Metagenome / Metatranscriptome Family F041365

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F041365
Family Type	Metagenome / Metatranscriptome
Number of Sequences	160
Average Sequence Length	43 residues
Representative Sequence	IEVVSPAMTREYEDFLKNAQLSVMSDPESLRLMRATHVKEPA
Number of Associated Samples	122
Number of Associated Scaffolds	160

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	5.62 %
% of genes near scaffold ends (potentially truncated)	88.75 %
% of genes from short scaffolds (< 2000 bps)	93.12 %
Associated GOLD sequencing projects	113
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (58.125 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (28.125 % of family members)
Environment Ontology (ENVO)	Unclassified (36.875 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (38.125 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.86% β-sheet: 0.00% Coil/Unstructured: 57.14%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 160 Family Scaffolds
PF07883	Cupin_2	23.12
PF02615	Ldh_2	13.12
PF02798	GST_N	9.38
PF00857	Isochorismatase	3.75
PF03118	RNA_pol_A_CTD	1.25
PF12681	Glyoxalase_2	1.25
PF13417	GST_N_3	1.25
PF00216	Bac_DNA_binding	1.25
PF00106	adh_short	0.62
PF05532	CsbD	0.62
PF05117	DUF695	0.62
PF13561	adh_short_C2	0.62
PF13085	Fer2_3	0.62
PF10415	FumaraseC_C	0.62
PF13432	TPR_16	0.62
PF13410	GST_C_2	0.62
PF13610	DDE_Tnp_IS240	0.62
PF00903	Glyoxalase	0.62
PF13602	ADH_zinc_N_2	0.62
PF02910	Succ_DH_flav_C	0.62
PF05721	PhyH	0.62
PF02771	Acyl-CoA_dh_N	0.62
PF16952	Gln-synt_N_2	0.62
PF05199	GMC_oxred_C	0.62
PF03476	MOSC_N	0.62
PF08031	BBE	0.62
PF05013	FGase	0.62
PF02787	CPSase_L_D3	0.62
PF02738	MoCoBD_1	0.62
PF00202	Aminotran_3	0.62
PF12697	Abhydrolase_6	0.62
PF07690	MFS_1	0.62
PF13193	AMP-binding_C	0.62
PF01968	Hydantoinase_A	0.62
PF00126	HTH_1	0.62

COG ID	Name	Functional Category	% Frequency in 160 Family Scaffolds
COG2055	Malate/lactate/ureidoglycolate dehydrogenase, LDH2 family	Energy production and conversion [C]	13.12
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	3.75
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	3.75
COG0202	DNA-directed RNA polymerase, alpha subunit/40 kD subunit	Transcription [K]	1.25
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	1.25
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.62
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.62
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	0.62
COG3217	N-hydroxylaminopurine reductase subunit YcbX, contains MOSC domain	Defense mechanisms [V]	0.62
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.62
COG3741	N-formylglutamate amidohydrolase	Amino acid transport and metabolism [E]	0.62
COG3931	Predicted N-formylglutamate amidohydrolase	Amino acid transport and metabolism [E]	0.62
COG5285	Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.62

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.12 %
All Organisms	root	All Organisms	41.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.12 %
cellular organisms	root	All Organisms → cellular organisms	41.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.12 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	41.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.12 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	31.88 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.62 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.12 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	26.88 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.62 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.62 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.12 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	8.75 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.12 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.25 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.62 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.62 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.12 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	6.25 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.25 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	0.62 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.62 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.62 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.62 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.12 %
unclassified Acetobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → unclassified Acetobacteraceae	5.62 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.25 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.62 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.62 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.62 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.62 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.12 %
Acetobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → unclassified Acetobacteraceae → Acetobacteraceae bacterium	5.62 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.25 %
unclassified Hyphomicrobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium	0.62 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.62 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.62 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.62 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.12 %
Acetobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → unclassified Acetobacteraceae → Acetobacteraceae bacterium	5.62 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.25 %
unclassified Mycobacterium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium	0.62 %
Hyphomicrobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp.	0.62 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.62 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.62 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.12 %
Acetobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → unclassified Acetobacteraceae → Acetobacteraceae bacterium	5.62 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.25 %
Mycobacterium sp. Marseille-P9652	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. Marseille-P9652	0.62 %
Hyphomicrobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp.	0.62 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.62 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.62 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.62 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001641\|JGI20238J16299_101994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	624	Open in IMG/M
3300004091\|Ga0062387_101426778	Not Available	552	Open in IMG/M
3300004156\|Ga0062589_101133321	All Organisms → cellular organisms → Bacteria → Proteobacteria	743	Open in IMG/M
3300005332\|Ga0066388_108690246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	505	Open in IMG/M
3300005458\|Ga0070681_10035427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5014	Open in IMG/M
3300005614\|Ga0068856_101765489	Not Available	631	Open in IMG/M
3300005764\|Ga0066903_104752437	Not Available	723	Open in IMG/M
3300005764\|Ga0066903_104814815	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300005841\|Ga0068863_101285321	Not Available	738	Open in IMG/M
3300005843\|Ga0068860_100204022	Not Available	1917	Open in IMG/M
3300006028\|Ga0070717_10221654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1662	Open in IMG/M
3300006174\|Ga0075014_100205579	Not Available	995	Open in IMG/M
3300006176\|Ga0070765_101323979	Not Available	679	Open in IMG/M
3300006806\|Ga0079220_10317611	Not Available	972	Open in IMG/M
3300006806\|Ga0079220_12088717	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → unclassified Acetobacteraceae → Acetobacteraceae bacterium	507	Open in IMG/M
3300006871\|Ga0075434_101090145	Not Available	812	Open in IMG/M
3300006881\|Ga0068865_101269593	Not Available	654	Open in IMG/M
3300006918\|Ga0079216_11383268	Not Available	581	Open in IMG/M
3300009101\|Ga0105247_10439061	Not Available	938	Open in IMG/M
3300009148\|Ga0105243_11276278	Not Available	751	Open in IMG/M
3300009162\|Ga0075423_12520115	All Organisms → cellular organisms → Bacteria → Proteobacteria	561	Open in IMG/M
3300009545\|Ga0105237_10765072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → unclassified Acetobacteraceae → Acetobacteraceae bacterium	972	Open in IMG/M
3300009551\|Ga0105238_10682388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1039	Open in IMG/M
3300009792\|Ga0126374_10468725	All Organisms → cellular organisms → Bacteria	900	Open in IMG/M
3300009826\|Ga0123355_10445705	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1635	Open in IMG/M
3300009826\|Ga0123355_10877500	Not Available	980	Open in IMG/M
3300009826\|Ga0123355_11077530	All Organisms → cellular organisms → Bacteria	840	Open in IMG/M
3300009826\|Ga0123355_11125382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	813	Open in IMG/M
3300009826\|Ga0123355_11268296	Not Available	743	Open in IMG/M
3300009826\|Ga0123355_11735819	Not Available	593	Open in IMG/M
3300009826\|Ga0123355_11940671	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. Marseille-P9652	549	Open in IMG/M
3300010048\|Ga0126373_12554007	Not Available	569	Open in IMG/M
3300010048\|Ga0126373_12577297	Not Available	567	Open in IMG/M
3300010049\|Ga0123356_10071429	All Organisms → cellular organisms → Bacteria → Proteobacteria	3258	Open in IMG/M
3300010049\|Ga0123356_12972596	Not Available	592	Open in IMG/M
3300010146\|Ga0126320_1448514	Not Available	819	Open in IMG/M
3300010162\|Ga0131853_10295694	All Organisms → cellular organisms → Bacteria	1716	Open in IMG/M
3300010361\|Ga0126378_12208895	Not Available	628	Open in IMG/M
3300010361\|Ga0126378_12449573	Not Available	596	Open in IMG/M
3300010366\|Ga0126379_10426655	All Organisms → cellular organisms → Bacteria	1381	Open in IMG/M
3300010366\|Ga0126379_12761557	Not Available	587	Open in IMG/M
3300010366\|Ga0126379_12850447	Not Available	578	Open in IMG/M
3300010366\|Ga0126379_13091429	Not Available	557	Open in IMG/M
3300010369\|Ga0136643_10581495	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300010373\|Ga0134128_10724493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1104	Open in IMG/M
3300010376\|Ga0126381_100083905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4019	Open in IMG/M
3300010376\|Ga0126381_102015124	Not Available	832	Open in IMG/M
3300010401\|Ga0134121_12185514	Not Available	590	Open in IMG/M
3300011444\|Ga0137463_1358488	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300012208\|Ga0137376_11176959	Not Available	655	Open in IMG/M
3300012211\|Ga0137377_11589401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	578	Open in IMG/M
3300012212\|Ga0150985_102747374	Not Available	1499	Open in IMG/M
3300012212\|Ga0150985_106856267	Not Available	773	Open in IMG/M
3300012212\|Ga0150985_116433675	Not Available	691	Open in IMG/M
3300012212\|Ga0150985_118208726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → unclassified Acetobacteraceae → Acetobacteraceae bacterium	574	Open in IMG/M
3300012349\|Ga0137387_10691978	Not Available	738	Open in IMG/M
3300012361\|Ga0137360_10448837	All Organisms → cellular organisms → Bacteria → Proteobacteria	1093	Open in IMG/M
3300012361\|Ga0137360_10816347	Not Available	803	Open in IMG/M
3300012362\|Ga0137361_10438243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1200	Open in IMG/M
3300012469\|Ga0150984_108277871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → unclassified Acetobacteraceae → Acetobacteraceae bacterium	519	Open in IMG/M
3300012469\|Ga0150984_111925074	Not Available	1062	Open in IMG/M
3300012469\|Ga0150984_122830872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → unclassified Acetobacteraceae → Acetobacteraceae bacterium	521	Open in IMG/M
3300012582\|Ga0137358_10549680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	776	Open in IMG/M
3300012923\|Ga0137359_10468689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp.	1113	Open in IMG/M
3300012957\|Ga0164303_11353967	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	530	Open in IMG/M
3300012971\|Ga0126369_13290909	Not Available	529	Open in IMG/M
3300012971\|Ga0126369_13439175	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300012984\|Ga0164309_11966211	Not Available	501	Open in IMG/M
3300013104\|Ga0157370_10891271	Not Available	807	Open in IMG/M
3300016294\|Ga0182041_10736752	Not Available	876	Open in IMG/M
3300016341\|Ga0182035_11032689	Not Available	729	Open in IMG/M
3300016357\|Ga0182032_11984348	Not Available	510	Open in IMG/M
3300016387\|Ga0182040_11422440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	588	Open in IMG/M
3300016422\|Ga0182039_10220842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1525	Open in IMG/M
3300016422\|Ga0182039_11805648	Not Available	560	Open in IMG/M
3300016445\|Ga0182038_10076684	All Organisms → cellular organisms → Bacteria	2344	Open in IMG/M
3300016445\|Ga0182038_11867273	Not Available	543	Open in IMG/M
3300017955\|Ga0187817_10010584	All Organisms → cellular organisms → Bacteria → Proteobacteria	5285	Open in IMG/M
3300018007\|Ga0187805_10097790	Not Available	1326	Open in IMG/M
3300018060\|Ga0187765_11166566	Not Available	538	Open in IMG/M
3300018084\|Ga0184629_10497611	Not Available	635	Open in IMG/M
3300018090\|Ga0187770_10792893	Not Available	758	Open in IMG/M
3300020582\|Ga0210395_11010201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	616	Open in IMG/M
3300021181\|Ga0210388_10708827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	876	Open in IMG/M
3300021377\|Ga0213874_10135236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	850	Open in IMG/M
3300021475\|Ga0210392_10552799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	851	Open in IMG/M
3300021476\|Ga0187846_10441826	Not Available	533	Open in IMG/M
3300021560\|Ga0126371_13594890	Not Available	523	Open in IMG/M
3300022523\|Ga0242663_1053085	Not Available	719	Open in IMG/M
3300022532\|Ga0242655_10068722	All Organisms → cellular organisms → Bacteria	914	Open in IMG/M
3300022722\|Ga0242657_1250467	Not Available	508	Open in IMG/M
3300025627\|Ga0208220_1031967	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1625	Open in IMG/M
3300025927\|Ga0207687_10021383	Not Available	4298	Open in IMG/M
3300026023\|Ga0207677_11674809	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300026035\|Ga0207703_11446943	Not Available	661	Open in IMG/M
3300026035\|Ga0207703_12135502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → unclassified Acetobacteraceae → Acetobacteraceae bacterium	536	Open in IMG/M
3300026088\|Ga0207641_11586525	Not Available	656	Open in IMG/M
3300027070\|Ga0208365_1008798	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1235	Open in IMG/M
3300027074\|Ga0208092_102613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1024	Open in IMG/M
3300028906\|Ga0308309_11746884	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → unclassified Acetobacteraceae → Acetobacteraceae bacterium	527	Open in IMG/M
3300030993\|Ga0308190_1125853	Not Available	587	Open in IMG/M
3300031058\|Ga0308189_10357669	Not Available	590	Open in IMG/M
3300031231\|Ga0170824_126968719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1135	Open in IMG/M
3300031474\|Ga0170818_107057481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1279	Open in IMG/M
3300031544\|Ga0318534_10159514	Not Available	1303	Open in IMG/M
3300031544\|Ga0318534_10523533	Not Available	677	Open in IMG/M
3300031546\|Ga0318538_10508012	Not Available	653	Open in IMG/M
3300031549\|Ga0318571_10134627	Not Available	841	Open in IMG/M
3300031549\|Ga0318571_10332018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	579	Open in IMG/M
3300031564\|Ga0318573_10163457	Not Available	1171	Open in IMG/M
3300031668\|Ga0318542_10146590	Not Available	1170	Open in IMG/M
3300031668\|Ga0318542_10166335	Not Available	1102	Open in IMG/M
3300031679\|Ga0318561_10368964	Not Available	788	Open in IMG/M
3300031679\|Ga0318561_10515454	Not Available	658	Open in IMG/M
3300031679\|Ga0318561_10589702	Not Available	612	Open in IMG/M
3300031681\|Ga0318572_10009449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4569	Open in IMG/M
3300031719\|Ga0306917_10729986	Not Available	778	Open in IMG/M
3300031724\|Ga0318500_10148153	Not Available	1103	Open in IMG/M
3300031736\|Ga0318501_10117561	Not Available	1343	Open in IMG/M
3300031744\|Ga0306918_10005690	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	6694	Open in IMG/M
3300031744\|Ga0306918_11107789	Not Available	613	Open in IMG/M
3300031744\|Ga0306918_11358842	Not Available	545	Open in IMG/M
3300031751\|Ga0318494_10363424	Not Available	838	Open in IMG/M
3300031765\|Ga0318554_10224375	Not Available	1070	Open in IMG/M
3300031765\|Ga0318554_10770241	Not Available	538	Open in IMG/M
3300031768\|Ga0318509_10697376	Not Available	564	Open in IMG/M
3300031771\|Ga0318546_11325111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	506	Open in IMG/M
3300031777\|Ga0318543_10218613	Not Available	847	Open in IMG/M
3300031780\|Ga0318508_1008981	All Organisms → cellular organisms → Bacteria	2204	Open in IMG/M
3300031792\|Ga0318529_10101328	Not Available	1300	Open in IMG/M
3300031792\|Ga0318529_10184354	Not Available	966	Open in IMG/M
3300031795\|Ga0318557_10380999	Not Available	648	Open in IMG/M
3300031798\|Ga0318523_10279146	Not Available	834	Open in IMG/M
3300031799\|Ga0318565_10119335	Not Available	1272	Open in IMG/M
3300031846\|Ga0318512_10120345	Not Available	1249	Open in IMG/M
3300031846\|Ga0318512_10487203	Not Available	624	Open in IMG/M
3300031860\|Ga0318495_10079045	All Organisms → cellular organisms → Bacteria	1470	Open in IMG/M
3300031879\|Ga0306919_11223472	Not Available	570	Open in IMG/M
3300031890\|Ga0306925_11215524	All Organisms → cellular organisms → Bacteria → Proteobacteria	754	Open in IMG/M
3300031894\|Ga0318522_10150297	Not Available	877	Open in IMG/M
3300031910\|Ga0306923_12104537	All Organisms → cellular organisms → Bacteria → Proteobacteria	569	Open in IMG/M
3300031912\|Ga0306921_10150501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2723	Open in IMG/M
3300031912\|Ga0306921_11077718	Not Available	902	Open in IMG/M
3300031947\|Ga0310909_10695019	Not Available	845	Open in IMG/M
3300031981\|Ga0318531_10099687	Not Available	1279	Open in IMG/M
3300031996\|Ga0308176_11576549	Not Available	700	Open in IMG/M
3300032025\|Ga0318507_10143293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1019	Open in IMG/M
3300032035\|Ga0310911_10348375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	855	Open in IMG/M
3300032054\|Ga0318570_10044859	All Organisms → cellular organisms → Bacteria	1814	Open in IMG/M
3300032059\|Ga0318533_10259600	Not Available	1255	Open in IMG/M
3300032076\|Ga0306924_10086867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3515	Open in IMG/M
3300032076\|Ga0306924_11742787	Not Available	651	Open in IMG/M
3300032076\|Ga0306924_12542226	Not Available	512	Open in IMG/M
3300032089\|Ga0318525_10392718	Not Available	711	Open in IMG/M
3300032180\|Ga0307471_101659772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	794	Open in IMG/M
3300032205\|Ga0307472_100137377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1761	Open in IMG/M
3300033134\|Ga0335073_10360387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1718	Open in IMG/M
3300033289\|Ga0310914_11312577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → unclassified Acetobacteraceae → Acetobacteraceae bacterium	626	Open in IMG/M
3300033290\|Ga0318519_10580427	Not Available	680	Open in IMG/M
3300034661\|Ga0314782_146467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → unclassified Acetobacteraceae → Acetobacteraceae bacterium	576	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	78.12%
Host-Associated	Host-Associated	21.88%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.75%
Plants	Host-Associated → Plants	15.00%
Arthropoda	Host-Associated → Arthropoda	6.88%
Aquatic	Environmental → Aquatic	4.38%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.12%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.50%
Digestive System	Host-Associated → Arthropoda → Digestive System	6.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.88%
Freshwater	Environmental → Aquatic → Freshwater	2.50%
Sediment	Environmental → Aquatic → Sediment	1.88%
Cave	Environmental → Terrestrial → Cave	0.62%
Roots	Host-Associated → Plants → Roots	0.62%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	65.00%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	6.88%
Loam	Environmental → Terrestrial → Soil → Loam	6.25%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.50%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.88%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.88%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.88%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.62%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.62%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.62%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	43.12%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.50%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	6.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.00%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.88%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.88%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.25%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.25%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.25%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.62%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.62%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.62%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.62%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.62%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	28.12%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.75%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	6.88%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.12%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.50%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.88%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.88%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.25%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.25%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.25%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.25%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.25%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.25%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.25%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.25%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.25%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.25%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.62%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.62%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.62%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.62%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.62%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.62%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.62%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.62%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.62%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.62%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.62%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.62%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.62%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.62%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001641	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009826	Embiratermes neotenicus P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P1	Host-Associated	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010049	Embiratermes neotenicus P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P3	Host-Associated	Open in IMG/M
3300010146	Soil microbial communities from California, USA to study soil gas exchange rates - JR-CA-SND metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010162	Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)	Host-Associated	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010369	Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 3)	Host-Associated	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021377	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7	Host-Associated	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022523	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025627	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027070	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004 (SPAdes)	Environmental	Open in IMG/M
3300027074	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF014 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030993	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_185 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300034661	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI20238J16299_1019942	3300001641	Forest Soil	APDPVSVTMPAREYEDFLKNARTEIMGDPEAVRLMRATHVKEPV*
Ga0062387_1014267782	3300004091	Bog Forest Soil	LMIEVVSPAMAREYEDFLRNAQLSVMNDPESLRLMRATHIKVQA*
Ga0062589_1011333212	3300004156	Soil	MIEVASPDMEQEYKAFLQNARTEVMSDPESVRLMRATHIKEPA*
Ga0066388_1086902462	3300005332	Tropical Forest Soil	RLMIEVVSPEMAREYEGFLKNARTEIMGDPEAVRLMRATHVKEPG*
Ga0070681_100354271	3300005458	Corn Rhizosphere	MIEVVSPPMAEEYENFLKTAHLTVMSDAESLRLMRATHIKEPV*
Ga0068856_1017654892	3300005614	Corn Rhizosphere	SPTMAREYEDFLKNAQMSVMNDAESLRLMRATHIKEHD*
Ga0066903_1047524371	3300005764	Tropical Forest Soil	MAREYEDFVKNAGTKMRSDPEALRLMRATHIAKEAV*
Ga0066903_1048148152	3300005764	Tropical Forest Soil	MIEIAPPAMAQEYEDFLKGAQTAMMSDPESLRLMRATHLKE
Ga0068863_1012853211	3300005841	Switchgrass Rhizosphere	IEVASPDMEQEYKAFLQNARTEVMSDPESVRLMRATHIKEPV*
Ga0068860_1002040221	3300005843	Switchgrass Rhizosphere	VSPTMAQEYVDFLNSAQPAVMNDPEALRLMRATHIKESA*
Ga0070717_102216543	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VATPEMAREYKDFLENAQLSVMNDPGSLRLMRATHIEERA*
Ga0075014_1002055792	3300006174	Watersheds	LENRLMIEVVSPAMAREYEDFLKSAQTAMMGDPESLRLMRATHIKQPA*
Ga0070765_1013239791	3300006176	Soil	MIEVVSPDMAREYQEFLAGDQRSMMSDPESLRLMRATHMKEPA
Ga0079220_103176111	3300006806	Agricultural Soil	LMIEVVSPTMAREYEDFLKNAQMSVMNDAESLRLMRATHIKEHA*
Ga0079220_120887172	3300006806	Agricultural Soil	WIENRLMIEIAPPEMVREYQEFLKDSRTGVMNDPESVRLMRATHIKEPA*
Ga0075434_1010901451	3300006871	Populus Rhizosphere	VASPDMEQEYKDFLQNARPEVMSDPEAVRLMRATHIKEPA*
Ga0068865_1012695931	3300006881	Miscanthus Rhizosphere	IAPPEMVREYQEFLKDSRTGVMNDPESVRLMRATHIKEPA*
Ga0079216_113832682	3300006918	Agricultural Soil	RLMVEVATPAMAQEYRDFLNGAQTATMSDPESARLMRATHLKEPAKKPA*
Ga0105247_104390612	3300009101	Switchgrass Rhizosphere	ATPAMAQEYMDFLQGMHQAAMNDPESVRLMRATHIKETA*
Ga0105243_112762783	3300009148	Miscanthus Rhizosphere	VVSPTMAREYEDFLKNAQLSVMDDPESLRRMRATHIKEPA*
Ga0075423_125201152	3300009162	Populus Rhizosphere	MIEVVSPEIAREYEDFLKNARTEIMGDPEAVRLMRATHVEEPA*
Ga0105237_107650723	3300009545	Corn Rhizosphere	VSPAMAREYEDFLKNAQLSVMNDPESLRRMRATHIKEPA*
Ga0105238_106823881	3300009551	Corn Rhizosphere	ATPAMAQEYMDFLQVMHQAAMNDPESVRLMRATHIKETA*
Ga0126374_104687251	3300009792	Tropical Forest Soil	MIEIAPPAMAQEYEDFLKGAQTAMMSDPESLRLMRATHLKEPVKEPA*
Ga0123355_104457053	3300009826	Termite Gut	EVVSPAMAREYEDFLRNAQLSVMNDPESLRLMRATHIEERV*
Ga0123355_108775001	3300009826	Termite Gut	MAQEYLDFLKGARTEMMSDPEAIRLMRATHVKEPAK*
Ga0123355_110775301	3300009826	Termite Gut	MIEVVSPAMAQEYEDFLRNAQHSVMNDPESLRLMRATHIEERV*
Ga0123355_111253821	3300009826	Termite Gut	LDFLTGARTAMMSDPESTRLMQATHVKEPAKKPG*
Ga0123355_112682961	3300009826	Termite Gut	TPAMAQEYLDFLKGARPEMMSDPESIRLMRATHAKELVK*
Ga0123355_117358191	3300009826	Termite Gut	MIEVVSPAMAREYEDFLRNAQLSVMNDPESLRLMRATHIEERV*
Ga0123355_119406712	3300009826	Termite Gut	EVVSPAMAQEYQDFLKNAQMSVMNDPESLRLMRATHLAPQPAA*
Ga0126373_125540071	3300010048	Tropical Forest Soil	EFWVENRFMIEVAPPAMAKEYLEFLKRPRTTLMNDPESLRLMRTTHAKEREPA*
Ga0126373_125772971	3300010048	Tropical Forest Soil	NRLMIEVVSPAMAREYQDFLQNAQLSAMSDPESRRLMRATHVARQHSA*
Ga0123356_100714295	3300010049	Termite Gut	SPAMAREYEDFLRNAQLSVMNDPESLRLMRATHIEERV*
Ga0123356_129725962	3300010049	Termite Gut	WLENRLMLEVVSPAMAREYEDFLRNAQLSVMNDPESLRLMRARHIEERV*
Ga0126320_14485143	3300010146	Soil	ENRLMIEVVSPAMAREYENFLKNAQMSVMNDAESLRLMRATHIKEQA*
Ga0131853_102956943	3300010162	Termite Gut	ATPAMAQEYVDFLKGAHTATMSDPESTRLMQATHVKEPAK*
Ga0126378_122088951	3300010361	Tropical Forest Soil	MIEGVSPAMACEYEDFLKNAQLSLMSDPESLRLMRATLIKEPA*
Ga0126378_124495732	3300010361	Tropical Forest Soil	AREYEDFLKGAQTAMMSDPESLRLMRATHLKAPVKEPA*
Ga0126379_104266553	3300010366	Tropical Forest Soil	LMIEVVSPPMAREYEDFLQNAQLSLMSDPESRRRMRATHVARQHSA*
Ga0126379_127615571	3300010366	Tropical Forest Soil	VASPAMMQEYLGFLSSVQPATMNDPEALRLMRATHVKEPA*
Ga0126379_128504472	3300010366	Tropical Forest Soil	VVWPAMAREYQHFLKGAQTAMMSDPASLRLMRATHLKESVKEPA*
Ga0126379_130914291	3300010366	Tropical Forest Soil	PAMASEYENFLRNAQPSVMNDPEALRLMRATHIEAQA*
Ga0136643_105814951	3300010369	Termite Gut	MIEVVSPAMAREYEDFLRNAQLSVMNDPESLRLMRATHIEERS*
Ga0134128_107244933	3300010373	Terrestrial Soil	AREYEDFLKNAQMSVMNDAESLRLMRATHIKEQV*
Ga0126381_1000839052	3300010376	Tropical Forest Soil	MIEIASPKTAREYEDFLKSARTEVIGDSDAVRLIRATHVND*
Ga0126381_1020151241	3300010376	Tropical Forest Soil	MIEGVSPAMACEYEDFLKNAQLSLMSDPESLRLMRATHIKEPA*
Ga0134121_121855142	3300010401	Terrestrial Soil	LMLEVVSPTMAQEYVDFLNSAQPAVMNDPEALRLMRATHIKESA*
Ga0137463_13584882	3300011444	Soil	MIEVAPPDMEQEYKAFLQNARPEVMGDPESVRLMRATHIKEPA*
Ga0137376_111769592	3300012208	Vadose Zone Soil	MIEIATPKMVREYKRFLKSSQVSQMSDPEALRLMRATHIKEPA*
Ga0137377_115894012	3300012211	Vadose Zone Soil	LENRLMIEVVSPEMAREYEVFLKNARTEIMGDPEAVRLMRATHVKEPA*
Ga0150985_1027473743	3300012212	Avena Fatua Rhizosphere	APPEMVREYQEFLKNSRTEVMSDPESVRLMRATHIKEPA*
Ga0150985_1068562672	3300012212	Avena Fatua Rhizosphere	VIEFWIENRLMIEIAPPEMVREYQEFLKDSRTEVMSDPESVRLMRATHIKEPA*
Ga0150985_1164336751	3300012212	Avena Fatua Rhizosphere	NRLMIEIAPPEMVREYQEFLKNSRTEVMSDPESVRLMRATHIKESA*
Ga0150985_1182087261	3300012212	Avena Fatua Rhizosphere	VIEFWIENRLMIEIAPPEMAREYQEFLKNARTDVMNDPEAVRLMRATHIKEPA*
Ga0137387_106919782	3300012349	Vadose Zone Soil	LMIEVVSPAMEREYLDFLKGAQTSMMSDPESLRLMRATHVKETA*
Ga0137360_104488371	3300012361	Vadose Zone Soil	EDRVKGAQPSMMSDPKALRLMRATHLREPVKEPA*
Ga0137360_108163473	3300012361	Vadose Zone Soil	ENRLMIEVVPPAMVREYEDLVKDAQTSMRSDAESLRLMRATHIKEPA*
Ga0137361_104382434	3300012362	Vadose Zone Soil	PEMAREYEVFLKNARTEIMGDPEAVRLMRATHVKEPA*
Ga0150984_1082778712	3300012469	Avena Fatua Rhizosphere	AREYQEFLKNARTEVMSDPDSVRLMRATHIKEPA*
Ga0150984_1119250741	3300012469	Avena Fatua Rhizosphere	IENRLMIEIAPPEMVREYQEFLKDSRTEVMSYPESVRLMRATHIKEPA*
Ga0150984_1228308721	3300012469	Avena Fatua Rhizosphere	MAREYQEFLKSARTGVMNDPESVRLMRATHIKEPA*
Ga0137358_105496802	3300012582	Vadose Zone Soil	MIEVVSPEMAREYEVFLKNARTEIMGDPEAVRFMRATHVKEPA*
Ga0137359_104686892	3300012923	Vadose Zone Soil	EYEDRVKGAQPSMMSDRKALRLMRATHLREPVKEPA*
Ga0164303_113539672	3300012957	Soil	LRIDVVSPERVGEYEDFLKNARTEIMGDPETVRLMRATHVKEPV*
Ga0126369_132909091	3300012971	Tropical Forest Soil	KMVREYKTFLKNAQVSQMSDPESLRLMRATHIKEPA*
Ga0126369_134391751	3300012971	Tropical Forest Soil	MIEIAPPAMAQEYEDFLKGAQTAMMSDPESLRLMRATHLKERV
Ga0164309_119662112	3300012984	Soil	LIEVVSPAMAREYEDFLKGAQTSMMRDPESLRLMRATHVKEPT*
Ga0157370_108912712	3300013104	Corn Rhizosphere	IEVAPPALRAESENFTHTAATGMRNDPEALRLMRATHIKEPA*
Ga0182041_107367522	3300016294	Soil	AMAREYEDFLKGAQTATMSDPESLRLMRATHLKEPVQEPA
Ga0182035_110326892	3300016341	Soil	RLMIEVVSPAMAREYEEFLKGAQTAMMSDPESLRLMRATHLKEPVKEPA
Ga0182032_119843481	3300016357	Soil	MAREYEDFLKGAQTAMMSDPESLRLMRATHLKEPVKEPA
Ga0182040_114224401	3300016387	Soil	NRLMIEVVSPEMAREYKDFLKNARTEIMGDPEAMRLMRATHVKEPAKE
Ga0182039_102208421	3300016422	Soil	RLMIEVVSPAMAREYEDFLKNAQLSVMSDPESLRLMRVTHTKEPA
Ga0182039_118056482	3300016422	Soil	ASPAMAREYEDFLKGAQTAMMSDPEALRLMRATHLKEPVKEPA
Ga0182038_100766841	3300016445	Soil	MAREYEDFLKGAQTAMMSDPEALRLMRATHLKEPVKEPA
Ga0182038_118672733	3300016445	Soil	AREYEGFLKTTQLSMMNDPESLRLMRATHAKEPGR
Ga0187817_100105845	3300017955	Freshwater Sediment	YEDFLKGAQTAMMSDPESLRLMRATHLKEPVKEPA
Ga0187805_100977901	3300018007	Freshwater Sediment	FWLENRLMIEVAPPDMAQEYEDFLKSAATSMRNDPEALRLMRATHLKEPA
Ga0187765_111665661	3300018060	Tropical Peatland	AMAKEYLEFLKRPRTALMNDPESLRLMRATHAKARETV
Ga0184629_104976112	3300018084	Groundwater Sediment	MVEVASPAMAREYEDFLNTAQVSAMNDPESLRAMRESYLEKQPS
Ga0187770_107928932	3300018090	Tropical Peatland	WLENRLMIEVAPPDMAREYENFLGGAAKTMRNDPEALRLMRATHIKEPA
Ga0210395_110102012	3300020582	Soil	EVATPAMTEEYLEFLKSARTTTMSDPASIRLMQATHLKEPAK
Ga0210388_107088272	3300021181	Soil	VSPEMAREYEDFLKNSRTEIMGDPEAVRLMRATHVKEPV
Ga0213874_101352361	3300021377	Plant Roots	MIEVVSPEMAREYEGFLKNARTEIMGDPEAVRLMRATHVKEPA
Ga0210392_105527991	3300021475	Soil	VSPEMAREYEDFLKNARTEIMGDPEAVRLMRATHVKEPV
Ga0187846_104418261	3300021476	Biofilm	VVSPAMAREYEDFLKGAQTAMMSDPESLRLMRATHLKEPMKEPA
Ga0126371_135948902	3300021560	Tropical Forest Soil	MMEVVSPAMARECEDFLTNAQLSVMSDPESLPLMGVTHIKAPA
Ga0242663_10530851	3300022523	Soil	MIEVVSPAMAREYQDFVKNAATAMRSDPEALRLMRATHIAPQAPP
Ga0242655_100687222	3300022532	Soil	MIEVVSPEMAREYEDFLKNARTEIMGDPEAVRLMRATHVKEPV
Ga0242657_12504672	3300022722	Soil	MIEVAPPDMAREYEDFLANAAPAMRNDAEALRLMRATHIKEPA
Ga0208220_10319671	3300025627	Arctic Peat Soil	DMAAEYENFLKTAANSMRNDPEALRLMRATHIKEPA
Ga0207687_1002138313	3300025927	Miscanthus Rhizosphere	WLENRLMLEVVSPTMAQEYVDFLKSAQPAVMNDPEALRLMRATHIKESA
Ga0207677_116748092	3300026023	Miscanthus Rhizosphere	VVSPAMAREYEDFLKNAQLSVMDDPESLRQMRATHIKEPA
Ga0207703_114469431	3300026035	Switchgrass Rhizosphere	SPTMAQEYVDFLNSAQPAVMNDPEALRLMRATHIKESA
Ga0207703_121355022	3300026035	Switchgrass Rhizosphere	RFMIEVASPDMEQEYKDFLQNARPEVMSDPEAVRLMRATHIKEPA
Ga0207641_115865251	3300026088	Switchgrass Rhizosphere	MEQEYKAFLQNARTEVMSDPESVRLMRATHIKEPV
Ga0208365_10087982	3300027070	Forest Soil	MPAREYEDFLKNARTEIMGDPEAVRLMRATHVEEPV
Ga0208092_1026131	3300027074	Forest Soil	LMIEVVSPEMAREYEDFLKNARTEIMGDPEAVRLMRATHVKEPV
Ga0308309_117468841	3300028906	Soil	MIEVAPPDMAQEYEDFLKTAATSMRNDPEALRLMRATHIKEPA
Ga0308190_11258533	3300030993	Soil	IEIAPPEMAREYQEFLKSARTEVMSDPEAVRLMRATHIKEPA
Ga0308189_103576692	3300031058	Soil	IEIAPPEMAREYQEFLKNARTEVMNDPESVRLMRATHVKEPA
Ga0170824_1269687191	3300031231	Forest Soil	PRRPSAENRLMIEVVSPEMAREYEDFLKNARTEIMGDPEAVRLMRATHVKEPV
Ga0170818_1070574814	3300031474	Forest Soil	RLMIEVVSLEMAREYEVFLKNARTEIMGDPEAVRLMRATHVKEPA
Ga0318534_101595142	3300031544	Soil	IEVVSPAMAREYEDFLKSAQTAMMSDPESLRLMRATHLKEPAQEPA
Ga0318534_105235332	3300031544	Soil	YEGFLKGAQTAMMSDPEALRLMRATHLKEPVKEPA
Ga0318538_105080122	3300031546	Soil	NRLMIEVVSPAMAREYQDFVKNAGTKMRSDPEALRLMRATHIAPAA
Ga0318571_101346272	3300031549	Soil	LMIEVVSPAMAREYEDFLKGAQTAMMSDPESLRLMRATHLKEPVKEPA
Ga0318571_103320182	3300031549	Soil	REYKDFLKNARTEIMGDPEAMRLMRATHVKEPAKE
Ga0318573_101634571	3300031564	Soil	SPVMAREYEDFLKGAQTAMMSDPESLRLMRATHLKEPVKEPA
Ga0318542_101465901	3300031668	Soil	VVSPAMAREYEEFLKGAQTAMMSDPESLRLMRATHLKEPVKEPA
Ga0318542_101663351	3300031668	Soil	ENRLMIEVAPPAMAQEYEDFLKGAQTAMMSDPESLRLMRATHLKEPVTEPA
Ga0318561_103689641	3300031679	Soil	SPAMAREYEDFLKGAQTAMMSDPESLRLMRATHLKKPVKEPA
Ga0318561_105154541	3300031679	Soil	EYEEFLKGAQTAMMSDPESLRLMRATHLKEPVKEPA
Ga0318561_105897022	3300031679	Soil	ENRLMIEVVSPAMAREYEEFLKGAQTAMMSDPESLRLMRATHLNEPVKELA
Ga0318572_100094491	3300031681	Soil	MIEGVSPAMACEYEDFLKNAQLSLMSDPESLRLMRATQIKEPA
Ga0306917_107299862	3300031719	Soil	AMAREYEDFLKSAQTAMMSDPESLRLMRATHLKEPVKEPA
Ga0318500_101481532	3300031724	Soil	SPAMAREYEDFLKGAQPAMMSDPESLRLMRATHLKEPVKEPA
Ga0318501_101175612	3300031736	Soil	REYEDFLKGAQTAMMSDPESLRLMRATHLKKPVKEPA
Ga0306918_100056901	3300031744	Soil	ENRLMIEVASPAMAREYEDFLKGAQTAMMSDPESLRLMRATHLKEPVKEPA
Ga0306918_111077891	3300031744	Soil	LMIEVVSPAMAREYEDFLKSAQTAMMSDPESLRLMRATHLKEPVKEPA
Ga0306918_113588422	3300031744	Soil	MAREYEEFLKGAQTAMMSDPESLRLMRATHLKEPVKELA
Ga0318494_103634242	3300031751	Soil	VVSPAMAREYEDFLKGAQTAMMSDSESLRLMRATHLKKPVKEPA
Ga0318554_102243751	3300031765	Soil	EYEDFLKGAQTAMMSDPEALRLMRATHLKEPVKEPA
Ga0318554_107702411	3300031765	Soil	NRLMIEVVSPAMAREYEDFLKNPQLSVMNDPESLRLMRATHIKELA
Ga0318509_106973762	3300031768	Soil	VASPAMAREYEDFLKGAQTAMMSDPEALRLMRATHLKEPVKEPA
Ga0318546_113251111	3300031771	Soil	NRLMIEIASPEMTAEYENFLKGTRPEVMSDPESVKLMRATHIEEPA
Ga0318543_102186131	3300031777	Soil	REYEEFLKGAQTAMMSDPESLRLMRATHLKEPVKELA
Ga0318508_10089812	3300031780	Soil	MIEVVSPVMAREHEDFLKGAQTAMTSDPESLRLMRATHLKEPVKEPA
Ga0318529_101013283	3300031792	Soil	RLMIEVAPPAMAREYEEFLKGAQTAMMSDPESLRLMRATHLKEPVKEPA
Ga0318529_101843541	3300031792	Soil	EVVSPAMAREYEEFLKGAQTAMMSDPEALRLMRATHLKEPVKEPA
Ga0318557_103809991	3300031795	Soil	IEVASPAMAREYEDFLKGAQTAMMSDPESLRLMRATHLKEPVKEPA
Ga0318523_102791461	3300031798	Soil	IEVVSPAMAREYEEFLKGAQTAMMSDPESLRLMRATHLKEPVKEPA
Ga0318565_101193351	3300031799	Soil	AREYEDFLKGAQTAWMSDPESLRLMRATHLKEPVKEPVKEPA
Ga0318512_101203451	3300031846	Soil	EYEDFLKGAQTAMMSDPESLRLMRATHLKKPVKEPA
Ga0318512_104872031	3300031846	Soil	IEVVSPAMAREYEDFLKNAQLSVMSDPESLRLMRVTHTKEPA
Ga0318495_100790451	3300031860	Soil	REYENFLKDAQTAMMSDPESLRLMRATHLKEPVKEPA
Ga0306919_112234721	3300031879	Soil	EFWLENRLMIEVVSPAMAREYEDFLKNAQLSVMSDPESLRLMRVTHTKEPA
Ga0306925_112155241	3300031890	Soil	LMIEVVSPAMAREYEGFLKTTQLSMMNDPESLRLMRATHAKEPGR
Ga0318522_101502971	3300031894	Soil	VSPAMGREYESFLKDAQTAMMSDPESLRLMRATHLKEPVKEPA
Ga0306923_121045372	3300031910	Soil	IEFWLENRLMIEVVSPAMTREYEDFLKNAQLSVMSDPESLRLMRATHVKEPA
Ga0306921_101505011	3300031912	Soil	IEVVSPAMTREYEDFLKNAQLSVMSDPESLRLMRATHVKEPA
Ga0306921_110777181	3300031912	Soil	REYEEFLKGAQTAMMSDPESLRLMRATHLNEPVKELA
Ga0310909_106950191	3300031947	Soil	MIKVVSPAMAREYEEFLKGAQTAMMSDPESLRLMRATHLKEPVKELA
Ga0318531_100996872	3300031981	Soil	IEVAPPAMAREYEEFLKGAQTAMMSDPESLRLMRATHLKEPVKEPA
Ga0308176_115765492	3300031996	Soil	FWLENRLMIEVVSPTMAREYEDFLKNAQMSVMNDAESLRLMRATHIKERA
Ga0318507_101432933	3300032025	Soil	SPAMAREYEDFLKNPQLSVMNDPESLRLMRATHIKELA
Ga0310911_103483751	3300032035	Soil	LMIEVVSPEMAREYEDFLKNARTEIMGDPEAVRLMRPTHVKEPV
Ga0318570_100448591	3300032054	Soil	MIEVVSPAMAREYENFLKDAQTAMMSDPESLRLMRATHLKEPVKEPA
Ga0318533_102596002	3300032059	Soil	MAREYEDFLKSAQTAMMSDPESLRLMRATHLKEPAQEPA
Ga0306924_100868674	3300032076	Soil	VSPAMTQEYEDFIKNAQLSVMSDPESLRLMRATHVKELA
Ga0306924_117427872	3300032076	Soil	IEVVSPAMAREYEDFLKGAQTAMMSDPESLRLMRATHLKEPVQEPA
Ga0306924_125422262	3300032076	Soil	MIEVVSPAMAREYEDFLKGAQTAMMSDPESLRLMRATHLKEPVKEPA
Ga0318525_103927182	3300032089	Soil	NRLMIEVAPPAMAREYEEFLKGAQTAMMSDPESLRLMRATHLKEPVKEPA
Ga0307471_1016597722	3300032180	Hardwood Forest Soil	ENRLMIEVVSPEMAREYEDFLKNARTEIMGDPEAVRLMRATHVKEPV
Ga0307472_1001373773	3300032205	Hardwood Forest Soil	MAREYEAFLKNARTEIMGDPEAVRLMRATHVKEPV
Ga0335073_103603871	3300033134	Soil	MVQEYQDFLKSVAPATMSDPESLRLMRATHIKEPA
Ga0310914_113125772	3300033289	Soil	WLENRLMIEVVSPAMAREYQDFVKNAGTKMRSDPEALRLMRATHIAPAA
Ga0318519_105804271	3300033290	Soil	YEDFLKGAQTAMMSDPESLRLMRATHLKEPVQEPA
Ga0314782_146467_439_570	3300034661	Soil	MIEIAPPEMVREYQEFLKNSRTEVMSDPESVRLMRATHIKESA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F041365

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences