Metagenome / Metatranscriptome Family F040612

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F040612
Family Type	Metagenome / Metatranscriptome
Number of Sequences	161
Average Sequence Length	39 residues
Representative Sequence	MRTLGYITAVTMAAAAAALGLLAVMSLPDIRQYLKIRKM
Number of Associated Samples	105
Number of Associated Scaffolds	161

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	91.19 %
% of genes near scaffold ends (potentially truncated)	12.42 %
% of genes from short scaffolds (< 2000 bps)	82.61 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (55.901 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (18.012 % of family members)
Environment Ontology (ENVO)	Unclassified (20.497 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (65.217 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 55.22% β-sheet: 0.00% Coil/Unstructured: 44.78%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 161 Family Scaffolds
PF05532	CsbD	10.56
PF01740	STAS	9.94
PF12697	Abhydrolase_6	4.35
PF01145	Band_7	3.11
PF12802	MarR_2	2.48
PF02909	TetR_C_1	1.86
PF13466	STAS_2	1.86
PF01183	Glyco_hydro_25	1.86
PF03631	Virul_fac_BrkB	1.86
PF00171	Aldedh	1.86
PF00571	CBS	1.24
PF00144	Beta-lactamase	1.24
PF03861	ANTAR	1.24
PF02687	FtsX	0.62
PF13378	MR_MLE_C	0.62
PF01458	SUFBD	0.62
PF03734	YkuD	0.62
PF00196	GerE	0.62
PF08281	Sigma70_r4_2	0.62
PF00440	TetR_N	0.62
PF14659	Phage_int_SAM_3	0.62
PF13305	TetR_C_33	0.62
PF00011	HSP20	0.62
PF00665	rve	0.62
PF03992	ABM	0.62
PF01027	Bax1-I	0.62
PF01904	DUF72	0.62
PF02452	PemK_toxin	0.62

COG ID	Name	Functional Category	% Frequency in 161 Family Scaffolds
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	10.56
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	1.86
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	1.86
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	1.86
COG1309	DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA	Transcription [K]	1.86
COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	Cell wall/membrane/envelope biogenesis [M]	1.86
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	1.86
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	1.24
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	1.24
COG2367	Beta-lactamase class A	Defense mechanisms [V]	1.24
COG3707	Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains	Transcription [K]	1.24
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.62
COG0719	Fe-S cluster assembly scaffold protein SufB	Posttranslational modification, protein turnover, chaperones [O]	0.62
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.62
COG1801	Sugar isomerase-related protein YecE, UPF0759/DUF72 family	General function prediction only [R]	0.62
COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	Defense mechanisms [V]	0.62
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.62
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.62
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.62
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.62
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.62

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	55.90 %
Unclassified	root	N/A	44.10 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	55.90 %
Unclassified	root	N/A	44.10 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	55.90 %
Unclassified	root	N/A	44.10 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	49.69 %
Unclassified	root	N/A	44.10 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	44.10 %
Unclassified	root	N/A	44.10 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.24 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.10 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	27.33 %
Thermomicrobia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.10 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	3.11 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2.48 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.48 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.86 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1.24 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.62 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.62 %
Thermomicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.10 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	3.11 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.48 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	1.24 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1.24 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	1.24 %
Actinopolymorphaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae	0.62 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → environmental samples	0.62 %
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	0.62 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.62 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.62 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.10 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2.48 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.48 %
Nonomuraea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea	1.24 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	1.24 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	1.24 %
uncultured Thermomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → environmental samples → uncultured Thermomicrobiales bacterium	0.62 %
Phycicoccus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus	0.62 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.62 %
Actinopolymorpha	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha	0.62 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.62 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.10 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.48 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1.24 %
Streptomyces griseolus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces griseolus	1.24 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	1.24 %
unclassified Phycicoccus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus	0.62 %
Actinopolymorpha pittospori	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha → Actinopolymorpha pittospori	0.62 %
Nonomuraea diastatica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea diastatica	0.62 %
Nonomuraea rubra	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea rubra	0.62 %
uncultured Thermomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → environmental samples → uncultured Thermomicrobiales bacterium	0.62 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.62 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.62 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.10 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.48 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1.24 %
Streptomyces griseolus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces griseolus	1.24 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	1.24 %
Phycicoccus sp. HDW14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp. HDW14	0.62 %
Actinopolymorpha pittospori	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha → Actinopolymorpha pittospori	0.62 %
Nonomuraea diastatica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea diastatica	0.62 %
Nonomuraea rubra	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea rubra	0.62 %
uncultured Thermomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → environmental samples → uncultured Thermomicrobiales bacterium	0.62 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.62 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.62 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.62 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10006223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	10251	Open in IMG/M
3300002677\|Ga0005475J37263_109177	Not Available	506	Open in IMG/M
3300003505\|JGIcombinedJ51221_10333582	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	617	Open in IMG/M
3300004092\|Ga0062389_101778119	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	796	Open in IMG/M
3300004099\|Ga0058900_1335714	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	570	Open in IMG/M
3300004115\|Ga0058890_170437	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300004152\|Ga0062386_100037771	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3610	Open in IMG/M
3300005434\|Ga0070709_10040266	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	2872	Open in IMG/M
3300005434\|Ga0070709_10230755	Not Available	1324	Open in IMG/M
3300005434\|Ga0070709_10282668	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1206	Open in IMG/M
3300005436\|Ga0070713_100706525	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	963	Open in IMG/M
3300005436\|Ga0070713_101005531	Not Available	804	Open in IMG/M
3300005437\|Ga0070710_10445688	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	876	Open in IMG/M
3300005439\|Ga0070711_100165665	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1680	Open in IMG/M
3300005439\|Ga0070711_100484351	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1017	Open in IMG/M
3300005439\|Ga0070711_101659837	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	559	Open in IMG/M
3300005467\|Ga0070706_100774745	All Organisms → cellular organisms → Bacteria	888	Open in IMG/M
3300005471\|Ga0070698_100184216	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	2026	Open in IMG/M
3300005529\|Ga0070741_10119815	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2723	Open in IMG/M
3300005529\|Ga0070741_10140443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2449	Open in IMG/M
3300005534\|Ga0070735_10673479	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	612	Open in IMG/M
3300005538\|Ga0070731_10328464	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1016	Open in IMG/M
3300005541\|Ga0070733_11100065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces griseolus	533	Open in IMG/M
3300005547\|Ga0070693_101227343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	577	Open in IMG/M
3300005561\|Ga0066699_10655435	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	752	Open in IMG/M
3300005591\|Ga0070761_10092525	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1735	Open in IMG/M
3300005591\|Ga0070761_10279439	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1002	Open in IMG/M
3300005602\|Ga0070762_10028098	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2987	Open in IMG/M
3300005602\|Ga0070762_10072073	All Organisms → cellular organisms → Bacteria	1947	Open in IMG/M
3300005610\|Ga0070763_10006418	All Organisms → cellular organisms → Bacteria	4620	Open in IMG/M
3300005610\|Ga0070763_10018138	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	3059	Open in IMG/M
3300005610\|Ga0070763_10547776	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	666	Open in IMG/M
3300006032\|Ga0066696_10220876	Not Available	1216	Open in IMG/M
3300006046\|Ga0066652_101161415	Not Available	731	Open in IMG/M
3300006574\|Ga0074056_11761312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces griseolus	531	Open in IMG/M
3300006806\|Ga0079220_11468999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	583	Open in IMG/M
3300006871\|Ga0075434_101410459	Not Available	706	Open in IMG/M
3300006893\|Ga0073928_10022931	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6317	Open in IMG/M
3300006893\|Ga0073928_10111842	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2268	Open in IMG/M
3300006893\|Ga0073928_10155923	Not Available	1836	Open in IMG/M
3300006893\|Ga0073928_10168112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	1751	Open in IMG/M
3300006893\|Ga0073928_10511506	Not Available	859	Open in IMG/M
3300006954\|Ga0079219_11406454	Not Available	624	Open in IMG/M
3300006954\|Ga0079219_11769542	Not Available	576	Open in IMG/M
3300010303\|Ga0134082_10174142	Not Available	875	Open in IMG/M
3300010371\|Ga0134125_10530842	Not Available	1302	Open in IMG/M
3300010371\|Ga0134125_10601995	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1215	Open in IMG/M
3300010373\|Ga0134128_10925312	Not Available	965	Open in IMG/M
3300010396\|Ga0134126_11225357	Not Available	833	Open in IMG/M
3300010400\|Ga0134122_12323602	Not Available	582	Open in IMG/M
3300010866\|Ga0126344_1385459	Not Available	730	Open in IMG/M
3300011107\|Ga0151490_1162743	Not Available	765	Open in IMG/M
3300011120\|Ga0150983_10422294	Not Available	1101	Open in IMG/M
3300011120\|Ga0150983_10916384	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea diastatica	509	Open in IMG/M
3300011120\|Ga0150983_11184274	Not Available	709	Open in IMG/M
3300011120\|Ga0150983_11736647	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1399	Open in IMG/M
3300011120\|Ga0150983_11922627	Not Available	532	Open in IMG/M
3300011120\|Ga0150983_12941865	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → environmental samples → uncultured Thermomicrobiales bacterium	2129	Open in IMG/M
3300011120\|Ga0150983_15560680	Not Available	591	Open in IMG/M
3300011120\|Ga0150983_15760538	Not Available	914	Open in IMG/M
3300011120\|Ga0150983_16596571	Not Available	606	Open in IMG/M
3300012211\|Ga0137377_10002339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	14071	Open in IMG/M
3300012285\|Ga0137370_10751812	Not Available	605	Open in IMG/M
3300012957\|Ga0164303_10843412	Not Available	635	Open in IMG/M
3300012984\|Ga0164309_10596917	Not Available	861	Open in IMG/M
3300012987\|Ga0164307_11464369	Not Available	577	Open in IMG/M
3300012988\|Ga0164306_11814085	Not Available	530	Open in IMG/M
3300012989\|Ga0164305_11078718	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp. HDW14	688	Open in IMG/M
3300015374\|Ga0132255_105643588	Not Available	529	Open in IMG/M
3300018431\|Ga0066655_10730313	Not Available	671	Open in IMG/M
3300018468\|Ga0066662_10790402	Not Available	919	Open in IMG/M
3300019159\|Ga0184574_106387	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	888	Open in IMG/M
3300019182\|Ga0184598_119875	Not Available	732	Open in IMG/M
3300019192\|Ga0184603_131407	Not Available	502	Open in IMG/M
3300019192\|Ga0184603_142475	All Organisms → cellular organisms → Bacteria → Terrabacteria group	613	Open in IMG/M
3300020581\|Ga0210399_10110923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2249	Open in IMG/M
3300020581\|Ga0210399_10291277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1363	Open in IMG/M
3300020582\|Ga0210395_10003493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	12035	Open in IMG/M
3300020582\|Ga0210395_10082865	All Organisms → cellular organisms → Bacteria	2364	Open in IMG/M
3300020582\|Ga0210395_10384102	All Organisms → cellular organisms → Bacteria	1056	Open in IMG/M
3300020582\|Ga0210395_10515872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea rubra	899	Open in IMG/M
3300021171\|Ga0210405_10365501	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1138	Open in IMG/M
3300021171\|Ga0210405_10602202	Not Available	856	Open in IMG/M
3300021171\|Ga0210405_10781718	Not Available	733	Open in IMG/M
3300021181\|Ga0210388_10170600	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1897	Open in IMG/M
3300021181\|Ga0210388_10469776	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1105	Open in IMG/M
3300021401\|Ga0210393_10236454	All Organisms → cellular organisms → Bacteria	1481	Open in IMG/M
3300021401\|Ga0210393_10242615	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	1461	Open in IMG/M
3300021401\|Ga0210393_11441386	Not Available	549	Open in IMG/M
3300021402\|Ga0210385_10070329	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2383	Open in IMG/M
3300021402\|Ga0210385_10132300	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1770	Open in IMG/M
3300021402\|Ga0210385_10244729	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1316	Open in IMG/M
3300021402\|Ga0210385_10247330	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1309	Open in IMG/M
3300021403\|Ga0210397_10166295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1554	Open in IMG/M
3300021403\|Ga0210397_10326397	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1133	Open in IMG/M
3300021433\|Ga0210391_10520721	All Organisms → cellular organisms → Bacteria → Terrabacteria group	934	Open in IMG/M
3300021474\|Ga0210390_10202606	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1678	Open in IMG/M
3300021474\|Ga0210390_10512028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1010	Open in IMG/M
3300021474\|Ga0210390_10570682	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	950	Open in IMG/M
3300021474\|Ga0210390_10686295	Not Available	854	Open in IMG/M
3300021474\|Ga0210390_11064023	Not Available	658	Open in IMG/M
3300021478\|Ga0210402_10106692	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2521	Open in IMG/M
3300021559\|Ga0210409_11247633	Not Available	619	Open in IMG/M
3300022557\|Ga0212123_10052399	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3718	Open in IMG/M
3300022557\|Ga0212123_10770261	Not Available	583	Open in IMG/M
3300023019\|Ga0224560_112955	Not Available	522	Open in IMG/M
3300023541\|Ga0247544_101730	Not Available	584	Open in IMG/M
3300023660\|Ga0247550_102108	Not Available	668	Open in IMG/M
3300025898\|Ga0207692_10198728	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1178	Open in IMG/M
3300025898\|Ga0207692_11156000	Not Available	513	Open in IMG/M
3300025906\|Ga0207699_10090443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1920	Open in IMG/M
3300025910\|Ga0207684_10398790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1183	Open in IMG/M
3300025912\|Ga0207707_10848001	Not Available	758	Open in IMG/M
3300025915\|Ga0207693_11135858	Not Available	592	Open in IMG/M
3300025916\|Ga0207663_10150900	Not Available	1630	Open in IMG/M
3300025928\|Ga0207700_10447814	Not Available	1138	Open in IMG/M
3300025928\|Ga0207700_11109489	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	707	Open in IMG/M
3300025929\|Ga0207664_11938357	Not Available	512	Open in IMG/M
3300027619\|Ga0209330_1007759	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2398	Open in IMG/M
3300027648\|Ga0209420_1014716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2651	Open in IMG/M
3300027725\|Ga0209178_1432450	Not Available	504	Open in IMG/M
3300027853\|Ga0209274_10023937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2796	Open in IMG/M
3300027855\|Ga0209693_10000774	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	13166	Open in IMG/M
3300027855\|Ga0209693_10099255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1441	Open in IMG/M
3300027884\|Ga0209275_10221754	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1029	Open in IMG/M
3300027889\|Ga0209380_10324083	Not Available	905	Open in IMG/M
3300027894\|Ga0209068_10585833	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300027908\|Ga0209006_10214562	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1667	Open in IMG/M
3300027986\|Ga0209168_10451799	All Organisms → cellular organisms → Bacteria → Terrabacteria group	623	Open in IMG/M
3300028884\|Ga0307308_10610622	Not Available	523	Open in IMG/M
3300029999\|Ga0311339_10159265	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2634	Open in IMG/M
3300030760\|Ga0265762_1036918	Not Available	945	Open in IMG/M
3300030762\|Ga0265775_112759	Not Available	546	Open in IMG/M
3300030803\|Ga0074037_1469032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	513	Open in IMG/M
3300030805\|Ga0265756_103463	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	856	Open in IMG/M
3300030877\|Ga0265777_103744	Not Available	946	Open in IMG/M
3300030877\|Ga0265777_108201	Not Available	739	Open in IMG/M
3300030884\|Ga0265758_101274	Not Available	980	Open in IMG/M
3300031236\|Ga0302324_100773037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha → Actinopolymorpha pittospori	1342	Open in IMG/M
3300031236\|Ga0302324_103391682	Not Available	519	Open in IMG/M
3300031708\|Ga0310686_115348980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	861	Open in IMG/M
3300031718\|Ga0307474_10061250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2785	Open in IMG/M
3300031720\|Ga0307469_11038340	Not Available	767	Open in IMG/M
3300031808\|Ga0316037_101817	Not Available	1165	Open in IMG/M
3300031874\|Ga0316047_102334	Not Available	909	Open in IMG/M
3300032120\|Ga0316053_107060	Not Available	741	Open in IMG/M
3300032205\|Ga0307472_100817198	Not Available	853	Open in IMG/M
3300032515\|Ga0348332_10088428	All Organisms → cellular organisms → Bacteria	861	Open in IMG/M
3300032515\|Ga0348332_10126298	All Organisms → cellular organisms → Bacteria	960	Open in IMG/M
3300032515\|Ga0348332_11038220	Not Available	840	Open in IMG/M
3300032515\|Ga0348332_12098356	Not Available	603	Open in IMG/M
3300032515\|Ga0348332_14579602	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	950	Open in IMG/M
3300032739\|Ga0315741_10200071	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1323	Open in IMG/M
3300032739\|Ga0315741_12034036	Not Available	502	Open in IMG/M
3300032892\|Ga0335081_11562994	Not Available	727	Open in IMG/M
3300032896\|Ga0335075_10388624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1492	Open in IMG/M
3300032896\|Ga0335075_11466996	Not Available	570	Open in IMG/M
3300032898\|Ga0335072_10007504	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	15867	Open in IMG/M
3300033551\|Ga0247830_11697829	Not Available	506	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.76%
Host-Associated	Host-Associated	1.24%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.30%
Aquatic	Environmental → Aquatic	7.45%
Plants	Host-Associated → Plants	1.24%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.34%
Thermal Springs	Environmental → Aquatic → Thermal Springs	5.59%
Plant Litter	Environmental → Terrestrial → Plant Litter	3.11%
Peat	Environmental → Terrestrial → Peat	1.86%
Freshwater	Environmental → Aquatic → Freshwater	1.24%
Sediment	Environmental → Aquatic → Sediment	0.62%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.62%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.62%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.17%
Loam	Environmental → Terrestrial → Soil → Loam	31.68%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	5.59%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	3.11%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.48%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.86%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.24%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.62%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.84%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	21.12%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	18.01%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	13.66%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	5.59%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.11%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	3.11%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.48%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.48%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.86%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.24%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.62%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.62%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.01%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.29%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	12.42%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	10.56%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	7.45%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	5.59%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.73%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.11%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	3.11%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.48%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.86%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.86%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.24%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.24%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.24%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.24%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.24%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.62%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.62%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.62%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.62%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.62%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.62%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.62%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002677	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF124 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004099	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF236 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004115	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF216 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006574	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010866	Boreal forest soil eukaryotic communities from Alaska, USA - C1-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019159	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLE1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019182	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZE1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019192	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZA3 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300023019	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU1	Environmental	Open in IMG/M
3300023541	Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSE4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300023660	Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300027619	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030760	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030762	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZA1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030803	Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Mineral C3 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030805	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030877	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZA4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030884	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSA5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031808	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLE3 metaT (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300031874	Metatranscriptome of spruce litter microbial communities from Bohemian Forest, Czech Republic - CLE5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300032120	Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZA5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032739	Forest Soil Metatranscriptomics Site 2 LB Combined Assembly	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_100062232	3300001593	Forest Soil	MRALGYISAITMATTAAALGLLAVRSLPDIRQYLKIRKM*
Ga0005475J37263_1091772	3300002677	Forest Soil	MRALGYITAVTIAAASAALALLVVMSVPDVRRYLKIRKM*
JGIcombinedJ51221_103335821	3300003505	Forest Soil	MRTLGYITAVTMAATAAALGLLAVKSVPDLRQYLKIRKM*
Ga0062389_1017781191	3300004092	Bog Forest Soil	MRILGYITAITMAAAASALGLLAVRSAPDVRQYLKIRKM*
Ga0058900_13357142	3300004099	Forest Soil	MRTLGYITAVTMATAATALGLLAAMSVPDMRRYMKIRKM*
Ga0058890_1704372	3300004115	Forest Soil	MRTLGYITAGTMAAAAAALGLLAAMSLPDMRKYLKIRKM*
Ga0062386_1000377711	3300004152	Bog Forest Soil	MRTMGYVTTVTMAAAAAALGLVAVKSLPDARRYLTMRKM*
Ga0070709_100402662	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MRTLGYITAVTMAAAAAALGLLAVRSLPDMRQYLKIRKM*
Ga0070709_102307553	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MRTLGYITAVTMAATAAALGLLAVMSLPDIRQYRKIRKM*
Ga0070709_102826682	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MRTLGYITAVTMAAAAAALGLLAVMSLPDIRQYLKIRKM*
Ga0070713_1007065252	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MRTLGYITAVTTAAAAAALGLLAAKSVPDIRRYLKIRKM*
Ga0070713_1010055312	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MRTLGYITALTMAATAAALGLLAVMSLPDIRQYLKIRKM*
Ga0070710_104456882	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MRTLGYITAVTMAAAAVALGLLAVMSLPDIRQYLKIRKM*
Ga0070711_1001656653	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MRTLGNITAVTMAVAVAALGLLAVRSVPDVRRYLKIRKM*
Ga0070711_1004843512	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MRTLGYITAVTMAATAAALGLLVVMSLPDIRQYLKIRKM*
Ga0070711_1016598372	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MRTLGYITAVTMAVAAVALGLLAVTSLPDIRQYLKIRKM*
Ga0070706_1007747453	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MRALGYTTAVTTAAASAALALLVVMSVPDARRYLKIRKM*
Ga0070698_1001842162	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MRALGYTPAVTTAAASAALALLVVMSVPDARRYLKIRKM*
Ga0070741_101198152	3300005529	Surface Soil	MRVLGYITAVIAAATAAALGLLAVKSLPDVRQYLKIRKM*
Ga0070741_101404432	3300005529	Surface Soil	MRTLGHITAVTMAAAAAALGLLAVASLPDMRQYLKIRKM*
Ga0070735_106734792	3300005534	Surface Soil	MRTLGYITAVTMTASAAALGLLAVMSLPDIRRYLKIRRM*
Ga0070731_103284642	3300005538	Surface Soil	MRALGYLAAITMAAAAAALGVLAVKSVPDVRRYIAIRQM*
Ga0070733_111000651	3300005541	Surface Soil	MRTLGYITAVTMAAAVAALGLLAAKSAPDIRRYLKIKKM*
Ga0070693_1012273431	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MRTLGYITAVTMAAAAVALGLLAVTSLPDIRQYLKIRKM*
Ga0066699_106554353	3300005561	Soil	MRALGYITAVTIAAAGAALALLVVMSLPDVRRYLKIKKM*
Ga0070761_100925252	3300005591	Soil	MRRLGYVTTIIMAAAAAALGLLAVKSLPDARRYLTVRKM*
Ga0070761_102794393	3300005591	Soil	MRTLGYITAITMAAAAASLGLLAVMSLPDLRKYLKIRKM*
Ga0070762_100280988	3300005602	Soil	MRTLGYISAVTMAAAAATLGLLAVMSLPDMRRYLKIRKM*
Ga0070762_100720733	3300005602	Soil	MRTVGYITAVTMAVTAAAIGLLAVMSLPDMRRYMKIRKM*
Ga0070763_100064182	3300005610	Soil	MRTLGYISAITMAASAAALGLLAVMSLPDIRQYLKIRKM*
Ga0070763_100181384	3300005610	Soil	MRTPGYITAVTMAAAAAALGLLTVTSLPDIRRYLKIKKM*
Ga0070763_105477762	3300005610	Soil	MRTLGYITVVTMAAAAAAFGLLAVMSLPDLRRYLKIRKM*
Ga0066696_102208762	3300006032	Soil	MRALGYITGVTIAAASAALALLVVLSLPDVRRYIKIRKM*
Ga0066652_1011614151	3300006046	Soil	MRALGYITGITIAAASAALALLVVLSLPDVRRYIKIRKM*
Ga0074056_117613121	3300006574	Soil	MRTLGYTTAVTTAAAAAALGLLAVMSLPDIRQYLKIRKM*
Ga0079220_114689991	3300006806	Agricultural Soil	LGYITAVTMAAAAAALGLLAAMSVPDIRRYLKIRKM*
Ga0075434_1014104591	3300006871	Populus Rhizosphere	MRTLGYITAVTITAAAAALGLLAVMSLPDIRQYLKIRKM*
Ga0073928_100229316	3300006893	Iron-Sulfur Acid Spring	MRTLGYITAVTLTAAVAALGVLAVMAVPDARRYLKIKKM*
Ga0073928_101118425	3300006893	Iron-Sulfur Acid Spring	MRTLGYITTIILAAAAAALGLAAVKSLPDVRRYLTVKKM*
Ga0073928_101559234	3300006893	Iron-Sulfur Acid Spring	MRTLGYITTITLVAAAAALGLVAVKSLPDVRRYLTVRKM*
Ga0073928_101681121	3300006893	Iron-Sulfur Acid Spring	MRTLGYISAVVLTAASAGLGVLVVMSLPDARRYLKIRKM*
Ga0073928_105115062	3300006893	Iron-Sulfur Acid Spring	MRILGYVTAVTMAAASAALGLLAVMSLPDVRRYLKIRNM*
Ga0073928_106164951	3300006893	Iron-Sulfur Acid Spring	MRTFGYISAVVLTAASAGLGVLVVMGIPDLRRYLKFRKM*
Ga0079219_114064541	3300006954	Agricultural Soil	MRTLGYITAVTMAAAAAALGLLAAMSVPDMRRYLKIKKM*
Ga0079219_117695421	3300006954	Agricultural Soil	MRTLGYITAITMAATAAALGLLAVMSLPDIRQYLKIRKM*
Ga0134082_101741421	3300010303	Grasslands Soil	MRALGYITGVTIAAASAALALLVVLSPPDVRRYIKIRKM*
Ga0134125_105308422	3300010371	Terrestrial Soil	MRTLGYITAVTMAATAAALGLLAVMSLPDIRQYLKIRKM*
Ga0134125_106019951	3300010371	Terrestrial Soil	RRHAMRTLGYITAVTMAAAAAALGLLAVRSLPDMRQYLKIRKM*
Ga0134128_109253121	3300010373	Terrestrial Soil	MRTLGYITAVTMAAAAAALGLLAVMSLPDVRQYLKIRKM*
Ga0134126_112253571	3300010396	Terrestrial Soil	NRRHTMRTLGYITAVTMAATAAALGLLAVMSLPDIRQYLKIRKM*
Ga0134122_123236021	3300010400	Terrestrial Soil	MRTLGYITAVTMAAAAAALGLLAVMSLPDIRQYRKIRKM*
Ga0126344_13854591	3300010866	Boreal Forest Soil	MRTLGYIAAVTMATAATALGLLAAMSVPDMRRYMKIRKM*
Ga0151490_11627431	3300011107	Soil	MRTLGYTTAVTMAAAAAALGLLAVMSLPDIRQYLKIRKM*
Ga0150983_104222942	3300011120	Forest Soil	MRTLGYITAVTMAAAAAGLGLLAVMSLPDIRQYLKIRKM*
Ga0150983_109163842	3300011120	Forest Soil	MRTLGYITAVTTAAAVAALGLLTVLSLPDIRRYLRIKKM*
Ga0150983_111842741	3300011120	Forest Soil	MRTLGYITAVTMTAAAAALGLLAARSVPDIRRFLKIKKM*
Ga0150983_117366471	3300011120	Forest Soil	MRTLGYITTITMAAAAAALGLAAVKSLPDMRRYLTMRKI*
Ga0150983_119226271	3300011120	Forest Soil	MRTLGYITAITMAVAAASLGLLAVMSLPDLRKYLKIRKM*
Ga0150983_129418652	3300011120	Forest Soil	MMRTLGYVTTIILAAAAAALGLLAVKSLPDVRRYLKWRKM*
Ga0150983_155606801	3300011120	Forest Soil	MRALGYITAVTIAAAGAALALLVVMSVPDVRRYLKIRKM*
Ga0150983_157605383	3300011120	Forest Soil	MRTLGYITAVTLTAAATTLGVLAVMSVPDMRRYLKIKKM*
Ga0150983_165965712	3300011120	Forest Soil	MRTLGYISAATLAAGSVAVGLIAIMSWPDMQRYLKIRKM*
Ga0137377_100023392	3300012211	Vadose Zone Soil	MRALGYITAITIAAASAALALLVVMSVPDVRRYL*
Ga0137370_107518121	3300012285	Vadose Zone Soil	MRALGYITVVTIAAASAALALLVVLSVPDVRRYMKIRKM*
Ga0164303_108434122	3300012957	Soil	MRTLGYITAVTTAAAAAALGLLAAMSVPDMRRYLKIRKM*
Ga0164309_105969172	3300012984	Soil	MRALGYITAVTTAAAAAALGLLAAMSVPDMRRYLKIRKM*
Ga0164307_114643692	3300012987	Soil	MRTLGYITAVTMAATVAALGLLAVMSLPDIRQYLKIRKM*
Ga0164306_118140851	3300012988	Soil	MRTLGYITAVTMAATVAALGLLAVMSLPDIRQFLKIRKM*
Ga0164305_110787181	3300012989	Soil	MRTLGYITAVTMAATAAALGLLAVMSLPDIRQFLKIRKM*
Ga0132255_1056435881	3300015374	Arabidopsis Rhizosphere	MRTLGYITAVTMAATATALGLLAVMSLPDIRQYLKIRKM*
Ga0066655_107303133	3300018431	Grasslands Soil	MRALGYITGVTIAAASAALALLVVLSLPDVRRYIKIRKM
Ga0066662_107904022	3300018468	Grasslands Soil	MRALGYITAVTIAAASAALALLVVLSLPDVRRYIKIRKM
Ga0184574_1063871	3300019159	Soil	MRTLGHITAITMAAAAAALGLLAVKSLPDIRQYLKIRKM
Ga0184598_1198753	3300019182	Soil	MRTLGYITAVTMAAATAALGLLAVMSLPDIRQYLKIRKM
Ga0184603_1314071	3300019192	Soil	MRTLGYITAITMTAAAAGLGFLAVMSLPDIRQYLKIRKM
Ga0184603_1424751	3300019192	Soil	MMRTIGYVTTVTMAATAAALGLVAVKSLPDVRRYLTMRKI
Ga0210399_101109233	3300020581	Soil	MRTLGYTTAVTMAAAAAALGLLAVMSLPDLRRYLKIRKM
Ga0210399_102912772	3300020581	Soil	MRTLGYITAVTMAAAAAGLGLLAVMSLPDIRQYLKIRKM
Ga0210395_100034933	3300020582	Soil	MRRLGYVTTIIMAAAAAALGLLAVKSLPDARRYLTVRKM
Ga0210395_100828653	3300020582	Soil	MRTLGYISAITMAAAAAALGLLAVMALPDMRRYLKIRKM
Ga0210395_103841021	3300020582	Soil	MRTLGYITAVTMTAAAAALGLLAARSVPDIRRFLKIKKM
Ga0210395_105158721	3300020582	Soil	MRTLGYITAVTLTAAVAALGVLAVMAVPDARRYLKIKKM
Ga0210405_103655013	3300021171	Soil	MRTLGYITAVTMATAATALGLLAAMSVPDMRRYMK
Ga0210405_106022022	3300021171	Soil	MRTLGYITAVTLTAAAATLGVLVVMSVPDARRYLKIKKM
Ga0210405_107817183	3300021171	Soil	MRALGYITAVTIAAASAALALLVVMSVPDVQRYLKIRKM
Ga0210388_101706002	3300021181	Soil	MRALGYITAVAVAIAAAALGLLVIMSLPDIRQYLKIRKM
Ga0210388_104697763	3300021181	Soil	MRTLGYITAVTMAATAAALGLLAVKSVPDLRQYLKIRKM
Ga0210393_102364543	3300021401	Soil	MRTLGYITAVTMAAAATALGLLAAMSVPDMRRYMKIRKM
Ga0210393_102426153	3300021401	Soil	MRTLGYITAVTMATAATALGLLAAMSVPDMRRYMKIRKM
Ga0210393_114413862	3300021401	Soil	MRTLGYITAVTLTAAATTLGVLAVMSVPDMRRYLKIKKM
Ga0210385_100703292	3300021402	Soil	MRTLGYLTAVTMAAAAAALGLLAVMSLPDMRKYLKIRKM
Ga0210385_101323001	3300021402	Soil	MRTLGYATAVTMAAGAALGLLAVMSLPDIRHYLRIRKM
Ga0210385_102447292	3300021402	Soil	MRTLGYITAVTMTATAAALGLLAVTSLPDIRRYLKIRKM
Ga0210385_102473302	3300021402	Soil	MMRRLGYVTTIIMAAAAAALGLLAVKSLPDARRYLTVRKM
Ga0210397_101662953	3300021403	Soil	MRTLGYITAVTMAAAATALGLLAAMAVPDMRRYMKIRKM
Ga0210397_103263972	3300021403	Soil	MRGLGYITAVAITTAAAALGLLVIMSLPDIRQYLKIRKM
Ga0210391_105207212	3300021433	Soil	MRTLGYISATTMAAAAAAFGLLAVMSLPDIRRYLKIRKM
Ga0210390_102026063	3300021474	Soil	MRTLGYITAVTMAATAATLGLLAVKAVPDMRRYMKIRKM
Ga0210390_105120281	3300021474	Soil	KDRRHAMRTLGYITAVTMAATAAALGLLAVKSVPDLRQYLKIRKM
Ga0210390_105706822	3300021474	Soil	MRTLGYITAVTMAATATALGLLVVMSVPDMRRYLKIRKM
Ga0210390_106862951	3300021474	Soil	MRTLGYITAVTMAAAAAALGLLAVMSLPDMRKYLKIRKM
Ga0210390_110640232	3300021474	Soil	MRTLGYITAVTLTAAAATLGVLAVMAVPDMRRYLKIK
Ga0210402_101066924	3300021478	Soil	MRALGYITAVTTAAAAAALGLLAAMSVPDMRRYLKIRKM
Ga0210409_112476331	3300021559	Soil	MRTLGYITAATMATAATALGLLALMSLPDLRRYLKIRKM
Ga0212123_100523995	3300022557	Iron-Sulfur Acid Spring	MRTLGYITTIILAAAAAALGLAAVKSLPDVRRYLTVKKM
Ga0212123_107702611	3300022557	Iron-Sulfur Acid Spring	GYVTAVTMAAASAALGLLAVMSLPDVRRYLKIRNM
Ga0212123_108964501	3300022557	Iron-Sulfur Acid Spring	MRTFGYISAVVLTAASAGLGVLVVMGIPDLRRYLKIRKM
Ga0224560_1129552	3300023019	Soil	NRRHAMRTLGHITAITMAAAAAALGLLAVKSLPDIRQYLKIRKM
Ga0247544_1017301	3300023541	Soil	PAMRTLGYITAVTLTAATATLGVLAVMSVPDVRRYLKIKKM
Ga0247550_1021081	3300023660	Soil	MRTLGYITTITMAAAAAALGLVAVKSLPDVRRYLTMRK
Ga0207692_101987282	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MRTLGYISAVTMAATGAAFGVLAVKSVPDARRYLAMRKM
Ga0207692_111560001	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MRTLGNITAVTMAVAAAALGLLAVRSVPDVRRYLKIRKM
Ga0207699_100904431	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MRTLGYITAVTMAATAAALGLLAVMSLPDIRQYLKIR
Ga0207684_103987902	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MRALGYTTAVTTAAASAALALLVVMSVPDARRYLKIRKM
Ga0207707_108480012	3300025912	Corn Rhizosphere	MRTLGYITAVTMAAAAVALGLLAVTSLPDIRQYRKIRKM
Ga0207693_111358581	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	RTLGYITAVTMAATAAALGLLAVMSLPDIRQYRKIRKM
Ga0207663_101509002	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MRTLGNITAVTMAVAVAALGLLAVRSVPDVRRYLKIRKM
Ga0207700_104478141	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MRTLGYITAVTTAAAAAALGLLAAKSVPDIRRYLKIRKM
Ga0207700_111094891	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	DRRHAMRTLGYITAVTMAAAAVALGLLAVTSLPDIRQYLKIRKM
Ga0207664_119383572	3300025929	Agricultural Soil	MRTLGYITALTMAATAAALGLLAVMSLPDIRQYLKIRKM
Ga0209330_10077593	3300027619	Forest Soil	MRTLGYITAVTITAAAAALGLLAVTSLPDIRRFLKIKKM
Ga0209420_10147163	3300027648	Forest Soil	MRTLGYITAITMAAAAAGLGLLAVMSLPDIRQYLKIRKM
Ga0209178_14324501	3300027725	Agricultural Soil	MRTLGYITAVTMAATAAALGLLAAMSVPDMRRYLKIRKM
Ga0209274_100239371	3300027853	Soil	MRTLGYITAITMAAAAASLGLLAVMSLPDLRKYLKIRKM
Ga0209693_100007749	3300027855	Soil	MRTLGYISAVTMAAAAATLGLLAVMSLPDMRRYLKIRKM
Ga0209693_100992552	3300027855	Soil	MRTPGYITAVTMAAAAAALGLLTVTSLPDIRRYLKIKKM
Ga0209275_102217542	3300027884	Soil	MRTVGYITAVTMAVTAAAIGLLAVMSLPDMRRYMKIRKM
Ga0209380_103240831	3300027889	Soil	MRTVGYITAVTMAVTAAAIGLLAVKSLPDLQRYMKI
Ga0209068_105858332	3300027894	Watersheds	MRTLGYITTVTTAAAAAALGLLAAKSVPDIRRYLKIRKM
Ga0209006_102145622	3300027908	Forest Soil	MRRLGHVAAITVAVAAVALGLLAVRSLPEIRRYLAIRKM
Ga0209168_104517991	3300027986	Surface Soil	MRTLGYITAVTMTASAAALGLLAVMSLPDIRRYLKIRRM
Ga0307308_106106221	3300028884	Soil	MRTLGYITAVTTAAAALGLLAAMSMPDVRRYLKIRKM
Ga0311339_101592653	3300029999	Palsa	MRILGYITAITMAAAASALGLLAVRSAPDVRQYLKIRKM
Ga0265762_10369182	3300030760	Soil	MRTLGSITVITMAAAAAGLGLLAVMSLPDIRQYLKIRKM
Ga0265775_1127591	3300030762	Soil	MRTLGYITAVTLATASAALGLLVVMSLPDVRRYLKIRRM
Ga0074037_14690322	3300030803	Soil	MRTLGTITAVTMAAAAAALGLLAVMAVPDARRYLKIRRM
Ga0265756_1034632	3300030805	Soil	MRTLGYITAVTMATAATALGLLAAMSVPDLRRYMKIRKM
Ga0265777_1037442	3300030877	Soil	MRTLGYITAITMAAAAGLGLLAVMSLPDIRQYLKIRKM
Ga0265777_1082012	3300030877	Soil	MRTLGQITAVTLAVASAGLGLAMVMAWPDMQRYLKIRNM
Ga0265758_1012741	3300030884	Soil	MRTLGYITAITMAVTAATLGLLTAMSLPDIRRYLKIRKM
Ga0302324_1007730373	3300031236	Palsa	MMRTLGYITAVTMAAAGAAVGLLTVMSIPDVRRYLKIRNM
Ga0302324_1033916822	3300031236	Palsa	MRTFGYISAITMAAAASALGLLAVKSAPDVRRYLKIRKM
Ga0310686_1153489802	3300031708	Soil	MRILGYITAITMAAAAAALGLLAVRSAPDVRQYLKIMKM
Ga0307474_100612503	3300031718	Hardwood Forest Soil	MRTLGYITAVTMAAAVAALGLLAVMSLPDIRKYLKIKKM
Ga0307469_110383401	3300031720	Hardwood Forest Soil	MRTLGYITAVTMAAAAAALGLLAVMSLPDIRQYLKIRK
Ga0316037_1018172	3300031808	Soil	MRTLGQMTAVALAVTSAALGLLVVMSLPDLRRYLKIRKM
Ga0316047_1023342	3300031874	Soil	MRTLGQMTAVALAVTSAALGLLVVMSLPDLRRYLKIWKM
Ga0316053_1070601	3300032120	Soil	MRTLGYITAVTMTAAAAALGLLVARSVPDIRRYLKIKKM
Ga0307472_1008171982	3300032205	Hardwood Forest Soil	MRTLGYITAATMAAAAAALGLLAAMSVPDIRRYLKIRKM
Ga0348332_100884282	3300032515	Plant Litter	MRTLGYITAVTMAAAVAALGLLAVMSVPDIRQYLKIRKM
Ga0348332_101262981	3300032515	Plant Litter	MRTLGYITAVTMTAAAAALGLLVARSVPDIRRILKIKKM
Ga0348332_110382202	3300032515	Plant Litter	MRTLGYITAVTMAAAAAALGVLAVMSVPDMQRYLKIKKM
Ga0348332_120983561	3300032515	Plant Litter	MRALGYITAVTMAAAAATLGLLAAMSVPDMRRYLKIRRM
Ga0348332_145796023	3300032515	Plant Litter	MRTLGYITAVTLTAATATLGVLAVMSVPDVRRYLKIKKM
Ga0315741_102000711	3300032739	Forest Soil	MRTLGQITAVALAGAGAGLGLLMVMSWPDVQRYLKIRNM
Ga0315741_120340362	3300032739	Forest Soil	GEDRRDEMRTLGQITAVALAATSAALGLLMVMSWPDVRRYLKIRKM
Ga0335081_115629941	3300032892	Soil	MRTLGYITAVTMAAAAAPLGVLTVMSLPDARRYLKIRKM
Ga0335075_103886242	3300032896	Soil	MRALGLTIGVIIAVASMALGLLVITSLPDVRRYLKIRKM
Ga0335075_114669961	3300032896	Soil	MRTLGYTTAVTMTAVTAVLGLLAVMSLPDIRRYLKIKKM
Ga0335072_1000750415	3300032898	Soil	MRTLGYLTAVTMAAAAAALGLLTMMSLPDIRRYLKIRKM
Ga0247830_116978292	3300033551	Soil	RHTMRTLGYITAVTIAAAAAVLGLLAVMSLPDIRQYLKIRKM

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F040612

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences