Metagenome / Metatranscriptome Family F043687

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F043687
Family Type	Metagenome / Metatranscriptome
Number of Sequences	156
Average Sequence Length	60 residues
Representative Sequence	MAQGTVKDNVRDELDEAAGRGRRDREDRKEATPEEVRQPGSGGVKDNVQDEWAESQERR
Number of Associated Samples	59
Number of Associated Scaffolds	156

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	73.19 %
% of genes near scaffold ends (potentially truncated)	26.92 %
% of genes from short scaffolds (< 2000 bps)	79.49 %
Associated GOLD sequencing projects	56
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.16

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (71.795 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (51.282 % of family members)
Environment Ontology (ENVO)	Unclassified (51.282 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (64.744 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Mixed	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.16
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.16
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 156 Family Scaffolds
PF00781	DAGK_cat	3.85
PF13560	HTH_31	2.56
PF03729	DUF308	1.92
PF01595	CNNM	1.92
PF03471	CorC_HlyC	1.28
PF00313	CSD	1.28
PF05532	CsbD	0.64
PF09557	DUF2382	0.64
PF00353	HemolysinCabind	0.64
PF05598	DUF772	0.64
PF02080	TrkA_C	0.64
PF09335	SNARE_assoc	0.64
PF12728	HTH_17	0.64
PF13546	DDE_5	0.64
PF06475	Glycolipid_bind	0.64
PF00487	FA_desaturase	0.64
PF12697	Abhydrolase_6	0.64
PF11387	DUF2795	0.64
PF07366	SnoaL	0.64

COG ID	Name	Functional Category	% Frequency in 156 Family Scaffolds
COG1597	Phosphatidylglycerol kinase, diacylglycerol kinase family	Lipid transport and metabolism [I]	7.69
COG3247	Acid resistance membrane protein HdeD, DUF308 family	General function prediction only [R]	1.92
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	0.64
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	0.64
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	0.64
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	0.64
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.64
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	0.64
COG3554	Uncharacterized conserved protein	Function unknown [S]	0.64

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.79 %
All Organisms	root	All Organisms	28.21 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.79 %
cellular organisms	root	All Organisms → cellular organisms	28.21 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.79 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	28.21 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.79 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	25.64 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.79 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	25.00 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.79 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	22.44 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.79 %
Rubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales	22.44 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.79 %
Rubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	22.44 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.79 %
unclassified Rubrobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae	10.26 %
Rubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	1.92 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples	1.28 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.79 %
Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	10.26 %
uncultured Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	1.28 %
Rubrobacter marinus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter marinus	0.64 %
Rubrobacter xylanophilus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter xylanophilus	0.64 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.64 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000858\|JGI10213J12805_10595642	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	697	Open in IMG/M
3300000858\|JGI10213J12805_10783659	Not Available	621	Open in IMG/M
3300001431\|F14TB_100797740	Not Available	602	Open in IMG/M
3300004016\|Ga0058689_10175437	Not Available	510	Open in IMG/M
3300004463\|Ga0063356_103660222	Not Available	662	Open in IMG/M
3300005562\|Ga0058697_10012265	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter xylanophilus	2862	Open in IMG/M
3300005562\|Ga0058697_10168949	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	969	Open in IMG/M
3300006876\|Ga0079217_10312547	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	878	Open in IMG/M
3300006876\|Ga0079217_10409685	Not Available	804	Open in IMG/M
3300006876\|Ga0079217_10847538	Not Available	643	Open in IMG/M
3300006894\|Ga0079215_10101638	Not Available	1267	Open in IMG/M
3300006894\|Ga0079215_10900027	Not Available	634	Open in IMG/M
3300006894\|Ga0079215_10969072	Not Available	620	Open in IMG/M
3300006918\|Ga0079216_10024652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	2323	Open in IMG/M
3300006918\|Ga0079216_11011517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	643	Open in IMG/M
3300007004\|Ga0079218_11652631	Not Available	706	Open in IMG/M
3300007790\|Ga0105679_10545818	Not Available	1377	Open in IMG/M
3300009789\|Ga0126307_10066508	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2832	Open in IMG/M
3300009789\|Ga0126307_10094681	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	2362	Open in IMG/M
3300009789\|Ga0126307_10189380	Not Available	1650	Open in IMG/M
3300009789\|Ga0126307_10205414	Not Available	1580	Open in IMG/M
3300009789\|Ga0126307_10266837	Not Available	1376	Open in IMG/M
3300009789\|Ga0126307_10430506	Not Available	1064	Open in IMG/M
3300009789\|Ga0126307_10479273	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1004	Open in IMG/M
3300009789\|Ga0126307_10500858	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	980	Open in IMG/M
3300009789\|Ga0126307_10643720	Not Available	855	Open in IMG/M
3300009789\|Ga0126307_10784014	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	769	Open in IMG/M
3300009789\|Ga0126307_10840577	Not Available	741	Open in IMG/M
3300009789\|Ga0126307_11340083	Not Available	580	Open in IMG/M
3300009789\|Ga0126307_11353214	Not Available	577	Open in IMG/M
3300009789\|Ga0126307_11728753	Not Available	509	Open in IMG/M
3300009840\|Ga0126313_10204096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1518	Open in IMG/M
3300009840\|Ga0126313_10287011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1284	Open in IMG/M
3300009840\|Ga0126313_10486889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	986	Open in IMG/M
3300009840\|Ga0126313_10536565	Not Available	939	Open in IMG/M
3300009840\|Ga0126313_10634828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	862	Open in IMG/M
3300009840\|Ga0126313_10726311	Not Available	805	Open in IMG/M
3300009840\|Ga0126313_10948766	Not Available	703	Open in IMG/M
3300010036\|Ga0126305_10093466	Not Available	1794	Open in IMG/M
3300010036\|Ga0126305_10131739	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1538	Open in IMG/M
3300010036\|Ga0126305_10354254	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	961	Open in IMG/M
3300010036\|Ga0126305_10595567	Not Available	743	Open in IMG/M
3300010036\|Ga0126305_11251082	Not Available	513	Open in IMG/M
3300010037\|Ga0126304_10515421	Not Available	803	Open in IMG/M
3300010037\|Ga0126304_10563584	Not Available	767	Open in IMG/M
3300010037\|Ga0126304_10683868	Not Available	693	Open in IMG/M
3300010038\|Ga0126315_10020380	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	3318	Open in IMG/M
3300010038\|Ga0126315_10051361	Not Available	2239	Open in IMG/M
3300010038\|Ga0126315_10074431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1900	Open in IMG/M
3300010038\|Ga0126315_10439101	Not Available	825	Open in IMG/M
3300010038\|Ga0126315_10716004	Not Available	654	Open in IMG/M
3300010039\|Ga0126309_10032240	All Organisms → cellular organisms → Bacteria	2391	Open in IMG/M
3300010039\|Ga0126309_10048215	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	2026	Open in IMG/M
3300010039\|Ga0126309_10093798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1532	Open in IMG/M
3300010039\|Ga0126309_10112213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1420	Open in IMG/M
3300010039\|Ga0126309_10141732	Not Available	1283	Open in IMG/M
3300010039\|Ga0126309_10445918	Not Available	785	Open in IMG/M
3300010039\|Ga0126309_10507967	Not Available	743	Open in IMG/M
3300010039\|Ga0126309_10968081	Not Available	569	Open in IMG/M
3300010040\|Ga0126308_10088900	Not Available	1873	Open in IMG/M
3300010040\|Ga0126308_10220522	Not Available	1225	Open in IMG/M
3300010040\|Ga0126308_10315792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1029	Open in IMG/M
3300010040\|Ga0126308_10493210	Not Available	827	Open in IMG/M
3300010040\|Ga0126308_10700799	Not Available	696	Open in IMG/M
3300010040\|Ga0126308_10828583	Not Available	642	Open in IMG/M
3300010040\|Ga0126308_10957957	Not Available	598	Open in IMG/M
3300010041\|Ga0126312_10221583	All Organisms → cellular organisms → Bacteria	1325	Open in IMG/M
3300010041\|Ga0126312_10531840	Not Available	842	Open in IMG/M
3300010041\|Ga0126312_10591284	Not Available	797	Open in IMG/M
3300010041\|Ga0126312_10701037	Not Available	731	Open in IMG/M
3300010041\|Ga0126312_11142905	Not Available	573	Open in IMG/M
3300010042\|Ga0126314_10120536	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	1803	Open in IMG/M
3300010042\|Ga0126314_10305105	Not Available	1137	Open in IMG/M
3300010042\|Ga0126314_10636068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	780	Open in IMG/M
3300010042\|Ga0126314_10678450	Not Available	754	Open in IMG/M
3300010042\|Ga0126314_10900996	Not Available	654	Open in IMG/M
3300010042\|Ga0126314_10951300	Not Available	636	Open in IMG/M
3300010044\|Ga0126310_10069607	Not Available	2031	Open in IMG/M
3300010044\|Ga0126310_11052203	Not Available	644	Open in IMG/M
3300010045\|Ga0126311_11153637	Not Available	639	Open in IMG/M
3300010045\|Ga0126311_11869865	Not Available	510	Open in IMG/M
3300010166\|Ga0126306_10188635	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1551	Open in IMG/M
3300010166\|Ga0126306_10800427	Not Available	760	Open in IMG/M
3300010166\|Ga0126306_10822991	Not Available	750	Open in IMG/M
3300010166\|Ga0126306_11077664	Not Available	657	Open in IMG/M
3300012093\|Ga0136632_10203594	Not Available	902	Open in IMG/M
3300012186\|Ga0136620_10346386	Not Available	639	Open in IMG/M
3300012678\|Ga0136615_10133750	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1176	Open in IMG/M
3300012939\|Ga0162650_100016668	Not Available	1019	Open in IMG/M
3300014488\|Ga0182001_10428570	Not Available	585	Open in IMG/M
3300014497\|Ga0182008_10922232	Not Available	515	Open in IMG/M
3300018432\|Ga0190275_10601724	Not Available	1147	Open in IMG/M
3300018432\|Ga0190275_10645678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1111	Open in IMG/M
3300018432\|Ga0190275_11501402	Not Available	751	Open in IMG/M
3300018432\|Ga0190275_12354606	Not Available	611	Open in IMG/M
3300018465\|Ga0190269_10217894	Not Available	1048	Open in IMG/M
3300018466\|Ga0190268_10024460	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	2032	Open in IMG/M
3300018466\|Ga0190268_10309614	Not Available	954	Open in IMG/M
3300018466\|Ga0190268_11146557	Not Available	638	Open in IMG/M
3300018466\|Ga0190268_11905810	Not Available	541	Open in IMG/M
3300018469\|Ga0190270_10761300	Not Available	969	Open in IMG/M
3300018469\|Ga0190270_11618644	Not Available	700	Open in IMG/M
3300018476\|Ga0190274_10134988	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter marinus	2047	Open in IMG/M
3300018476\|Ga0190274_10723921	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1043	Open in IMG/M
3300019377\|Ga0190264_10316639	Not Available	956	Open in IMG/M
3300019767\|Ga0190267_10352894	Not Available	794	Open in IMG/M
3300024430\|Ga0196962_10002066	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	6565	Open in IMG/M
3300027639\|Ga0209387_1072617	Not Available	798	Open in IMG/M
3300027691\|Ga0209485_1101884	Not Available	810	Open in IMG/M
3300028578\|Ga0272482_10022532	Not Available	1590	Open in IMG/M
3300028754\|Ga0307297_10066496	Not Available	1138	Open in IMG/M
3300030496\|Ga0268240_10041534	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	960	Open in IMG/M
3300030496\|Ga0268240_10054000	Not Available	867	Open in IMG/M
3300030510\|Ga0268243_1053992	Not Available	874	Open in IMG/M
3300031091\|Ga0308201_10199397	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	660	Open in IMG/M
3300031092\|Ga0308204_10243412	All Organisms → cellular organisms → Bacteria → Terrabacteria group	580	Open in IMG/M
3300031548\|Ga0307408_101578333	Not Available	623	Open in IMG/M
3300031548\|Ga0307408_102171801	Not Available	536	Open in IMG/M
3300031824\|Ga0307413_10111432	Not Available	1832	Open in IMG/M
3300031852\|Ga0307410_10891238	Not Available	762	Open in IMG/M
3300031901\|Ga0307406_11410839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	611	Open in IMG/M
3300031995\|Ga0307409_101143567	Not Available	801	Open in IMG/M
3300031995\|Ga0307409_101537835	Not Available	693	Open in IMG/M
3300031995\|Ga0307409_101773345	Not Available	646	Open in IMG/M
3300031995\|Ga0307409_102778689	Not Available	517	Open in IMG/M
3300032002\|Ga0307416_100134461	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	2234	Open in IMG/M
3300032004\|Ga0307414_12110802	Not Available	526	Open in IMG/M
3300032005\|Ga0307411_10849014	Not Available	808	Open in IMG/M
3300032080\|Ga0326721_10783148	Not Available	596	Open in IMG/M
3300032126\|Ga0307415_100421894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1145	Open in IMG/M
3300032126\|Ga0307415_100897623	Not Available	817	Open in IMG/M
3300032126\|Ga0307415_101332523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	681	Open in IMG/M
3300032126\|Ga0307415_102282648	Not Available	531	Open in IMG/M
3300032159\|Ga0268251_10170630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	834	Open in IMG/M
3300033989\|Ga0334924_038616	Not Available	611	Open in IMG/M
3300034132\|Ga0334915_005692	All Organisms → cellular organisms → Bacteria	2134	Open in IMG/M
3300034376\|Ga0334923_088593	Not Available	641	Open in IMG/M
3300034391\|Ga0334917_044083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	795	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.97%
Host-Associated	Host-Associated	16.03%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.05%
Plants	Host-Associated → Plants	16.03%
Aquatic	Environmental → Aquatic	1.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.41%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.90%
Phylloplane	Host-Associated → Plants → Phylloplane	3.85%
Freshwater	Environmental → Aquatic → Freshwater	1.92%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.64%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.64%
Phyllosphere	Host-Associated → Plants → Phyllosphere	0.64%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	76.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.90%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	3.85%
Soil Crust	Environmental → Terrestrial → Soil → Soil Crust	2.56%
Ice	Environmental → Aquatic → Freshwater → Ice	1.92%
Sand	Environmental → Terrestrial → Soil → Sand	1.28%
Loam	Environmental → Terrestrial → Soil → Loam	0.64%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.64%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.64%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	0.64%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	67.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.90%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.69%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	3.85%
Unclassified	Environmental → Terrestrial → Soil → Soil Crust → Unclassified	2.56%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	1.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.28%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	1.28%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.64%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.64%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.64%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.64%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	0.64%

Habitat	Taxonomy	Distribution
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	51.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.46%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	10.26%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	7.69%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.56%
Hypolithic Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust	2.56%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.28%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	1.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.64%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.64%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.64%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.64%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.64%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	0.64%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004016	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz	Host-Associated	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300012093	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ611 (21.06)	Environmental	Open in IMG/M
3300012186	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ416 (21.06)	Environmental	Open in IMG/M
3300012678	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ288 (22.06)	Environmental	Open in IMG/M
3300012939	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015	Environmental	Open in IMG/M
3300014488	Bulk soil microbial communities from Mexico - San Felipe (SF) metaG	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300024430	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20	Environmental	Open in IMG/M
3300027639	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control (SPAdes)	Environmental	Open in IMG/M
3300027691	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100 (SPAdes)	Environmental	Open in IMG/M
3300028578	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT160D0	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300030496	Bulk soil microbial communities from Mexico - Penjamo (Pe) metaG (v2)	Environmental	Open in IMG/M
3300030510	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032080	Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300033989	Biocrust microbial communities from Mojave Desert, California, United States - 20HNC	Environmental	Open in IMG/M
3300034132	Biocrust microbial communities from Mojave Desert, California, United States - 11HMC	Environmental	Open in IMG/M
3300034376	Biocrust microbial communities from Mojave Desert, California, United States - 19HNC	Environmental	Open in IMG/M
3300034391	Biocrust microbial communities from Mojave Desert, California, United States - 13HMC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10213J12805_105956421	3300000858	Soil	MAQGTLKDNARDELDEAAGRGRRDREDRKEATPQEVKQPGSGGVKDNVKDEWA
JGI10213J12805_107836591	3300000858	Soil	MAQGTVKDNVRDELDKAAGRGRRDREDRKGATPEEVRQPASGGVKDNVRDESAESQERR*
F14TB_1007977402	3300001431	Soil	MAQGTVKDNVRDELDEAAGYRKEAPHRKEATPEEVRQPGSGGVKDNVKDEWAESQERR*
Ga0058689_101754371	3300004016	Agave	GLIKEVGGTKDNVSDELDEAAGRGRRRREESKEAAPEEVGQPGSGGVKANVGDEFSESQERH*
Ga0063356_1036602222	3300004463	Arabidopsis Thaliana Rhizosphere	MAQGTVKDNVRDELDEAAGRGRREREERKEATPEEVRLPGSGGVKDNVRDEWADSQERR*
Ga0058697_100122652	3300005562	Agave	VTDRRTGSGGTEDNVRDELDEAAERGRREGDTRKEAVEGQAGSGGVKDNVRDEWDESQERR*
Ga0058697_100778803	3300005562	Agave	MTELEHRLGSGGAKDNVRDELAEALGKAEGETARKEAAPEEERPPGSGGIKDNVRDELSESQERR*
Ga0058697_101554501	3300005562	Agave	MTELEHRVGSGGAKDNVSHELDEAAGRGRRGREDRKEAAPEEVGRPGSGGVKANVRDEW
Ga0058697_101689492	3300005562	Agave	MAKGTVKDNVRDELDEAAGRGRREREERKDATPEEVRQPGSGGIKDNVQDEWAESQERR*
Ga0058697_106736621	3300005562	Agave	MTELDYRPGSGGVKDNVRDELDEAARQGRGGRTTRKEAAPEEVGQPGSGGVKDNVRDELAESQESL
Ga0079217_103125472	3300006876	Agricultural Soil	MAQGTVKDNARDELDEAAGRGRRDREDRKEATPEEVKQPGSGGVKDNVQDEWAESQERR*
Ga0079217_104096851	3300006876	Agricultural Soil	MTELDHRLGSGGAKDNVRDELAEAAGQGRGGRTARKEAAPEEERPPGSEGVKDNVRDELAESQESR*
Ga0079217_108475381	3300006876	Agricultural Soil	MAQGTVKDNARDELDEAAGRGRRDREVRKEATPEEVKQPGSGGVKDNVKDEWAESQERL*
Ga0079215_101016381	3300006894	Agricultural Soil	MAQGTVKDNTRDELDEAAGRGRRDREDRKEATPEEVKEPGSGGVKGNVQDEWAESQERR*
Ga0079215_109000271	3300006894	Agricultural Soil	MALGTVKDNVRDELNEAAGRGRRDREDRKEATPEEVRQPGSGGVKDNVQDEWAESQQRR*
Ga0079215_109690722	3300006894	Agricultural Soil	MAQGTVKDNVRDELDKAAGRGRRDREDRKGATPDEVRQPASGGVKDNVRDESAESQERS*
Ga0079216_100246522	3300006918	Agricultural Soil	MALGTVKDNIRDELDEAAGRGRRDREDRKEATPEEVKQPGSGGVKDNVKDEWAESQERL*
Ga0079216_107487432	3300006918	Agricultural Soil	MTELDHRLGSGGAKDNVRDELAEAAGQGRDGRTARKEAAPEEERPPGSGGVKDNVRDELAESQESR*
Ga0079216_110115172	3300006918	Agricultural Soil	MAQGTVKDNVRDELDEAAGRGRREREERKEATPDGARRPGSGGVKNNVQDEWAGSQERR*
Ga0079218_116526312	3300007004	Agricultural Soil	MAQGTVKDNIRDELDEAAGRGRRDRDDRKEATPEEVKQPGSGGVKDNVRDEWAESQERR*
Ga0105679_105458181	3300007790	Soil	MAQGTVKDNARDELDEAAGRGRRDREDRKEATPEEVKQPGSGGVKNNVRDEWAESQERR*
Ga0126307_100665083	3300009789	Serpentine Soil	MAQRTVKDNVRDELDEASGRGRREREDRKEAAPEEVVQPGSGGVKDNVRDELAETQERR*
Ga0126307_100946814	3300009789	Serpentine Soil	MAQGTVKDNARDELDEAAGRGRRDREDRKEATPQEVKQPGSGGVKDNVQDEWAESQQRR*
Ga0126307_101893804	3300009789	Serpentine Soil	MAQGTVKDNVRDELDEAAGRGRRDREDRKEATPEEVRQPGSGGVKDNVQDEWAESQERR*
Ga0126307_102054142	3300009789	Serpentine Soil	TTGRIKEAGGTKDNVRDELDEAAGRGRRKRDDRKEAPEEVGQPGSGGVKANVRDELAESQGRR*
Ga0126307_102668372	3300009789	Serpentine Soil	MTRGTVKDNVRDELDEAAGRGRRGREDRKEVTPEEVRQPGSGGLKDNVRDEWAESQERR*
Ga0126307_104305063	3300009789	Serpentine Soil	MTQGTVKENVRDELNEAAGRGRRDREDRKEAALEEVRQPGSGGVKDNVRDESAESQERS*
Ga0126307_104792732	3300009789	Serpentine Soil	MTQGTVKDNVRDELNEAAGRGRREREDRKEATPQEVRQPGSGGVKDTVQDELAESQERR*
Ga0126307_105008583	3300009789	Serpentine Soil	MAQGTVKDNVRDELDEAAGRGTREREERKEATPEEVRQPGSGGVKDNVRDEWADSQERR*
Ga0126307_106437201	3300009789	Serpentine Soil	QERRDQDMAQGTVKDNVRDELDKAAGRGRRDREDLKGATPEEVRQPGSGGVKDNVRDESAESQERR*
Ga0126307_107840142	3300009789	Serpentine Soil	MAQGSVKDNARDELDEAAGRGRREREDHKEVTPEEVKQPGSGGVKDNVRDEWAESQERR*
Ga0126307_108405772	3300009789	Serpentine Soil	MTERDRRPGSGGVKDNVRDELDEAAGQGRRRSAAQKEAAPKVEEPPGSGGIKDNVRDEWDSSQESR*
Ga0126307_113400831	3300009789	Serpentine Soil	MTQGTVKENVRDELDEAAGRGRRNRDDRKEAAPAEVRQPGSGGVKDNVRDEWAESQERR*
Ga0126307_113532142	3300009789	Serpentine Soil	MAQGTVKDNVRDELDKAAGRGRRDREDRKGATPEEVRQPASGGVKDNVRDESAESQQRR*
Ga0126307_116363581	3300009789	Serpentine Soil	MKELDHRLGSGGAKDNVRDELAEAAGQGRGGRTARKEAAPEEERPPGSGGVKDNVRDELAESQESR*
Ga0126307_117009241	3300009789	Serpentine Soil	MTELEHRLGSGGAKDNVRDELAEAAGQGRGGRTARKEAAPEEERPPGSGGVKDNVRDEWAESQERR*
Ga0126307_117287531	3300009789	Serpentine Soil	MAQGTAKDNARDELDEAAGRGRRDREDRKEATPEEVKQPGSGGVKDNVQDEWAESQERR*
Ga0126313_102040961	3300009840	Serpentine Soil	MTQGNVKDNVRDELDEAAGRSRREREDRKEAALEEVRQPGSGGVKDNVRDEWAESQERS*
Ga0126313_102870113	3300009840	Serpentine Soil	MAQGTVKDNARDELDEAAGRGRRDREDRKEATPQEVKQPGSGGVKDNVKDEWAESQQRR*
Ga0126313_104868892	3300009840	Serpentine Soil	MAQGTVKDNVRDELDKAAGRGRRDREDRKGATPEEVRQPASGGVKDNVRDEWAESQERR*
Ga0126313_105365651	3300009840	Serpentine Soil	MAKGTVKDNLRDELDEAAGRGRREREECKDATPEEVRQPGSGGIKDNVRDEWAESQERR*
Ga0126313_105603011	3300009840	Serpentine Soil	TKESSMTELDHRLGSGGVKDNARDELAEAAGQGSGGRTARKEAAPEEERPPGSGGVKDNVRDELAETQESR*
Ga0126313_106348282	3300009840	Serpentine Soil	MAQGTVKDNVRDELDEAAGRGRREREERKEATPEEVRQPGSGGVKDNVRDEWADSQERR*
Ga0126313_107263112	3300009840	Serpentine Soil	GTKDNVTDELDEAAGRGRRKRDDRKEASEEVGQPGSGGVKANVRDEWAESQGRR*
Ga0126313_109487662	3300009840	Serpentine Soil	VKDNVRDELDEAAGRGRREREDRKEAAPEEVVQPGSGGVKDNVQDELAETQERR*
Ga0126313_117695361	3300009840	Serpentine Soil	MTELDHRLGSGGAKDNVRDELAEAAGQGRGGRTARKEAAPEEGPPGSGGIKDNVRDELSESQESR*
Ga0126305_100934663	3300010036	Serpentine Soil	MTKLDHRLGSGGAKDNVRDELAEAAGQGRGGRTARKEAAPEEERPPGSGGVKDNVRDELAESQESR*
Ga0126305_101317392	3300010036	Serpentine Soil	MAQGTVKDNVRDELDKAAGRARRKRGDREEATPEEVRQPGSGGVKDN
Ga0126305_103542542	3300010036	Serpentine Soil	MTQGTVKDNVRDELDEAAGRGRREREDRKEATPQEVRQPGSGGVKDTVQDELAESQERR*
Ga0126305_105955672	3300010036	Serpentine Soil	MTRGTVKDNVRDELDEAAGRGRRDREDRKGATREEVRQPASVGVKDNVRDESAESQERR*
Ga0126305_112510821	3300010036	Serpentine Soil	KESTMTELDHRLGSGGVKDNARDELAEAAGQGSGGRTARKEAAPEEERPPGSGGVKDNVRDELAETQESR*
Ga0126304_102548891	3300010037	Serpentine Soil	MTERDRRPGSGGVKDNVRDELDEAAGQGRGGRTAHKKAAPEVEEPPGTGGIKDNFRDELALTQESR*
Ga0126304_105154212	3300010037	Serpentine Soil	MAQGTVKDNVRDELDKAAGRARRKRGDREEATPEEVRQPGSGGVKDNVRDESAESQERR*
Ga0126304_105635841	3300010037	Serpentine Soil	MTQGTVKENVRDELNEAAGRGRRDREDRKEAALEEVRQPGSGGVKDNVRDESAESQERR*
Ga0126304_106760091	3300010037	Serpentine Soil	MTELEHRLGSGGAKVNVRDELAEAAGQGRGGRTARKEAAPEERPPGSGGVKDNVRDELAETQESR*
Ga0126304_106838683	3300010037	Serpentine Soil	MTRGTVKDNVRDELDEAAGRGRRDREDRKGATPEEVRQPGSGGVKDNVR
Ga0126315_100203803	3300010038	Serpentine Soil	MAQGTVKDNVRDELDEAAGRGRRKREDRKEATPEELKQPGSGGVKDNVRDEWAESQERR*
Ga0126315_100513613	3300010038	Serpentine Soil	GTKDNVTDELDEAAGRGRRKRDDRKEAPEEVGQPGSGGVKANVRDELAESQGRR*
Ga0126315_100744311	3300010038	Serpentine Soil	QERRAQDMTQGTVKENVRDELDEAAGRGRRNRDDRKEAAPAEVRQPGSGGVKDNVRDEWAESQERR*
Ga0126315_104391011	3300010038	Serpentine Soil	MAQGTVKDNVRDELDEAAGRGRREREVRREATPKEVRQPGSGGVKDNVQDEWAETQERR*
Ga0126315_107160041	3300010038	Serpentine Soil	MAQGTVKDNAKDELDEAAGRGRRDREARKEATPQEVKQPGSGGVEDNVKDEWAESQQRS*
Ga0126309_100322402	3300010039	Serpentine Soil	MAQGTVKDNARDELDEAAGRGRRDREVRKEATPEEVKQPGSGGVKDNVRDEWAESQERR*
Ga0126309_100482153	3300010039	Serpentine Soil	VEPYEQERWAQDMPQGTVKDNVRDELDEATGRGRRDREDRKEATPEEVRHTGSGGVKDNVQDEWAESQKRR*
Ga0126309_100937981	3300010039	Serpentine Soil	MAQGSVKDNARDQLDEAAWRGRRDREDHKEVTPEEVKQPGSGGVKDNVRDEWAESQERR*
Ga0126309_101122131	3300010039	Serpentine Soil	MAQGTAKDNARDELDEAAGRGRRDREVRKEATPEEVKQPGSGGVKDNVQDEWAESQERR*
Ga0126309_101417322	3300010039	Serpentine Soil	MAQGTVKDNVRDELDEAVGRGRRDRVDRKEATPEELKQPGSGGVKDNVQDEWAESQERR*
Ga0126309_104459181	3300010039	Serpentine Soil	QDMAQGTVKDNVRDELDKAAGRGRRDREDRKGATPEEVRQPASGGVKDNVRDESAESQERR*
Ga0126309_105079672	3300010039	Serpentine Soil	MAQGTVKDNVSDELDEAAGRGRRDREDRKEAAPEEVGQPGSGGVKANVRDELAESQERR*
Ga0126309_109680811	3300010039	Serpentine Soil	MAQGTVKDNVRDELDEAAGRGRRDREDRKEATPEEIVRQLGSGGVKDNVRDEWADSQERR
Ga0126308_100889004	3300010040	Serpentine Soil	MAQGTVKDNVRDELDEAAVRGRRNREDRKEATPEELKQPGSGGVKDNVQDELAESQERR*
Ga0126308_102205221	3300010040	Serpentine Soil	KDNVRDELAEAAGQGRGGRTARKEAAPEEERPPGSGGVKDNVRDELAESQESR*
Ga0126308_103157922	3300010040	Serpentine Soil	MTQGTVKENVRDELDEAAGRGRRDTEDRKEATPEEVKQPGSGGVKDNVKDEWAESQERR*
Ga0126308_104932102	3300010040	Serpentine Soil	MAQRTVKDNVRGELDEAAGRGRREREDRKEAAPEEVVQPGSGGVKDNVRDELAETQERR*
Ga0126308_106301932	3300010040	Serpentine Soil	MTELEHRLGSGGVKDNARDELAEAAGQGSGGRTARKEAAPEEERPPGSGGVKDNVRDELAETQESR*
Ga0126308_107007991	3300010040	Serpentine Soil	MTRGTVKDNVRDELDEAAGRGRRDREDRKEATPEEVRQPGSGGVKDNVQDEWAEPQERR*
Ga0126308_108285831	3300010040	Serpentine Soil	QERRDQDMAQGTVKDNVRDELDKAAGRGRRDREDRKGATPEEVRQPASGGVKDNVRDEWAESQERR*
Ga0126308_109579571	3300010040	Serpentine Soil	QGTVKDNARDELDEAAGRGRRDREDRKEATPQEVKQPGSGGVKDNVQDEWAESQQRR*
Ga0126312_102215832	3300010041	Serpentine Soil	MAQGTVKDNVRDELDKAAGRGRRDREDRKGATPEEVRQPGSGGVKDNVRDESAESQEHR*
Ga0126312_105318401	3300010041	Serpentine Soil	MTQGTVKDNARDELDEAAGRGRRNRDDRKEAAPAEVRQPGSGGVKDNVRDEWAESQERR*
Ga0126312_105572092	3300010041	Serpentine Soil	MTELDHRLGSGGAKDNVRDELAEAAGQGRGGRTARKEAAPEEERPPGSGGVKDNVRDELAESQESR*
Ga0126312_105912842	3300010041	Serpentine Soil	MAQGTVKDNARDELDEAAGRGRRESEDRKEATPEEVKQPGSGGVKDNVKDEWAES
Ga0126312_107010372	3300010041	Serpentine Soil	MAQGSVKDNARDELDEAAWRGRRDREDHKEVTPEEVKQPGSGGVKDNVRDEWAESQERR*
Ga0126312_111429051	3300010041	Serpentine Soil	MAQGNVKDNVRDELDEAAGRSRREREDRKEAALEEVRQPGSGGVKDNVRDEWAESQERS*
Ga0126314_101205362	3300010042	Serpentine Soil	MAQGTVKDNVRDELDEAAGREAGAREERKEATPEEVRQPGSGGVKDNVQDEWAESQARR*
Ga0126314_103051051	3300010042	Serpentine Soil	NVRDELAEAAGQGRGGRTARKAAAPEEERPPGSGGVKDNVRDELAESQESR*
Ga0126314_106360681	3300010042	Serpentine Soil	GGTKDNVRDELDEAAGRGRRKRGDRKEAAPEVVGQPGSGGVKANVRDEWAESQERR*
Ga0126314_106784503	3300010042	Serpentine Soil	QERRDQDMAQGTVKDNVRDELDKAAGRGRRDREDRKGATPEEVRQPASGGVKDNVRDESAESQEHR*
Ga0126314_109009961	3300010042	Serpentine Soil	NVRDELAEAAGQGRGGRTARKEAAPEEERPPGSGGVKDNVRDELAESQESR*
Ga0126314_109513001	3300010042	Serpentine Soil	NLRDELDEAAGRGRRERDDRKDAVLEEVGQPGSGGVKDNVRDEWAESQESR*
Ga0126314_112125341	3300010042	Serpentine Soil	MTELDHRLGSGGAKDNVTDELAEAAGQGRGGRTARKEAAPEEERPPGSGGVKDNVRDELAESQ
Ga0126314_114034781	3300010042	Serpentine Soil	GRIKEAGGTKDNLTDELDEAAGRGRRRRDDRKEAASEEVGQPGSGGVKANVRDEWAESQERR*
Ga0126310_100696074	3300010044	Serpentine Soil	MTELDHRLGSGGAKDNVRDELAEAAGQGRGGRTARKEAAPEEERTPGSGGVKDNVRDELAESQESR*
Ga0126310_110522031	3300010044	Serpentine Soil	MAQGTVKDNVRDELDQAAGRGRRDREERKGATPEEVRQPASGGVKDNVRDESAESQEHR*
Ga0126311_104330012	3300010045	Serpentine Soil	MTELDHRLGSGGIKDNVRDELAEAAGQGRGGRTARKEAAPEEERPPGSGGVKDNVRDELAESQESR*
Ga0126311_111536371	3300010045	Serpentine Soil	QGTVKDNVRDELDEAAGREAGAREERKEATPEEVRQPGSGGVKDNVQDEWAESQARR*
Ga0126311_118698651	3300010045	Serpentine Soil	MAQGSVKDNARDELDEAAGRGRREREHHKEVTPGEVKQPGSGGVKGNVRDEWAESQERR*
Ga0126306_101886352	3300010166	Serpentine Soil	MAQGTVKYNARDELDEAAGRGRRDREVRKEATPEEVKQPGSGGGKDNVQDEWAESQERR*
Ga0126306_107093481	3300010166	Serpentine Soil	MTERERRPGSGGTLDNVRDERDEAAGQGKRGRTDRKEAAPEEVVQPGSGGVKDNVRDELAESQENL*
Ga0126306_108004271	3300010166	Serpentine Soil	NVSDELDEAAGRGRRRRDDRKEAAPEEVGRPGSGGVKANVRDELAESQERR*
Ga0126306_108229912	3300010166	Serpentine Soil	MTRGTVKDNVRDELDEAAGRGRRDREDRKGATPEEVRQPGSGGVKDNVRDEWAESQERR*
Ga0126306_110776642	3300010166	Serpentine Soil	MAQGSVKNNARDELDEAAGRGRREREDHKEVTPEEVKQPGSGGVKDNV
Ga0136632_102035942	3300012093	Polar Desert Sand	MTPGTVKDNARDELEKAAGRGRRNREDRKEATPEKARQSGSGGVKDNVQDEWDQSQERR*
Ga0136620_103463861	3300012186	Polar Desert Sand	MTQGTVKDNARDKLDEAAGRGRREREDRKEATPEKVRQSGSGGVKDNVQDEWDQSQERR*
Ga0136615_101337501	3300012678	Polar Desert Sand	MAQGTLKDNARDELDKAAGRGRRDREDRKEATPEKVRQSGSGGVKDNVQDEWDQSQERR*
Ga0162650_1000166681	3300012939	Soil	ENVRDELDEAAGRGRRKRDDRKEAAPEEVGQPGSGGVKANVRDELAESQGRR*
Ga0182001_104285701	3300014488	Soil	MTHGTVKDNARDELDKAAGRGRREREDRKEAAPEEVKQPGSGGVKDNVQDEWAESQERR*
Ga0182008_109222322	3300014497	Rhizosphere	MAQGTVKDNVGDELDEAAGRGRRKREGRKEAAPEDVGRPGSGGVKANVRDELAESQERR*
Ga0190275_106017241	3300018432	Soil	KEAGGTKDNARDELDEAAGRGRRKRDDRKEAAHEVVGQPGSGGVKANIRDELAESQERR
Ga0190275_106456783	3300018432	Soil	MAQGTVKDNARDELDEAAGRGRRDRENRKEDTPEVVRQPGSGRVKDNVKDEWDESQERR
Ga0190275_115014022	3300018432	Soil	MAQGTVKDNVRDELDEAAGRGRREREERKEATPEEVRQPGSGGVKDNVRDEWADSQERR
Ga0190275_123546062	3300018432	Soil	TDELDEAAGRGRRGREDRKEAAPEEVGRPGSGGVKANVRDEWAESQERR
Ga0190269_102178941	3300018465	Soil	MAQGTVKDNVRDELDEAAGRGRREREERKEATPEEIVRQPGSGGVKDNVRDEWADSQERR
Ga0190268_100244601	3300018466	Soil	ERWAPDMAQGTVKDNARDELDEAAGRGRRDREVRKEATLEEVKQPGSGGVKDNVQDEWAESQERR
Ga0190268_103096142	3300018466	Soil	MAQGTVKDNIRDELDEAAGRGRRDREDRKEATPEEVKQPGSGGVKDNVQDEWAETQERR
Ga0190268_111465572	3300018466	Soil	MAQGTVKDNARDELDEAAGRGRRDREVRKEATPEEVKQPGSGGVKDNVQDEWAESQERR
Ga0190268_119058101	3300018466	Soil	MAQGTVKDNVRDELDKAAGRGRRDREDRKGATPEEVRQPASGGVKDNVRDESAESQQRR
Ga0190270_107613002	3300018469	Soil	MTRGTVKDNVRDELDEAAGRGRRDREDRKGATPEEVRQPGSGGVKDNVQDEWAESQERR
Ga0190270_108648781	3300018469	Soil	MTELDHRLGSGGAKDNVRDELAEAAGQGRGGRTARKEAAPEEERPPGSGGVKDNVRDELAESQESR
Ga0190270_116186441	3300018469	Soil	MAQGTVKDNVRDELDEAAGRGRREREERKGATTEEIVRQPGSGGVKDNVRDEWADSQERR
Ga0190274_101349883	3300018476	Soil	MAQGTVKDNIRDELDEAAGRGRRDREDRKEATPEEVKQPGSGGVKDNVQDEWAESQERR
Ga0190274_107239213	3300018476	Soil	MAQGTIKDNVRDELDEAGGRSRRDREERKEATPEEIVRQPGSGGVKDNVWDEWADSQERR
Ga0190274_137334001	3300018476	Soil	MTELDHRLGSGGGKDNVRDELAEAAGQGRGGRTARKEAAPEEGPPGSGGVKDNVRDELAESQESR
Ga0190264_103166391	3300019377	Soil	MTELDHRLGSGGVKDNARDELAEAAGQGRGGRTARKEAAPEEERPPGSGGVKDNVRDELSESQESR
Ga0190267_103528941	3300019767	Soil	KDNVRDELDEAAGPGGGERDDRKEAAPEEVGQPGSGGVKANVRDEWAESQERR
Ga0196962_100020666	3300024430	Soil	MAQGTVKDNARDELDEAAGRGRRDREVRKEATPEEVKQPGSGGVKDNVRDEWAESQERR
Ga0209387_10726172	3300027639	Agricultural Soil	MAQGTVKDNTRDELDEAAGRGRRDREDRKEATPEEVKEPGSGGVKGNVQDEWAESQERR
Ga0209485_11018842	3300027691	Agricultural Soil	MTELDHRLGSGGGKDNARDELAEAAGQGRDGRTARKEAAPEEERPPGSGGVKDNVRDELAESQESR
Ga0272482_100225322	3300028578	Soil	MTRGTVKDNVRDELDEAAGRGRRDREDRKEAAPEEVKQPGSGGVKDNVRDEWAESQERR
Ga0307297_100664961	3300028754	Soil	MAQGTVKDNVRDELDEAAGRGRREREERKEATPEEVRQPGSGGIKDNVRDEWADSQERR
Ga0268240_100415343	3300030496	Soil	GSGGTKDNVRDELGQAAGQGRRRRAAPEEVVQPGSGGIKDNVRDELAESQERR
Ga0268240_100540003	3300030496	Soil	MTERERRPGSGGVKDNVREELEEAAAGQGRRRRGARKEAAPEVEEPPGSGGIKDNVRDEWDSSQES
Ga0268243_10539921	3300030510	Soil	MTELEHRVGSGGAKDNVSHELDEAAGRGRRGREDRKEAAPEEVGRPGSGGVKANVRDEWAESQERR
Ga0308201_101993971	3300031091	Soil	MAQGTVKDNVRDELDEAAGRGRRAREERKEATPEEIARQPGSGGVKDNVQDEWADSQQRR
Ga0308204_102434122	3300031092	Soil	MTELDHRLGSGGAKDNVRDELAEAAGKGRGGRTARKEAAPEEERPPGSGGVKDNVRDELSESQESR
Ga0307408_1015783332	3300031548	Rhizosphere	MTELDHRLGSGGVKDNARDELAEAAGQGRGGRTARKEAAPEEERPPGSGGVKDNVRDELAESQESR
Ga0307408_1021718011	3300031548	Rhizosphere	MAQGTVKDNVRDELDEAAVRGRRNREDRKEATPEELKQPGSGGVKDNVQDELAESQERR
Ga0307413_101114322	3300031824	Rhizosphere	AQGTVKDNARDELDEAAGRGRRDREDRKEATPQEVKQPGSGGVKDNVKDEWAESQQRR
Ga0307410_108912381	3300031852	Rhizosphere	MTQGTVKDNARDELDEAAGRGRRDREDRKEATPQEVKQPGSGGVKDNVKDEWAESQQRR
Ga0307406_114108392	3300031901	Rhizosphere	AQGTVKDNAKDELDEAAGRGRRDREARKEATPQEVKQPGSGGVEDNVKDEWAESQQRS
Ga0307409_1011435671	3300031995	Rhizosphere	KDNARDELDEAAGRGRRDTEDRKEAAPAEVKQPGSGGVKDNVKDERAESQERR
Ga0307409_1015378352	3300031995	Rhizosphere	EAGGTKDNVSDELDEAAGRGRRRREDRKEAAPEEVGQPGSGGVKANVRDELAESQERRARRK
Ga0307409_1017733451	3300031995	Rhizosphere	QGTVKDNVRDELDEAAVRGRRNREDRKEATPEELKQPGSGGVKDNVQDELAESQERR
Ga0307409_1027786891	3300031995	Rhizosphere	MAQGSVKDNARDELDEAAGRGRREREDHTEVTPEEVKQPGSGGVKDNVQDEWAESQERR
Ga0307416_1001344612	3300032002	Rhizosphere	MTQGTVKDNARDELDEAAGRGRRDREDRKEATPQEVKQPGSGGVKDNVKDEWAESQERR
Ga0307414_121108022	3300032004	Rhizosphere	AQDMAQGTVKDNARDELDEAAGRGRCDREDRKEAAPQEVKQPGSGGVKDNVKDEWAESQERR
Ga0307411_108490142	3300032005	Rhizosphere	MAQGTVKDNVRDELDKAAGRGRRDREDRKGATPEEVRQPASGGVKDNVRDESAESQERR
Ga0326721_107831482	3300032080	Soil	MAQGTVKDNVRDELDEAAGRGRSEREERKEATPEEVRLPGSGGVKDNVRDEWADS
Ga0307415_1004218942	3300032126	Rhizosphere	RDELDEAAGRGRRKRDERKEAAPEEVGQPGSGGVKANVRDEWAESQGRR
Ga0307415_1008976231	3300032126	Rhizosphere	MTQGPVKDNVRDELDEAAGRGRGDREDRKEATSQEVRQPGSGGVKDNVQDEWAESQQRR
Ga0307415_1013325231	3300032126	Rhizosphere	AQDMTQGTVKDNARDELDEAAGRGRRDTEDRKEATPEEVRQPGSGGVKDNVKDEWAESQERR
Ga0307415_1022826481	3300032126	Rhizosphere	TQGNVKDNVRDELDEAAGRSRREREDRKEAALEEVRQPGSGGVKDNVRDEWAESQERS
Ga0268251_101706302	3300032159	Agave	VTDRRTGSGGTEDNVRDELDEAAERGRREGDTRKEAVEGQAGSGGVKDNVRDEWDESQER
Ga0334924_038616_76_258	3300033989	Hypolithic Biocrust	MAQGTVKDNVRDELDEAAGRGRREREERKETTPEEIARQPGSGGVKDNVRDEWADSQQRR
Ga0334915_005692_1656_1838	3300034132	Hypolithic Biocrust	MAQGTVKDNVRDELDEAAGRGRREREERKETTPEEIARQPGSGGVKDNVRDEWADSQERR
Ga0334923_088593_205_387	3300034376	Hypolithic Biocrust	MAQGTVKDNVRDELDEAAGRGRREREERKEATPEEIARQPGSGGVKDNVRDEWADSQQRR
Ga0334917_044083_2_166	3300034391	Hypolithic Biocrust	KDNVRDELDEAAGRGRREREERKEATPEEIVRQPGSGGVKDNVRDEWADSQQRR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F043687

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences