Metagenome / Metatranscriptome Family F045962

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F045962
Family Type	Metagenome / Metatranscriptome
Number of Sequences	152
Average Sequence Length	45 residues
Representative Sequence	MKLLGLDHIGIVVRDIDETIARAGDTVDGRALGERILAGDIDLQFL
Number of Associated Samples	94
Number of Associated Scaffolds	152

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	99.34 %
% of genes near scaffold ends (potentially truncated)	98.03 %
% of genes from short scaffolds (< 2000 bps)	91.45 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (62.500 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (29.605 % of family members)
Environment Ontology (ENVO)	Unclassified (38.816 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (55.921 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 25.68% β-sheet: 0.00% Coil/Unstructured: 74.32%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.29
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.29
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 152 Family Scaffolds
PF13561	adh_short_C2	17.11
PF13411	MerR_1	13.82
PF05199	GMC_oxred_C	5.92
PF12680	SnoaL_2	5.26
PF00106	adh_short	4.61
PF00376	MerR	2.63
PF00440	TetR_N	1.97
PF12852	Cupin_6	1.97
PF13577	SnoaL_4	1.97
PF12833	HTH_18	1.97
PF13560	HTH_31	1.32
PF00730	HhH-GPD	0.66
PF06441	EHN	0.66
PF17164	DUF5122	0.66
PF00196	GerE	0.66
PF12802	MarR_2	0.66
PF13376	OmdA	0.66
PF13592	HTH_33	0.66
PF13412	HTH_24	0.66
PF09278	MerR-DNA-bind	0.66
PF00903	Glyoxalase	0.66
PF13604	AAA_30	0.66
PF08388	GIIM	0.66
PF03640	Lipoprotein_15	0.66
PF05163	DinB	0.66
PF00378	ECH_1	0.66
PF01053	Cys_Met_Meta_PP	0.66
PF00069	Pkinase	0.66
PF02738	MoCoBD_1	0.66
PF07730	HisKA_3	0.66
PF10009	DUF2252	0.66
PF04185	Phosphoesterase	0.66
PF07366	SnoaL	0.66

COG ID	Name	Functional Category	% Frequency in 152 Family Scaffolds
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	5.92
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	2.63
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	0.66
COG0122	3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase	Replication, recombination and repair [L]	0.66
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	0.66
COG0177	Endonuclease III	Replication, recombination and repair [L]	0.66
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.66
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.66
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.66
COG0596	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold	Coenzyme transport and metabolism [H]	0.66
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.66
COG0789	DNA-binding transcriptional regulator, MerR family	Transcription [K]	0.66
COG1059	Thermostable 8-oxoguanine DNA glycosylase	Replication, recombination and repair [L]	0.66
COG1194	Adenine-specific DNA glycosylase, acts on AG and A-oxoG pairs	Replication, recombination and repair [L]	0.66
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	0.66
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	0.66
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	0.66
COG2231	3-Methyladenine DNA glycosylase, HhH-GPD/Endo3 superfamily	Replication, recombination and repair [L]	0.66
COG2318	Bacillithiol/mycothiol S-transferase BstA/DinB, DinB/YfiT family (unrelated to E. coli DinB)	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.66
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.66
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.66
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	0.66
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.66
COG4100	Cystathionine beta-lyase family protein involved in aluminum resistance	Inorganic ion transport and metabolism [P]	0.66
COG4315	Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown)	Function unknown [S]	0.66
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.66
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	0.66

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	63.16 %
Unclassified	root	N/A	36.84 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.50 %
Unclassified	root	N/A	36.84 %
Viruses	superkingdom	All Organisms → Viruses	0.66 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.50 %
Unclassified	root	N/A	36.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.84 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	29.61 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.63 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.66 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.66 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.84 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	23.03 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	5.92 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.66 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.66 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.66 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.66 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.84 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	17.76 %
Ktedonobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria	3.29 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	1.97 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.66 %
Vibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales	0.66 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.66 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.66 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.84 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	5.92 %
Ktedonobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales	3.29 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.97 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.97 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.66 %
Vibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae	0.66 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.66 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.66 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.66 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.66 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.66 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.66 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.84 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	5.92 %
Ktedonobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae	3.29 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.97 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.97 %
Photobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Photobacterium	0.66 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.66 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.66 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.66 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.66 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.66 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.66 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.66 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.84 %
Streptacidiphilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus	3.95 %
Ktedonobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter	3.29 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.97 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.97 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.97 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.66 %
Asanoa	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Asanoa	0.66 %
Photobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Photobacterium	0.66 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.66 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.66 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.66 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.66 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.66 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.84 %
Streptacidiphilus anmyonensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus → Streptacidiphilus anmyonensis	3.95 %
Ktedonobacter racemifer	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → Ktedonobacter racemifer	1.97 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.97 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.97 %
unclassified Ktedonobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → unclassified Ktedonobacter	0.66 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	0.66 %
Actinomadura madurae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura madurae	0.66 %
Asanoa iriomotensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Asanoa → Asanoa iriomotensis	0.66 %
Streptomyces corallincola	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces corallincola	0.66 %
Photobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Photobacterium	0.66 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.66 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.66 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.66 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.66 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.66 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.84 %
Streptacidiphilus anmyonensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus → Streptacidiphilus anmyonensis	3.95 %
Ktedonobacter racemifer	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → Ktedonobacter racemifer	1.97 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.97 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.97 %
Ktedonobacter sp. 13_1_20CM_4_53_11	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → unclassified Ktedonobacter → Ktedonobacter sp. 13_1_20CM_4_53_11	0.66 %
Streptomyces sp. GbtcB6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. GbtcB6	0.66 %
Actinomadura madurae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura madurae	0.66 %
Asanoa iriomotensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Asanoa → Asanoa iriomotensis	0.66 %
Streptomyces corallincola	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces corallincola	0.66 %
Photobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Photobacterium	0.66 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.66 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.66 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.66 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.66 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.66 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.66 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_101151482	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter	664	Open in IMG/M
3300002914\|JGI25617J43924_10166872	Not Available	743	Open in IMG/M
3300005093\|Ga0062594_100399097	Not Available	1110	Open in IMG/M
3300005329\|Ga0070683_100356681	All Organisms → cellular organisms → Bacteria	1392	Open in IMG/M
3300005340\|Ga0070689_100103316	All Organisms → cellular organisms → Bacteria	2258	Open in IMG/M
3300005341\|Ga0070691_10192374	Not Available	1068	Open in IMG/M
3300005355\|Ga0070671_101315650	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300005355\|Ga0070671_101542874	Not Available	588	Open in IMG/M
3300005356\|Ga0070674_101552146	Not Available	596	Open in IMG/M
3300005434\|Ga0070709_10241838	All Organisms → cellular organisms → Bacteria	1296	Open in IMG/M
3300005434\|Ga0070709_11192348	Not Available	611	Open in IMG/M
3300005435\|Ga0070714_100897366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces corallincola	860	Open in IMG/M
3300005435\|Ga0070714_101068076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus → Streptacidiphilus anmyonensis	786	Open in IMG/M
3300005435\|Ga0070714_101581307	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300005435\|Ga0070714_101978977	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300005435\|Ga0070714_102065362	Not Available	555	Open in IMG/M
3300005437\|Ga0070710_11079201	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300005437\|Ga0070710_11300462	Not Available	541	Open in IMG/M
3300005439\|Ga0070711_100332536	All Organisms → cellular organisms → Bacteria	1216	Open in IMG/M
3300005440\|Ga0070705_100436834	All Organisms → cellular organisms → Bacteria → Proteobacteria	978	Open in IMG/M
3300005445\|Ga0070708_100435563	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → unclassified Ktedonobacter → Ktedonobacter sp. 13_1_20CM_4_53_11	1237	Open in IMG/M
3300005445\|Ga0070708_101152831	All Organisms → cellular organisms → Bacteria	725	Open in IMG/M
3300005445\|Ga0070708_101282322	Not Available	684	Open in IMG/M
3300005467\|Ga0070706_100102826	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2656	Open in IMG/M
3300005467\|Ga0070706_101131121	Not Available	720	Open in IMG/M
3300005467\|Ga0070706_101614361	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	591	Open in IMG/M
3300005467\|Ga0070706_101638941	Not Available	587	Open in IMG/M
3300005467\|Ga0070706_101910697	All Organisms → cellular organisms → Bacteria → Proteobacteria	538	Open in IMG/M
3300005468\|Ga0070707_101818050	Not Available	576	Open in IMG/M
3300005468\|Ga0070707_102195661	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	519	Open in IMG/M
3300005468\|Ga0070707_102290078	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300005471\|Ga0070698_100052272	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4157	Open in IMG/M
3300005471\|Ga0070698_100677947	All Organisms → cellular organisms → Bacteria	972	Open in IMG/M
3300005538\|Ga0070731_11106288	Not Available	524	Open in IMG/M
3300005541\|Ga0070733_10421278	All Organisms → cellular organisms → Bacteria	889	Open in IMG/M
3300005549\|Ga0070704_100071842	All Organisms → cellular organisms → Bacteria	2516	Open in IMG/M
3300005578\|Ga0068854_101810448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	560	Open in IMG/M
3300005614\|Ga0068856_101313437	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300005921\|Ga0070766_10020008	All Organisms → cellular organisms → Bacteria	3549	Open in IMG/M
3300005921\|Ga0070766_10957637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	587	Open in IMG/M
3300006028\|Ga0070717_11002630	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus → Streptacidiphilus anmyonensis	760	Open in IMG/M
3300006028\|Ga0070717_12061627	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300006173\|Ga0070716_100345948	All Organisms → cellular organisms → Bacteria	1051	Open in IMG/M
3300006175\|Ga0070712_101301107	Not Available	633	Open in IMG/M
3300006175\|Ga0070712_101711259	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300006358\|Ga0068871_101377186	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300006804\|Ga0079221_10112094	Not Available	1362	Open in IMG/M
3300006804\|Ga0079221_10388283	Not Available	860	Open in IMG/M
3300006804\|Ga0079221_10401479	All Organisms → cellular organisms → Bacteria	850	Open in IMG/M
3300006806\|Ga0079220_10217182	All Organisms → cellular organisms → Bacteria	1118	Open in IMG/M
3300006852\|Ga0075433_10807491	Not Available	820	Open in IMG/M
3300006852\|Ga0075433_10838527	Not Available	802	Open in IMG/M
3300006871\|Ga0075434_100029280	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5415	Open in IMG/M
3300006871\|Ga0075434_100518567	All Organisms → cellular organisms → Bacteria	1212	Open in IMG/M
3300006903\|Ga0075426_10191086	All Organisms → cellular organisms → Bacteria	1483	Open in IMG/M
3300006903\|Ga0075426_10247206	Not Available	1298	Open in IMG/M
3300006954\|Ga0079219_10555152	Not Available	824	Open in IMG/M
3300007076\|Ga0075435_100144205	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1999	Open in IMG/M
3300007076\|Ga0075435_100538617	All Organisms → cellular organisms → Bacteria	1010	Open in IMG/M
3300007076\|Ga0075435_101600648	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300009101\|Ga0105247_11069826	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300009147\|Ga0114129_11450947	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	845	Open in IMG/M
3300010396\|Ga0134126_10058406	All Organisms → cellular organisms → Bacteria	4815	Open in IMG/M
3300011120\|Ga0150983_14426302	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus → Streptacidiphilus anmyonensis	741	Open in IMG/M
3300011269\|Ga0137392_11327120	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300011271\|Ga0137393_11491459	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	566	Open in IMG/M
3300012169\|Ga0153990_1061321	Not Available	852	Open in IMG/M
3300012205\|Ga0137362_11323286	Not Available	606	Open in IMG/M
3300012363\|Ga0137390_10740382	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → Ktedonobacter racemifer	943	Open in IMG/M
3300012917\|Ga0137395_11057895	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	578	Open in IMG/M
3300012955\|Ga0164298_10515035	Not Available	803	Open in IMG/M
3300012960\|Ga0164301_10381972	Not Available	979	Open in IMG/M
3300012961\|Ga0164302_11864347	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300012985\|Ga0164308_11806614	Not Available	570	Open in IMG/M
3300012986\|Ga0164304_10266200	Not Available	1157	Open in IMG/M
3300012988\|Ga0164306_11574338	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300014968\|Ga0157379_11627950	Not Available	631	Open in IMG/M
3300017792\|Ga0163161_10187743	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1588	Open in IMG/M
3300020579\|Ga0210407_11151698	Not Available	586	Open in IMG/M
3300020581\|Ga0210399_10716456	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	822	Open in IMG/M
3300021088\|Ga0210404_10138681	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1265	Open in IMG/M
3300021170\|Ga0210400_10761720	Not Available	794	Open in IMG/M
3300021180\|Ga0210396_10736411	Not Available	849	Open in IMG/M
3300021180\|Ga0210396_11345789	Not Available	592	Open in IMG/M
3300021403\|Ga0210397_10144036	Not Available	1659	Open in IMG/M
3300021403\|Ga0210397_11113573	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	613	Open in IMG/M
3300021432\|Ga0210384_10469157	All Organisms → cellular organisms → Bacteria	1133	Open in IMG/M
3300021432\|Ga0210384_11236171	Not Available	651	Open in IMG/M
3300021479\|Ga0210410_10467753	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1127	Open in IMG/M
3300021479\|Ga0210410_11036011	All Organisms → cellular organisms → Bacteria → Acidobacteria	710	Open in IMG/M
3300021479\|Ga0210410_11208828	Not Available	647	Open in IMG/M
3300021479\|Ga0210410_11400546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Photobacterium	592	Open in IMG/M
3300021559\|Ga0210409_10609796	All Organisms → cellular organisms → Bacteria	960	Open in IMG/M
3300021559\|Ga0210409_10645168	All Organisms → cellular organisms → Bacteria	928	Open in IMG/M
3300021861\|Ga0213853_10326251	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300024331\|Ga0247668_1041693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	937	Open in IMG/M
3300025885\|Ga0207653_10115197	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	963	Open in IMG/M
3300025885\|Ga0207653_10165961	Not Available	819	Open in IMG/M
3300025898\|Ga0207692_10315426	Not Available	955	Open in IMG/M
3300025898\|Ga0207692_10448120	Not Available	812	Open in IMG/M
3300025906\|Ga0207699_10486900	Not Available	889	Open in IMG/M
3300025910\|Ga0207684_10068970	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → Ktedonobacter racemifer	3005	Open in IMG/M
3300025910\|Ga0207684_10361437	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus → Streptacidiphilus anmyonensis	1249	Open in IMG/M
3300025910\|Ga0207684_10401294	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1179	Open in IMG/M
3300025910\|Ga0207684_10698471	Not Available	862	Open in IMG/M
3300025915\|Ga0207693_10281394	All Organisms → Viruses → Predicted Viral	1303	Open in IMG/M
3300025915\|Ga0207693_10710024	Not Available	778	Open in IMG/M
3300025915\|Ga0207693_11253822	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300025916\|Ga0207663_10726470	Not Available	788	Open in IMG/M
3300025922\|Ga0207646_10983176	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → Ktedonobacter racemifer	746	Open in IMG/M
3300025922\|Ga0207646_11379896	Not Available	613	Open in IMG/M
3300025928\|Ga0207700_10835034	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus → Streptacidiphilus anmyonensis	824	Open in IMG/M
3300025928\|Ga0207700_11543294	Not Available	589	Open in IMG/M
3300025928\|Ga0207700_11597375	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	577	Open in IMG/M
3300025929\|Ga0207664_10835245	Not Available	828	Open in IMG/M
3300025929\|Ga0207664_11189268	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus → Streptacidiphilus anmyonensis	680	Open in IMG/M
3300025929\|Ga0207664_11368015	Not Available	628	Open in IMG/M
3300025929\|Ga0207664_11642317	All Organisms → cellular organisms → Bacteria → Terrabacteria group	565	Open in IMG/M
3300025931\|Ga0207644_10346407	All Organisms → cellular organisms → Bacteria	1205	Open in IMG/M
3300025936\|Ga0207670_10136012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1806	Open in IMG/M
3300025939\|Ga0207665_10793595	Not Available	748	Open in IMG/M
3300026340\|Ga0257162_1018277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	838	Open in IMG/M
3300026507\|Ga0257165_1090521	Not Available	565	Open in IMG/M
3300026555\|Ga0179593_1158664	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura madurae	3226	Open in IMG/M
3300026555\|Ga0179593_1179535	Not Available	2206	Open in IMG/M
3300026998\|Ga0208369_1007666	All Organisms → cellular organisms → Bacteria	967	Open in IMG/M
3300027371\|Ga0209418_1024460	All Organisms → cellular organisms → Bacteria	1025	Open in IMG/M
3300027857\|Ga0209166_10216697	Not Available	1025	Open in IMG/M
3300027857\|Ga0209166_10721240	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	501	Open in IMG/M
3300027862\|Ga0209701_10133186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1530	Open in IMG/M
3300027867\|Ga0209167_10424567	Not Available	726	Open in IMG/M
3300028047\|Ga0209526_10042827	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3186	Open in IMG/M
3300029636\|Ga0222749_10559151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	623	Open in IMG/M
3300029636\|Ga0222749_10668244	Not Available	568	Open in IMG/M
3300031708\|Ga0310686_111555005	Not Available	566	Open in IMG/M
3300031720\|Ga0307469_10132539	All Organisms → cellular organisms → Bacteria	1828	Open in IMG/M
3300031720\|Ga0307469_12466694	Not Available	508	Open in IMG/M
3300031740\|Ga0307468_101928850	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300031753\|Ga0307477_10561499	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	772	Open in IMG/M
3300031820\|Ga0307473_10244881	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1095	Open in IMG/M
3300031820\|Ga0307473_11572118	Not Available	501	Open in IMG/M
3300031823\|Ga0307478_10001874	All Organisms → cellular organisms → Bacteria	17471	Open in IMG/M
3300031962\|Ga0307479_10064946	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3520	Open in IMG/M
3300031962\|Ga0307479_10781719	Not Available	931	Open in IMG/M
3300031962\|Ga0307479_10804828	All Organisms → cellular organisms → Bacteria	915	Open in IMG/M
3300031962\|Ga0307479_11841924	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300031962\|Ga0307479_11963260	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300032174\|Ga0307470_10139657	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1463	Open in IMG/M
3300032174\|Ga0307470_10881279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Asanoa → Asanoa iriomotensis	701	Open in IMG/M
3300032180\|Ga0307471_101332470	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	880	Open in IMG/M
3300032180\|Ga0307471_101858847	Not Available	752	Open in IMG/M
3300032180\|Ga0307471_102303994	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. GbtcB6	679	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.18%
Host-Associated	Host-Associated	13.82%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.53%
Plants	Host-Associated → Plants	13.16%
Aquatic	Environmental → Aquatic	0.66%
Fungi	Host-Associated → Fungi	0.66%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.53%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.53%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.97%
Freshwater	Environmental → Aquatic → Freshwater	0.66%
Roots	Host-Associated → Plants → Roots	0.66%
Mycelium	Host-Associated → Fungi → Mycelium	0.66%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.42%
Loam	Environmental → Terrestrial → Soil → Loam	42.11%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.63%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.97%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.66%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.66%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.66%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	37.50%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	25.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.61%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.97%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.66%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.66%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.66%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.66%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	29.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.82%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	11.18%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.58%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	5.92%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.61%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.29%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.29%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.29%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.97%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.32%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.32%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.32%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.66%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.66%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.66%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.66%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.66%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.66%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.66%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.66%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.66%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.66%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012169	Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC074 MetaG	Host-Associated	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024331	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK09	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026340	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-A	Environmental	Open in IMG/M
3300026507	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-B	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026998	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF046 (SPAdes)	Environmental	Open in IMG/M
3300027371	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1011514821	3300002245	Forest Soil	MKLLGLDHIGIVVRDINETIARAGDTVDGRALGERILAGDIDLQFLLCGET
JGI25617J43924_101668721	3300002914	Grasslands Soil	MKLLGLDHIGIVVRDINETIARAGDTVDGRALGERILAGDIDLQFLLC
Ga0062594_1003990972	3300005093	Soil	MKLLGLDHIGIIVRDINETIARAGDTVDGTAVGERILAGDIDLQFLL
Ga0070683_1003566812	3300005329	Corn Rhizosphere	MRLLGLDHIAIVVRDINETIARAGDTVDGRALGERILAGD
Ga0070689_1001033161	3300005340	Switchgrass Rhizosphere	MRLLGLDHIAIVVRDINETIARAGDTVDGRALGERILAGDIDLQF
Ga0070691_101923741	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLGLDHIGIIVRDINETIARAGDTVDGTAVGERILAGDIDLQFL
Ga0070671_1013156502	3300005355	Switchgrass Rhizosphere	MRLLGLDHIAIVVRDIDETIARAGDTVDGRAGGERILAGDIDLQFLLFGETR
Ga0070671_1015428742	3300005355	Switchgrass Rhizosphere	MKLLGLDHIGVVVRDIDQTVARAGETLDGRPVGGRFVSDDIDLQVLL
Ga0070674_1015521461	3300005356	Miscanthus Rhizosphere	MNIVGLDHIAFVVRSIDETVARAGDIADGRAVGERFVSDDID
Ga0070709_102418381	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLGLDHIAIVVRDIDETIARAGDTVDGRAVGERLRGGDIDLQF
Ga0070709_111923481	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLGLDHIGVVVRDIDETVARAGETVDGRAVGGRFVSDDIDLQVLLCGESTLELIE
Ga0070714_1008973662	3300005435	Agricultural Soil	MKLLGLDHIGIVVRDINETIARAGDTVDGRALGERILAGDIDLQFL
Ga0070714_1010680763	3300005435	Agricultural Soil	MKLLGLDHIAIVVRDINETVARAGDTVDGRASGERILAGDIDLQFLLFG
Ga0070714_1015813072	3300005435	Agricultural Soil	MRLLGLDHIAIIVRDIDETVARAGDTVDGRAVGERLRGGDIDLQFLLFGETR
Ga0070714_1019789771	3300005435	Agricultural Soil	MRLLGLDHIAIVVRDINETIARAGDTVDGRALGERILAGDIDLQFLLCG
Ga0070714_1020653622	3300005435	Agricultural Soil	MKLLGLDHIGIVVRDISETIARAGDTVDGRALGERILAGDI
Ga0070710_110792013	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLGLDHIAIVVRDIDETIARAGDTVDGRAVGERLRGGDIDLQFLLFGETRLE
Ga0070710_113004622	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MKIVGLDHIAFVVRDIDETIARVGDTLEGRAVGERFVSDDIDLQ
Ga0070711_1003325363	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLGLDHIGIVVRDIDETITQAGDTLDGRAVGERFVSDDIDLQVLLCG
Ga0070705_1004368343	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLGLDHIAIVVRDIDETIARAGDTVDGRALGERILAGDIDLQFLL
Ga0070708_1004355634	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLGLDHIGIVVRDINETIARAGETFAGRAVGRRFVSGDIDLQVLLLGESR
Ga0070708_1011528311	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLGLDHIGIAVRDINETIARAGGTVDGRALGERILAGDIDLQFLLCGETRLELIEV
Ga0070708_1012823222	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLGLDHIGIIVRDIDETIAQAGDTVDGRAVGERFVSGDIDLQVLLLGESRL
Ga0070706_1001028261	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MRLLGLDHIAIVVRDISETVARAGDTVDGRAVGERLRGGDIDLQFLLFGET
Ga0070706_1011311212	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLGLDHIAIVVRDINETVARAGDTVDGRAGGERILAGDIDLQFLLFGETRLELI
Ga0070706_1016143611	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLGLDHIGIVVRDINETIARAGDTVDGRALGERILAGD
Ga0070706_1016389411	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MKIVGLDHIAFVVRDIDDTIARAGDTLEGRAVGERFVSDDIDL
Ga0070706_1019106971	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MRLLGLDHIAIIVRDISETVARAGDTVDGRAVGERLRGGDIDLQFLLFGET
Ga0070707_1018180502	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLGLDHIGIIVRDIDETIAQAGDTVDGRAVGGRFVSGDIDLQVLLLGESRLE
Ga0070707_1021956611	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLGLDHIGIVVRDINETIARAGDTVDGRALGERILAGDVDLQFLLCGETR
Ga0070707_1022900781	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLGLDHIGIVVRDIDETIARAGDTVDGRALGERILAGDIDLQFL
Ga0070698_1000522721	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VKLLGLDHVGVVVRDIDETVARAGDTVDGRAVGERFVSDDIDLQVVLLG
Ga0070698_1006779472	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MRLLGLDHIAIIVRDISETVARAGDTVDGRAVGERLRGGDIDLQFLLFGETRLE
Ga0070731_111062881	3300005538	Surface Soil	MKLLGLDHVGIVVRDIDETVARAGETVDGRPVGERFVADNIDLQVLLCGE*
Ga0070733_104212782	3300005541	Surface Soil	MRLLGLDHIAIVVRDINETVARAGDTVDGRADGERLRGGDIDLQFLLFGETRLEL
Ga0070704_1000718424	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLGLDHIGVVVRDIDQTVARAGETLDGRPVGGRFVSDDIDLQVLLCGESTLELIE
Ga0068854_1018104481	3300005578	Corn Rhizosphere	MKLLGLDHIGIIVRDINETIARAGDTVDGTAVGERILAG
Ga0068856_1013134372	3300005614	Corn Rhizosphere	MRLLGLDHIAIVVRDIDETVARAGDTVDGRAGGERILAGDIDLQFLLFG
Ga0070766_100200085	3300005921	Soil	MRLLGLDHIAIVVRDISETVARAGDTVDGRADGERLRG
Ga0070766_109576372	3300005921	Soil	MRLLGLDHIAIVVRDINETVARAGDTVDGRAGGERILAGDIDLQFLLFGETRLE
Ga0070717_110026301	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MRLLGLDHIAIVVRDINETVARAGDTVDGRAGGER
Ga0070717_120616272	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MRLLGLDHIAIIVRDISETVARAGDTVDGRAVGERLRGGDIDLQF
Ga0070716_1003459482	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLGLDHIGIVVRDIDETVTRAGDTLDGRAVGERFVSDDIDLQVLLCGESTLEL
Ga0070712_1013011071	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLGLDHIGIVVRDISETIARAGDTVDGRALGERILAGDIDLQFL
Ga0070712_1017112591	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MRLLGLDHIAIVVRDINETIARAGDTVDGRALGERILAGDIDL
Ga0068871_1013771861	3300006358	Miscanthus Rhizosphere	MRLLGLDHIAIVVRDIDETVARAGDTVDGRAGGERILAGDID
Ga0079221_101120944	3300006804	Agricultural Soil	MRLLGLDHIAIVVRDISETVARAGDTVDGRAGGERILAGDIDLQFLLFGETR
Ga0079221_103882831	3300006804	Agricultural Soil	MKLLGLDHIGIVVRDIDEAVARAGVTVDGRAIGERFVSP
Ga0079221_104014792	3300006804	Agricultural Soil	VKLLGLDHIGIVVRDIDETVAQAGATVDGRAVGKRFVSADIDLQVLL
Ga0079220_102171821	3300006806	Agricultural Soil	MRLLGLDHIAIVVRDINETIARAGDTVDGRALGERILAGDIDLQFL
Ga0075433_108074912	3300006852	Populus Rhizosphere	MRLLGLDHIAIVVRDINETVARAGDTVDGMAGGERILAGDIDLQFLLFGETRLE
Ga0075433_108385271	3300006852	Populus Rhizosphere	MELLGLDHVGIVVRDIDETVARAGDTVDGRAVGERFVFDDIDLQVLMAGEST
Ga0075434_1000292801	3300006871	Populus Rhizosphere	MNIVGLDHIAFVVRSIDETVARAGDIADGRAVGERFVSDDIDLQVLL
Ga0075434_1005185671	3300006871	Populus Rhizosphere	MKLLGLDHIGIVVRNIDETVARAGDTLDGRAVGDRFVSDDIDLQVL
Ga0075426_101910861	3300006903	Populus Rhizosphere	MKLLGLDHVGVVVRDIDETVARAGHTFDGRAVGERFVTDDIDLQV
Ga0075426_102472061	3300006903	Populus Rhizosphere	MKLLGLDHIGIVVRDIDKTVARAGDTVDGRAVGERFVSDNIDLQVLMAGKST
Ga0079219_105551521	3300006954	Agricultural Soil	MKLLGLDHIGIVVRDIDNTVARAGDIVDGRAVGERFVSDDIDLQVL
Ga0075435_1001442051	3300007076	Populus Rhizosphere	MKLLGLDHVGIVVRDIDETVARAGDTVDGRAVGERF
Ga0075435_1005386172	3300007076	Populus Rhizosphere	MKLRGLDHIGIVVRDINETVARAGDTVDGRALGERILAGDI
Ga0075435_1016006482	3300007076	Populus Rhizosphere	VKLLGLDHIGIVVRDINETVARAGETVDGRPVGERFVADDIDLQVLLCGESTLEL
Ga0105247_110698263	3300009101	Switchgrass Rhizosphere	LDHIAIVVRDIDETIARAGDTVDGRAGGERILAGDIDLQFLLFGETRL
Ga0114129_114509471	3300009147	Populus Rhizosphere	MKVLGLDHIGIVVRDINETIARAGETFDGRAVGRRFVSGDIDLQVLLLGESRLELI
Ga0134126_100584061	3300010396	Terrestrial Soil	LDHIAIVVRDINETVARAGDTVDGMAGGERILAGDIDLQFLLFGETRLELI
Ga0150983_144263021	3300011120	Forest Soil	MKLLGLDHIGIVVRDINETIARAGDTVDGRAGGDRILAGDIDLQFMLFGETRLELIE
Ga0137392_113271202	3300011269	Vadose Zone Soil	MKLLGLDHIGIVVRNIDKTVARAGDTVDGRAVGERFVSDDIDLQVLMAGKSTLEL
Ga0137393_114914592	3300011271	Vadose Zone Soil	MKLLGLDHIAIVVRDINETIARAGDTVDGRALGERILAGDIDLQ
Ga0153990_10613211	3300012169	Attine Ant Fungus Gardens	MKLLGLDHIGIVVRDIDNTVARAGDTIDGRAVGERF
Ga0137362_113232861	3300012205	Vadose Zone Soil	LDHIAFVVRDIDETIARAGDTVDGRAVGERIHAGDIDLQVLLSGEMQLE
Ga0137390_107403821	3300012363	Vadose Zone Soil	MKLLGLDHIGIVVRDINETIARAGDTVDGRALGERILAGDIDLQFLLCGETR
Ga0137395_110578952	3300012917	Vadose Zone Soil	MKLLALDHIGIVVRDINETIARASDTVDGRALGERILAGDIDLQ
Ga0164298_105150352	3300012955	Soil	MKLLGLDHIGVVVRDIDQTVARAGETLDGRPIGGRFVSDDIDL
Ga0164301_103819723	3300012960	Soil	MRLLGLDHIAIVVRDINETVARAGDTVDGRAGGERILAGDI
Ga0164302_118643471	3300012961	Soil	MKLIGLDHIGIVVREIDETIAQAGGTVDGRAVGERFVSADIELQVLLCGESTLELIE
Ga0164308_118066141	3300012985	Soil	MNIVGLDHIAFVVRDIDETITRVGDTLEGRAVGERFVSDDI
Ga0164304_102662001	3300012986	Soil	MKLRGLDHIGIVVRDINETVARAGDTVDGRAGGERIL
Ga0164306_115743381	3300012988	Soil	MELLGLDHIGIVVRDIDETIARAGDTVDGRAIGERIRGGDIDLQVLLSGETRLE
Ga0157379_116279503	3300014968	Switchgrass Rhizosphere	MRLRVLDHIAIVVRDINETVARAGDTVDGRAGGERILAG
Ga0163161_101877432	3300017792	Switchgrass Rhizosphere	MRLLGLDHIAIVVRDINETIARAGDTVDGRALGERILAGDIDLQFLLCGETRLEL
Ga0210407_111516981	3300020579	Soil	MKLLGLDHIGIVVRDIDKTVARAGDTVDGRAVGERFVSDDIDLQVLMAGKSTLEL
Ga0210399_107164561	3300020581	Soil	MKLLGLDHIGIIVRDLEETIAQARDTVDARPVGERFVSGDIDLQVL
Ga0210404_101386811	3300021088	Soil	MKLLGLDHIGIIVRDLEETIAQARDTVDARPVGERFVSGDIDLQVLLMG
Ga0210400_107617201	3300021170	Soil	MKLLGIDHIGIVVRDINETIARAGDTVDGRALGERIPAGNVDLQFLLCGESLLEL
Ga0210396_107364112	3300021180	Soil	MRLLGLDHIAVIVRDINETVARAGDTVDGRADGERLRGGDI
Ga0210396_113457891	3300021180	Soil	MRLLGLDHIAIVVRDISETVARAGDTVDGRADGERLRGGDIDL
Ga0210397_101440361	3300021403	Soil	MKLLGIDHIGIVVRDINETIARAGDTLDGRALGERIPA
Ga0210397_111135731	3300021403	Soil	MKLLGLDHIGIVVRDINETIARAGDTVDGRALGER
Ga0210384_104691573	3300021432	Soil	MKLLGLDHIGIVVRDIDNTVARAGATVDGRAVGERFVSDSIDLQV
Ga0210384_112361712	3300021432	Soil	MKLLGIDHIGIVVRDINETIARAGDTVDGRALGERIPAG
Ga0210410_104677533	3300021479	Soil	MKVLGLDHIGIVVRDINDTIARAGDTVDGSALGERIPAGD
Ga0210410_110360112	3300021479	Soil	MKLLGLDHVGIVVRNIDETVARAGAIVDGRAVGDRFVSDDIDLQVLLAG
Ga0210410_112088282	3300021479	Soil	MKLLGIDHIGIVVRDINETIARAGDTVDGRALGER
Ga0210410_114005462	3300021479	Soil	MKLLGLDHIGIVVRDIDKTVARAGDTVDGRAVGERFVSDDIDLQ
Ga0210409_106097961	3300021559	Soil	MKLLGLDHVGIVVRDIDETVARAGATVDGRAVGERFVSDDIDLQVLTAG
Ga0210409_106451682	3300021559	Soil	MKLLGLDHIGIVVRDINETIARAGDTVDGRALGERILA
Ga0213853_103262512	3300021861	Watersheds	MKLLGLDHIGIVVRDINETIARAGDTVDGTALGERILAGD
Ga0247668_10416932	3300024331	Soil	MRLRVLDHIAIVVRDINETVARAGDTVDGRADGER
Ga0207653_101151972	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MNLLGLDHIGIVVRDIDETVARAGETVDGRPVGERF
Ga0207653_101659611	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLGLDHIGIVVRDIDNTVARAGDTVDGRAVGERFVSDNIDLQVLMIGKSA
Ga0207692_103154261	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MRLLGLDHIAIVVRDINETVARAGDTVDGRAGGERILAG
Ga0207692_104481202	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLGLDHIGIVVRDIDETVARAGETVDGRPVGDRF
Ga0207699_104869003	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLGLDHIGVVVRDIDETVARAGETLDGRPVGGRFLSDDIDLQVLL
Ga0207684_100689701	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLGLDHIGIVVRDINETIARAGDTVDGRALGERILAGDIDLQF
Ga0207684_103614374	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MRLLGLDHIAIVVRDINETVARACDTVDGRAGGERILAGDIDL
Ga0207684_104012941	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLGLDHIGIVVRDIDETIARAGETVDGRPVGERF
Ga0207684_106984711	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MRLLGLDHIAIIVRDISETVARAGDTVDGRAVGERLRGGDIDLQFLLFGETRL
Ga0207693_102813941	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	VKLLGLDHIGIVVRDIDETVARAGDTLDGRAVGER
Ga0207693_107100241	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLGLDHIGIVVRDIDETVAQAGGTVDGRAVGKRFV
Ga0207693_112538222	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MSMKLLGLDHIGIVVRDIDETVARARETVDGNPVGER
Ga0207663_107264702	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLGLDHIGVVVRDIDETVARAGETVDGRAVGGRFVSDDIDLQVLLCGESTLE
Ga0207646_109831761	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLGLDHIGIVVRDINETIARAGDTVDGRALGERI
Ga0207646_113798961	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLGLDHIGIIVRDIDETIAQAGDTVDGRAVGGR
Ga0207700_108350342	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLGLDHIAIVVRDIDETIARAGDTVDGRAVGERLRGGDIDLQFLLFGETRLELIE
Ga0207700_115432941	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLGLDHVGIVVRNVDEAVARAGETVDGRAVGERF
Ga0207700_115973752	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLGLDHIGIIVRDINETIARAGDTVDGTAVGERILAGDIDLQFLLF
Ga0207664_108352452	3300025929	Agricultural Soil	MKLLGLDHVGIVVRDIDETVARAGETLDGRTVGERFVSDDID
Ga0207664_111892681	3300025929	Agricultural Soil	MRLLGLDHIAIVVRDINETVARAGDTVDGRADGERILAGD
Ga0207664_113680152	3300025929	Agricultural Soil	MKLLGLDHIGIVVRDIDETVARAGETVDGRPVGERFVADDIDLQV
Ga0207664_116423172	3300025929	Agricultural Soil	MRLLGLDHIAIIVRDIDETVARAGDTVDGRAVGERLRGGDIDLQFL
Ga0207644_103464071	3300025931	Switchgrass Rhizosphere	MRLLGLDHIAIVVRDINETIARAGDTVDGRALGERILA
Ga0207670_101360123	3300025936	Switchgrass Rhizosphere	MRLLGLDHIAIVVRDINETIARAGDTVDGRALGERILAGDIDLQFLLCGET
Ga0207665_107935951	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLGLDHIGIVVRDIDETVARAGETVDGKTVGERF
Ga0257162_10182771	3300026340	Soil	MKLLGLDHIGIVVRDINETIARAGDTVDGRAQGERILAGDIDLQFLLFGETRLELI
Ga0257165_10905211	3300026507	Soil	MKLLGLDHIGIVVRDINETIARAGDTVDGRALGERILAGDIDLQFLLCGETRLEL
Ga0179593_11586645	3300026555	Vadose Zone Soil	MKLLGLDHIGIVVRDINETIARAGDTVDGRALGERILAGDVDLQFLLCG
Ga0179593_11795352	3300026555	Vadose Zone Soil	MKLLGLDHIGIVVRDIDNTVARAGDTVDGRAVGERFVSDDIDLQVLMPANLPWS
Ga0208369_10076661	3300026998	Forest Soil	MKLLGLDHIGIVVRDINETIARAGDTVDGRAGGERILAG
Ga0209418_10244601	3300027371	Forest Soil	MKLLGLDHIGIVVRDINETIARAGDTVDGRALGERILAG
Ga0209166_102166972	3300027857	Surface Soil	MRLLGLDHIAIVVRDIDETVARAGDTVDGRADGERLRGGDIDLQFLLFGETRLE
Ga0209166_107212402	3300027857	Surface Soil	MKLLGLDHIGIVVRDINETIARAGDTVDGRALGERILAGDIDLQFLLCGETRLE
Ga0209701_101331861	3300027862	Vadose Zone Soil	MKLLGLDHIGIVVRDIDQTVARAGETVDGRAVGERFVADDID
Ga0209167_104245671	3300027867	Surface Soil	MRLLGLDHIAIVVRDIDETVARAGDTVDGRADGERLHGGDIDLQFL
Ga0209526_100428274	3300028047	Forest Soil	MKLLGLDHIGIVVRDINETVARAGDTVDGRALGERILAGDVDLQFLLCGETR
Ga0222749_105591513	3300029636	Soil	MKLLGLDHVGIIVRDIDETVARAGNTVDGRTVGERFVSE
Ga0222749_106682441	3300029636	Soil	MKVLGLDHIAFVVRDIDETVARAGDTIGGGAVGERLH
Ga0310686_1115550051	3300031708	Soil	MRLLGLDHIAIVVRDINETVARAGDTVDGRAGGERILAGDIDLQFLLFGET
Ga0307469_101325393	3300031720	Hardwood Forest Soil	MRLLGLDHIAIVVRDINETVARAGDTVDGMAGGERILAGDIDLQFLLFG
Ga0307469_124666942	3300031720	Hardwood Forest Soil	MKLLGLDHIGIVVRDIDNTVARAGDTVDGRAVGERFVSDNIDL
Ga0307468_1019288501	3300031740	Hardwood Forest Soil	MRLLGLDHIAIVVRDINETVARAGDTVDGRAGGERILAGDIDLQF
Ga0307477_105614992	3300031753	Hardwood Forest Soil	MKLLGLDHIGIVVRNIDETVTRASDTLDGRAVGERFVSDDIELQVL
Ga0307473_102448811	3300031820	Hardwood Forest Soil	MRLLGLDHIAIVVRDINETVARAGDTVDGMAGGERILAGDIDLQFLLFGETRLELI
Ga0307473_115721182	3300031820	Hardwood Forest Soil	MKLLGLDHVGIVVPNIDAAVIQAGRTLEGRAVGDR
Ga0307478_1000187415	3300031823	Hardwood Forest Soil	MKLLGLDHIGIVVRDIDETVARAGETVDGRPVGDRFVADDIDLQVLRFGESTLEL
Ga0307479_100649466	3300031962	Hardwood Forest Soil	MKLLGLDHIGIVVGDIDETVARAGETVDGRPVGERFVADDIDLQVLLCGEST
Ga0307479_107817192	3300031962	Hardwood Forest Soil	MKLLGLDHIGIVVRNIDETVTRATDTLDGRAVGERFV
Ga0307479_108048283	3300031962	Hardwood Forest Soil	MKILGLDHIGIVVRDIEETVARAGETLDGRPVGQRFVAD
Ga0307479_118419242	3300031962	Hardwood Forest Soil	MKLLGLDHIGIVVRDIDETVARAGETVDGRAVGERFV
Ga0307479_119632601	3300031962	Hardwood Forest Soil	VKLLGLDHIGIVVRDIDETVAQAGATVDGRAVGKRFA
Ga0307470_101396571	3300032174	Hardwood Forest Soil	MRLLGLDHIAIVVRDINETVARAGDTVDGRAGGERI
Ga0307470_108812792	3300032174	Hardwood Forest Soil	MKLLGLDHIGVIVGNIDEAVARAGDTIDGRAVGERFV
Ga0307471_1013324703	3300032180	Hardwood Forest Soil	MKLLGLDHIGIVVRDIDETIARAGETVDGRPVGERFVADNIDLQVLLV
Ga0307471_1018588472	3300032180	Hardwood Forest Soil	MKLLGLDHIGIVVRDIDNTVARAGDTVDGRAVGERFVSDDIDLQVLMAG
Ga0307471_1023039942	3300032180	Hardwood Forest Soil	MKLLGLDHIGIVVRDIDETIARAGETVDGRAVGGRFVSDDIDLQVLLC

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F045962

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences