NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F046029

Metagenome Family F046029

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F046029
Family Type Metagenome
Number of Sequences 152
Average Sequence Length 36 residues
Representative Sequence MKIFLGILAAVLVAASLFADYKWRRWMAARRRDRQ
Number of Associated Samples 101
Number of Associated Scaffolds 152

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 22.30 %
% of genes near scaffold ends (potentially truncated) 13.16 %
% of genes from short scaffolds (< 2000 bps) 60.53 %
Associated GOLD sequencing projects 100
AlphaFold2 3D model prediction Yes
3D model pTM-score0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (65.132 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog
(17.105 % of family members)
Environment Ontology (ENVO) Unclassified
(46.711 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(38.158 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 52.38%    β-sheet: 0.00%    Coil/Unstructured: 47.62%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.46
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 152 Family Scaffolds
PF13462Thioredoxin_4 34.87
PF00155Aminotran_1_2 1.97
PF00144Beta-lactamase 1.97
PF04453LptD 1.97
PF09719C_GCAxxG_C_C 1.32
PF05016ParE_toxin 1.32
PF04055Radical_SAM 1.32
PF00275EPSP_synthase 1.32
PF16499Melibiase_2 1.32
PF02518HATPase_c 1.32
PF10604Polyketide_cyc2 1.32
PF03033Glyco_transf_28 1.32
PF14520HHH_5 0.66
PF08238Sel1 0.66
PF00719Pyrophosphatase 0.66
PF01804Penicil_amidase 0.66
PF04101Glyco_tran_28_C 0.66
PF01455HupF_HypC 0.66
PF03551PadR 0.66
PF12680SnoaL_2 0.66
PF13195DUF4011 0.66
PF06742DUF1214 0.66
PF02910Succ_DH_flav_C 0.66
PF07681DoxX 0.66
PF09364XFP_N 0.66
PF13180PDZ_2 0.66
PF00486Trans_reg_C 0.66
PF02371Transposase_20 0.66
PF01264Chorismate_synt 0.66
PF08327AHSA1 0.66
PF01687Flavokinase 0.66
PF03992ABM 0.66
PF06271RDD 0.66
PF00005ABC_tran 0.66
PF01850PIN 0.66
PF01408GFO_IDH_MocA 0.66
PF00313CSD 0.66
PF16640Big_3_5 0.66
PF01381HTH_3 0.66
PF14125DUF4292 0.66
PF03741TerC 0.66
PF02321OEP 0.66
PF09286Pro-kuma_activ 0.66
PF00146NADHdh 0.66
PF12838Fer4_7 0.66
PF02687FtsX 0.66
PF06250YhcG_C 0.66
PF00474SSF 0.66

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 152 Family Scaffolds
COG1452LPS assembly outer membrane protein LptD (organic solvent tolerance protein OstA)Cell wall/membrane/envelope biogenesis [M] 1.97
COG1680CubicO group peptidase, beta-lactamase class C familyDefense mechanisms [V] 1.97
COG1686D-alanyl-D-alanine carboxypeptidaseCell wall/membrane/envelope biogenesis [M] 1.97
COG2367Beta-lactamase class ADefense mechanisms [V] 1.97
COG1538Outer membrane protein TolCCell wall/membrane/envelope biogenesis [M] 1.32
COG0082Chorismate synthaseAmino acid transport and metabolism [E] 0.66
COG0196FAD synthaseCoenzyme transport and metabolism [H] 0.66
COG0221Inorganic pyrophosphataseEnergy production and conversion [C] 0.66
COG0298Hydrogenase maturation factor HybG, HypC/HupF familyPosttranslational modification, protein turnover, chaperones [O] 0.66
COG0650Formate hydrogenlyase subunit HyfCEnergy production and conversion [C] 0.66
COG0861Tellurite resistance membrane protein TerCInorganic ion transport and metabolism [P] 0.66
COG1005NADH:ubiquinone oxidoreductase subunit 1 (chain H)Energy production and conversion [C] 0.66
COG1695DNA-binding transcriptional regulator, PadR familyTranscription [K] 0.66
COG1714Uncharacterized membrane protein YckC, RDD familyFunction unknown [S] 0.66
COG1733DNA-binding transcriptional regulator, HxlR familyTranscription [K] 0.66
COG1846DNA-binding transcriptional regulator, MarR familyTranscription [K] 0.66
COG2259Uncharacterized membrane protein YphA, DoxX/SURF4 familyFunction unknown [S] 0.66
COG2366Acyl-homoserine lactone (AHL) acylase PvdQSecondary metabolites biosynthesis, transport and catabolism [Q] 0.66
COG3547TransposaseMobilome: prophages, transposons [X] 0.66
COG4270Uncharacterized membrane proteinFunction unknown [S] 0.66
COG4804Predicted nuclease of restriction endonuclease-like (RecB) superfamily, DUF1016 familyGeneral function prediction only [R] 0.66
COG4934Serine protease, subtilase familyPosttranslational modification, protein turnover, chaperones [O] 0.66
COG5361Uncharacterized conserved proteinMobilome: prophages, transposons [X] 0.66
COG5402Uncharacterized protein, contains DUF1214 domainFunction unknown [S] 0.66

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms65.13 %
UnclassifiedrootN/A34.87 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000313|WSSedB1CaDRAFT_10072061Not Available652Open in IMG/M
3300001279|JGI20214J14112_1056910Not Available619Open in IMG/M
3300005535|Ga0070684_100748259Not Available912Open in IMG/M
3300005614|Ga0068856_100297768All Organisms → cellular organisms → Bacteria1630Open in IMG/M
3300005840|Ga0068870_10712794Not Available693Open in IMG/M
3300006163|Ga0070715_10998131Not Available521Open in IMG/M
3300009630|Ga0116114_1086185Not Available847Open in IMG/M
3300009637|Ga0116118_1082902All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium1094Open in IMG/M
3300009701|Ga0116228_10258522All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. SCN 62-91229Open in IMG/M
3300010386|Ga0136806_1003582Not Available3337Open in IMG/M
3300012469|Ga0150984_106119480All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1089Open in IMG/M
3300013297|Ga0157378_12213832Not Available601Open in IMG/M
3300014151|Ga0181539_1008391All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae7392Open in IMG/M
3300014151|Ga0181539_1163008All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068880Open in IMG/M
3300014152|Ga0181533_1015785All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE00685211Open in IMG/M
3300014153|Ga0181527_1003933All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE006812976Open in IMG/M
3300014160|Ga0181517_10026291All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terracidiphilus3889Open in IMG/M
3300014160|Ga0181517_10049023All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2614Open in IMG/M
3300014160|Ga0181517_10278461All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae885Open in IMG/M
3300014161|Ga0181529_10167661All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE00681319Open in IMG/M
3300014161|Ga0181529_10280175Not Available939Open in IMG/M
3300014161|Ga0181529_10417884All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068722Open in IMG/M
3300014161|Ga0181529_10706769All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae520Open in IMG/M
3300014162|Ga0181538_10436238Not Available695Open in IMG/M
3300014169|Ga0181531_10001200All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae16560Open in IMG/M
3300014169|Ga0181531_10840304Not Available573Open in IMG/M
3300014199|Ga0181535_10031612All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terracidiphilus3929Open in IMG/M
3300014199|Ga0181535_10709918Not Available572Open in IMG/M
3300014200|Ga0181526_10072715All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE00682189Open in IMG/M
3300014201|Ga0181537_10469886Not Available861Open in IMG/M
3300014325|Ga0163163_10144501All Organisms → cellular organisms → Bacteria2422Open in IMG/M
3300014491|Ga0182014_10000031All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae133105Open in IMG/M
3300014491|Ga0182014_10000373All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae58453Open in IMG/M
3300014491|Ga0182014_10008035All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae10894Open in IMG/M
3300014491|Ga0182014_10012115All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae8252Open in IMG/M
3300014491|Ga0182014_10016221All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE00686685Open in IMG/M
3300014492|Ga0182013_10005003All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae15662Open in IMG/M
3300014492|Ga0182013_10033975All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae4197Open in IMG/M
3300014492|Ga0182013_10052688All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE00683078Open in IMG/M
3300014492|Ga0182013_10347000Not Available814Open in IMG/M
3300014492|Ga0182013_10371274Not Available776Open in IMG/M
3300014493|Ga0182016_10039118All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE00683861Open in IMG/M
3300014493|Ga0182016_10142465All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1624Open in IMG/M
3300014493|Ga0182016_10766408Not Available538Open in IMG/M
3300014494|Ga0182017_10174638All Organisms → cellular organisms → Bacteria1382Open in IMG/M
3300014498|Ga0182019_10480244All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae859Open in IMG/M
3300014499|Ga0182012_10010436All Organisms → cellular organisms → Bacteria8993Open in IMG/M
3300014501|Ga0182024_12910850All Organisms → cellular organisms → Bacteria507Open in IMG/M
3300014502|Ga0182021_13042296Not Available561Open in IMG/M
3300014654|Ga0181525_10000144All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae65745Open in IMG/M
3300014658|Ga0181519_10495605All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068753Open in IMG/M
3300014838|Ga0182030_10004321All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae30346Open in IMG/M
3300014838|Ga0182030_10140433All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE00683115Open in IMG/M
3300014838|Ga0182030_10289750All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE00681818Open in IMG/M
3300014838|Ga0182030_10703506Not Available947Open in IMG/M
3300014838|Ga0182030_10725034All Organisms → cellular organisms → Bacteria926Open in IMG/M
3300014838|Ga0182030_11201705Not Available648Open in IMG/M
3300014839|Ga0182027_10639862All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE00681136Open in IMG/M
3300017938|Ga0187854_10299130Not Available688Open in IMG/M
3300017941|Ga0187850_10203286Not Available906Open in IMG/M
3300017948|Ga0187847_10168079All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1197Open in IMG/M
3300017948|Ga0187847_10670538Not Available582Open in IMG/M
3300017948|Ga0187847_10853463Not Available517Open in IMG/M
3300017988|Ga0181520_10000294All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae111010Open in IMG/M
3300017988|Ga0181520_10000678All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae73289Open in IMG/M
3300017988|Ga0181520_10016515All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae8883Open in IMG/M
3300017988|Ga0181520_10762788Not Available655Open in IMG/M
3300018008|Ga0187888_1142579All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae986Open in IMG/M
3300018030|Ga0187869_10247917Not Available863Open in IMG/M
3300018044|Ga0187890_10000838All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae22294Open in IMG/M
3300018044|Ga0187890_10224487All Organisms → cellular organisms → Bacteria1061Open in IMG/M
3300019786|Ga0182025_1159142All Organisms → cellular organisms → Bacteria2262Open in IMG/M
3300021180|Ga0210396_11466774Not Available562Open in IMG/M
3300022555|Ga0212088_10000657All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE006878701Open in IMG/M
3300022849|Ga0224531_1002722All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae6922Open in IMG/M
3300022850|Ga0224552_1004320All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium2003Open in IMG/M
3300022861|Ga0224528_1000446All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae31994Open in IMG/M
3300022861|Ga0224528_1008303All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3545Open in IMG/M
3300022861|Ga0224528_1015016All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium2075Open in IMG/M
3300022877|Ga0224527_1085362Not Available527Open in IMG/M
(restricted) 3300023060|Ga0224519_1030504Not Available628Open in IMG/M
3300023068|Ga0224554_1124112All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus577Open in IMG/M
3300023088|Ga0224555_1037758Not Available1931Open in IMG/M
3300023247|Ga0224529_1000037All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae95505Open in IMG/M
3300023258|Ga0224535_1078356Not Available729Open in IMG/M
3300025496|Ga0208191_1098715Not Available595Open in IMG/M
3300025926|Ga0207659_11224343All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae645Open in IMG/M
3300025930|Ga0207701_10212980Not Available1695Open in IMG/M
3300025986|Ga0207658_10273155All Organisms → cellular organisms → Bacteria1446Open in IMG/M
3300026023|Ga0207677_10221960All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1516Open in IMG/M
3300026095|Ga0207676_11783352All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae614Open in IMG/M
3300027825|Ga0209039_10012780All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae4675Open in IMG/M
3300027825|Ga0209039_10371041Not Available552Open in IMG/M
3300028068|Ga0255355_1007234All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE00683102Open in IMG/M
3300028082|Ga0255352_1022234All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1116Open in IMG/M
3300028552|Ga0302149_1057708Not Available1000Open in IMG/M
3300028560|Ga0302144_10014174All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE00682594Open in IMG/M
3300028560|Ga0302144_10034953Not Available1614Open in IMG/M
3300028560|Ga0302144_10107657Not Available897Open in IMG/M
3300028565|Ga0302145_10027097Not Available2081Open in IMG/M
3300028565|Ga0302145_10074172Not Available1172Open in IMG/M
3300028652|Ga0302166_10122263Not Available592Open in IMG/M
3300028748|Ga0302156_10061989All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE00681983Open in IMG/M
3300028813|Ga0302157_10319617Not Available844Open in IMG/M
3300029817|Ga0247275_1035866All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE00681462Open in IMG/M
3300029911|Ga0311361_10104483All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE00683995Open in IMG/M
3300029913|Ga0311362_10061699All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE00685465Open in IMG/M
3300029915|Ga0311358_11017476Not Available568Open in IMG/M
3300029922|Ga0311363_10273974All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE00681929Open in IMG/M
3300029939|Ga0311328_11144853Not Available500Open in IMG/M
3300029999|Ga0311339_10863205Not Available864Open in IMG/M
3300030051|Ga0302195_10356869Not Available639Open in IMG/M
3300030114|Ga0311333_10000016All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae123320Open in IMG/M
3300030114|Ga0311333_10140911All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE00681835Open in IMG/M
3300030506|Ga0302194_10080497All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE00681496Open in IMG/M
3300030688|Ga0311345_10970676Not Available643Open in IMG/M
3300031239|Ga0265328_10109930Not Available1024Open in IMG/M
3300031239|Ga0265328_10301764All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae618Open in IMG/M
3300031524|Ga0302320_10305070Not Available2110Open in IMG/M
3300031669|Ga0307375_10171234All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terracidiphilus → Terracidiphilus gabretensis1484Open in IMG/M
3300031669|Ga0307375_10247696All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1168Open in IMG/M
3300031726|Ga0302321_100285061All Organisms → cellular organisms → Bacteria1762Open in IMG/M
3300031753|Ga0307477_11009180All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae546Open in IMG/M
3300031759|Ga0316219_1041030All Organisms → cellular organisms → Bacteria1962Open in IMG/M
3300031813|Ga0316217_10000407All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae61958Open in IMG/M
3300031813|Ga0316217_10071421All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1708Open in IMG/M
3300031813|Ga0316217_10310766All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae608Open in IMG/M
3300032805|Ga0335078_10123251All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE00683704Open in IMG/M
3300032895|Ga0335074_10440742All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1387Open in IMG/M
3300032896|Ga0335075_10131039All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3186Open in IMG/M
3300032898|Ga0335072_10281706All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE00681880Open in IMG/M
3300033134|Ga0335073_10697635All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terracidiphilus → Terracidiphilus gabretensis1111Open in IMG/M
3300033402|Ga0326728_10000026All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae587834Open in IMG/M
3300033402|Ga0326728_10000397All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae171195Open in IMG/M
3300033402|Ga0326728_10002771All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae57218Open in IMG/M
3300033402|Ga0326728_10004503All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae41041Open in IMG/M
3300033402|Ga0326728_10011131All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae20702Open in IMG/M
3300033402|Ga0326728_10017324All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae14466Open in IMG/M
3300033402|Ga0326728_10051590All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE00685984Open in IMG/M
3300033402|Ga0326728_10180212All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2187Open in IMG/M
3300033405|Ga0326727_10006717All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae31227Open in IMG/M
3300033405|Ga0326727_11028935All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa ligni597Open in IMG/M
3300033755|Ga0371489_0216995All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae978Open in IMG/M
3300033823|Ga0334837_030814All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1676Open in IMG/M
3300033824|Ga0334840_133138Not Available665Open in IMG/M
3300034130|Ga0370494_000956All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE00687435Open in IMG/M
3300034282|Ga0370492_0349424All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae600Open in IMG/M
3300034282|Ga0370492_0456318Not Available518Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog17.11%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog13.16%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog10.53%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil9.87%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil7.89%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland5.92%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil3.29%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen3.29%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater2.63%
FenEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Fen2.63%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland1.97%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil1.97%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere1.97%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil1.32%
WetlandEnvironmental → Aquatic → Marine → Wetlands → Sediment → Wetland1.32%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost1.32%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil1.32%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.32%
Freshwater Lake HypolimnionEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion0.66%
SedimentEnvironmental → Aquatic → Freshwater → Groundwater → Mine Drainage → Sediment0.66%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.66%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere0.66%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.66%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.66%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.66%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.66%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa0.66%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.66%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.66%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.66%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.66%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.66%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.66%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere0.66%
Host-AssociatedHost-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated0.66%

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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000313Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site B1 CattailEnvironmentalOpen in IMG/M
3300001279Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 BulkEnvironmentalOpen in IMG/M
3300005535Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaGEnvironmentalOpen in IMG/M
3300005614Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2Host-AssociatedOpen in IMG/M
3300005840Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2Host-AssociatedOpen in IMG/M
3300006163Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaGEnvironmentalOpen in IMG/M
3300009630Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_40EnvironmentalOpen in IMG/M
3300009637Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40EnvironmentalOpen in IMG/M
3300009701Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum fallax MGHost-AssociatedOpen in IMG/M
3300010386Acid mine drainage microbial communities from Malanjkhand copper mine, India - M8 kmer 63EnvironmentalOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300014151Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaGEnvironmentalOpen in IMG/M
3300014152Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_60_metaGEnvironmentalOpen in IMG/M
3300014153Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_60_metaGEnvironmentalOpen in IMG/M
3300014160Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_30_metaGEnvironmentalOpen in IMG/M
3300014161Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_30_metaGEnvironmentalOpen in IMG/M
3300014162Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaGEnvironmentalOpen in IMG/M
3300014169Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaGEnvironmentalOpen in IMG/M
3300014199Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaGEnvironmentalOpen in IMG/M
3300014200Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaGEnvironmentalOpen in IMG/M
3300014201Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaGEnvironmentalOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014491Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaGEnvironmentalOpen in IMG/M
3300014492Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaGEnvironmentalOpen in IMG/M
3300014493Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaGEnvironmentalOpen in IMG/M
3300014494Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaGEnvironmentalOpen in IMG/M
3300014498Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaGEnvironmentalOpen in IMG/M
3300014499Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaGEnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014502Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014654Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaGEnvironmentalOpen in IMG/M
3300014658Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaGEnvironmentalOpen in IMG/M
3300014838Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014839Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300017938Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150EnvironmentalOpen in IMG/M
3300017941Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150EnvironmentalOpen in IMG/M
3300017948Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10EnvironmentalOpen in IMG/M
3300017988Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaGEnvironmentalOpen in IMG/M
3300018008Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40EnvironmentalOpen in IMG/M
3300018030Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100EnvironmentalOpen in IMG/M
3300018044Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10EnvironmentalOpen in IMG/M
3300019786Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300022555Alinen_combined assemblyEnvironmentalOpen in IMG/M
3300022849Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T100EnvironmentalOpen in IMG/M
3300022850Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 1-5EnvironmentalOpen in IMG/M
3300022861Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T25EnvironmentalOpen in IMG/M
3300022877Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T0EnvironmentalOpen in IMG/M
3300023060 (restricted)Peat soil microbial communities from Stordalen Mire, Sweden - IR.B.S.T0EnvironmentalOpen in IMG/M
3300023068Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 20-24EnvironmentalOpen in IMG/M
3300023088Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 30-34EnvironmentalOpen in IMG/M
3300023247Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T50EnvironmentalOpen in IMG/M
3300023258Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 30-34EnvironmentalOpen in IMG/M
3300025496Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_40 (SPAdes)EnvironmentalOpen in IMG/M
3300025926Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025930Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)EnvironmentalOpen in IMG/M
3300025986Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026023Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027825Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300028068Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T75EnvironmentalOpen in IMG/M
3300028082Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T0EnvironmentalOpen in IMG/M
3300028552Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_1EnvironmentalOpen in IMG/M
3300028560Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_2EnvironmentalOpen in IMG/M
3300028565Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_3EnvironmentalOpen in IMG/M
3300028652Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E3_3EnvironmentalOpen in IMG/M
3300028748Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_2EnvironmentalOpen in IMG/M
3300028813Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_3EnvironmentalOpen in IMG/M
3300029817Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Bog25EnvironmentalOpen in IMG/M
3300029911III_Bog_N2 coassemblyEnvironmentalOpen in IMG/M
3300029913III_Bog_N3 coassemblyEnvironmentalOpen in IMG/M
3300029915III_Bog_E1 coassemblyEnvironmentalOpen in IMG/M
3300029922III_Fen_E1 coassemblyEnvironmentalOpen in IMG/M
3300029939I_Bog_E3 coassemblyEnvironmentalOpen in IMG/M
3300029999I_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030051Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_2EnvironmentalOpen in IMG/M
3300030114I_Fen_E2 coassemblyEnvironmentalOpen in IMG/M
3300030506Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_1EnvironmentalOpen in IMG/M
3300030688II_Bog_N2 coassemblyEnvironmentalOpen in IMG/M
3300031239Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaGHost-AssociatedOpen in IMG/M
3300031247Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaGHost-AssociatedOpen in IMG/M
3300031524Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3EnvironmentalOpen in IMG/M
3300031669Soil microbial communities from Risofladan, Vaasa, Finland - TR-1EnvironmentalOpen in IMG/M
3300031726Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031759Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003PEnvironmentalOpen in IMG/M
3300031813Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - 1anoAEnvironmentalOpen in IMG/M
3300032805Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2EnvironmentalOpen in IMG/M
3300032895Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3EnvironmentalOpen in IMG/M
3300032896Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4EnvironmentalOpen in IMG/M
3300032898Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1EnvironmentalOpen in IMG/M
3300033134Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2EnvironmentalOpen in IMG/M
3300033402Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MNEnvironmentalOpen in IMG/M
3300033405Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MYEnvironmentalOpen in IMG/M
3300033755Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB26FY SIP fractionEnvironmentalOpen in IMG/M
3300033823Peat soil microbial communities from Stordalen Mire, Sweden - 714 S3 30-34EnvironmentalOpen in IMG/M
3300033824Peat soil microbial communities from Stordalen Mire, Sweden - 714 S2 5-9EnvironmentalOpen in IMG/M
3300033982Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB22AY SIP fractionEnvironmentalOpen in IMG/M
3300034130Peat soil microbial communities from wetlands in Alaska, United States - Collapse_03_16EnvironmentalOpen in IMG/M
3300034282Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
WSSedB1CaDRAFT_1007206123300000313WetlandGILVVVIVAASFIADYKWRQWMAARRRERQSGER*
JGI20214J14112_105691023300001279WetlandMKIFLGILAVLIVVASFFADYKWRQWMATRRHNRR*
Ga0070684_10074825923300005535Corn RhizosphereMILLFAILAIVFIAGSFFADYKWRQWMAARRADRDSDRRS*
Ga0068856_10029776833300005614Corn RhizosphereMILLFAILAIVLIAGSFFADYKWRQWMAARRADRD
Ga0068870_1071279413300005840Miscanthus RhizosphereAILAIVLIAGSFFADYKWRQWMAARRADRDSDRRS*
Ga0070715_1099813123300006163Corn, Switchgrass And Miscanthus RhizosphereMILLFAILAVVLIAGSFFADYKWRQWMAARRADRDSDRRS*
Ga0116114_108618523300009630PeatlandMKIIIAIFAAVLIAAFLFADYQWRRWMATRRRDRQ*
Ga0116118_108290223300009637PeatlandMKIFIAILAAVFIAAFLFADCKWRQWMAARRRDRQ*
Ga0116228_1025852223300009701Host-AssociatedVKVFLGIAAVVLIAFSIAADYAWKRWMAARRRERDRG*
Ga0136806_100358243300010386SedimentMKIFLAIVAVLLVAGSIVADYKWRGWMAARKQEREDPHRRA*
Ga0150984_10611948023300012469Avena Fatua RhizosphereMKILLLIAVLLIIAGSLFADYKWRRWIAERRRDRDEERRA*
Ga0157378_1221383223300013297Miscanthus RhizosphereILLFAILAIVLSAGSFFADYKWRQWMAARRADRDSDRRS*
Ga0181539_100839193300014151BogMKIFIAFLAAVFIAAFLFADYKWRQWMAARRRDRQ*
Ga0181539_116300823300014151BogMKILLAILAAVLAAALLFADYKWRQWMAARRRDRQ*
Ga0181533_101578583300014152BogMKILLAILAAVLAAALLFADYKWRQWIAARRRARQ*
Ga0181527_100393393300014153BogMKIFIAILAAVFIAAFLFADYKWRQWMAARRRDRQ*
Ga0181517_1002629143300014160BogMKIFLGVLAVLVVAASVFADYKWRQWMAARRRDRQ*
Ga0181517_1004902323300014160BogMKIFLGILALVLVALSVFADYKWRRWMAARRRDRQ*
Ga0181517_1027846113300014160BogMKILLGILVVLAIAASLFADYKWRQWMTSRRRDRQ*
Ga0181529_1002434063300014161BogMKILLILVGSVVVLASFFADYKWRQWMAKRRRERQ*
Ga0181529_1016766123300014161BogMKIFLGVLAVLFVIASFVADYKWRQWMAARRRDRQ*
Ga0181529_1028017523300014161BogMRILFGIVAVIVVAALAFADYKWRQWMAARRRDRQ*
Ga0181529_1041788423300014161BogMKIFLGVLAVLVVAASVFADYKWRQWMAARRRNRQ*
Ga0181529_1070676913300014161BogMKIFLGLLALLLVAASLFADYKWRQWMNARRRDRQ*
Ga0181538_1043623813300014162BogMKIFIAFLAAVFIAAFLFADCKWRQWMAARRRDRQ*
Ga0181531_10001200103300014169BogMKILFGILAVVLVAASVFADYKWRQWMAARRRDRQ*
Ga0181531_1084030423300014169BogMKIFLAIVAGIVVAALLVGDYKWRQWMAARRRDRQ*
Ga0181535_1003161233300014199BogMKIFLGILALVLVAATVFADYKWRQWMAARRRDRQ*
Ga0181535_1070991823300014199BogMKIFLGILAVLIVAVSLVADYKWRQWMAVRRRNRK*
Ga0181526_1007271513300014200BogMKIIIAIFAAVLIAAFLFADYQWRRWMATHRRDRQ*
Ga0181537_1046988613300014201BogMKLILGILALLLVAASVFADYKWREWMAARKRNRE*
Ga0163163_1014450123300014325Switchgrass RhizosphereMVLLFAILAIVFIAGSFFADYKWRQWMAARRADRDSDRRS*
Ga0182014_10000031493300014491BogMKLFLFILAVVVVAVSLFADYKWRRWMAARRDRK*
Ga0182014_10000373503300014491BogMKIVFFFVVLALIAALVFADYKWREWMSARRRDRQ*
Ga0182014_1000803573300014491BogMKILIGILATLLVASILFVDYKWRQWMAARRRDRQ*
Ga0182014_1001211593300014491BogMKILIGLLAVLIVAASIFADYKWRQWMAARRRNRQ*
Ga0182014_1001622163300014491BogMKIFLGILAAVLVAASLFADYKWRRWMAARRRDRQ*
Ga0182013_1000500333300014492BogVKILLGILAVLVIAASFFADYKWRQWIAVRRRDRE*
Ga0182013_1003397533300014492BogMNILLAVLVVLVVAASLFADYKWRRWMADRRRDRQ*
Ga0182013_1005268843300014492BogMKIFLGILAVVLVALSVFADYKWRRWMAARRRNRQ*
Ga0182013_1034700013300014492BogMKIFLGILAVILVVLSVFADYKWRRWMAARRRDRQ*
Ga0182013_1037127423300014492BogMKIFFGILAVLFVAVSLVADYKWRQWMAARRRDRQ*
Ga0182016_1003911823300014493BogMNVILGILAVVVVAAAVVADYKWRRWMAARRRDRQ*
Ga0182016_1014246523300014493BogMVMKIFLAVLAGIVVAALLVGDCKWRQWMAARRRDRQ*
Ga0182016_1076640823300014493BogMKILLGILGILALILVAASVYADYKWRQWMAARRRDRQ*
Ga0182017_1017463823300014494FenMKIFLIILVVVLVAALAIADYKWRQWMAARRRDRQ*
Ga0182019_1048024423300014498FenMKILIGILAVLLVSAFLFADYKWRRWMAARRRDRQ*
Ga0182012_1001043623300014499BogMKILLAILAVIAVAALLVGDYKWRQWMAARRRDRQ*
Ga0182024_1291085013300014501PermafrostMFLLAILAVAVVVASLIADYKWRQWMAARKRDRER*
Ga0182021_1304229623300014502FenMKTFLIILVVILVAALAIADYKWRQWMAARKRDRQ*
Ga0181525_10000144383300014654BogMKIFLGILAVFLIAASLFADYKWRRWMAARRRDRQ*
Ga0181519_1049560523300014658BogMKIFLGILALVLVAASVFADYKWRQWMAARRRNRQ*
Ga0182030_10004321253300014838BogMKLFLGILAIILVAASLFADYKWRQWMAARRRDRQ*
Ga0182030_1014043323300014838BogMKIIFGILAVIVIAAAVVGDYKWRQWMAARRRDRQ*
Ga0182030_1028975033300014838BogMKILFGILAVVLVVASLFADYKWRKWMTARRRNRQ*
Ga0182030_1070350623300014838BogMKILFGIVAVILVVASLVADYKWRQWMASKRRDRQ*
Ga0182030_1072503423300014838BogMKLLLITLALLLVAALVFADYKWRQWMATRRRDRDNRP*
Ga0182030_1120170513300014838BogMKILLAILAVIAVAALLVCDYKWRQWMAARRRDRQ*
Ga0182027_1063986223300014839FenMKIFLGILALVLVALSVFADYKWHRWMAARRRDRQ*
Ga0187854_1029913023300017938PeatlandMKIFIAFLAAVFIAAFLFADYKWRQWMAARRRDRQ
Ga0187850_1020328613300017941PeatlandMKIIIAIFAAELIAAFLFADYQWRRWMATRRRDRQ
Ga0187847_1016807913300017948PeatlandMKIFLGVLAVLVVAASVFADYKWRQWMAARRRNRQ
Ga0187847_1067053823300017948PeatlandMKFLLGILSVLAIAASLFADYKWRRWIAGRRRERQ
Ga0187847_1085346323300017948PeatlandMKILFGILAVLVVAASLFVDYKWRQWMAARRRDRQ
Ga0181520_10000294363300017988BogMKIFLGVLAVLFVIASFVADYKWRQWMAARRRDRQ
Ga0181520_10000678113300017988BogMKIFLGILALVLVAASVFADYKWRQWMAARRRNRQ
Ga0181520_1001651553300017988BogMKILLGILVVLAIAASLFADYKWRQWMTSRRRDRQ
Ga0181520_1023554113300017988BogMKILLILVGSVVVLASFFADYKWRQWMAKRRRERQ
Ga0181520_1076278823300017988BogMKIILGILAILIIAASLFADYKWRQRMAARRRDRQ
Ga0187888_114257923300018008PeatlandMKILIAILAVILVAASIFADYKWRRWMDARRRDRQ
Ga0187869_1024791723300018030PeatlandMKIIIAIFAAVLIAAFLFADYQWRRWMATRRRDRQ
Ga0187890_1000083863300018044PeatlandMKILFGILALLAVAASFFADYKWRQWMAAHRRDHQ
Ga0187890_1022448713300018044PeatlandMKIVLVIVVAVLVAGSFVADYKGRQWMAARRRDRQ
Ga0182025_115914213300019786PermafrostMFLLAILAVAVVVASLIADYKWRQWMAARKRDRER
Ga0210396_1146677413300021180SoilTDNRLGPMKIALIIVALVVVAALAFADYKWRRWVADRRRHHQ
Ga0212088_1000065733300022555Freshwater Lake HypolimnionMTIVLAILVIILVVASFFADYKWRQWMAARRRDRQ
Ga0224531_100272233300022849SoilMKIFLGILAVFIVAASFFADYKWRQWMAARRRDRR
Ga0224552_100432023300022850SoilMNVILGILAVVVVAAAVVADYKWRRWMAARRRDRQ
Ga0224528_100044663300022861SoilMKIFLGILALVLVALSVFADYKWRRWMAARRRDRQ
Ga0224528_100830343300022861SoilMKVFLGILAVFIVAASFFADYKWRQWMAARRRDRR
Ga0224528_101501613300022861SoilMKIFLGILALVLVALSVFADYKWHRWMAARRRDRQ
Ga0224527_108536213300022877SoilAVNCLLMKIFLGILAVVLVALSVFADYKWRRWMAARRRNRQ
(restricted) Ga0224519_103050413300023060SoilMKILFGILAVVLVVASLFADYKWRKWMTARRRNRQ
Ga0224554_112411223300023068SoilMKIVLGVLALVLVAASLLADYKWRQWMAERRRNRE
Ga0224555_103775823300023088SoilMKIFLGILAVLIVAVSFFADYKWRQWMTARRRDRR
Ga0224529_100003773300023247SoilMKIFIGILAAVVVAASLFADYKWRQWMAARRRDRQ
Ga0224535_107835623300023258SoilMKILIGILAVLLVSAFLFADYKWRRWMAARRRDRQ
Ga0208191_109871523300025496PeatlandMKIFIAILAAVFIAAFLFADCKWRQWMAARRRDRQ
Ga0207659_1122434313300025926Miscanthus RhizosphereLLFAILAIVLIAGSFFADYKWRQWMAARRADRDSDRRS
Ga0207701_1021298033300025930Corn, Switchgrass And Miscanthus RhizosphereMILLFAILAIVFIAGSFFADYKWRQWMAARRADRDSDRRS
Ga0207658_1027315513300025986Switchgrass RhizosphereLFAILAIVLIAGSFFADYKWRQWMAARRADRDSDRRS
Ga0207677_1022196033300026023Miscanthus RhizosphereILLFAILAIVLIAGSFFADYKWRQWMAARRADRDSDRRS
Ga0207676_1178335213300026095Switchgrass RhizosphereMILLFAILAIVLIAGSFFADYKWRQWMAARRPDRDSDRRS
Ga0209039_1001278043300027825Bog Forest SoilMKIILGILAALIIAVLLFADYKWRQWMAARRRDRQ
Ga0209039_1037104123300027825Bog Forest SoilMKLLLILAAAVLVAVSFYADYKWRQWMANRRRDRQ
Ga0255355_100723413300028068SoilFMKIFLGILALVLVALSVFADYKWHRWMAARRRDRQ
Ga0255352_102223423300028082SoilPFMKIFLGILALVLVALSVFADYKWRRWMAARRRDRQ
Ga0302149_105770823300028552BogMVMKIFLAVLAGIVVAALLVGDYKWRQWMAARRRDRQ
Ga0302144_1001417423300028560BogMNVILGILAVVVVAAAVVADYKWRRWMAARRRYRQ
Ga0302144_1003495323300028560BogVKILLAILAVIVIAALLVGDYKWRQWMAARRRDRQ
Ga0302144_1010765713300028560BogMVMKIFLAVLAGIVVAALLVGDCKWRQWMAARRRDRQ
Ga0302145_1002709733300028565BogMRILFGIVAVIVVAALAFADYKWRQWMAARRRERR
Ga0302145_1007417213300028565BogILCNPEMVMKIFLAVLAGIVVAALLVGDYKWRQWMAARRRDRQ
Ga0302166_1012226323300028652FenMMFVIIAVVVALVAASVFGDYKWRQWMAARRRDRQ
Ga0302156_1006198933300028748BogMKILLAILAVIAVAALLVGDYKWRQWMAARRRDRQ
Ga0302157_1031961713300028813BogEYAMKIFLGILAVAVIAAAAVGDYKWRQWMAARRRDRQ
Ga0247275_103586633300029817SoilMKIFLGILAVVLVAVSLFADYKWRRWIAARRRDRQ
Ga0311361_1010448343300029911BogMKIFLGILAVAVIAAAAVGDYKWRQWMAARRRDRQ
Ga0311362_1006169913300029913BogCDPGYAMKIIFGILAVIVIAAAVVGDYKWRQWMAARRRDRQ
Ga0311358_1101747623300029915BogPQFSAKPNSCDPGYAMKIIFGILAVIVIAAAVVGDYKWRQWMAARRRDRQ
Ga0311363_1027397423300029922FenMKIFLGILAIVLVAASVFADYKWRRWMAARRRDRE
Ga0311328_1114485313300029939BogMKIFLAVLAVIVVAALLVGDYKWRQWMAARRRDRQ
Ga0311339_1086320523300029999PalsaNVMKLILGIAAGVVIAASLFADYKWRRWMADRRRDRER
Ga0302195_1035686923300030051BogMKIIFGILAVIVIAAAVVGDYKWRQWMAARRRDRQ
Ga0311333_10000016553300030114FenMKILLGILVVLAVAASFFADYKWRQWMANHRRDRE
Ga0311333_1014091113300030114FenMDAMKILLGILVILTVVASFFADYKWRQWMTNRRRDRQ
Ga0302194_1008049733300030506BogCLLMKIFLGILAVVLVALSVFADYKWRRWMAARRRNRQ
Ga0311345_1097067613300030688BogMKILLGILAIVVIVASFLVDYKWRQWIAARRASHPRDRQ
Ga0265328_1010993033300031239RhizosphereMKILIAILAAVLIAAFLFADYKWRQWMAARRRDRK
Ga0265328_1030176413300031239RhizosphereMKWILAIVLLALVVGSFIADYKWRQWMAARKRDRQ
Ga0265340_1032317223300031247RhizosphereDPEEAMKILFGIIVILAIAASLFADYKWRQWIADHRRDRQ
Ga0302320_1030507023300031524BogMKIFLAVLAVIAVAALLVGDYKWRQWMAARRRDRQ
Ga0307375_1017123433300031669SoilMKIILGIIALVILAGSLFADYKWRRWMAERRRERE
Ga0307375_1024769623300031669SoilMKIFLGILAVVLVVASFFADYKWRQWMATRRRNRQ
Ga0302321_10028506123300031726FenMKIFLGVLAVLAIAASFFADYKWRQWMAARRRERP
Ga0307477_1100918013300031753Hardwood Forest SoilMKVLLAIVAAVIVAASLFADYKWRRWMAARRAERRDYN
Ga0316219_104103033300031759FreshwaterMMETAMKIFLGIVALVCVAASLFADYKWRRWIAARRRDRQ
Ga0316217_10000407303300031813FreshwaterMKLILGILALLLVAVSVFADYKWRQWMAARRRDRQD
Ga0316217_1007142133300031813FreshwaterMKLLLGILALLFVAVSVFADYKWRQWMAARRRDRH
Ga0316217_1031076623300031813FreshwaterMETAMKIFLGIVALVCVAASLFADYKWRRWIAARRRDRQ
Ga0335078_1012325133300032805SoilMKYLLITAVVLVVAASLFADYKWRRWLAERKRDRER
Ga0335074_1044074233300032895SoilMRVKIVLGIVVLAIVAVSLFADYKWRQWMAERKRDRE
Ga0335075_1013103953300032896SoilMMIFFAILAPVLVAALLFADRKWRQSIAARRRDRQ
Ga0335072_1028170623300032898SoilMKVLAAIVVVLLVVATLVADYAWRQWMAARRRDRQE
Ga0335073_1069763523300033134SoilMKIVLFVAAAVVLAASLFADYKWRRWMEARKREREDQDRR
Ga0326728_10000026243300033402Peat SoilMKIILGILAILIIALSLFADYKWRQWMAARHRDRQ
Ga0326728_10000397793300033402Peat SoilMAMKPMLGILVVVLVAGALLADRKWRQWMAARRRERQ
Ga0326728_10002771533300033402Peat SoilMKVFVAILAVVLVAASIFADYKWRRWMDARRRDRE
Ga0326728_10004503223300033402Peat SoilMMKIFIVILAVALVAAFLFADYKWRRWMAARRRDRE
Ga0326728_1001113163300033402Peat SoilMKLILGTLVIVLVIAALLADYKWRQWMAARRRNRS
Ga0326728_10017324133300033402Peat SoilMKVFVAILVVVLVAASIFADYKWRRWMDARRRDRE
Ga0326728_1005159033300033402Peat SoilMRILFGIVAVIVVAALAFADYKWRQWMAARRRDRQ
Ga0326728_1018021223300033402Peat SoilMKIFLVILAVVLVAALGFADFKWRQWMAARRRDRQ
Ga0326727_10006717283300033405Peat SoilMPQSCDPEETMKIILGILAILIIAASLFADYKWRHWIAARRRDRQ
Ga0326727_1102893523300033405Peat SoilMKIFLGILVVLAIAASLFADYKWRRWMAARRRDRQ
Ga0371489_0216995_400_5073300033755Peat SoilMKILLAILAAVLAAALLFADYKWRQWMAARRRDRQ
Ga0334837_030814_466_5733300033823SoilMKILIGILATILVAAFLFVDYKWRQWMAARRRDRQ
Ga0334840_133138_1_1173300033824SoilFLGILAVLVIAATFFADYKWRQWIAARRRDRQSPPDSF
Ga0371487_0207727_1_1203300033982Peat SoilMKIFLGILAIAVIAASLFADYKWRRWMAARESERNRSRQ
Ga0370494_000956_5796_59033300034130Untreated Peat SoilMKIFLGILAVILVVLSVFADYKWRRWMAARRRDRQ
Ga0370492_0349424_494_5983300034282Untreated Peat SoilMTVFLGILALLLVAASLVADYKWRQWMAARRRDRD
Ga0370492_0456318_383_4903300034282Untreated Peat SoilMKIVLIVVVLVLVAASVFADYKWREWMATRRRDRQ

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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