → Bacteria668Open in IMG/M
3300012977|Ga0134087_10198281All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium898Open in IMG/M
3300012985|Ga0164308_12084236All Organisms → cellular organisms → Bacteria529Open in IMG/M
3300013306|Ga0163162_13407791All Organisms → cellular organisms → Bacteria507Open in IMG/M
3300014325|Ga0163163_12572493All Organisms → cellular organisms → Bacteria567Open in IMG/M
3300015245|Ga0137409_10598398All Organisms → cellular organisms → Bacteria932Open in IMG/M
3300015264|Ga0137403_10929587All Organisms → cellular organisms → Bacteria719Open in IMG/M
3300015264|Ga0137403_11074545All Organisms → cellular organisms → Bacteria651Open in IMG/M
3300016404|Ga0182037_10547608All Organisms → cellular organisms → Bacteria976Open in IMG/M
3300017654|Ga0134069_1082137All Organisms → cellular organisms → Bacteria → Proteobacteria1038Open in IMG/M
3300017654|Ga0134069_1082367All Organisms → cellular organisms → Bacteria1037Open in IMG/M
3300017657|Ga0134074_1411225All Organisms → cellular organisms → Bacteria502Open in IMG/M
3300018071|Ga0184618_10114887All Organisms → cellular organisms → Bacteria1071Open in IMG/M
3300018079|Ga0184627_10308877All Organisms → cellular organisms → Bacteria829Open in IMG/M
3300018431|Ga0066655_11338069All Organisms → cellular organisms → Bacteria516Open in IMG/M
3300018482|Ga0066669_10377684All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1190Open in IMG/M
3300018482|Ga0066669_11981777All Organisms → cellular organisms → Bacteria545Open in IMG/M
3300025910|Ga0207684_11008718All Organisms → cellular organisms → Bacteria696Open in IMG/M
3300025912|Ga0207707_11094031All Organisms → cellular organisms → Bacteria650Open in IMG/M
3300025961|Ga0207712_10781334All Organisms → cellular organisms → Bacteria838Open in IMG/M
3300026277|Ga0209350_1129217All Organisms → cellular organisms → Bacteria569Open in IMG/M
3300026305|Ga0209688_1049998All Organisms → cellular organisms → Bacteria788Open in IMG/M
3300026310|Ga0209239_1060960All Organisms → cellular organisms → Bacteria → Proteobacteria1673Open in IMG/M
3300026310|Ga0209239_1102815All Organisms → cellular organisms → Bacteria → Proteobacteria1210Open in IMG/M
3300026317|Ga0209154_1152599All Organisms → cellular organisms → Bacteria957Open in IMG/M
3300026324|Ga0209470_1322224All Organisms → cellular organisms → Bacteria562Open in IMG/M
3300026328|Ga0209802_1296013All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium536Open in IMG/M
3300026329|Ga0209375_1096231All Organisms → cellular organisms → Bacteria1339Open in IMG/M
3300026342|Ga0209057_1193778All Organisms → cellular organisms → Bacteria580Open in IMG/M
3300026529|Ga0209806_1266388All Organisms → cellular organisms → Bacteria576Open in IMG/M
3300026530|Ga0209807_1069214All Organisms → cellular organisms → Bacteria1585Open in IMG/M
3300026536|Ga0209058_1069084All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1903Open in IMG/M
3300026537|Ga0209157_1117175All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1238Open in IMG/M
3300026538|Ga0209056_10098310All Organisms → cellular organisms → Bacteria2397Open in IMG/M
3300026542|Ga0209805_1142247All Organisms → cellular organisms → Bacteria1112Open in IMG/M
3300026557|Ga0179587_10661662All Organisms → cellular organisms → Bacteria688Open in IMG/M
3300027909|Ga0209382_10295427All Organisms → cellular organisms → Bacteria1828Open in IMG/M
3300031576|Ga0247727_10528745All Organisms → cellular organisms → Bacteria907Open in IMG/M
3300031912|Ga0306921_12682181All Organisms → cellular organisms → Bacteria → Proteobacteria513Open in IMG/M
3300031947|Ga0310909_11124102All Organisms → cellular organisms → Bacteria638Open in IMG/M
3300034781|Ga0334935_033555All Organisms → cellular organisms → Bacteria1355Open in IMG/M
3300034781|Ga0334935_227221Not Available520Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil32.92%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil16.77%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil11.18%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil8.70%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere6.83%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.11%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil2.48%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil2.48%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere1.86%
Polar Desert SandEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand1.24%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.24%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil1.24%
BiocrustEnvironmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust1.24%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.62%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.62%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.62%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.62%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.62%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.62%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil0.62%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.62%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.62%
SoilEnvironmental → Terrestrial → Soil → Sand → Desert → Soil0.62%
BiofilmEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm0.62%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.62%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.62%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.62%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002911Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cmEnvironmentalOpen in IMG/M
3300002912Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cmEnvironmentalOpen in IMG/M
3300002916Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cmEnvironmentalOpen in IMG/M
3300005167Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121EnvironmentalOpen in IMG/M
3300005172Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132EnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005180Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134EnvironmentalOpen in IMG/M
3300005186Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125EnvironmentalOpen in IMG/M
3300005294Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
3300005340Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaGEnvironmentalOpen in IMG/M
3300005365Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005446Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135EnvironmentalOpen in IMG/M
3300005451Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130EnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005553Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144EnvironmentalOpen in IMG/M
3300005554Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110EnvironmentalOpen in IMG/M
3300005556Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156EnvironmentalOpen in IMG/M
3300005558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147EnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005566Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142EnvironmentalOpen in IMG/M
3300005568Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152EnvironmentalOpen in IMG/M
3300005574Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143EnvironmentalOpen in IMG/M
3300005576Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157EnvironmentalOpen in IMG/M
3300005586Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140EnvironmentalOpen in IMG/M
3300005587Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103EnvironmentalOpen in IMG/M
3300005598Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006031Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100EnvironmentalOpen in IMG/M
3300006032Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145EnvironmentalOpen in IMG/M
3300006034Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105EnvironmentalOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006049Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1Host-AssociatedOpen in IMG/M
3300006791Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102EnvironmentalOpen in IMG/M
3300006794Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107EnvironmentalOpen in IMG/M
3300006847Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300007004Agricultural soil microbial communities from Utah to study Nitrogen management - NC CompostEnvironmentalOpen in IMG/M
3300007788Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2EnvironmentalOpen in IMG/M
3300007790Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projectsEnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010323Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010325Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaGEnvironmentalOpen in IMG/M
3300010326Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010329Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015EnvironmentalOpen in IMG/M
3300010333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015EnvironmentalOpen in IMG/M
3300010337Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010364Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015EnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300012045Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ449 (21.06)EnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012356Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012360Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012684Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ279 (21.06)EnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012977Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300012985Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MGEnvironmentalOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300015054Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015245Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015264Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300017654Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300017657Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015EnvironmentalOpen in IMG/M
3300018071Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1EnvironmentalOpen in IMG/M
3300018079Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1EnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300022694Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coexEnvironmentalOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025912Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025936Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026277Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026305Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142 (SPAdes)EnvironmentalOpen in IMG/M
3300026309Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)EnvironmentalOpen in IMG/M
3300026310Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026317Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)EnvironmentalOpen in IMG/M
3300026324Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)EnvironmentalOpen in IMG/M
3300026328Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)EnvironmentalOpen in IMG/M
3300026329Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)EnvironmentalOpen in IMG/M
3300026335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)EnvironmentalOpen in IMG/M
3300026342Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)EnvironmentalOpen in IMG/M
3300026529Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)EnvironmentalOpen in IMG/M
3300026530Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)EnvironmentalOpen in IMG/M
3300026536Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)EnvironmentalOpen in IMG/M
3300026537Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)EnvironmentalOpen in IMG/M
3300026538Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)EnvironmentalOpen in IMG/M
3300026542Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)EnvironmentalOpen in IMG/M
3300026547Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)EnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300027748Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)EnvironmentalOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300031538Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1EnvironmentalOpen in IMG/M
3300031576Biofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031947Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000HEnvironmentalOpen in IMG/M
3300034781Biocrust microbial communities from Mojave Desert, California, United States - 31SMCEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25390J43892_1013722013300002911Grasslands SoilCIVQHVSSREKLDVVAASKVVDNLDYYLKHPRPSMLRDYFNPKLHKVMRVHRQLRQITVKFEVDQEYVPAL*
JGI25386J43895_1003509733300002912Grasslands SoilLKHTRPPMLKDYFNPQLRMVLPVHRRLRQVTVRIEVEEDFVPAL*
JGI25389J43894_105438623300002916Grasslands SoilDLYLKHPRPPMLTDYFNPQLRMVMPVHRRLRQITVRFEVEEDFVPAL*
Ga0066672_1004500333300005167SoilVASTAVNAQPDLFVRHPRPPMLKDYFDPKLRKIIPVIRRLRQVTVKFQVDEAFVPAF*
Ga0066683_1031171813300005172SoilPRPSMLRDYFNPKLHKVMPVHRRLRQVTVKFGVEENFVPSF*
Ga0066683_1040237813300005172SoilFYLQHPRPSMLKDYFNPKLHLVMPVHRRLHQVTVRFEVEENYLPAM*
Ga0066679_1066940513300005176SoilPRPMMLKDYFNPKLHKVVPVHRRLRQVIVQFEAEESYAPAL*
Ga0066685_1088595233300005180SoilRPPMLKDYFNPELHMVFPAYRRLRHVMVRFQVEEYSEPTF*
Ga0066676_1061119213300005186SoilEVEAVAATDVRKNPDVYLKSPRPSMLKDYFDPMLHLVMPVYRRLRQVTVRFEVAENAVPAL*
Ga0065705_1087530113300005294Switchgrass RhizosphereDVVAASQVEDNPDYFLKHPRPSMLIDYFNPRLRKVMPVHRQLRQVTVKFEVDEAYVPAF*
Ga0070689_10092279913300005340Switchgrass RhizosphereFLTDPRPPLLKDYLDPRLHMVMSVQRRLRQVTVRFAIEEEYIPAL*
Ga0070688_10020400913300005365Switchgrass RhizosphereIVQHVSSREKLDVVAASAITDRPEYYLNHPRPSMLKDYFDPRLHKVMPVHRRMRQVTVKFEVDDGYLPAF*
Ga0070705_10019297513300005440Corn, Switchgrass And Miscanthus RhizospherePSMLKDYFDSRVHTVLRAHRRLRQVTVRFEVDESYVPAL*
Ga0070708_10159671513300005445Corn, Switchgrass And Miscanthus RhizosphereAVRHDPDSFLKHPRPSMLKDYFNPKLRKVLSVHRRLKQIMVKFQVEEAYVPGV*
Ga0066686_1022915713300005446SoilEVCSNPDLYLQRPRPMMLRDYFHPKLHKVMPVHRRLRQVTVRFEVEEQDVPMP*
Ga0066686_1083205713300005446SoilEAPDFYLKHPRPSMLKDYFNPKLRKVMPVRRRLHQVTVQFEVDDFSVPAV*
Ga0066681_1001177613300005451SoilAATEVRKNPDAYLKHPRPSMLRDYFDPALHLVMPVYRRLRQVTVRFEIEETAVPAL*
Ga0066681_1021284813300005451SoilARPPMLKDYFHPQLRMVLPVHRRLRQVTVRIEVEEDFVPAL*
Ga0066681_1090262813300005451SoilDIFLKAPRPSMLRDYFDPALHLTMPVYRRLRQVIVRFEIEENAVPAL*
Ga0070706_10034582813300005467Corn, Switchgrass And Miscanthus RhizosphereIIQHASSRDEVDAVAATEVRKNPDLYLKHPRPSMLKDYFDPALHLVMPVFRRLRQVTVRFEIDETAVPAL*
Ga0070697_10094759223300005536Corn, Switchgrass And Miscanthus RhizosphereACSDIREAPDFYLKHPRPSMLKDYFNPKLRTVMPVRRRLHQVTVQFEVDDFSVPAV*
Ga0066695_1019001413300005553SoilDAVAATEVRKNPDIFLKAPRPSMLRDYFDPALHLTMPVYRRLRQVIVRFEIEENAVPAL*
Ga0066661_1041198413300005554SoilNLDYYLKHPRPSMLRDYFNPKLHRVMPVHRQLRQITIKFEVDQEYVPVL*
Ga0066707_1035014113300005556SoilQYLRHPRPSLLKDYFNPKLRKIVPIHRRLRQVTVKFEVNETYVPAM*
Ga0066698_1071126923300005558SoilVVATSAVRRDPDLFLKHPRPSLLKDYFDRRLHKVMAVRRRLRQVTVRFEVKEISVPAV*
Ga0066700_1014605033300005559SoilLRDYFNPKLHKVMPVHRQLRQITVKFEVEQEYVPAL*
Ga0066693_1016864023300005566SoilRLDADFFLKHPRPSMLKDYFNPKLRKVMPVHRRLHQVTVRFQVDESYLPAV*
Ga0066703_1014900133300005568SoilDHPDLYLRSPRPSMLKDYFNPKLRKIVALKRRVRQVTVKFETDEKYVPSL*
Ga0066703_1085183223300005568SoilEHFLKGPRPATVKDYFDPRLHKVMQVQRRLRQVTVRFEVDEHYVPAL*
Ga0066694_1029949323300005574SoilASKVVDNLDYYLKHPRPSMLKDYFNPKLHKVMRVHRQLRQITVKFEVDQEYVPAL*
Ga0066694_1059678513300005574SoilEIRDNPDLHLKHPRPMMLKDYFHPKLHRVMPVHRRLHQVTVRFEVEEQYVPLP*
Ga0066708_1022870623300005576SoilQYLRHPRPSMLKDYFNPKLHKVLPVHRRLRQVTVKFEVNEVYVPAL*
Ga0066708_1100997623300005576SoilDLEVVASSSVRRDPDLYLKHVRPPMLRDYFNPQLRMVMPVHRRLRQVTVRFEVEEEFIPAL*
Ga0066691_1012246113300005586SoilREKLDVVAASKVVDNLDYYLKHPRPSMLKDYFNPKLHKVMPVHRQLRQITVKFEVDQEYVPAL*
Ga0066654_1013242933300005587SoilLYLKHVRPPMLKDYFDPQLRMVLPVHRRLRQITVRFEVEEDFVPAL*
Ga0066706_1058051723300005598SoilIADKPDNYLKNPRPSMLRDYFNPKLRKIMPVHRQLRQIIVKFEVEDAYVPAF*
Ga0066903_10629123413300005764Tropical Forest SoilATEVMERPDYYLKHPRPSMFKDYFNPKLYKVLRVRRQLKQITVKFEVDDVYIPEL*
Ga0066651_1008656613300006031SoilEIRDNPDLHLKHPRPMMLKDYFHPKLRKIMPVHRRLRQVTVRFEVEEQYVPLP*
Ga0066651_1053864023300006031SoilVVASSEVCSNPDLYLQRPRPMMLRDYFHPKLHKVMPVHRRLRQVTVRFEVEEQDVPMP*
Ga0066651_1069517323300006031SoilPRPSMLKDYFNPKLHKVVPVHRQLKQITIKFQIDEAYVPAL*
Ga0066696_1029716013300006032SoilSKVVDNLDYYLKHPRPSMLRDYFNPKLHRVMPVHRQLRQITVKFEVDQEYVPAL*
Ga0066656_1038693523300006034SoilNSDLYLKHARPPMLKDYFHPQLRMVLPVHRRLRQVTVRIEVEEDFVPAL*
Ga0066652_10081856313300006046SoilEVVDDSEYYLKHPRPSMLTDYFNPKLHKVMPVHRRLRQVTVKFEIEEHFVPAF*
Ga0066652_10134993823300006046SoilTSAVRRDPDLFLKHPRPSMLKDYFDGRLHKVMAVRRRLRQVTVRFEVKEISVPAV*
Ga0075417_1030872723300006049Populus RhizosphereSEVRDKPDLYLRHPRPPMLRDYFNPRLRKVMLVHRQLRQITVKFDVEESFAPAM*
Ga0066653_1036136413300006791SoilFYLKHPRPSMLKDYFNPKLHTVMPVRRRLHQVTVRFEVDEANVPAF*
Ga0066653_1074398313300006791SoilHPDLYLRNPRPSMLKDYFDPKLRKIIPIHRRVRQVTVKFATDDAYVPAV*
Ga0066658_1027707213300006794SoilSKVVDNLDYYLKHPRPSMLKDYFNPKLHKVMRVHRQLRQITVKFEVDQEYVPAL*
Ga0075431_10063803533300006847Populus RhizosphereELEVVVSSEVRDKPDLYLRHPRPPMLRDYFNPRLRKVMPVHRQLRQITVKFEVEESFAPAM*
Ga0075431_10092668613300006847Populus RhizosphereCASRDEVDAVAASEVRKNPDVYLKHPRPSMLKDYFDPDLHLVMPVYRRLRQVTVRFEIEEHAVPAL*
Ga0075431_10101656023300006847Populus RhizospherePMLRDYFNPRLRKVMLVHRRMRQITVKFEVEESFAPAM*
Ga0075425_10125108723300006854Populus RhizosphereRPPMLKDYFNPRLRLVLAVHRCLRQVTVKFEVEEHYVPAI*
Ga0075424_10189216613300006904Populus RhizospherePDLYLRSPRPSMLKDYFDPKLRKIIPIHRRLRQVTVKFETDEAYVPAF*
Ga0079218_1330009613300007004Agricultural SoilPMLKDYFDPKLHLVMPVYRRLRQITVGFEVEENSVPGL*
Ga0099795_1035997923300007788Vadose Zone SoilLKDYFNPKLYKVFPVRRQLKQVMVKFEVDDAYVPVL*
Ga0105679_1056411013300007790SoilMLKDYFNPQLRKVMAVHRRVRQITVKFDIQEEYIPAV*
Ga0066710_10032694733300009012Grasslands SoilASTEVVEDAEYYLKHPRPSMLRDYFNPKLHKVMPVHRRLRQVTVKFEVEENFVPSF
Ga0066710_10095837513300009012Grasslands SoilMLKDYFDPALHTVMRVHRRLRQISVRLEIEEVYVPAF
Ga0066710_10120366923300009012Grasslands SoilLDVTAASKVVEKPDYYLKHPRPSMLRDYFNPKLRKVMPVHRQLKQIIVKFEVEDAYVPAF
Ga0075418_1185874523300009100Populus RhizosphereSEVRDKPDLYLRHPRPPMLRDYFNPRLRKVMLVHRRMRQITVKFEVEESFAPAM*
Ga0066709_10001424873300009137Grasslands SoilLYLKHPRPMMLKDYFNPKLHKALPVHRRLRQVVVQFAAEESYAPGL*
Ga0066709_10008926443300009137Grasslands SoilVAAPAVRSDPDLYLKHPRPMMLKDYFNPKLHKVMRVHRRVRQVSVRFEAEENYAPAL*
Ga0066709_10136905213300009137Grasslands SoilPSMLKDYFNPKLRKVMAAHRRMHQVTVRFEVDEAAVPAL*
Ga0066709_10202263313300009137Grasslands SoilHPRPSLLKDYFNPKLRKIVPIHRRLRQVTVKFEVNETYVPAM*
Ga0114129_1034053113300009147Populus RhizosphereAEELEVVVSSEVRDKPDLYLRHPRPPMLRDYFNPRLRKVMLVHRQLRQITVKFDVEESFAPAM*
Ga0114129_1116424923300009147Populus RhizosphereAEELEVVVSSEVRDKPDLYLRHPRPPMLRDYFNPRLRKVMPVHRQLRQITVKFEVEESFAPAM*
Ga0075423_1006364073300009162Populus RhizosphereDYFDPALHLVMPVFRRLRQVTVRFEIDETAVPAL*
Ga0126380_1130999213300010043Tropical Forest SoilDYFNPRLRKVMPVQRQLRQITVKFEVEESFAPAM*
Ga0126382_1017589713300010047Tropical Forest SoilHPRPPMLRDYFNPRLRKVMLVHRRMRQITVKFEVEESFAPVM*
Ga0126382_1112561933300010047Tropical Forest SoilVSSEVRDNPDLYLKHPRPPMLRDYFNPRLRKVMPVHRRMRQITVKFEVEESFAPVM*
Ga0134086_1010906413300010323Grasslands SoilELDVVAASDIRNNPDLYLKYPRPMMLRDYFLPKLHKVMPVHRRLRQVTVRFEVEEQYVPMP*
Ga0134064_1030440823300010325Grasslands SoilDPDFYLKHPRPSMLKDYLNPQLYKVMPARRRLRQVTVRFTVEEHSVPAL*
Ga0134064_1037782823300010325Grasslands SoilRPSMLKDYFNPKLHKVMRVHRQLRQITVKFEVDQEYVPAL*
Ga0134065_1013229023300010326Grasslands SoilLYLKHARPPMLKDYFHPQLRMVLPVHRRLRQVTVRIEVEEDFVPAL*
Ga0134111_1010692013300010329Grasslands SoilRDYFNPKLHKVMRVHRQLRQITVKFEVDQEYVPAL*
Ga0134111_1011454423300010329Grasslands SoilIRNNPDLYLKHPRPMMLRDYFLPKLHKVMPVHRRLRQVTVRFEVEEQYVPMP*
Ga0134080_1046241813300010333Grasslands SoilPRPSLLKDYFNPKLRKIVPIHRRLRQVTVKFEVNETYVPAM*
Ga0134063_1050813813300010335Grasslands SoilSAEIRDNPDLQLKHPRLMVLKDYFDPKLRKSMPVQRLLGLVTVRFEIEEQYVPLP*
Ga0134062_1014064423300010337Grasslands SoilEVRKNPDIFLKAPRPSMLRDYFDPALHLTMPVYRRLRQVIVRFEIEENAVPAL*
Ga0126377_1001487543300010362Tropical Forest SoilMLRDYFNPRLRKVMPVHRQLRQITVKFEVEESFAPAM*
Ga0134066_1004903933300010364Grasslands SoilRPSMLKDYFNPKLRKVMPVRRRLHQIMVEFDVDEFSVPAV*
Ga0134125_1030736413300010371Terrestrial SoilHPDLYLRSPRPSMLKDYFDPKLRKIIPIHRRLRQVTVKFETDEAYVPAF*
Ga0134124_1110599733300010397Terrestrial SoilMLRDYFNPRLRKVMHVHQQLRQITVKFEVEESFAPVM*
Ga0134127_1309865023300010399Terrestrial SoilSSRDEVDAVAATEVRKNPDFYLKDPRPSMLGDYFDPALHLVMPVYRRLRQVTVRFEIEENAIPAL*
Ga0134121_1141562823300010401Terrestrial SoilDPRPPLLKDYLDSRLHMVMSVQRRLRQVTVRFAIEEEYIPAL*
Ga0137391_1121635113300011270Vadose Zone SoilCTDIREAPDFYLKHPRPSMLKDYFNPKLRKVMQVRRRLHQVIVQFEVDDFSVPAV*
Ga0136623_1043580113300012045Polar Desert SandTRDELDVVAASAIRQDPDYYLKHPRPSMLKDYFNPQLRKVMPVHRRVRQITVKFDIQEEYIPAV*
Ga0137364_1026564313300012198Vadose Zone SoilRPSMLKDYFDPALHLVMPVYRRLRQVTVRFEIEENAMPAL*
Ga0137364_1043994033300012198Vadose Zone SoilMGSTAVRRDPDLYLKHPRPPMLTDYFNPQLRMVMPVHRRLRQITVRFEVEEDFV
Ga0137364_1136324313300012198Vadose Zone SoilPRPSMLKDYFNPKLYKVMPVRRRLRQITVRFKVEENSVPAL*
Ga0137377_1064236713300012211Vadose Zone SoilNPDLYLKHARPPMLKDYFHPQLRMVLPVHRRLRQVTVRIEVEEDFVPAL*
Ga0137370_1072406313300012285Vadose Zone SoilMLKDYFNPRLRKVMPVRRRIHQVTVKFEVDEIAVPAV*
Ga0137371_1022291713300012356Vadose Zone SoilPRPMMLKDYFNPKLRKAVPVHRRLRQVIVQFEAEENYAPAL*
Ga0137371_1085484123300012356Vadose Zone SoilDVVASERVRERPDQYLRHPRPALLKDYFNPKLRKVVPVHRRLRQVTVKFEVDEVYVPTI*
Ga0137385_1063855423300012359Vadose Zone SoilPSMLKDYFNPKLRKIMPVRRRLHQVTVQFEVDDFSVPAV*
Ga0137375_1103844913300012360Vadose Zone SoilKHPRPQMLKDYFNPKLYKVLPVRRRLRQITVRFEVDEYSVPVL*
Ga0137358_1047670013300012582Vadose Zone SoilEPRPMMLKDYFNPKLRKIVPVHRRTRQVIVKFEVDDGFVPAL*
Ga0136614_1111039513300012684Polar Desert SandSMLKDYFNPRLRKVLQVHRRLRQIRVKYEIEETYLPMV*
Ga0137395_1127533213300012917Vadose Zone SoilNPRPSMLRDYFNPLLYKIMPVHRRLRQITLRFEVEETFVPAF*
Ga0137396_1105552923300012918Vadose Zone SoilLKHPRPSMLRDYFNPKLHKVMQVHRQLRQITVKFEVDTAEVPAL*
Ga0137394_1010696533300012922Vadose Zone SoilVEDSEYYLKHPRPSMLGDYFNPKLHKVMPVNRRIRQVTVKFEVEENFVPSL*
Ga0137359_1171495423300012923Vadose Zone SoilNARPSMLKDYFNPKLRKVMPVHRRLQQITVKFEVEENSVPAF*
Ga0137419_1132398023300012925Vadose Zone SoilASSRDEVDAVAATEVRKNPDLYLKHPRPSMLKDYFDPALHLVMPVFRRLRQVTVRFEIDETAVPAL*
Ga0137416_1171012423300012927Vadose Zone SoilPRPSMLRDYFNPKLHKVFPVRRQMKQIRIKFEVDDASVPVL*
Ga0137404_1130945513300012929Vadose Zone SoilRPSMLKDYFNPKLHKVVSVHRQLKQITIKFQIDETYVPAL*
Ga0137407_1227359513300012930Vadose Zone SoilQHCASRDEVDAVAASEVRKNPDAYLKHPRPSMLRDYFDPALHLTMPVYRRLRQVIVRFEIEENAVPAL*
Ga0137410_1043705223300012944Vadose Zone SoilSDIVRHQNFFLKNPRPSMLKDYFNPLLHKIMPVHRRLRQVTLRFEVEETFVPAF*
Ga0137410_1114202623300012944Vadose Zone SoilCIIQHASSRDKLDVLAASEVMDRPDYYLKHPRPSMLKDYFNPKLYKVFPVRRQLKQVMVKFEVDDAYVPVL*
Ga0134087_1019828123300012977Grasslands SoilLYLKHPRPPMLRDYLNPKLHKVMPVHRRLEQVTVRFEVEENYVPAL*
Ga0164308_1208423623300012985SoilRRNPDLYLKHARPSMLKDYFNPKLRKVMPVHRRLLQLTVKFEVEEANIPTL*
Ga0163162_1340779123300013306Switchgrass RhizosphereMLKDYFNPKLRKIVSVHRRLRQIMVKFQVEEAYVPGI*
Ga0163163_1257249323300014325Switchgrass RhizosphereLVAPSQVQARPDRYLQRPRPMMLKDYFDPRLHKVMRFHRRLQQVTVRFEVEENYLPAL*
Ga0137420_136131723300015054Vadose Zone SoilMLRDYFDPALHLTMPVYRRLRQVIVRFEIEENAVPAL*
Ga0137409_1059839823300015245Vadose Zone SoilSVRRNPDLYLKHTRPPMLKDYFNPQLRMVMPVHRRLRQVTVRFEVEEDFVPAL*
Ga0137403_1092958713300015264Vadose Zone SoilLKHPRPSMLPDYFNSKLYKIMPVHRRIRQVTVKFEIEEGFVPSL*
Ga0137403_1107454513300015264Vadose Zone SoilRPSMLKDYFNPKLHKVMRVHRQMRQVTVKIEVEDGYVPAF*
Ga0182037_1054760813300016404SoilPDSFLKNPRPSMLKDYFNPRLRKIVPVHRRLKQIIVKIHVEEAYVPGV
Ga0134069_108213723300017654Grasslands SoilDVVASSEVCSNPDLYLQRPRPMMLRDYFDPKLHKVMPVHRRLRQVTVRFEVEEQDVPMP
Ga0134069_108236723300017654Grasslands SoilVRKNPDAYLKHPRPSMLRDYFDPALHLVMPVYRRLRQVTVRFEIEETAVPAL
Ga0134074_141122523300017657Grasslands SoilTEVRKNPDIYLKHPRPSMLKDYFDPALHLVMPVYRRLRQVTVRFEIEENAVPAL
Ga0184618_1011488743300018071Groundwater SedimentKHPRPSMLKDYFDPALHLVMPVYRRLRQVTVRFEIEEHAVPAV
Ga0184627_1030887723300018079Groundwater SedimentSRDALAVVAPSHVADNSDYYLKHPRPSMLKDYFDPRLHKVMTVHRQLRQITVKFEVDEAHVPAL
Ga0066655_1133806923300018431Grasslands SoilSTEVVEDAEYYLKHPRPSMLRDYFNPKLHKVMPVHRRLRQVTVKFEVEENFVPSF
Ga0066667_1191998523300018433Grasslands SoilHPRPMMLKDYFNPKLHKALPVHRRLRQVVVQFAAEESYAPGL
Ga0066669_1037768413300018482Grasslands SoilRVRSDPDLYLKHPRPMMLKDYFNPKLHKALPVHRRLRQVVVQFAAEESYAPGL
Ga0066669_1041223133300018482Grasslands SoilSGDLREHPDLYLRSPRPSMLKDYFNPKLRKIVALKRRVRQVTVKFETDEKYVPSL
Ga0066669_1198177713300018482Grasslands SoilEIRDNPDLHLKHPRPMMLKDYFHPKLRKIMPVHRRLRQVTVRFEVEEQYVPLP
Ga0222623_1000170113300022694Groundwater SedimentMLRDYFDPALHLVMPVYRRLRQVIVRFEIEENAVPAL
Ga0207684_1100871823300025910Corn, Switchgrass And Miscanthus RhizosphereDLYLSHARPPMLKDYFDPRLYRVTTVHRRFRQITVRFEVEENYVPAL
Ga0207707_1109403123300025912Corn RhizosphereDYYLKHPRPSMLMDYFNPKLHKVMPVRRQLRQVTIKFVVEEINVPML
Ga0207670_1082616613300025936Switchgrass RhizosphereFLTDPRPPLLKDYLDPRLHMVMSVQRRLRQVTVRFAIEEEYIPAL
Ga0207712_1078133433300025961Switchgrass RhizosphereMLRDYFNPRLRKVMHVHQQLRQITVKFEVEESFAPVM
Ga0209350_112921723300026277Grasslands SoilPRPSMLRDYFNPKLRKIMPVHRQLRQVTIKFEVEDAYVPAF
Ga0209688_104999823300026305SoilQEPDFFLKHPRPSMLKDYFNPKLRKVMPVHRRLHQVTVRFQVDESYLPAV
Ga0209055_105415113300026309SoilARPPMLPDYFDARLHMVMPVHRRVRQVTLRFEIEEEYVPAV
Ga0209239_106096033300026310Grasslands SoilKLDVVAASKVVDNLDYYLKHPRPSMLRDYFNPKLHKVMRVHRQLRQITVKFEVDQEYVPA
Ga0209239_110281513300026310Grasslands SoilSSREKLDVVAASKVVDNLDYYLKHPRPSMLKDYFNPKLHKVMPVHRQLRQITVKFEVDQEYVPAL
Ga0209154_115259923300026317SoilRNPDLYLKHARPPMLKDYFNPQLRMVMPVHRRLRQVTVRIEVEEDFVPAL
Ga0209470_132222423300026324SoilSDLYLKHARPPMLKDYFHPQLRMVLPVHRRLRQVTVRIEVEEDFVPAL
Ga0209802_129601313300026328SoilFLKHPRPSMLKDYFDGRLHKVMAVRRRLRQVTVRFEVKEISVPAV
Ga0209375_109623113300026329SoilNSDLYLKHARPPMLKDYFHPQLRMVLPVHRRLRQVTVRIEVEEDFVPAL
Ga0209804_101206913300026335SoilNVVASTAVNAQPDLFVRHPRPPMLKDYFDPKLRKIIPVIRRLRQVTVKFQVDEAFVPAF
Ga0209804_106087933300026335SoilHARPPMLKDYFNPQLRMVMPVHRRLRQVTVRIEVEEDFVPAL
Ga0209057_119377823300026342SoilHISSLAELDVVASTEVVEDAEYYLKHPRPSMLRDYFNPKLHKVMPVHRRLRQVTVKFEVEENFVPSF
Ga0209806_126638813300026529SoilSEVVDDSEYYLKHPRPSMLTDYFNPKLHKVMPVHRRLRQVTVKFEIEENFVPAF
Ga0209807_106921433300026530SoilNPDLYLKHARPPMLKDYFNPQLRMVMPVHRRLRQVTVRIEVEEDFVPAL
Ga0209058_106908423300026536SoilCSNPDLYLQRPRPMMLRDYFHPKLHKVMPVHRRLRQVTVRFEVEEQDVPMP
Ga0209157_111717523300026537SoilSDPDLYLKHPRPMMLKDYFNPKLHKVMRVHRRVRQVSIRFEAEENYAPAL
Ga0209056_1009831013300026538SoilDNPDLHLKHPRPMMLKDYFHPKLRKIMPVHRRLRQVTVRFEVEEQYVPVP
Ga0209805_114224713300026542SoilRRNPDLYLKHVRPPMLKDYFDPQLRMVLPVHRRLRQITVRFEVEEDFVPAL
Ga0209156_1041369513300026547SoilHRNPDLYLSHPRPSVLRDYFDPKLRKIVAVHRRLRQVAVTFEAEQTDVPAT
Ga0179587_1066166223300026557Vadose Zone SoilPRPSMLKDYFKPKLHKVMPVRRRLRQITIKFEVGDSDVPAL
Ga0209689_129351313300027748SoilRPSMLKDYFDGRLHKVMAVRRRLRQVTVRFEVKEISVPAV
Ga0209382_1029542713300027909Populus RhizosphereVVSSEVRDKPDLYLRHPRPPMLRDYFNPRLRKVMLVHRQLRQITVKFEVEESFAPAM
Ga0310888_1033602913300031538SoilMLIDYFNPRLRKVMPVHRQLRQVTVKFEVDEAYVPAF
Ga0247727_1052874523300031576BiofilmEELEVVASSEVRANPDLYLKHPRPPMLRDYFNPRLRRVMPVHRVLRQITVKFDVEEHSAPAF
Ga0307469_1062260113300031720Hardwood Forest SoilPRPPLLRDYFDPALHKVMALERRTHQVTVSFETDETDVPAL
Ga0306921_1268218113300031912SoilLEVAAASEVVDNPDYYLKHPRPSMLKDYFNPKLHKVMPVHRRLRQVRIKFEVEESNVPEF
Ga0310909_1112410223300031947SoilKDYFNPKLHKVMPVHRQLRQVRIKFEVEESNVPAF
Ga0334935_033555_2_1693300034781BiocrustAAAIRRDPDQFLKHPRPSMLKDYFNPELRKVMPSHRRLRQITVKFEIEDAYVPAV
Ga0334935_227221_341_5203300034781BiocrustDVVAAAAIRRDPDQFLKHPRPSMLKDYFNPELRKVMPSHRRLRQITVKFEIEDAYVPAV

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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