Metagenome / Metatranscriptome Family F041613

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F041613
Family Type	Metagenome / Metatranscriptome
Number of Sequences	159
Average Sequence Length	51 residues
Representative Sequence	MTSNDNQIDEVELARLGIRRVERHVYQRGEYIYSNLGDAIAAAKREQKR
Number of Associated Samples	99
Number of Associated Scaffolds	159

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	75.47 %
% of genes near scaffold ends (potentially truncated)	19.50 %
% of genes from short scaffolds (< 2000 bps)	84.91 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (85.535 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere (20.755 % of family members)
Environment Ontology (ENVO)	Unclassified (55.346 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (67.925 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 24.68% β-sheet: 15.58% Coil/Unstructured: 59.74%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.61
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.61
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 159 Family Scaffolds
PF02627	CMD	5.03
PF09966	DUF2200	2.52
PF05901	Excalibur	1.89
PF10067	DUF2306	1.89
PF00268	Ribonuc_red_sm	1.89
PF14534	DUF4440	1.89
PF00565	SNase	1.89
PF01329	Pterin_4a	1.26
PF13545	HTH_Crp_2	1.26
PF14696	Glyoxalase_5	1.26
PF00313	CSD	1.26
PF09190	DALR_2	0.63
PF02588	YitT_membrane	0.63
PF03544	TonB_C	0.63
PF07238	PilZ	0.63
PF04191	PEMT	0.63
PF00004	AAA	0.63
PF01176	eIF-1a	0.63
PF00411	Ribosomal_S11	0.63
PF13531	SBP_bac_11	0.63
PF02643	DUF192	0.63
PF04402	SIMPL	0.63

COG ID	Name	Functional Category	% Frequency in 159 Family Scaffolds
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	5.03
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	5.03
COG0208	Ribonucleotide reductase beta subunit, ferritin-like domain	Nucleotide transport and metabolism [F]	1.89
COG2154	Pterin-4a-carbinolamine dehydratase	Coenzyme transport and metabolism [H]	1.26
COG0100	Ribosomal protein S11	Translation, ribosomal structure and biogenesis [J]	0.63
COG0215	Cysteinyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.63
COG0361	Translation initiation factor IF-1	Translation, ribosomal structure and biogenesis [J]	0.63
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.63
COG1284	Uncharacterized membrane-anchored protein YitT, contains DUF161 and DUF2179 domains	Function unknown [S]	0.63
COG1430	Uncharacterized conserved membrane protein, UPF0127 family	Function unknown [S]	0.63
COG2364	Uncharacterized membrane protein YczE	Function unknown [S]	0.63
COG2859	Outer membrane channel-forming protein BP26/OMP28, SIMPL family	Cell wall/membrane/envelope biogenesis [M]	0.63
COG2968	Uncharacterized conserved protein YggE, contains kinase-interacting SIMPL domain	Function unknown [S]	0.63
COG3471	Predicted secreted (periplasmic) protein	Function unknown [S]	0.63

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	85.53 %
Unclassified	root	N/A	14.47 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	85.53 %
Unclassified	root	N/A	14.47 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	85.53 %
Unclassified	root	N/A	14.47 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	79.87 %
Unclassified	root	N/A	14.47 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	79.25 %
Unclassified	root	N/A	14.47 %

Name	Rank	Taxonomy	Distribution
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	74.21 %
Unclassified	root	N/A	14.47 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.63 %

Name	Rank	Taxonomy	Distribution
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	73.58 %
Unclassified	root	N/A	14.47 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.63 %

Name	Rank	Taxonomy	Distribution
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	67.30 %
Unclassified	root	N/A	14.47 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.47 %
unclassified Sphingomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas	6.92 %
Sphingomonas jaspsi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas jaspsi	3.14 %
Sphingomonas segetis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis	2.52 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.47 %
Sphingomonas sp. URHD0007	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	4.40 %
Sphingomonas jaspsi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas jaspsi	3.14 %
Sphingomonas segetis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis	2.52 %
Sphingomonas sp. URHD0057	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057	1.89 %
Sphingomonas sp. HDW15A	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. HDW15A	0.63 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.63 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2001200001\|2001327106	Not Available	1308	Open in IMG/M
2170459021\|G14TP7Y01DSYOU	Not Available	627	Open in IMG/M
3300003320\|rootH2_10339340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1515	Open in IMG/M
3300004114\|Ga0062593_100043993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2711	Open in IMG/M
3300004114\|Ga0062593_100639941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057	1023	Open in IMG/M
3300004114\|Ga0062593_102003451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	643	Open in IMG/M
3300004463\|Ga0063356_101000298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1193	Open in IMG/M
3300004463\|Ga0063356_101664273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	953	Open in IMG/M
3300004463\|Ga0063356_105010259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	569	Open in IMG/M
3300004480\|Ga0062592_100620377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	923	Open in IMG/M
3300005093\|Ga0062594_100934514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas jaspsi	824	Open in IMG/M
3300005093\|Ga0062594_101526789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	687	Open in IMG/M
3300005093\|Ga0062594_102499805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	567	Open in IMG/M
3300005163\|Ga0066823_10017202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1088	Open in IMG/M
3300005165\|Ga0066869_10002180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2231	Open in IMG/M
3300005327\|Ga0070658_10157115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1907	Open in IMG/M
3300005327\|Ga0070658_10223639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1593	Open in IMG/M
3300005327\|Ga0070658_10488813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1062	Open in IMG/M
3300005327\|Ga0070658_10537602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1011	Open in IMG/M
3300005327\|Ga0070658_11419118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas jaspsi	602	Open in IMG/M
3300005327\|Ga0070658_11624343	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	560	Open in IMG/M
3300005327\|Ga0070658_11968243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	504	Open in IMG/M
3300005328\|Ga0070676_11201392	All Organisms → cellular organisms → Bacteria → Proteobacteria	576	Open in IMG/M
3300005330\|Ga0070690_100272703	All Organisms → cellular organisms → Bacteria	1204	Open in IMG/M
3300005331\|Ga0070670_101740958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	574	Open in IMG/M
3300005336\|Ga0070680_100447234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1103	Open in IMG/M
3300005339\|Ga0070660_100173459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1742	Open in IMG/M
3300005339\|Ga0070660_101316153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	613	Open in IMG/M
3300005344\|Ga0070661_100337948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1179	Open in IMG/M
3300005344\|Ga0070661_101316508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	606	Open in IMG/M
3300005345\|Ga0070692_10099863	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1589	Open in IMG/M
3300005347\|Ga0070668_100750708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	864	Open in IMG/M
3300005364\|Ga0070673_100557449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1042	Open in IMG/M
3300005366\|Ga0070659_100153874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1877	Open in IMG/M
3300005366\|Ga0070659_100321769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1293	Open in IMG/M
3300005366\|Ga0070659_100528264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1008	Open in IMG/M
3300005366\|Ga0070659_100603282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	944	Open in IMG/M
3300005366\|Ga0070659_100830811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	804	Open in IMG/M
3300005435\|Ga0070714_100817720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	903	Open in IMG/M
3300005435\|Ga0070714_101986449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas jaspsi	567	Open in IMG/M
3300005455\|Ga0070663_100361648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1177	Open in IMG/M
3300005455\|Ga0070663_101043209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	712	Open in IMG/M
3300005456\|Ga0070678_101139675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	721	Open in IMG/M
3300005457\|Ga0070662_100114378	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2060	Open in IMG/M
3300005458\|Ga0070681_10149018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas jaspsi	2267	Open in IMG/M
3300005530\|Ga0070679_100490046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1173	Open in IMG/M
3300005530\|Ga0070679_100636434	Not Available	1009	Open in IMG/M
3300005530\|Ga0070679_100873084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	843	Open in IMG/M
3300005539\|Ga0068853_102076439	Not Available	551	Open in IMG/M
3300005543\|Ga0070672_101665556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	573	Open in IMG/M
3300005543\|Ga0070672_102086903	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	511	Open in IMG/M
3300005548\|Ga0070665_100040881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	4660	Open in IMG/M
3300005548\|Ga0070665_102321176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	539	Open in IMG/M
3300005564\|Ga0070664_101719067	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	595	Open in IMG/M
3300005577\|Ga0068857_100215665	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	1752	Open in IMG/M
3300005578\|Ga0068854_100012745	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	5505	Open in IMG/M
3300005578\|Ga0068854_101065287	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	719	Open in IMG/M
3300005578\|Ga0068854_101546247	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	603	Open in IMG/M
3300005614\|Ga0068856_100032271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas jaspsi	5126	Open in IMG/M
3300006954\|Ga0079219_11413414	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	623	Open in IMG/M
3300009093\|Ga0105240_10086114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3848	Open in IMG/M
3300009093\|Ga0105240_10980699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	905	Open in IMG/M
3300010147\|Ga0126319_1275622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	610	Open in IMG/M
3300010152\|Ga0126318_10175065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	657	Open in IMG/M
3300010152\|Ga0126318_11125539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	714	Open in IMG/M
3300010399\|Ga0134127_10452214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1284	Open in IMG/M
3300010400\|Ga0134122_10138391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057	1968	Open in IMG/M
3300012212\|Ga0150985_104204372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1025	Open in IMG/M
3300012212\|Ga0150985_111170974	Not Available	588	Open in IMG/M
3300012212\|Ga0150985_116645682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	619	Open in IMG/M
3300012469\|Ga0150984_121698523	Not Available	1493	Open in IMG/M
3300012512\|Ga0157327_1007980	All Organisms → cellular organisms → Bacteria	938	Open in IMG/M
3300012958\|Ga0164299_11609832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	512	Open in IMG/M
3300013100\|Ga0157373_10036535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3525	Open in IMG/M
3300013100\|Ga0157373_10137277	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1720	Open in IMG/M
3300013100\|Ga0157373_11085758	Not Available	600	Open in IMG/M
3300013102\|Ga0157371_10084878	All Organisms → cellular organisms → Bacteria	2243	Open in IMG/M
3300013104\|Ga0157370_11166095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	695	Open in IMG/M
3300013105\|Ga0157369_10000256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	73068	Open in IMG/M
3300013105\|Ga0157369_10000343	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	61648	Open in IMG/M
3300013105\|Ga0157369_10425883	Not Available	1376	Open in IMG/M
3300013105\|Ga0157369_10579209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1159	Open in IMG/M
3300013105\|Ga0157369_11493517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	687	Open in IMG/M
3300014968\|Ga0157379_10597801	Not Available	1030	Open in IMG/M
3300015371\|Ga0132258_10920583	All Organisms → cellular organisms → Bacteria	2207	Open in IMG/M
3300015374\|Ga0132255_100330585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	2201	Open in IMG/M
3300015374\|Ga0132255_101550072	All Organisms → cellular organisms → Bacteria	1003	Open in IMG/M
3300015374\|Ga0132255_103576593	Not Available	661	Open in IMG/M
3300019361\|Ga0173482_10607159	Not Available	551	Open in IMG/M
3300020069\|Ga0197907_11499487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	678	Open in IMG/M
3300020082\|Ga0206353_10079487	Not Available	625	Open in IMG/M
3300020082\|Ga0206353_10289942	Not Available	601	Open in IMG/M
3300022883\|Ga0247786_1066843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	745	Open in IMG/M
3300025315\|Ga0207697_10436561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	581	Open in IMG/M
3300025904\|Ga0207647_10175122	Not Available	1248	Open in IMG/M
3300025904\|Ga0207647_10249093	Not Available	1019	Open in IMG/M
3300025907\|Ga0207645_11042006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	553	Open in IMG/M
3300025909\|Ga0207705_10033622	All Organisms → cellular organisms → Bacteria	3664	Open in IMG/M
3300025909\|Ga0207705_10168497	All Organisms → cellular organisms → Bacteria	1648	Open in IMG/M
3300025909\|Ga0207705_10286623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1261	Open in IMG/M
3300025909\|Ga0207705_11282990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	560	Open in IMG/M
3300025911\|Ga0207654_11331019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	524	Open in IMG/M
3300025912\|Ga0207707_10291841	Not Available	1411	Open in IMG/M
3300025912\|Ga0207707_11644919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	504	Open in IMG/M
3300025913\|Ga0207695_10062772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	3833	Open in IMG/M
3300025917\|Ga0207660_10625554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	877	Open in IMG/M
3300025920\|Ga0207649_10440398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis	982	Open in IMG/M
3300025920\|Ga0207649_10537856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	892	Open in IMG/M
3300025920\|Ga0207649_10863966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	708	Open in IMG/M
3300025921\|Ga0207652_10776881	Not Available	851	Open in IMG/M
3300025921\|Ga0207652_10856509	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	805	Open in IMG/M
3300025923\|Ga0207681_10544014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	955	Open in IMG/M
3300025925\|Ga0207650_10046882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057	3184	Open in IMG/M
3300025925\|Ga0207650_10078782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2494	Open in IMG/M
3300025932\|Ga0207690_10261078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis	1342	Open in IMG/M
3300025932\|Ga0207690_10394335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1103	Open in IMG/M
3300025932\|Ga0207690_10589688	Not Available	906	Open in IMG/M
3300025932\|Ga0207690_10628120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	879	Open in IMG/M
3300025937\|Ga0207669_10424888	Not Available	1047	Open in IMG/M
3300025937\|Ga0207669_10855094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	757	Open in IMG/M
3300025940\|Ga0207691_10650807	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. HDW15A	890	Open in IMG/M
3300025941\|Ga0207711_10802759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis	876	Open in IMG/M
3300025945\|Ga0207679_10365159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1262	Open in IMG/M
3300025949\|Ga0207667_10169312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2245	Open in IMG/M
3300025981\|Ga0207640_10771189	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis	831	Open in IMG/M
3300026041\|Ga0207639_11480591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	637	Open in IMG/M
3300026067\|Ga0207678_10059153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	3297	Open in IMG/M
3300026078\|Ga0207702_10014519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	6538	Open in IMG/M
3300027288\|Ga0208525_1010208	Not Available	1024	Open in IMG/M
3300028379\|Ga0268266_10172286	All Organisms → cellular organisms → Bacteria	1965	Open in IMG/M
3300028608\|Ga0247819_10688303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	624	Open in IMG/M
3300028889\|Ga0247827_10113726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1380	Open in IMG/M
3300030336\|Ga0247826_11610962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	529	Open in IMG/M
3300031538\|Ga0310888_10430441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	779	Open in IMG/M
3300031538\|Ga0310888_10539212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	702	Open in IMG/M
3300031562\|Ga0310886_10028812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	2319	Open in IMG/M
3300031731\|Ga0307405_10405740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1068	Open in IMG/M
3300031852\|Ga0307410_10616024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	907	Open in IMG/M
3300031858\|Ga0310892_10053673	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2013	Open in IMG/M
3300031892\|Ga0310893_10242695	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	743	Open in IMG/M
3300031901\|Ga0307406_11299535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	635	Open in IMG/M
3300031938\|Ga0308175_100083749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2884	Open in IMG/M
3300031938\|Ga0308175_100420022	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1402	Open in IMG/M
3300031938\|Ga0308175_100573690	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1210	Open in IMG/M
3300031938\|Ga0308175_100964912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	941	Open in IMG/M
3300031938\|Ga0308175_101948225	Not Available	658	Open in IMG/M
3300031939\|Ga0308174_10272000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1324	Open in IMG/M
3300031996\|Ga0308176_10820659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	973	Open in IMG/M
3300031996\|Ga0308176_12915091	Not Available	507	Open in IMG/M
3300032002\|Ga0307416_102367667	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300032002\|Ga0307416_102882798	Not Available	575	Open in IMG/M
3300032003\|Ga0310897_10650857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	525	Open in IMG/M
3300032004\|Ga0307414_12200940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	515	Open in IMG/M
3300032012\|Ga0310902_10229219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1107	Open in IMG/M
3300032013\|Ga0310906_10606299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	755	Open in IMG/M
3300032017\|Ga0310899_10691721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	517	Open in IMG/M
3300032074\|Ga0308173_10892385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	822	Open in IMG/M
3300032075\|Ga0310890_10434740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	983	Open in IMG/M
3300032075\|Ga0310890_11070899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	651	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	61.64%
Environmental	Environmental	37.74%
Engineered	Engineered	0.63%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	61.64%
Terrestrial	Environmental → Terrestrial	35.85%
Aquatic	Environmental → Aquatic	1.89%
Solid Waste	Engineered → Solid Waste	0.63%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	45.28%
Soil	Environmental → Terrestrial → Soil	35.85%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.72%
Freshwater	Environmental → Aquatic → Freshwater	1.89%
Rhizome	Host-Associated → Plants → Rhizome	0.63%
Grass	Engineered → Solid Waste → Grass	0.63%

Habitat	Taxonomy	Distribution
Soil	Host-Associated → Plants → Rhizosphere → Soil	31.45%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	27.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.84%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.69%
Loam	Environmental → Terrestrial → Soil → Loam	8.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.40%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.89%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.63%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified	0.63%
Composting	Engineered → Solid Waste → Grass → Composting	0.63%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	31.45%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	14.47%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.69%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.80%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	6.29%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.29%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.40%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.63%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified → Unclassified	0.63%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.63%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	20.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	14.47%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	7.55%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	6.29%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	6.29%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.03%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	4.40%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	3.77%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.52%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.52%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.89%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.89%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.26%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.26%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.63%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.63%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.63%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.63%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.63%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.63%
Sugarcane Root And Bulk Soil	Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil	0.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.63%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.63%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.63%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2001200001	Soil microbial communities from Waseca County, Minnesota, USA - Sample 10150	Environmental	Open in IMG/M
2170459021	Litter degradation NP4	Engineered	Open in IMG/M
3300003320	Sugarcane root Sample H2	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010152	Soil microbial communities from Oklahoma, USA to study soil gas exchange rates - GP-OK-ARM metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012512	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.3.old.270510	Host-Associated	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S066-202C-4	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027288	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2001385030	2001200001	Soil	MYGNDNHIDEVELKRLGIRRVEKDLFQRGEYLYPSLHEAIAAAKKDEKA
4NP_01012030	2170459021	Switchgrass, Maize And Mischanthus Litter	MGTNDNRIDEMELARLGIRPVEGQVFQWGEYIFSNLHDALVAARRAEKR
rootH2_103393401	3300003320	Sugarcane Root And Bulk Soil	MMPEAVKGNSMNEKDSQMDDVELERLGIRRVEREVYQRGEYVYSNLRDAIAAARREMKL*
Ga0062593_1000439935	3300004114	Soil	MTSNDNQIDEVELARLGIRRVEAHVFQRGEYIYSNLRDAVAAAKREQRP*
Ga0062593_1006399411	3300004114	Soil	MTDNDNQIDEVELARLGIRRVERDVFQRGEYIYSNLRDAIAAAKREERP*
Ga0062593_1020034512	3300004114	Soil	MTSNDNQIDEMELARLGIRRVEKHVFQWGEYIYSNLSDALAAAKRGVKS*
Ga0063356_1010002983	3300004463	Arabidopsis Thaliana Rhizosphere	MTSNDNQIDEVELARLGIRRVERDVFQWGEYIYSNLRDAVAAAKREEAK*
Ga0063356_1016642733	3300004463	Arabidopsis Thaliana Rhizosphere	MTSNDNQIDEVELARLGIRRVEPHVFQWGEYLYSNVGDAIAAARRGKKR*
Ga0063356_1050102592	3300004463	Arabidopsis Thaliana Rhizosphere	MTSNDNQIDEVELARLGIRRVEKHVFQRGEYIYSNLNDALAAAKRDERA*
Ga0062592_1006203773	3300004480	Soil	MPKNDDHIDDAELTRLGIRRVERHVFQRGEYIYSNLGDALAAAKREGKA*
Ga0062594_1009345143	3300005093	Soil	MGTNDNRIDALELARLGIRPVEGQVFQWGEYIFSNLHDALAAARRAEKR*
Ga0062594_1015267892	3300005093	Soil	MTSNHNQIDDAELARLGIRRVETQVFQVGEYIYSNLSDALASAKRRDRK*
Ga0062594_1024998053	3300005093	Soil	MPKNDDHIDDAELTRLGIRRVERHVFQRGEYIYSNLGDALAA
Ga0066823_100172024	3300005163	Soil	LTHPNSVKDDYVTAKENRIDDAELARLGIRRVESQVFQVGEYVYSNLSDALASAKRRDSK
Ga0066869_100021806	3300005165	Soil	VTAKENRIDDAELARLGIRRVESQVFQVGEYVYSNLSDALASAKRRDSK*
Ga0070658_101571151	3300005327	Corn Rhizosphere	MTHNDNQIDDAELARLGIRRVEREVYQWGEYIYGNLADALAAARREAKA*
Ga0070658_102236395	3300005327	Corn Rhizosphere	MTDNDNHMDDAELAKLGIRRVERQVYQRGEYVYSNLADALAAARRPVKS*
Ga0070658_104888133	3300005327	Corn Rhizosphere	MTPEPSRGNSMNENDNRIDDSELERLGIRRVEREVYQRGEYIYSNLRDALAAANREMKS*
Ga0070658_105376023	3300005327	Corn Rhizosphere	MTSNDNQIDEVELARLGIRRVERHVFQRGEYVYSNLTDAIAAAKREEKQ*
Ga0070658_114191182	3300005327	Corn Rhizosphere	MMPEPSQGNSMNENDNRIDDSELERLGIRRVEREVYQRGEYIYSNLRDALAAANREMKS*
Ga0070658_116243432	3300005327	Corn Rhizosphere	MNHTDIKVDDAELTKLGIRRVERQVYQWGEYVYSNLGDALAAARRPAKS*
Ga0070658_119682432	3300005327	Corn Rhizosphere	MMPEPTQGKSMNENDNRIDDSELKRLGIRRVEREVYQRGEYIYSNLRDALAAANREMKS*
Ga0070676_112013922	3300005328	Miscanthus Rhizosphere	MPASKNQIDDAELDRLGIRRVEAQVFQVGEYVYSNLSDALASAKRRDRK*
Ga0070690_1002727033	3300005330	Switchgrass Rhizosphere	SKRMPMTSNHNQIDDAELARLGIRRVETQVFQVGEYIYSNLSDALASAKRRDRK*
Ga0070670_1017409582	3300005331	Switchgrass Rhizosphere	MTSNSNQVDEVELARLGIRRVERSVFQRGEYVYSNLKDAIDAAKRDARS*
Ga0070680_1004472342	3300005336	Corn Rhizosphere	MASNDDEIDEAELARLGIRRVEGKVYQRGEYIFSNVRDAIAAAKREGNT*
Ga0070660_1001734594	3300005339	Corn Rhizosphere	MNENDNRIDDSELERLGIRRVEREVYQRGEYIYSNLRDALAAANREMKS*
Ga0070660_1013161531	3300005339	Corn Rhizosphere	NQIDEVELARLGIRRVEAHVFQRGEYIYSNLRDAVAAAKREQRP*
Ga0070661_1003379483	3300005344	Corn Rhizosphere	MTGNDNHIDEVELARLGIRRVERHVYQRGEYIYSNLGDAIAAAKREQKR*
Ga0070661_1013165082	3300005344	Corn Rhizosphere	MTSTDNQIDDAELARLGIRRVETQVFQVGEYIYSNLSDALASAKRRDRK*
Ga0070692_100998633	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MTNNDNDIDEVELARLGIRRMERHVFQVGEYIYSNLRDAIAAAERAQKS*
Ga0070668_1007507082	3300005347	Switchgrass Rhizosphere	VTAKENQIEDSELARLGIRRVESQVFQVGEYVYSNLSDALASAKRRDRK*
Ga0070673_1005574494	3300005364	Switchgrass Rhizosphere	MTSSDNKIDDAELARLGIRRVESQVFQVGEYVYSNLSDALASARRRDRK*
Ga0070659_1001538743	3300005366	Corn Rhizosphere	MPGGWIRSACPVEKHQGTSMTENDTQMNDADLERLGIRRIERYVFQRGEYIYSNLRDAIAAAKRDGKS*
Ga0070659_1003217693	3300005366	Corn Rhizosphere	MTNNDNDIDEVELARLGIRRMERHVFQVGEYIYSNLRDAIADAERAQKS*
Ga0070659_1005282642	3300005366	Corn Rhizosphere	MTNNDNDIDDVELARLGIRRVEQHVFQFGEYIYSNLGDAIAAAKRAQKA*
Ga0070659_1006032823	3300005366	Corn Rhizosphere	MTSNENQIDEAELTRLGIRRVERHVFQWREYIYSNLGDAIAAAKREEKR*
Ga0070659_1008308113	3300005366	Corn Rhizosphere	MNNTNDNQIDEMELARLGIRRVEKHVFQWGEYIYSNLSDALAAAKRGVKP*
Ga0070714_1008177202	3300005435	Agricultural Soil	MTGTDHQMNDTELAKLGIRRVERQVYQWGEYVYSNLGDALAAARRPAKS*
Ga0070714_1019864491	3300005435	Agricultural Soil	MTSDDNKIDDSELTRLGIRRVEREVYQRGEYIYSNLRDAVAAARRDDKR*
Ga0070663_1003616483	3300005455	Corn Rhizosphere	MSENDNPVDDSELERLGIRRVEREVYQRGEYIYSNLRDALAAANREMKS*
Ga0070663_1010432093	3300005455	Corn Rhizosphere	MTSEPNQGKSMSENDNPVDDSELERLGIRRVEREVYQRGEYIYSNLRDALAAANREMKS*
Ga0070678_1011396752	3300005456	Miscanthus Rhizosphere	MTSNDNQIDEVELARLGIRRVEAHVFQRGEYIHSNLRDAVAAAKREQRP*
Ga0070662_1001143785	3300005457	Corn Rhizosphere	VTQSPPNEERVMPKNDDHIDDAELTRLGIRRVERHVFQRGEYIYSNLGDALAAAKREGKA
Ga0070681_101490185	3300005458	Corn Rhizosphere	MKTNDNHIDELELARLGIRAVEGQVFQWGEYIFSNLRDAVAAAKAAEKR*
Ga0070679_1004900462	3300005530	Corn Rhizosphere	MTGNNHQIDEAELTRLGIRRVERHVYQRGEYVYSNLGDAIAAAKREEKA*
Ga0070679_1006364341	3300005530	Corn Rhizosphere	SNDDEIDEAELARLGIRRVEGKVYQRGEYIFSNVRDAIAAAKREGNT*
Ga0070679_1008730842	3300005530	Corn Rhizosphere	MSSNDNEIDQVELARLGIRRVERHVFQWGEYIYSNLSDALAAAKRGEKS*
Ga0068853_1020764392	3300005539	Corn Rhizosphere	MADNDKKIDETELARLGIRRVERQVFQRGEYIYGSLDDALAAAKRDEPA*
Ga0070672_1016655562	3300005543	Miscanthus Rhizosphere	PMTSNHNQIDDAELARLGIRRVETQVFQVGEYIYSNLSDALASAKRRDRK*
Ga0070672_1020869032	3300005543	Miscanthus Rhizosphere	MTSNDNQIDEVELARLGIRRVEGQVFQWGEYVYSNVGDAIAAAKRGVKK*
Ga0070665_1000408817	3300005548	Switchgrass Rhizosphere	MTSNDNEIDEVELARLGIKRVERAVFQFGDYTYTNARDAVAAAKRGQAS*
Ga0070665_1023211762	3300005548	Switchgrass Rhizosphere	MTSTNDNQIDELELARLGIRRVEGNVFQWGEYIYSNVRDAIAAAKRGERP*
Ga0070664_1017190671	3300005564	Corn Rhizosphere	MTSNHNQIDDTELARLGIRRVERHVFQRGEYIYSNLGDAVAAARREQKA*
Ga0068857_1002156654	3300005577	Corn Rhizosphere	MTSNENQIDEAELTRLGIRRVERHVFQWREYIYSNLSDAIAAAKREEKR*
Ga0068854_1000127455	3300005578	Corn Rhizosphere	MNENDNRIDDSELERLGIRRVEREVYQQGEYIYSNLRDALAAANLEMKS*
Ga0068854_1010652871	3300005578	Corn Rhizosphere	NSMNENDNRIDDSELERLGIRRVEREVYQRGEYIYSNLRDALAAANREMKS*
Ga0068854_1015462472	3300005578	Corn Rhizosphere	MTSNDNQIDEVELARLGIRRVERHVYQRGEYIYSNLGDAIAAAKREQKR*
Ga0068856_1000322712	3300005614	Corn Rhizosphere	MSENDNKVDDSELERLGIRRVEREVYQRGEYIYSNLRDALAAANREMKS*
Ga0079219_114134141	3300006954	Agricultural Soil	MTTTNDNQIDEAELTRLGIRRVERHVFQWREYIYSNLSDAIAAA
Ga0105240_100861145	3300009093	Corn Rhizosphere	MTPEPSQGNSMNENDNRIDDSELERLGIRRVEREVYQQGEYIYSNLRDALAAANLEMKS*
Ga0105240_109806992	3300009093	Corn Rhizosphere	MTPEPNQGKSMSENDNPVDDSELERLGIRRVEREVYQRGEYIYSNLRDALAAANREMKS*
Ga0126319_12756222	3300010147	Soil	LTHPNSVKDDYVTTKENRIDDAELARLGIRRVESQVFQVGEYVYSNLSDALASAKRRDSK
Ga0126318_101750652	3300010152	Soil	MTSDDNKIDDSELTRLGIRRVEREVYQRGEYIYSNLRDAVAAARRDEKR*
Ga0126318_111255392	3300010152	Soil	MNENDNRIDDSELERLGIRRVEREVYQRGEYIYSNLRDALAAAKREAKS*
Ga0134127_104522143	3300010399	Terrestrial Soil	MTTTKDNQIDEAELARLGIRRVEKHVFQRGEYIYSNLGDAIAAAKRDEKR*
Ga0134122_101383913	3300010400	Terrestrial Soil	MTTNDNDIDEMELTRLGIRRVEKHVFQWGEYIYSNVRDAVAAAKRGERP*
Ga0150985_1042043723	3300012212	Avena Fatua Rhizosphere	MNNTNDNQIDETELARLGIRRVEKHVFQWGEYIYSNLSDALAAAKRGVKS*
Ga0150985_1111709742	3300012212	Avena Fatua Rhizosphere	MSSNDNQIDEVELARLGIRHVEEHVFQRGEYIYSSLREAIAAAKRDEKK*
Ga0150985_1166456822	3300012212	Avena Fatua Rhizosphere	MTTNDNQIDDAELARLGIRRVEAQVFQVGEYIYSNLRDARAAAKRAERR*
Ga0150984_1216985234	3300012469	Avena Fatua Rhizosphere	MSKSDPNQEEHMSNNDNQIDELELARLGIRRVERHVFQRGDYIYSNLGDALAAAKRDEKS
Ga0157327_10079803	3300012512	Arabidopsis Rhizosphere	MPKNDEQIDDAELTRLGIRRVDRHVFQRGEYIYSNLGDALAAAKREGKA*
Ga0164299_116098322	3300012958	Soil	VTAKENRIDDAELARLGIRRVETQVFQVGEYIYSNLSDAVASAKRRDSR*
Ga0157373_100365359	3300013100	Corn Rhizosphere	MTSEPNQGNSMNQNDNQIDDSELERLGIRRVEREVYQRGEYIYSNLRDALAAARREVKS*
Ga0157373_101372772	3300013100	Corn Rhizosphere	MASNEDEIDEAELARLGIRRVEGKVYQRGEYIFSNVRDAIAAAKREGNT*
Ga0157373_110857583	3300013100	Corn Rhizosphere	MTPEPSRGNSMNENDNRIDDSELERLGIRRVEREVYQRGEYIYSNLRDALAAAN
Ga0157371_100848785	3300013102	Corn Rhizosphere	MTPEPNQGKRMNENDNKVDDSELERLGIRRVEREVYQRGEYIYSNLRDALAAANREMKS*
Ga0157370_111660953	3300013104	Corn Rhizosphere	RSHERAPMMPEPSQGNSMNENDNRIDDSELERLGIRRVEREVYQRGEYIYSNLRDALAAANREMKS*
Ga0157369_100002566	3300013105	Corn Rhizosphere	VKLPVQGNSMNENDNRIDDSELERLGIRRVEREVYQRGEYIYSNLRDALAAANREMKS*
Ga0157369_1000034329	3300013105	Corn Rhizosphere	MTRKPDQGNTMHENDNQIDEVELSRLGIRRVERHVFQRGEYIYSNLRDALAAAKREVKP*
Ga0157369_104258834	3300013105	Corn Rhizosphere	MTATDHQMNDTELAKLGIRRVERQVYQWGEYVYSNLGDALAAARRPAKS*
Ga0157369_105792094	3300013105	Corn Rhizosphere	MTPEPNQGKSMSENDNKVDDSELERLGIRRVEREVYQRGEYIYSNLRDALAAANREMKS*
Ga0157369_114935171	3300013105	Corn Rhizosphere	NENQIDEAELTRLGIRRVERHVFQWREYIYSNLGDAIAAAKREEKR*
Ga0157379_105978013	3300014968	Switchgrass Rhizosphere	MTSNHNQIDDAELARLGIRRVETQVFQVGEYVYSNLSDALASARRRDRK*
Ga0132258_109205833	3300015371	Arabidopsis Rhizosphere	MSNNDNQVDELELARLGIRRVERQVFQRGEYIYSNLSDAISAAKRDERS*
Ga0132255_1003305851	3300015374	Arabidopsis Rhizosphere	NDDQIDDAELARLGIRRVEGKVYQRGEYIFSNVRDAIAAAKREGNT*
Ga0132255_1015500723	3300015374	Arabidopsis Rhizosphere	MPKNDDHIDDAELTRLGIRRVERHVFQRGEYIYSNLGDAVAAAKREDKA*
Ga0132255_1035765931	3300015374	Arabidopsis Rhizosphere	EGPSMGTNDNRIDALELARLGIRPVEGQVFQWGEYIFSNLHDALAAARRAEKR*
Ga0173482_106071593	3300019361	Soil	MTSNDNQIDEMELARLGIRRVEKHVFQWGEYIYSNLSDALAAAKRGVKS
Ga0197907_114994873	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	MNENDNRIDDSELERLGIRRVEREVYQRGEYIYSNLRDALAAANREMKS
Ga0206353_100794872	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	MNENDNRIDDSELERLGIRRVEREVYQRGEYIYSNLRDALAAANLEMKS
Ga0206353_102899421	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	MNENDNRIDDSELERLGIRRVEREVYQRGEYIYSNLRDALAAANR
Ga0247786_10668432	3300022883	Soil	MTSNDNQIDEVELARLGIRRVEAHVFQRGEYIYSNLRDAVAAAKREQRP
Ga0207697_104365612	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MTSNHNQIDDAELARLGIRRVETQVFQVGEYIYSNLSDALASAKRRDRK
Ga0207647_101751222	3300025904	Corn Rhizosphere	MTNNDNDIDEVELARLGIRRMERHVFQVGEYIYSNLRDAIAAAERAQKS
Ga0207647_102490931	3300025904	Corn Rhizosphere	MTGTDHQMNDTELAKLGIRRVERQVYQWGEYVYSNLGDALAA
Ga0207645_110420061	3300025907	Miscanthus Rhizosphere	GSNMTSNDNQIDEVELARLGIRRVEGQVFQWGEYVYSNVGDAIAAAKRGVKK
Ga0207705_100336225	3300025909	Corn Rhizosphere	LTGVRFTKRCIMTNNDNDIDEVELARLGIRRMERHVFQVGEYIYSNLRDAIAAAERAQKS
Ga0207705_101684972	3300025909	Corn Rhizosphere	MTGTDHQMNDTELAKLGIRRVERQVYQWGEYVYSNLGDALAAARRPAKS
Ga0207705_102866233	3300025909	Corn Rhizosphere	MTSNDNQIDEVELARLGIRRVERHVFQRGEYVYSNLTDAIAAAKREEKQ
Ga0207705_112829902	3300025909	Corn Rhizosphere	MNHTDIKVDDAELTKLGIRRVERQVYQWGEYVYSNLGDALAAARRPAKS
Ga0207654_113310192	3300025911	Corn Rhizosphere	MMPEPSQGNSMNENDNRIDDSELERLGIRRVEREVYQRGEYIYSNLRDALAAANREMKS
Ga0207707_102918414	3300025912	Corn Rhizosphere	MKTNDNHIDELELARLGIRAVEGQVFQWGEYIFSNLRDAVAAAKAAEKR
Ga0207707_116449191	3300025912	Corn Rhizosphere	SNDNQIDEMELARLGIRRVEKHVFQWGEYIYSNLSDALAAAKRGVKP
Ga0207695_100627724	3300025913	Corn Rhizosphere	MNENDNRIDDSELERLGIRRVEREVYQQGEYIYSNLRDALAAANLEMKS
Ga0207660_106255542	3300025917	Corn Rhizosphere	MASNDDEIDEAELARLGIRRVEGKVYQRGEYIFSNVRDAIAAAKREGNT
Ga0207649_104403983	3300025920	Corn Rhizosphere	MTGNDNHIDEVELARLGIRRVERHVYQRGEYIYSNLGDAIAAAKREQKR
Ga0207649_105378562	3300025920	Corn Rhizosphere	MTSNHNQIDDTELARLGIRRVERHVFQRGEYIYSNLGDAVAAARREQKA
Ga0207649_108639662	3300025920	Corn Rhizosphere	MTSNENQIDEVELTRLGIRRVERHVFQRGEYVYSNLTDAIAAAKREEKQ
Ga0207652_107768811	3300025921	Corn Rhizosphere	MTGNNHQIDEAELTRLGIRRVERHVYQRGEYVYSNLGDAIAAAKREEKA
Ga0207652_108565091	3300025921	Corn Rhizosphere	PRSGTRTIFLQQGRQTMNHTDIKVDDAELTKLGIRRVERQVYQWGEYVYSNLGDALAAARRPAKS
Ga0207681_105440143	3300025923	Switchgrass Rhizosphere	MPKNDDHIDDAELTRLGIRRVERHVFQRGEYIYSNLGDALAAAKREGKA
Ga0207650_100468826	3300025925	Switchgrass Rhizosphere	MTDNDNQIDEVELARLGIRRVERDVFQRGEYIYSNLRDAIAAAKREERP
Ga0207650_100787822	3300025925	Switchgrass Rhizosphere	MTSNSNQVDEVELARLGIRRVERSVFQRGEYVYSNLKDAIDAAKRDARS
Ga0207690_102610783	3300025932	Corn Rhizosphere	MTSNENQIDEAELTRLGIRRVERHVFQWREYIYSNLGDAIAAAKREEKR
Ga0207690_103943352	3300025932	Corn Rhizosphere	MTNNDNDIDEVELARLGIRRMERHVFQVGEYIYSNLRDAIADAERAQKS
Ga0207690_105896883	3300025932	Corn Rhizosphere	MTENDTQMNDADLERLGIRRIERYVFQRGEYIYSNLRDAIAAAKRDGKS
Ga0207690_106281203	3300025932	Corn Rhizosphere	MNNTNDNQIDEMELARLGIRRVEKHVFQWGEYIYSNLSDALAAAKRGVKP
Ga0207669_104248884	3300025937	Miscanthus Rhizosphere	VTAKENQIEDSELARLGIRRVESQVFQVGEYVYSNLSDALASAKRR
Ga0207669_108550941	3300025937	Miscanthus Rhizosphere	PVPASKRMPMTSNHNQIDDAELARLGIRRVETQVFQVGEYIYSNLSDALASAKRRDRK
Ga0207691_106508071	3300025940	Miscanthus Rhizosphere	MTSSDNKIDDAELARLGIRRVESQVFQVGEYVYSNLSDALASARRRD
Ga0207711_108027592	3300025941	Switchgrass Rhizosphere	MTSSDNKIDDAELARLGIRRVESQVFQVGEYVYSNLSDALASARRRDRK
Ga0207679_103651591	3300025945	Corn Rhizosphere	SNDNQIDEVELARLGIRRVEAHVFQRGEYIYSNLRDAVAAAKREQRP
Ga0207667_101693123	3300025949	Corn Rhizosphere	MSENDNPVDDSELERLGIRRVEREVYQRGEYIYSNLRDALAAANREMKS
Ga0207640_107711893	3300025981	Corn Rhizosphere	NSMNENDNRIDDSELERLGIRRVEREVYQRGEYIYSNLRDALAAANREMKS
Ga0207639_114805913	3300026041	Corn Rhizosphere	MTSNDNQIDEVELARLGIRRVEKHVFQRGEYIYNNLNDALAAAKRDERA
Ga0207678_100591534	3300026067	Corn Rhizosphere	MTDNDNHMDDAELAKLGIRRVERQVYQRGEYVYSNLADALAAARRPVKS
Ga0207702_100145199	3300026078	Corn Rhizosphere	MSENDNKVDDSELERLGIRRVEREVYQRGEYIYSNLRDALAAANREMKS
Ga0208525_10102082	3300027288	Soil	VTAKENRIDDAELARLGIRRVESQVFQVGEYVYSNLSDALASAKRRDSK
Ga0268266_101722863	3300028379	Switchgrass Rhizosphere	MTSNDNEIDEVELARLGIKRVERAVFQFGDYTYTNARDAVAAAKRGQAS
Ga0247819_106883032	3300028608	Soil	MTSNDNQIDEVELARLGITRIERDVFQWGEYIYSNVRDAVAAAKRAETK
Ga0247827_101137261	3300028889	Soil	MPKNDDHIDDAELTRLGIRRVERHVFQRGEYIYSNLGDALAALE
Ga0247826_116109622	3300030336	Soil	VTQSPPNEERVMPKNDDQIDDAELTRLGIRRVERHVFQRGEYIYSNLGDALAAAKREGKA
Ga0310888_104304411	3300031538	Soil	PLTPHGQGTQMTSNDNQVDEVELARLGIRRVERNVFQRGEYIYSNVRDAIAAAKRGEEK
Ga0310888_105392123	3300031538	Soil	MTSNDNQIDEVELARLGIRRVERHVFQWGEYIYSNVRDAVAAARRGEAK
Ga0310886_100288125	3300031562	Soil	MPKNDDQIDDAELTRLGIRRVERHVFQRGEYIYSNLGDALAAAKREGKA
Ga0307405_104057402	3300031731	Rhizosphere	MTNNDNQIDETELARLGIRRVERHVFQWGEYIYSNVGDALAAARREDKR
Ga0307410_106160243	3300031852	Rhizosphere	MTSNDNQIDEMELARLGIKRVERAVFQFGVYTYSNVRDAIAAAKRDGRS
Ga0310892_100536735	3300031858	Soil	MPKNDDHIDDAELRRLGIRRVERHVFQRGEYIYSNLGDALAAAKREGKA
Ga0310893_102426953	3300031892	Soil	QIDDAELTRLGIRRVERHVFQRGEYIYSNLGDALAAAKREGKA
Ga0307406_112995351	3300031901	Rhizosphere	TPIPEGSSMYGNDNHIDEVELKRLGIRWVEKDVFQRGEYLYPSLHEAIAAAKKDEKA
Ga0308175_1000837496	3300031938	Soil	MTSNDNQIDEVELARLGIRRVERHVFQRGEYVYSNLMDAIAAAKREEKQ
Ga0308175_1004200223	3300031938	Soil	MSSNDNQIDEVELARLGIRHVEEHVFQRGEYIYSSLREAIAAAKRDEKK
Ga0308175_1005736903	3300031938	Soil	MTDNDNKIDDAELARLGIRRVERQVYQWGEYVYSNLGDALAAARRPVKS
Ga0308175_1009649122	3300031938	Soil	MNDNQVDEVELARLGIRRVEKHVFQWGEYIYSNVQDAVAAAKREQKS
Ga0308175_1019482252	3300031938	Soil	MTDNDNQIDDAELARLGIRRVERQVYQWGEYVYSNLGDALAAARRPAKS
Ga0308174_102720004	3300031939	Soil	MSSNDNQIDEVELARLGIRHVEEHVFQRGEYIYSSLSEAIAAAKRDEKK
Ga0308176_108206591	3300031996	Soil	LTTPIQQGRFMTHNDNQIDDAELARLGIRRVEREVYQWGEYIYGNLADALAAARREAKA
Ga0308176_129150912	3300031996	Soil	MTNNDNQIDDAELAKLGIRRVERQVYQWGEYVYSNLGDALAAARRPVKS
Ga0307416_1023676671	3300032002	Rhizosphere	IDEVELKRLGIRWVEKDVFQRGEYLYPSLHEAIAAAKKDEKA
Ga0307416_1028827983	3300032002	Rhizosphere	MACNDDEIDEAELARLGIRRVEGKVYQRGEYIFSNVRDAIAAAKREGNT
Ga0310897_106508572	3300032003	Soil	MTSNDNQVDEVELARLGIRRVERNVFQRGEYIYSNVRDAIAAAKRGEEK
Ga0307414_122009401	3300032004	Rhizosphere	MTSNDNQIDEIELARLGIRRVERHVFQWGEYIYSNVRDAVAAARRGEA
Ga0310902_102292192	3300032012	Soil	MTTMSSNDNQIDEVELARLGIRRVEGQVFQWGEYVYSNVGDAIAAAKRGVKK
Ga0310906_106062991	3300032013	Soil	RSRQPTPVTQSPPNEERVMPKNDDHIDDAELTRLGIRRVERHVFQRGEYIYSNLGDALAAAKREGKA
Ga0310899_106917212	3300032017	Soil	VTQSPQNEERVMPKNDDQIDDAELTRLGIRRVERHVFQRGEYIYSNLGDALAAAKREGKA
Ga0308173_108923852	3300032074	Soil	MTDNDNQMGEAELARLGIRRVERHVFQWGEYIYSNLRDAVAAARRGEKP
Ga0310890_104347402	3300032075	Soil	MTSNDNQIDEIELARLGIRRVEKHVFQWGEYIYSNVRDAVAAARRGEAK
Ga0310890_110708991	3300032075	Soil	DHIDDAELTRLGIRRVERHVFQRGEYIYSNLGDALAAAKREGKA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F041613

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences