Metagenome / Metatranscriptome Family F043700

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F043700
Family Type	Metagenome / Metatranscriptome
Number of Sequences	156
Average Sequence Length	41 residues
Representative Sequence	MKKLMLLAALLAMLIVAAVPAIAQITQEEEQEGESGEVDQD
Number of Associated Samples	68
Number of Associated Scaffolds	156

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	99.36 %
% of genes near scaffold ends (potentially truncated)	99.36 %
% of genes from short scaffolds (< 2000 bps)	91.03 %
Associated GOLD sequencing projects	65
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (62.821 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (39.103 % of family members)
Environment Ontology (ENVO)	Unclassified (39.744 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.897 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 47.83% β-sheet: 0.00% Coil/Unstructured: 52.17%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 156 Family Scaffolds
PF00746	Gram_pos_anchor	4.49
PF04545	Sigma70_r4	4.49
PF00581	Rhodanese	2.56
PF00892	EamA	1.28
PF01925	TauE	0.64
PF00425	Chorismate_bind	0.64
PF00719	Pyrophosphatase	0.64
PF13561	adh_short_C2	0.64
PF00583	Acetyltransf_1	0.64
PF01019	G_glu_transpept	0.64
PF13483	Lactamase_B_3	0.64
PF03167	UDG	0.64
PF02621	VitK2_biosynth	0.64
PF01636	APH	0.64
PF00872	Transposase_mut	0.64
PF01351	RNase_HII	0.64
PF04203	Sortase	0.64
PF01497	Peripla_BP_2	0.64
PF01633	Choline_kinase	0.64
PF12172	DUF35_N	0.64
PF08240	ADH_N	0.64
PF12697	Abhydrolase_6	0.64
PF00815	Histidinol_dh	0.64
PF13231	PMT_2	0.64
PF09250	Prim-Pol	0.64
PF04185	Phosphoesterase	0.64
PF02021	UPF0102	0.64
PF07366	SnoaL	0.64
PF16864	Dimerisation2	0.64
PF02219	MTHFR	0.64

COG ID	Name	Functional Category	% Frequency in 156 Family Scaffolds
COG0141	Histidinol dehydrogenase	Amino acid transport and metabolism [E]	0.64
COG0164	Ribonuclease HII	Replication, recombination and repair [L]	0.64
COG0221	Inorganic pyrophosphatase	Energy production and conversion [C]	0.64
COG0405	Gamma-glutamyltranspeptidase	Amino acid transport and metabolism [E]	0.64
COG0614	ABC-type Fe3+-hydroxamate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.64
COG0685	5,10-methylenetetrahydrofolate reductase	Amino acid transport and metabolism [E]	0.64
COG0692	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.64
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	0.64
COG0792	Predicted endonuclease distantly related to archaeal Holliday junction resolvase, YraN/UPF0102 family	Replication, recombination and repair [L]	0.64
COG1039	Ribonuclease HIII	Replication, recombination and repair [L]	0.64
COG1427	Chorismate dehydratase (menaquinone biosynthesis, futalosine pathway)	Coenzyme transport and metabolism [H]	0.64
COG1573	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.64
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.64
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.64
COG3663	G:T/U-mismatch repair DNA glycosylase	Replication, recombination and repair [L]	0.64
COG3764	Sortase (surface protein transpeptidase)	Cell wall/membrane/envelope biogenesis [M]	0.64
COG4558	ABC-type hemin transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.64
COG4592	ABC-type Fe2+-enterobactin transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.64
COG4594	ABC-type Fe3+-citrate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.64
COG4607	ABC-type enterochelin transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.64

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.82 %
All Organisms	root	All Organisms	37.18 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.82 %
cellular organisms	root	All Organisms → cellular organisms	37.18 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.82 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	37.18 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.82 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	24.36 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.92 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.82 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	24.36 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.28 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.64 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.82 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	17.95 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.28 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.64 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → environmental samples	0.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.82 %
Rubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales	17.95 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.28 %
uncultured Gemmatimonadota bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → environmental samples → uncultured Gemmatimonadota bacterium	0.64 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.82 %
Rubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	17.95 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.28 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.64 %
uncultured Gemmatimonadota bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → environmental samples → uncultured Gemmatimonadota bacterium	0.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.82 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples	12.18 %
Rubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	3.21 %
unclassified Rubrobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae	1.92 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.28 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.64 %
uncultured Gemmatimonadota bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → environmental samples → uncultured Gemmatimonadota bacterium	0.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.82 %
uncultured Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	12.18 %
Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1.92 %
Rubrobacter xylanophilus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter xylanophilus	1.28 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.28 %
Rubrobacter radiotolerans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	0.64 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.64 %
uncultured Gemmatimonadota bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → environmental samples → uncultured Gemmatimonadota bacterium	0.64 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2209111000\|2209120504	Not Available	707	Open in IMG/M
3300000095\|LCrCPGB2aDRAFT_c059810	Not Available	660	Open in IMG/M
3300000436\|LCrCPGB2_illDRAFT_1038381	Not Available	921	Open in IMG/M
3300002568\|C688J35102_118488798	Not Available	564	Open in IMG/M
3300005562\|Ga0058697_10198941	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	906	Open in IMG/M
3300005562\|Ga0058697_10199780	Not Available	905	Open in IMG/M
3300009789\|Ga0126307_10040679	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	3609	Open in IMG/M
3300009789\|Ga0126307_10599580	Not Available	889	Open in IMG/M
3300009789\|Ga0126307_10686039	Not Available	826	Open in IMG/M
3300009789\|Ga0126307_10932602	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300009789\|Ga0126307_11576379	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	533	Open in IMG/M
3300009789\|Ga0126307_11642856	Not Available	522	Open in IMG/M
3300009840\|Ga0126313_10155185	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1732	Open in IMG/M
3300009840\|Ga0126313_10928101	Not Available	711	Open in IMG/M
3300009840\|Ga0126313_11518869	Not Available	557	Open in IMG/M
3300009840\|Ga0126313_11571530	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	547	Open in IMG/M
3300009840\|Ga0126313_11628680	Not Available	538	Open in IMG/M
3300009840\|Ga0126313_11644368	Not Available	535	Open in IMG/M
3300010036\|Ga0126305_10187089	Not Available	1307	Open in IMG/M
3300010036\|Ga0126305_10330698	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	994	Open in IMG/M
3300010036\|Ga0126305_10566403	Not Available	762	Open in IMG/M
3300010036\|Ga0126305_10935611	Not Available	593	Open in IMG/M
3300010036\|Ga0126305_10964252	Not Available	584	Open in IMG/M
3300010036\|Ga0126305_11218452	Not Available	520	Open in IMG/M
3300010037\|Ga0126304_10113339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1726	Open in IMG/M
3300010037\|Ga0126304_10219356	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	1246	Open in IMG/M
3300010037\|Ga0126304_10362666	All Organisms → cellular organisms → Bacteria	965	Open in IMG/M
3300010037\|Ga0126304_10768131	Not Available	653	Open in IMG/M
3300010037\|Ga0126304_10777078	Not Available	649	Open in IMG/M
3300010037\|Ga0126304_10948285	Not Available	586	Open in IMG/M
3300010037\|Ga0126304_10953934	Not Available	584	Open in IMG/M
3300010037\|Ga0126304_10980097	Not Available	576	Open in IMG/M
3300010037\|Ga0126304_11020781	Not Available	564	Open in IMG/M
3300010037\|Ga0126304_11228543	Not Available	514	Open in IMG/M
3300010038\|Ga0126315_10063016	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	2045	Open in IMG/M
3300010038\|Ga0126315_10082091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1817	Open in IMG/M
3300010039\|Ga0126309_10005510	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	4906	Open in IMG/M
3300010039\|Ga0126309_10010902	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3734	Open in IMG/M
3300010039\|Ga0126309_10179732	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1158	Open in IMG/M
3300010039\|Ga0126309_10315093	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	909	Open in IMG/M
3300010039\|Ga0126309_10728082	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	640	Open in IMG/M
3300010039\|Ga0126309_11088003	Not Available	542	Open in IMG/M
3300010040\|Ga0126308_10177900	All Organisms → cellular organisms → Bacteria	1358	Open in IMG/M
3300010040\|Ga0126308_10427533	Not Available	887	Open in IMG/M
3300010040\|Ga0126308_10458028	Not Available	857	Open in IMG/M
3300010040\|Ga0126308_11274002	Not Available	522	Open in IMG/M
3300010040\|Ga0126308_11312689	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	514	Open in IMG/M
3300010041\|Ga0126312_10185707	Not Available	1451	Open in IMG/M
3300010041\|Ga0126312_10710507	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	726	Open in IMG/M
3300010041\|Ga0126312_11010712	Not Available	609	Open in IMG/M
3300010042\|Ga0126314_10007734	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	5930	Open in IMG/M
3300010042\|Ga0126314_10097510	All Organisms → cellular organisms → Bacteria	1992	Open in IMG/M
3300010042\|Ga0126314_10310631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	1126	Open in IMG/M
3300010042\|Ga0126314_10738043	Not Available	723	Open in IMG/M
3300010042\|Ga0126314_11106533	Not Available	590	Open in IMG/M
3300010042\|Ga0126314_11281347	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	549	Open in IMG/M
3300010042\|Ga0126314_11429747	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	520	Open in IMG/M
3300010044\|Ga0126310_11151186	Not Available	620	Open in IMG/M
3300010044\|Ga0126310_11532584	Not Available	548	Open in IMG/M
3300010044\|Ga0126310_11854132	Not Available	503	Open in IMG/M
3300010045\|Ga0126311_10385960	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	1075	Open in IMG/M
3300010045\|Ga0126311_11510811	Not Available	563	Open in IMG/M
3300010045\|Ga0126311_11643042	Not Available	541	Open in IMG/M
3300010146\|Ga0126320_1422976	Not Available	620	Open in IMG/M
3300010166\|Ga0126306_10110257	All Organisms → cellular organisms → Bacteria	2002	Open in IMG/M
3300010166\|Ga0126306_10293256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1251	Open in IMG/M
3300010166\|Ga0126306_10650863	Not Available	842	Open in IMG/M
3300010166\|Ga0126306_11126326	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300012091\|Ga0136625_1301595	Not Available	541	Open in IMG/M
3300012184\|Ga0136610_1264306	Not Available	588	Open in IMG/M
3300012186\|Ga0136620_10282788	Not Available	721	Open in IMG/M
3300012681\|Ga0136613_10043018	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	2595	Open in IMG/M
3300013027\|Ga0170683_10130180	Not Available	652	Open in IMG/M
3300014487\|Ga0182000_10642785	Not Available	517	Open in IMG/M
3300014487\|Ga0182000_10647236	Not Available	516	Open in IMG/M
3300014488\|Ga0182001_10032440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	1306	Open in IMG/M
3300014488\|Ga0182001_10036048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1259	Open in IMG/M
3300014488\|Ga0182001_10059669	All Organisms → cellular organisms → Bacteria	1060	Open in IMG/M
3300014488\|Ga0182001_10194770	Not Available	736	Open in IMG/M
3300014488\|Ga0182001_10223691	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	707	Open in IMG/M
3300014488\|Ga0182001_10307259	Not Available	645	Open in IMG/M
3300014488\|Ga0182001_10325161	Not Available	634	Open in IMG/M
3300014488\|Ga0182001_10452556	Not Available	576	Open in IMG/M
3300014488\|Ga0182001_10455835	Not Available	575	Open in IMG/M
3300014488\|Ga0182001_10475072	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	568	Open in IMG/M
3300014488\|Ga0182001_10512507	Not Available	555	Open in IMG/M
3300014488\|Ga0182001_10582442	Not Available	534	Open in IMG/M
3300017787\|Ga0183260_10233007	Not Available	1277	Open in IMG/M
3300017789\|Ga0136617_10333465	Not Available	1239	Open in IMG/M
3300017789\|Ga0136617_10505449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	960	Open in IMG/M
3300018432\|Ga0190275_13174569	Not Available	532	Open in IMG/M
3300018465\|Ga0190269_10224990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1036	Open in IMG/M
3300018466\|Ga0190268_10055112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter xylanophilus	1605	Open in IMG/M
3300018466\|Ga0190268_11067751	Not Available	653	Open in IMG/M
3300018757\|Ga0193612_1046716	Not Available	738	Open in IMG/M
3300018875\|Ga0193608_1082284	Not Available	706	Open in IMG/M
3300018890\|Ga0193595_1005604	All Organisms → cellular organisms → Bacteria	4718	Open in IMG/M
3300018890\|Ga0193595_1030309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	1865	Open in IMG/M
3300018910\|Ga0193598_1028941	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1386	Open in IMG/M
3300018910\|Ga0193598_1105938	Not Available	647	Open in IMG/M
3300018915\|Ga0193591_1203752	Not Available	552	Open in IMG/M
3300018920\|Ga0190273_11860204	Not Available	551	Open in IMG/M
3300018933\|Ga0193614_1118054	Not Available	735	Open in IMG/M
3300018939\|Ga0193593_1024974	Not Available	1494	Open in IMG/M
3300018946\|Ga0193599_1038356	All Organisms → cellular organisms → Bacteria	1720	Open in IMG/M
3300018946\|Ga0193599_1192571	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	641	Open in IMG/M
3300018954\|Ga0193590_1183921	Not Available	514	Open in IMG/M
3300018984\|Ga0193605_1208504	Not Available	572	Open in IMG/M
3300019132\|Ga0193604_1022256	All Organisms → cellular organisms → Bacteria	994	Open in IMG/M
3300019132\|Ga0193604_1050164	Not Available	580	Open in IMG/M
3300019135\|Ga0193602_1020480	Not Available	1626	Open in IMG/M
3300019135\|Ga0193602_1054575	Not Available	947	Open in IMG/M
3300019135\|Ga0193602_1136024	Not Available	554	Open in IMG/M
3300019142\|Ga0193597_1114553	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300019142\|Ga0193597_1137606	Not Available	735	Open in IMG/M
3300019377\|Ga0190264_10053603	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → environmental samples → uncultured Gemmatimonadota bacterium	1641	Open in IMG/M
3300019377\|Ga0190264_10273749	Not Available	1000	Open in IMG/M
3300019377\|Ga0190264_11778611	Not Available	553	Open in IMG/M
3300019767\|Ga0190267_10196873	Not Available	939	Open in IMG/M
3300019767\|Ga0190267_10305396	Not Available	828	Open in IMG/M
3300019767\|Ga0190267_10603453	Not Available	680	Open in IMG/M
3300021184\|Ga0196959_10185895	Not Available	527	Open in IMG/M
3300025119\|Ga0209126_1111386	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300025119\|Ga0209126_1138749	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300025167\|Ga0209642_10402766	Not Available	766	Open in IMG/M
3300027766\|Ga0209796_10016457	All Organisms → cellular organisms → Bacteria	2250	Open in IMG/M
3300028578\|Ga0272482_10139487	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	713	Open in IMG/M
3300030496\|Ga0268240_10015473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1376	Open in IMG/M
3300030510\|Ga0268243_1008343	Not Available	1874	Open in IMG/M
3300030513\|Ga0268242_1002819	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	2568	Open in IMG/M
3300030513\|Ga0268242_1011796	Not Available	1385	Open in IMG/M
3300030513\|Ga0268242_1018938	Not Available	1146	Open in IMG/M
3300030513\|Ga0268242_1058902	Not Available	737	Open in IMG/M
3300030513\|Ga0268242_1135430	Not Available	535	Open in IMG/M
3300032159\|Ga0268251_10117723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	967	Open in IMG/M
3300032159\|Ga0268251_10350142	Not Available	626	Open in IMG/M
3300032159\|Ga0268251_10447871	Not Available	568	Open in IMG/M
3300033168\|Ga0272423_1020965	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5116	Open in IMG/M
3300034005\|Ga0334930_052784	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300034005\|Ga0334930_062918	Not Available	639	Open in IMG/M
3300034007\|Ga0334936_006748	All Organisms → cellular organisms → Bacteria	2775	Open in IMG/M
3300034007\|Ga0334936_080284	Not Available	676	Open in IMG/M
3300034131\|Ga0334911_046610	Not Available	623	Open in IMG/M
3300034131\|Ga0334911_052706	Not Available	589	Open in IMG/M
3300034135\|Ga0334929_138225	Not Available	507	Open in IMG/M
3300034137\|Ga0334943_082243	Not Available	616	Open in IMG/M
3300034173\|Ga0334925_044562	Not Available	966	Open in IMG/M
3300034173\|Ga0334925_081597	Not Available	696	Open in IMG/M
3300034174\|Ga0334932_005841	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1989	Open in IMG/M
3300034377\|Ga0334931_004018	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter xylanophilus	2765	Open in IMG/M
3300034377\|Ga0334931_005854	Not Available	2340	Open in IMG/M
3300034393\|Ga0334914_020727	Not Available	792	Open in IMG/M
3300034687\|Ga0334905_039564	Not Available	707	Open in IMG/M
3300034779\|Ga0334945_056630	Not Available	689	Open in IMG/M
3300034779\|Ga0334945_064513	Not Available	652	Open in IMG/M
3300034781\|Ga0334935_183918	Not Available	581	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.15%
Host-Associated	Host-Associated	3.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.03%
Aquatic	Environmental → Aquatic	5.13%
Plants	Host-Associated → Plants	3.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.74%
Freshwater	Environmental → Aquatic → Freshwater	5.13%
Phylloplane	Host-Associated → Plants → Phylloplane	3.85%
Rock-Dwelling (Endoliths)	Environmental → Terrestrial → Rock-Dwelling (Endoliths)	0.64%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.64%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	67.95%
Sand	Environmental → Terrestrial → Soil → Sand	14.74%
Ice	Environmental → Aquatic → Freshwater → Ice	4.49%
Soil Crust	Environmental → Terrestrial → Soil → Soil Crust	4.49%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	3.85%
Loam	Environmental → Terrestrial → Soil → Loam	2.56%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.64%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified	0.64%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.64%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	59.62%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	14.74%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	7.05%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	4.49%
Unclassified	Environmental → Terrestrial → Soil → Soil Crust → Unclassified	4.49%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	3.85%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.64%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.64%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.64%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.64%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified	0.64%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.64%

Habitat	Taxonomy	Distribution
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	39.10%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	14.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.05%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	6.41%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	4.49%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	3.85%
Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust	2.56%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	1.92%
Hypolithic Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust	1.92%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Soil	0.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.64%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.64%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.64%
Rock	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock	0.64%
Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Rock	0.64%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2209111000	Soil microbial communities from Colorado Plateau, Greene Butte sample - Dark Crust, Colorado Plateau, Green Butte	Environmental	Open in IMG/M
3300000095	Soil microbial communities from Colorado Plateau, Green Butte sample - Light Crust, Colorado Plateau, Green Butte 2	Environmental	Open in IMG/M
3300000436	Soil microbial communities from Colorado Plateau, Greene Butte sample - Light Crust, Colorado Plateau, Green Butte	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010146	Soil microbial communities from California, USA to study soil gas exchange rates - JR-CA-SND metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300012091	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ483 (23.06)	Environmental	Open in IMG/M
3300012184	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ134 (22.06)	Environmental	Open in IMG/M
3300012186	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ416 (21.06)	Environmental	Open in IMG/M
3300012681	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ272 (21.06)	Environmental	Open in IMG/M
3300013027	Gypsum rock hypoendolithic microbial communities from the Atacama Desert, Chile - Monturaqui	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300014488	Bulk soil microbial communities from Mexico - San Felipe (SF) metaG	Environmental	Open in IMG/M
3300017787	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ497 (22.06) (version 2)	Environmental	Open in IMG/M
3300017789	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018757	Soil crust microbial communities from Colorado Plateau, Utah, USA - mid-late stage, 42 hrs after wetting v1	Environmental	Open in IMG/M
3300018875	Soil crust microbial communities from Colorado Plateau, Utah, USA - mid-late stage, 49.5 hrs after wetting v1	Environmental	Open in IMG/M
3300018890	Soil crust microbial communities from Colorado Plateau, Utah, USA - mid-late stage, bundles v1	Environmental	Open in IMG/M
3300018910	Soil crust microbial communities from Colorado Plateau, Utah, USA - earlymid stage, 18 hrs after wetting v1	Environmental	Open in IMG/M
3300018915	Soil crust microbial communities from Colorado Plateau, Utah, USA - late stage, 0 min after wetting v1	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300018933	Soil crust microbial communities from Colorado Plateau, Utah, USA - earlymid stage, 42 hrs v1	Environmental	Open in IMG/M
3300018939	Soil crust microbial communities from Colorado Plateau, Utah, USA - midlate stage, 9 hrs after wetting v1	Environmental	Open in IMG/M
3300018946	Soil crust microbial communities from Colorado Plateau, Utah, USA - mid-late stage, 0 min after wetting v1	Environmental	Open in IMG/M
3300018954	Soil crust microbial communities from Colorado Plateau, Utah, USA - early stage, 3 min after wetting v1	Environmental	Open in IMG/M
3300018984	Soil crust microbial communities from Colorado Plateau, Utah, USA - earlymid stage, 9 hrs after wetting v1	Environmental	Open in IMG/M
3300019132	Soil crust microbial communities from Colorado Plateau, Utah, USA - early-mid stage, 49.5 hrs after wetting v1	Environmental	Open in IMG/M
3300019135	Soil crust microbial communities from Colorado Plateau, Utah, USA - midlate stage, 18 hrs after wetting v1	Environmental	Open in IMG/M
3300019142	Soil crust microbial communities from Colorado Plateau, Utah, USA - mid late stage, 3 min after wetting v1	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300021184	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_20	Environmental	Open in IMG/M
3300025119	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_1 (SPAdes)	Environmental	Open in IMG/M
3300025167	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_2 (SPAdes)	Environmental	Open in IMG/M
3300027766	Agave microbial communities from Guanajuato, Mexico - Or.Sf.rz (SPAdes)	Host-Associated	Open in IMG/M
3300028578	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT160D0	Environmental	Open in IMG/M
3300030496	Bulk soil microbial communities from Mexico - Penjamo (Pe) metaG (v2)	Environmental	Open in IMG/M
3300030510	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)	Environmental	Open in IMG/M
3300030513	Bulk soil microbial communities from Mexico - San Felipe (SF) metaG (v2)	Environmental	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300033168	Rock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud	Environmental	Open in IMG/M
3300034005	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 26HNS	Environmental	Open in IMG/M
3300034007	Biocrust microbial communities from Mojave Desert, California, United States - 32SMC	Environmental	Open in IMG/M
3300034131	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 7HMS	Environmental	Open in IMG/M
3300034135	Biocrust microbial communities from Mojave Desert, California, United States - 25HNC	Environmental	Open in IMG/M
3300034137	Biocrust microbial communities from Mojave Desert, California, United States - 39SMC	Environmental	Open in IMG/M
3300034173	Biocrust microbial communities from Mojave Desert, California, United States - 21HNC	Environmental	Open in IMG/M
3300034174	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 28HNS	Environmental	Open in IMG/M
3300034377	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 27HNS	Environmental	Open in IMG/M
3300034393	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 10HMS	Environmental	Open in IMG/M
3300034687	Soil microbial communities from Mojave Desert, California, United States - 1NOC	Environmental	Open in IMG/M
3300034779	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 41SMS	Environmental	Open in IMG/M
3300034781	Biocrust microbial communities from Mojave Desert, California, United States - 31SMC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2209124697	2209111000	Soil	MKKLMLLAALLAMLAVAAVPAIAQIGQEAEQESESGEVDQSFT
LCrCPGB2aDRAFT_0598101	3300000095	Soil	MKKLMLLAALLAMLALAAVPAIAQIGQEGEQETESG
LCrCPGB2_illDRAFT_10383813	3300000436	Soil	MKKLMLLAALLAMLALAAVPAIAQIGQEGEQESESGEVDQSFTVTS
C688J35102_1184887982	3300002568	Soil	VEKRRRKALKKLVLVAALLAMVLATAIPAIAQVTQTPEQGVES
Ga0058697_101989411	3300005562	Agave	MRKLMLLAALLAMLAVAAIPAIGQVTQEGEQEGESGELNQTSSQ
Ga0058697_101997801	3300005562	Agave	MRKFVLLAALLAMLIVAAVPAIAQIDQESEQETESGEVDQS
Ga0126307_100406791	3300009789	Serpentine Soil	MKKLMLLAALLAMLIVAAVPAIAQITQEEEQEGESGEVDQD
Ga0126307_105995801	3300009789	Serpentine Soil	LKKLMLLAALLAMLIVAAVPAIAQITQEEEQEGESGEVDQD
Ga0126307_106860391	3300009789	Serpentine Soil	MLLAALLAMLALAAVPVIAQVTQEEEQEGESAELNQ
Ga0126307_109326022	3300009789	Serpentine Soil	MMLAALLAMLALAAIPAIAQVTQEDEQEGESGELDQSF
Ga0126307_115763792	3300009789	Serpentine Soil	MLLAVLLAMLAVAAIPAIGQVTQEGEQEGESAELNQTSEQTQS
Ga0126307_116428561	3300009789	Serpentine Soil	MKKLMLLAALLAMLAMAAIPAIAQVTQEGEQEGESADI
Ga0126313_101551855	3300009840	Serpentine Soil	MKKLMLLAALLAMLALAAIPAIAQVTQENEQDAESGELNQDFSVT
Ga0126313_109281011	3300009840	Serpentine Soil	VKKLMLLAALLAMLALAAVPVIAQVTQEEEQEGESAEL
Ga0126313_115188692	3300009840	Serpentine Soil	MKKLMLLTALLAMLALAAVPAIAQISQESEQEGESG
Ga0126313_115715302	3300009840	Serpentine Soil	LKKLMLLAALLAMLAVAAIPAIAQVTEDAEQEGESGEL
Ga0126313_116286801	3300009840	Serpentine Soil	VKKLMLLAALLAMLALAAVPVIAQVTQEEEQEGES
Ga0126313_116443681	3300009840	Serpentine Soil	MRKLMLLAALLAMLAVAAIPAIAQVTQEEEQEAESAELDQTF
Ga0126305_101870892	3300010036	Serpentine Soil	MLLAALLAMLAVAAIPAIAQVTQEDEQEGESADIDQDFSA
Ga0126305_103306982	3300010036	Serpentine Soil	MLLAALLAMLAVAAIPAIAQVTQEGEQEGESAELSQDS
Ga0126305_105664032	3300010036	Serpentine Soil	LKKLMLLAALLAMLALAAVPVIAQVTQEEEQEGESAELD
Ga0126305_109356111	3300010036	Serpentine Soil	MKKLMLLAALLAMLAVAAIPAIAQISQEDEQEGESGELD
Ga0126305_109642521	3300010036	Serpentine Soil	LKKLILLAALLAMLAVAAIPAIAQISQEEEQEGESGE
Ga0126305_112184522	3300010036	Serpentine Soil	MMLAALLAVVALAAIPAIAQVSQESEQEGESGELDQ
Ga0126304_101133393	3300010037	Serpentine Soil	LKKVMLLAALLAIVLIAAAPAFAQVEQEDEQEGESGEVDQSFEISGSGSN
Ga0126304_102193561	3300010037	Serpentine Soil	VKKLMLLAALLAMLALAAVPVIAQVTQEEEQEGESGELDQS
Ga0126304_103626661	3300010037	Serpentine Soil	MKKLMLVAALLAMLALAAVPAIAQISQETEQDAESGE
Ga0126304_107681311	3300010037	Serpentine Soil	MLLAALLAIVLIAAAPAFAQVEQEDEQEGESGEVDQS
Ga0126304_107770781	3300010037	Serpentine Soil	MKKLMLLAALLAMVAVAAIPAIAQVTQEEEQEGESGELNQSFTV
Ga0126304_109482851	3300010037	Serpentine Soil	MRKFMLLAALLAMLAVAAIPAVAQVTQEDEQEAESGDVDQSFDVSQTGD
Ga0126304_109539341	3300010037	Serpentine Soil	MLLAALLAIVLIAAAPAFAQVEQEDEQEGESGEVDQSFEVS
Ga0126304_109800971	3300010037	Serpentine Soil	MKKLMLLAALLAMLALAAVPVIAQVTQEEEQEGES
Ga0126304_110207811	3300010037	Serpentine Soil	MRKLMLLAALLAMAMVLMAALPAIAQVTQEDEQEGESA
Ga0126304_112285431	3300010037	Serpentine Soil	MLLAALLALLALAVVPALAQVSEDSEQEGESGDLDQSFTATGGGD
Ga0126315_100630162	3300010038	Serpentine Soil	MKKLMLLAALLAMLALAAVPVIAQVTQEEEQEGESG
Ga0126315_100820911	3300010038	Serpentine Soil	LKKVMLLAALLAIVLIAAAPAFAQVEQEDEQEGES
Ga0126309_100055109	3300010039	Serpentine Soil	VSAREKENELKKLMLLAALLAMVIVAAVPAIAQIEQDNEQEADSG
Ga0126309_100109021	3300010039	Serpentine Soil	LKKLMLLAALLAMLVVAAVPAIAQIGQEAEQETESGE
Ga0126309_101797323	3300010039	Serpentine Soil	MRKLMLLAALLAMLALAAVPVIAQVSQEEEQEGES
Ga0126309_103150931	3300010039	Serpentine Soil	MKKLMLRAALLAMLALAAIPAIAQVTQETEQEGESADLDQDFSATQ
Ga0126309_107280822	3300010039	Serpentine Soil	MEILTQGGKKLKKMMLLAMLLAMVIVAAVPAIAQIEQEQEQEADSGEVNQSFDVTGG
Ga0126309_110880031	3300010039	Serpentine Soil	MLLAALLAMLALAAVPVIAQVTQEEEQEGESAELNQDFSATQE
Ga0126308_101779002	3300010040	Serpentine Soil	MLLAALLAIVLIAAAPAFAQVEQEDEQEGESGEVDQSFEVSG
Ga0126308_104275332	3300010040	Serpentine Soil	MLLAALLAVLALAAIPAIAQVSQESEQEGESGELDQSFEVSSSGD
Ga0126308_104580281	3300010040	Serpentine Soil	VKKLMLLAALLAMLAVAAIPAIGQVTQEDEQEGESAELDQSFEVSSS
Ga0126308_112740021	3300010040	Serpentine Soil	MLLAALLAMLALAAVPVIAQVTQEEEQEGESAELSQDF
Ga0126308_113126891	3300010040	Serpentine Soil	LKKLMLLAALLAMLAVAAIPAIGQVTQEGEQEGESAELNQTS
Ga0126312_101857073	3300010041	Serpentine Soil	MMLAALLAMLALAAIPAIAQVSQESEQEGESGELDQSFEVSS
Ga0126312_107105072	3300010041	Serpentine Soil	VLKKLMLLAALLAMLALAAVPVIAQVTQEGEQEGESAEL
Ga0126312_110107121	3300010041	Serpentine Soil	MKKLMLLTALLAMLALAAVPAIAQISQESEQEGESGELDQSF
Ga0126314_100077341	3300010042	Serpentine Soil	MLLAALLAIVLIAAAPAFAQVEQEDEQEGESGEVDQSFEVSGSG
Ga0126314_100975103	3300010042	Serpentine Soil	MKKLMLLAVLLAMLAVAAIPAIAQVTQEGEQEGESAELSQDSSAT
Ga0126314_103106312	3300010042	Serpentine Soil	MLLAALLAMLAVAAIPAIGQVTQEGEQEGESAELDQTS
Ga0126314_107380432	3300010042	Serpentine Soil	MKKLMLLAALLAMLALAAIPAIAQVTQENEQDAESGELNQDFSV
Ga0126314_111065332	3300010042	Serpentine Soil	MRKLMVLAALLAVLALAAIPAIAQVTQESEQEGESGELDQSFT
Ga0126314_112813472	3300010042	Serpentine Soil	MLLAVLLAMLAVAAIPAIGQVTQEGEQEGESAELNQTSEQTQSGD
Ga0126314_114297471	3300010042	Serpentine Soil	LKKLMLLAALLAVLALAAIPAIAQVTQEGEQEGES
Ga0126310_111511861	3300010044	Serpentine Soil	MKKLMLLAALLTLLAVAAVPAIAQIGQEGEQETESGDVDQ
Ga0126310_115325841	3300010044	Serpentine Soil	MKKLMLLAALLAMLALAAIPAIAQVTQEGEQEGESAEL
Ga0126310_118541321	3300010044	Serpentine Soil	MKKLMLLAALLAMLALAAIPAIAQVTQENEQDAESGELNQDFSVTGSG
Ga0126311_103859601	3300010045	Serpentine Soil	MLLAALLAVLALAAIPAIAQVTQEGEQEGESAELDQTSSQT
Ga0126311_115108111	3300010045	Serpentine Soil	MKKLVLLTALLGMLALAAIPAIAQVSQETEQEGESGELDQS
Ga0126311_116430421	3300010045	Serpentine Soil	LKKLMLLAALLAMLAVAAIPAIAQVTQEEEQEGESGE
Ga0126320_14229761	3300010146	Soil	MLLAALLAMLALAVVPALAQVSQENEQGTDSGDLNQQSTVTG
Ga0126306_101102573	3300010166	Serpentine Soil	LKKLILLAAMLAMVLVASAPALGQVTQEDEQEGESGEVDQSFEVSGGGSNG
Ga0126306_102932563	3300010166	Serpentine Soil	MKKLMLLAAVLAMLVVAAVPAIAQVSGGLGQESESEDLETNF
Ga0126306_106508631	3300010166	Serpentine Soil	MRKLMMLAAMLAVAALAAIPAIAQVTQEDEQEGESGELDQSF
Ga0126306_111263262	3300010166	Serpentine Soil	MKKLMLLAALLAMLALAAVPVIAQVTQEEEQEGESGELDQSFSA
Ga0136625_13015952	3300012091	Polar Desert Sand	MMLAALLAMLVVAAVPAIAQVGQDFEQDGESGDLEQT
Ga0136610_12643061	3300012184	Polar Desert Sand	LKKIMLLAALLAMLVVAAVPALAQVTNEFEQDSESGEIDQGFTVTDEGSNGNQ
Ga0136620_102827881	3300012186	Polar Desert Sand	LKKVMLLAALLAMLVIAAVPAIAQVTNDFDADSDSGEVEQEFTVTGEGSNGNQ
Ga0136613_100430181	3300012681	Polar Desert Sand	LKKIMMLAAMLAIVLTAAAPAMAQVEQAFDQDTDSGDVDQTFTVTGGGSN
Ga0170683_101301801	3300013027	Rock	MKKIMLLAALLAMLVVAAVPAIAQVEQDFEQDTDSGDVEQTFTVTG
Ga0182000_106427851	3300014487	Soil	MLLAALLAMLALAAVPVIAQVTQEDEQEGESAELNQDFSATQEGD
Ga0182000_106472361	3300014487	Soil	VKKLMLLAALLAMLAVAAIPAIGQVTQEEEQEGESA
Ga0182001_100324401	3300014488	Soil	MLLAALLAIVLIAAAPAFAQVEQEDEQEGESGEVDQ
Ga0182001_100360482	3300014488	Soil	LKKLMMLAALLAMLALAAIPAIAQVTQENEQEGESADLDQSFDVSS
Ga0182001_100596691	3300014488	Soil	MMLAALLAMLALAAIPAIAQVTQENEQEGESADLDQSFDVSS
Ga0182001_101947702	3300014488	Soil	MKKLMLLAALLAMLAVAAIPAIGQVTQEEEQEGESAE
Ga0182001_102236911	3300014488	Soil	MKKLMLMAAILAMAVIAAVPAIAQITQEGEQEAESGD
Ga0182001_103072591	3300014488	Soil	MLLAALLVIVLIAAAPAFAQVEQEDEQEGESGEVDQSFEV
Ga0182001_103251611	3300014488	Soil	LKKLMLLAALLAMLAVAAIPAIAQVTQESEQEGESGDLDQTFEVTGS
Ga0182001_104525561	3300014488	Soil	MKKLMLLAALLAMLAVAAIPAIAQVTQENEQEGES
Ga0182001_104558351	3300014488	Soil	MKKLMLLAALLAMLIVAAVPAIAQIGQESEQETESGEVDQSFEVAGSG
Ga0182001_104750722	3300014488	Soil	LKKLMLLAALLAMLAVAAVPAIAQISQEGEQEGESADIN
Ga0182001_105125071	3300014488	Soil	VTRIISWKKMMLLAALLAMLIVAAVPAIAQIGQEAE
Ga0182001_105824421	3300014488	Soil	MRKLMLLAALLAMLALAAVPVIAQVSQEDEQEGESGELNQDFKVT
Ga0183260_102330073	3300017787	Polar Desert Sand	LKKVMLLAALLAMLVVAAVPAIAQVEQGFDQESESGDLD
Ga0136617_103334652	3300017789	Polar Desert Sand	LKKLMLLAALLAMVVVAAVPAIAQVEQDFDQDTDSGDVDQEFTVTGEGS
Ga0136617_105054492	3300017789	Polar Desert Sand	LKKLMLLAVLLAMVVVAAVPAIAQVEQDFDQDTDSGDVDQEFTVTGEGS
Ga0190275_131745691	3300018432	Soil	MKKLMLLAALLAMLIVAAVPAIAQIGQEAEQEGESG
Ga0190269_102249902	3300018465	Soil	MRKLILLAAVLAMVIVAAVPAIAQIGQESEQETESGEVDQSFTVTS
Ga0190268_100551121	3300018466	Soil	LKKLMLLAALLAMLALAAVPVIAQVTQEEEQEGESGELDQSFE
Ga0190268_110677512	3300018466	Soil	MKKLMLLAGLLGMRARAAIPAIAQVSQEDEQEAESGDLDQSFTV
Ga0193612_10467161	3300018757	Soil	LKKMIMLAALLAMLVVAAVPAIAQVGQDFEQETESGEVEQSFEISSEG
Ga0193608_10822841	3300018875	Soil	MKKLMLLAALLAMLVLAAVPAIAQIGQEGEQESESGDISQESSAT
Ga0193595_10056049	3300018890	Soil	MLAALLAMLVVAAIPAIAQVEQGFEQETESGEVEQSFEVSGE
Ga0193595_10303091	3300018890	Soil	MKKMMMLAALLAMLVVAAVPAIAQVGQDFEQETESG
Ga0193598_10289411	3300018910	Soil	VTRIISWKKLMLLAALLAMLIVAAVPAIAQIGQEAEQEGESGEVDQS
Ga0193598_11059382	3300018910	Soil	MKKLMLLAALLAMLVVAAVPAIAQIGQEGEQEAER
Ga0193591_12037522	3300018915	Soil	MKKLMLLAALLAMLALAAIPAIAQVTQEDEQEGESGEI
Ga0190273_118602041	3300018920	Soil	LKKMMLLAALLAMLVVAAIPAIAQVEQPFEQEADSGEVDQSFEVTGGG
Ga0193614_11180541	3300018933	Soil	MRKLMLLAALLAMLVLAAVPAIAQIGQEAEQESESGEVDQSFTVTGEGD
Ga0193593_10249741	3300018939	Soil	LKKMMLLAALLAMLVVAAVPAIAQVGQDFEQETESGDLEQSSE
Ga0193599_10383561	3300018946	Soil	LKKVVRLAAILAMLIVAAAPAMAQVEQDFDQDSDSGEVDQ
Ga0193599_11925712	3300018946	Soil	LKKLMLLAALLAMLVVAAVPAIAQIGQEAEQEAESGEL
Ga0193590_11839211	3300018954	Soil	LKKLMLLAALLAMLVVAAAPAIAQIGQEAEQEAES
Ga0193605_12085041	3300018984	Soil	LKKLMLLAALLAMLVVAAVPAIAQIGQEGEQEGESGEVSQD
Ga0193604_10222561	3300019132	Soil	LKKLMLLAALLGMLAVAAIPAIAQIGQESEQEAQSGDVDQSF
Ga0193604_10501641	3300019132	Soil	MKKLMLLAALLAMLIVAAVPAIAQIGQEAEQEGESGE
Ga0193602_10204801	3300019135	Soil	MKKLMLLAALLAMVVVAAVPAIAQVEQGFDQESESGEVEQSFT
Ga0193602_10545751	3300019135	Soil	LKKMIMLAALLAMLVVAAVPAIAQVGQDFEQETESGEVEQ
Ga0193602_11360241	3300019135	Soil	LKKMMMLAALLAMLVVAAVPAIAQVGNDFEQESDSGEVEQEFVVTG
Ga0193597_11145534	3300019142	Soil	LKKVMMLAALLAMLVVAAIPAIAQVEQGFEQETESGEVEQ
Ga0193597_11376062	3300019142	Soil	LKKMIMLAALLAMLVVAAVPAIAQVGQDFEQETESGEVE
Ga0190264_100536032	3300019377	Soil	MKKLMLLAALLAMLIVAAVPAIAQIGQESEQETESADVNQSFTVS
Ga0190264_102737491	3300019377	Soil	MKKLMMLAALLAMLAVAAIPAIAQVTQETEQEGESGDL
Ga0190264_117786111	3300019377	Soil	LKKLMLLAALLAMLIVAAVPAIAQIGQEGEQESESGEVGQDF
Ga0190267_101968731	3300019767	Soil	LKKLMLLAALLAMLAVAAIPAIAQISQEEEQEGESGELSQDF
Ga0190267_103053961	3300019767	Soil	MKKLMLLAALLAMVVVAAVPAIAQIGQEGEQDAESGDLNQSVNITGG
Ga0190267_106034531	3300019767	Soil	VKKLMLLAALLAMLALAAVPVIAQVTQEEEQEGESGELDQSF
Ga0196959_101858952	3300021184	Soil	MKKLMLLAALLAMLIVAAVPAIAQIGQEAEQESESGELDQSA
Ga0209126_11113862	3300025119	Soil	MKKLMLLAALLAMLAVAAIPAIAQVTQESEQEAESGDLDQSFTV
Ga0209126_11387492	3300025119	Soil	LKKLMMLAALLAMLAVAAIPAIAQVGQGTEQEGESGELDQTFE
Ga0209642_104027662	3300025167	Soil	MKKLMLLAALLAMLAVAAIPAIAQVTQESEQEAES
Ga0209796_100164571	3300027766	Agave	MRKLMLLAALLAMLALAAVPVIAQVSQEDEQEGESGELN
Ga0272482_101394872	3300028578	Soil	LKKLMLLAALLAMLVVAAVPAIAQIGQEAEQETESGEVDQ
Ga0268240_100154731	3300030496	Soil	MKKLMLLASLLAMLAVAAIPAIAQVTQEEEQEGESAELDQTFTVTST
Ga0268243_10083431	3300030510	Soil	MRKLMVLAALLAVLALAAIPAIAQVSQESEQDADSGDLNQSSKVTQT
Ga0268242_10028194	3300030513	Soil	MKKLVLLAALLAMLAVAAVPAIAQISQETEQDAESGE
Ga0268242_10117962	3300030513	Soil	MKKLMLLAALLAMLAVAAIPAIAQVTQEEEQEAESAELNQTFTV
Ga0268242_10189382	3300030513	Soil	VKKLMLLAALLAMLALAAVPVIAQVTQEDEQEGESGELDQTFEVT
Ga0268242_10589021	3300030513	Soil	LKKLMLLAALLVIVLIAAAPAFAQVEQEDEQEGESGEVDQSFEVS
Ga0268242_11354301	3300030513	Soil	MKKLMLLAALLAMLAVAAVPVIAQVSQEDEQEGESAEIDQNFTATQS
Ga0268251_101177231	3300032159	Agave	LKKLMLLAALLAMLALAAVPVIAQVSQEGEQEGESAEL
Ga0268251_103501421	3300032159	Agave	LKKLMLLAALLAIVLIAAAPAFAQVEQEDEQEGESGE
Ga0268251_104478711	3300032159	Agave	MKKLMLLAALLAMLIVAAVPAIAQIGQEGEQEGESGDVD
Ga0272423_10209658	3300033168	Rock	MLLATLLAMLAVAAVLALAQITQPNEQSNESGDSSQTSP
Ga0334930_052784_3_131	3300034005	Sub-Biocrust Soil	MLLAALLAMLIVAAVPAIAQIGQEGEQETESGDISQESSATQE
Ga0334930_062918_1_105	3300034005	Sub-Biocrust Soil	LKKLMLLAALLAMLIVAVVPAIAQVSQEGEQETES
Ga0334936_006748_2655_2774	3300034007	Biocrust	MKKLMLLAALLAMLVVAAVPAIAQIGQEGEQESESGEADQ
Ga0334936_080284_2_127	3300034007	Biocrust	MKKLMLLAALLAMLIVAVVPAIAQVSEEGEQETESGEVDQSF
Ga0334911_046610_492_623	3300034131	Sub-Biocrust Soil	MLLAALLAMLAVAAVPVIAQVTQEEEQEGESAEIDQTFSAAQEG
Ga0334911_052706_482_589	3300034131	Sub-Biocrust Soil	MKKLMLLAALLAMLIVAAVPAIAQIGQEGEQETESG
Ga0334929_138225_1_138	3300034135	Hypolithic Biocrust	MKKLMLLAALLAMLVVAAVPAIAQIGQEGEQETESGEADQSFTVTS
Ga0334943_082243_483_614	3300034137	Biocrust	MKKLMLLAALLAMLIVAAVPAIAQIGQESEQETESGDVDQSFEV
Ga0334925_044562_842_964	3300034173	Hypolithic Biocrust	MLLAALLAMLIVAVVPAIAQIDQESEQEGESGEVDQSFTVT
Ga0334925_081597_588_695	3300034173	Hypolithic Biocrust	MKKLMLLAALLAMLALAAVPAIAQIGQEGEQESESG
Ga0334932_005841_1867_1989	3300034174	Sub-Biocrust Soil	MRRLILLAAMLAIVLFASGPAVAQVEQESEQEGESGEVGQS
Ga0334931_004018_3_140	3300034377	Sub-Biocrust Soil	LKKLMLLAALLAMLVLAAVPVVAQVTQEEEQEGESGELDQSFEVTG
Ga0334931_005854_1_120	3300034377	Sub-Biocrust Soil	MKKLMVLVAMLAMTLIVAAPAIAQIDQESEQEAESGEVDQ
Ga0334914_020727_688_792	3300034393	Sub-Biocrust Soil	MKKLMLLAAVLAMVVVAAVPAIAQIDQESEQETES
Ga0334905_039564_1_120	3300034687	Soil	MLLAALLAMLAVAAIPAIAQVTQEGEQEGESADLNQDSSS
Ga0334945_056630_3_131	3300034779	Sub-Biocrust Soil	MKKLMLLAALLAMLIVAAVPAIAQIGQESEQETESGEVDQSFE
Ga0334945_064513_3_146	3300034779	Sub-Biocrust Soil	MKKLMVLVAMLAMTLIVAAPAIAQIDQESEQEAESGEVDQSFEVSSSG
Ga0334935_183918_430_579	3300034781	Biocrust	MKKLMLLAALLAMLIVAVVPAIAQVSEEGEQETESGEVDQSFEVAGSGDN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F043700

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences