Metagenome / Metatranscriptome Family F046040

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F046040
Family Type	Metagenome / Metatranscriptome
Number of Sequences	152
Average Sequence Length	50 residues
Representative Sequence	MRLLGSILLLIGMGSAAFATVPEISPASAGSAIALISGAVLVMRGRRKK
Number of Associated Samples	91
Number of Associated Scaffolds	129

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	79.47 %
% of genes near scaffold ends (potentially truncated)	23.68 %
% of genes from short scaffolds (< 2000 bps)	79.61 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (56.579 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil (15.790 % of family members)
Environment Ontology (ENVO)	Unclassified (41.447 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (57.895 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 51.95% β-sheet: 0.00% Coil/Unstructured: 48.05%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 129 Family Scaffolds
PF09721	Exosortase_EpsH	10.85
PF13483	Lactamase_B_3	4.65
PF00753	Lactamase_B	2.33
PF04116	FA_hydroxylase	1.55
PF12844	HTH_19	1.55
PF12727	PBP_like	1.55
PF00069	Pkinase	1.55
PF02705	K_trans	0.78
PF12796	Ank_2	0.78
PF12697	Abhydrolase_6	0.78
PF00135	COesterase	0.78
PF11746	DUF3303	0.78
PF01145	Band_7	0.78
PF07690	MFS_1	0.78
PF02517	Rce1-like	0.78
PF00685	Sulfotransfer_1	0.78

COG ID	Name	Functional Category	% Frequency in 129 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	6.20
COG3000	Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily	Lipid transport and metabolism [I]	1.55
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	0.78
COG2272	Carboxylesterase type B	Lipid transport and metabolism [I]	0.78
COG3158	K+ uptake protein Kup	Inorganic ion transport and metabolism [P]	0.78
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.58 %
All Organisms	root	All Organisms	43.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.58 %
cellular organisms	root	All Organisms → cellular organisms	43.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.58 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	43.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.58 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	28.95 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.66 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.58 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	16.45 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	3.29 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.66 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.58 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	11.84 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.63 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.32 %
unclassified Terriglobia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia	0.66 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28	0.66 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.66 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.58 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	7.24 %
unclassified Bryobacterales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales	2.63 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.63 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.32 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.66 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.66 %
Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_56_15	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_56_15	0.66 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.58 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	7.24 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	2.63 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.63 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.32 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.66 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.66 %
Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_56_15	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_56_15	0.66 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.58 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	7.24 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	2.63 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.63 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.32 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.66 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.66 %
Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_56_15	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_56_15	0.66 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.58 %
Candidatus Sulfopaludibacter sp. SbA6	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	5.92 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	2.63 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.63 %
Candidatus Sulfopaludibacter sp. SbA4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1.32 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.32 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.66 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.66 %
Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_56_15	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_56_15	0.66 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28	0.66 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10026896	All Organisms → cellular organisms → Bacteria	3441	Open in IMG/M
3300000567\|JGI12270J11330_10059680	Not Available	1976	Open in IMG/M
3300000567\|JGI12270J11330_10059680	Not Available	1976	Open in IMG/M
3300000567\|JGI12270J11330_10059680	Not Available	1976	Open in IMG/M
3300004119\|Ga0058887_1234539	Not Available	520	Open in IMG/M
3300004463\|Ga0063356_100293529	All Organisms → cellular organisms → Bacteria	2009	Open in IMG/M
3300004961\|Ga0072333_1142453	Not Available	603	Open in IMG/M
3300004961\|Ga0072333_1142453	Not Available	603	Open in IMG/M
3300004964\|Ga0072331_1173529	Not Available	689	Open in IMG/M
3300005329\|Ga0070683_100021550	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	5752	Open in IMG/M
3300005329\|Ga0070683_100075546	All Organisms → cellular organisms → Bacteria	3148	Open in IMG/M
3300005329\|Ga0070683_100831344	Not Available	886	Open in IMG/M
3300005332\|Ga0066388_100340349	Not Available	2146	Open in IMG/M
3300005334\|Ga0068869_100031534	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3729	Open in IMG/M
3300005334\|Ga0068869_101213250	Not Available	663	Open in IMG/M
3300005334\|Ga0068869_101213250	Not Available	663	Open in IMG/M
3300005338\|Ga0068868_100265105	All Organisms → cellular organisms → Bacteria	1450	Open in IMG/M
3300005338\|Ga0068868_101346068	Not Available	664	Open in IMG/M
3300005340\|Ga0070689_101938476	Not Available	538	Open in IMG/M
3300005345\|Ga0070692_10458968	Not Available	817	Open in IMG/M
3300005364\|Ga0070673_100150754	All Organisms → cellular organisms → Bacteria	1969	Open in IMG/M
3300005364\|Ga0070673_100150754	All Organisms → cellular organisms → Bacteria	1969	Open in IMG/M
3300005434\|Ga0070709_10785219	Not Available	746	Open in IMG/M
3300005434\|Ga0070709_11528417	Not Available	542	Open in IMG/M
3300005434\|Ga0070709_11528417	Not Available	542	Open in IMG/M
3300005436\|Ga0070713_100304074	All Organisms → cellular organisms → Bacteria	1469	Open in IMG/M
3300005439\|Ga0070711_100616140	Not Available	907	Open in IMG/M
3300005439\|Ga0070711_100616140	Not Available	907	Open in IMG/M
3300005439\|Ga0070711_100737517	Not Available	832	Open in IMG/M
3300005439\|Ga0070711_101311637	Not Available	628	Open in IMG/M
3300005459\|Ga0068867_100507944	Not Available	1037	Open in IMG/M
3300005535\|Ga0070684_100793988	All Organisms → cellular organisms → Bacteria	885	Open in IMG/M
3300005538\|Ga0070731_10487910	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28	820	Open in IMG/M
3300005539\|Ga0068853_100056452	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	3386	Open in IMG/M
3300005539\|Ga0068853_100541447	Not Available	1102	Open in IMG/M
3300005542\|Ga0070732_10975058	Not Available	518	Open in IMG/M
3300005543\|Ga0070672_101534846	Not Available	597	Open in IMG/M
3300005547\|Ga0070693_101376138	All Organisms → cellular organisms → Bacteria → Acidobacteria	548	Open in IMG/M
3300005564\|Ga0070664_100051511	All Organisms → cellular organisms → Bacteria → Acidobacteria	3486	Open in IMG/M
3300005564\|Ga0070664_101411240	Not Available	658	Open in IMG/M
3300005615\|Ga0070702_101473357	Not Available	559	Open in IMG/M
3300005719\|Ga0068861_101431477	All Organisms → cellular organisms → Bacteria → Acidobacteria	676	Open in IMG/M
3300005829\|Ga0074479_10573231	All Organisms → cellular organisms → Bacteria → Acidobacteria	1946	Open in IMG/M
3300005829\|Ga0074479_10573231	All Organisms → cellular organisms → Bacteria → Acidobacteria	1946	Open in IMG/M
3300005841\|Ga0068863_102730332	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	502	Open in IMG/M
3300006163\|Ga0070715_10572899	Not Available	658	Open in IMG/M
3300006237\|Ga0097621_100141868	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	2053	Open in IMG/M
3300006237\|Ga0097621_101501419	Not Available	639	Open in IMG/M
3300006358\|Ga0068871_101418150	Not Available	655	Open in IMG/M
3300006638\|Ga0075522_10113462	All Organisms → cellular organisms → Bacteria	1451	Open in IMG/M
3300006755\|Ga0079222_12065304	Not Available	562	Open in IMG/M
3300006880\|Ga0075429_101864474	Not Available	521	Open in IMG/M
3300006881\|Ga0068865_100285898	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	1314	Open in IMG/M
3300006893\|Ga0073928_10613265	Not Available	767	Open in IMG/M
3300006893\|Ga0073928_10679450	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_56_15	720	Open in IMG/M
3300006954\|Ga0079219_11831428	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	569	Open in IMG/M
3300009098\|Ga0105245_10205994	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	1891	Open in IMG/M
3300009098\|Ga0105245_10530338	Not Available	1197	Open in IMG/M
3300009098\|Ga0105245_11307244	Not Available	774	Open in IMG/M
3300009098\|Ga0105245_12070813	Not Available	623	Open in IMG/M
3300009148\|Ga0105243_10757073	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	953	Open in IMG/M
3300009148\|Ga0105243_12466657	Not Available	559	Open in IMG/M
3300009174\|Ga0105241_10125450	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	2072	Open in IMG/M
3300009176\|Ga0105242_11714071	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	665	Open in IMG/M
3300009176\|Ga0105242_13115860	Not Available	514	Open in IMG/M
3300009177\|Ga0105248_13387709	Not Available	506	Open in IMG/M
3300009523\|Ga0116221_1533908	Not Available	515	Open in IMG/M
3300009551\|Ga0105238_10246385	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	1765	Open in IMG/M
3300009551\|Ga0105238_11478975	Not Available	708	Open in IMG/M
3300009551\|Ga0105238_13041405	All Organisms → cellular organisms → Bacteria → Acidobacteria	503	Open in IMG/M
3300009839\|Ga0116223_10038120	All Organisms → cellular organisms → Bacteria	3215	Open in IMG/M
3300010375\|Ga0105239_11490778	Not Available	782	Open in IMG/M
3300010375\|Ga0105239_13529101	Not Available	508	Open in IMG/M
3300010379\|Ga0136449_100000591	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	103277	Open in IMG/M
3300010379\|Ga0136449_100000591	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	103277	Open in IMG/M
3300010379\|Ga0136449_100196766	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	3843	Open in IMG/M
3300010379\|Ga0136449_100196766	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	3843	Open in IMG/M
3300010379\|Ga0136449_100893979	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1449	Open in IMG/M
3300010400\|Ga0134122_10211922	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	1613	Open in IMG/M
3300011119\|Ga0105246_11595608	Not Available	616	Open in IMG/M
3300011120\|Ga0150983_14049606	Not Available	794	Open in IMG/M
3300011120\|Ga0150983_14465150	Not Available	1237	Open in IMG/M
3300011120\|Ga0150983_14465150	Not Available	1237	Open in IMG/M
3300011120\|Ga0150983_15878294	Not Available	559	Open in IMG/M
3300011120\|Ga0150983_15878294	Not Available	559	Open in IMG/M
3300012931\|Ga0153915_11203349	Not Available	885	Open in IMG/M
3300012931\|Ga0153915_11203349	Not Available	885	Open in IMG/M
3300012982\|Ga0168317_1003605	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6582	Open in IMG/M
3300012982\|Ga0168317_1003605	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6582	Open in IMG/M
3300013100\|Ga0157373_11082435	Not Available	601	Open in IMG/M
3300013296\|Ga0157374_10155839	All Organisms → cellular organisms → Bacteria	2223	Open in IMG/M
3300013296\|Ga0157374_11171627	Not Available	790	Open in IMG/M
3300013306\|Ga0163162_11069472	Not Available	914	Open in IMG/M
3300013308\|Ga0157375_11822192	Not Available	722	Open in IMG/M
3300014325\|Ga0163163_10724122	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	1058	Open in IMG/M
3300014325\|Ga0163163_10866281	All Organisms → cellular organisms → Bacteria → Acidobacteria	967	Open in IMG/M
3300014501\|Ga0182024_10659386	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	1299	Open in IMG/M
3300014969\|Ga0157376_10276648	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	1579	Open in IMG/M
3300014969\|Ga0157376_10276648	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	1579	Open in IMG/M
3300017959\|Ga0187779_10438948	Not Available	857	Open in IMG/M
3300017959\|Ga0187779_10734613	Not Available	670	Open in IMG/M
3300020580\|Ga0210403_11322968	Not Available	549	Open in IMG/M
3300025899\|Ga0207642_10350703	Not Available	870	Open in IMG/M
3300025906\|Ga0207699_10733993	Not Available	724	Open in IMG/M
3300025906\|Ga0207699_10733993	Not Available	724	Open in IMG/M
3300025906\|Ga0207699_11108466	Not Available	586	Open in IMG/M
3300025907\|Ga0207645_10366222	All Organisms → cellular organisms → Bacteria → Acidobacteria	966	Open in IMG/M
3300025911\|Ga0207654_10846879	All Organisms → cellular organisms → Bacteria → Acidobacteria	662	Open in IMG/M
3300025913\|Ga0207695_11249365	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	623	Open in IMG/M
3300025922\|Ga0207646_10366415	Not Available	1302	Open in IMG/M
3300025927\|Ga0207687_10684760	Not Available	869	Open in IMG/M
3300025927\|Ga0207687_10684760	Not Available	869	Open in IMG/M
3300025927\|Ga0207687_11650392	Not Available	550	Open in IMG/M
3300025933\|Ga0207706_10070331	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	3078	Open in IMG/M
3300025935\|Ga0207709_10037908	All Organisms → cellular organisms → Bacteria	2867	Open in IMG/M
3300025935\|Ga0207709_10268106	Not Available	1255	Open in IMG/M
3300025935\|Ga0207709_10706983	Not Available	807	Open in IMG/M
3300025935\|Ga0207709_11065204	Not Available	663	Open in IMG/M
3300025936\|Ga0207670_10834748	Not Available	769	Open in IMG/M
3300025938\|Ga0207704_10299697	All Organisms → cellular organisms → Bacteria → Acidobacteria	1231	Open in IMG/M
3300025944\|Ga0207661_10043094	All Organisms → cellular organisms → Bacteria	3560	Open in IMG/M
3300025961\|Ga0207712_10918716	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	774	Open in IMG/M
3300026023\|Ga0207677_10852713	All Organisms → cellular organisms → Bacteria → Acidobacteria	819	Open in IMG/M
3300026023\|Ga0207677_11176830	Not Available	701	Open in IMG/M
3300026078\|Ga0207702_12025242	All Organisms → cellular organisms → Bacteria → Acidobacteria	566	Open in IMG/M
3300027842\|Ga0209580_10638610	Not Available	527	Open in IMG/M
3300027854\|Ga0209517_10005407	All Organisms → cellular organisms → Bacteria → Acidobacteria	16276	Open in IMG/M
3300027854\|Ga0209517_10014647	All Organisms → cellular organisms → Bacteria	7992	Open in IMG/M
3300027854\|Ga0209517_10014647	All Organisms → cellular organisms → Bacteria	7992	Open in IMG/M
3300027854\|Ga0209517_10014647	All Organisms → cellular organisms → Bacteria	7992	Open in IMG/M
3300027854\|Ga0209517_10014647	All Organisms → cellular organisms → Bacteria	7992	Open in IMG/M
3300027854\|Ga0209517_10014647	All Organisms → cellular organisms → Bacteria	7992	Open in IMG/M
3300027905\|Ga0209415_10023813	All Organisms → cellular organisms → Bacteria → Acidobacteria	9254	Open in IMG/M
3300028792\|Ga0307504_10096459	Not Available	934	Open in IMG/M
3300028800\|Ga0265338_10569860	Not Available	791	Open in IMG/M
3300028800\|Ga0265338_10569860	Not Available	791	Open in IMG/M
3300030002\|Ga0311350_10442132	Not Available	1167	Open in IMG/M
3300031057\|Ga0170834_100419709	Not Available	605	Open in IMG/M
3300031057\|Ga0170834_102346640	Not Available	649	Open in IMG/M
3300031231\|Ga0170824_116860232	Not Available	520	Open in IMG/M
3300031231\|Ga0170824_126263382	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	980	Open in IMG/M
3300031232\|Ga0302323_101717074	Not Available	710	Open in IMG/M
3300031474\|Ga0170818_102848420	Not Available	532	Open in IMG/M
3300031595\|Ga0265313_10003166	All Organisms → cellular organisms → Bacteria	13586	Open in IMG/M
3300031595\|Ga0265313_10003166	All Organisms → cellular organisms → Bacteria	13586	Open in IMG/M
3300031726\|Ga0302321_102498649	Not Available	603	Open in IMG/M
3300032160\|Ga0311301_10842320	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1249	Open in IMG/M
3300032160\|Ga0311301_10862028	Not Available	1229	Open in IMG/M
3300032160\|Ga0311301_11137972	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	1010	Open in IMG/M
3300032515\|Ga0348332_10772979	Not Available	545	Open in IMG/M
3300033475\|Ga0310811_11070240	Not Available	691	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	55.92%
Host-Associated	Host-Associated	44.08%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	51.97%
Plants	Host-Associated → Plants	44.08%
Aquatic	Environmental → Aquatic	3.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	47.37%
Rhizosphere	Host-Associated → Plants → Rhizosphere	28.95%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.84%
Roots	Host-Associated → Plants → Roots	3.29%
Peat	Environmental → Terrestrial → Peat	2.63%
Freshwater	Environmental → Aquatic → Freshwater	1.32%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.32%
Sediment	Environmental → Aquatic → Sediment	1.32%
Geologic	Environmental → Terrestrial → Geologic	1.32%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.66%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	25.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	21.71%
Loam	Environmental → Terrestrial → Soil → Loam	19.74%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.84%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.24%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	3.29%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.63%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.97%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.32%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.32%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.32%
Mine	Environmental → Terrestrial → Geologic → Mine	1.32%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.66%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	21.71%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.74%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	15.13%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.24%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.61%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.95%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	3.29%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.63%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.32%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.32%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.32%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.32%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.32%
Unclassified	Environmental → Terrestrial → Geologic → Mine → Unclassified	1.32%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.66%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.66%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.66%

Habitat	Taxonomy	Distribution
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	15.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	10.53%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	10.53%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	7.24%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	5.26%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.95%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.29%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.29%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.29%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	2.63%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.97%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.97%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	1.32%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.32%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	1.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.32%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.32%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.32%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.32%
Weathered Mine Tailings	Environmental → Terrestrial → Geologic → Mine → Unclassified → Weathered Mine Tailings	1.32%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.32%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	1.32%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.32%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.32%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.32%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.66%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.66%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.66%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.66%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.66%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.66%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.66%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.66%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.66%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.66%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300004119	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF210 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004961	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 83 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004964	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 77 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005829	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBC	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006638	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012982	Weathered mine tailings microbial communities from Hibbing, Minnesota, USA - DCWfield	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300029954	I_Bog_N3 coassembly	Environmental	Open in IMG/M
3300030002	II_Fen_N1 coassembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031595	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG	Host-Associated	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_100268963	3300000567	Peatlands Soil	MKLSGSVLLLIGMGSFVFGINVPEISPASAGSAIALISGAVLVMRGRRKE*
JGI12270J11330_100596802	3300000567	Peatlands Soil	MKIIGAMLLLVGMGGAAFATGVPEISPASAGSAIALISGAVLVMRGRRKK*
JGI12270J11330_100596804	3300000567	Peatlands Soil	VRLVGSILLLIGVVSAAFATPSVPEISPASAGSAIALISGAVLVMRGRRSK*
JGI12270J11330_100596805	3300000567	Peatlands Soil	MKIIGAMLLLVGMGSAAFASVPEISPASAGSAIALISGAVLVMRGRRSK*
Ga0058887_12345392	3300004119	Forest Soil	SRSISKEIQVKLLGSVLLLIGMGSIAFATPTPEISPASAGSAIALISGAVLVMRGRRKN*
Ga0063356_1002935293	3300004463	Arabidopsis Thaliana Rhizosphere	VKLLGNMLLLIGLGSLAFAQTAPVPEISPASAGSALALVSGVLLVMRGRRK*
Ga0072333_11424531	3300004961	Peatlands Soil	RLVGSILLLIGVVSAAFATPSVPEISPASAGSAIALISGAVLVMRGRRSK*
Ga0072333_11424533	3300004961	Peatlands Soil	VKLIGAMVLLMGMGTFASALNVSAPEISPASAGSAIALIAGAVLVMRGRRKKQNLSKVKETL*
Ga0072331_11735291	3300004964	Peatlands Soil	GDAVRLVGSILLLIGVVSAAFATPSVPEISPASAGSAIALISGAVLVMRGRRSK*
Ga0070683_1000215503	3300005329	Corn Rhizosphere	VLLLIGMGSAAFASPVPEINPASAGSALALISGAVLVMRGRRKK*
Ga0070683_1000755463	3300005329	Corn Rhizosphere	LKLLGYMLLLMGMGSAAFATAVPEINPASASSALALVSGALLVMRGRRKK*
Ga0070683_1008313441	3300005329	Corn Rhizosphere	VKLLGSVLLFIGVGGAAFATAVPEINPASAGSAIALVSGALLVMRGRRKK*
Ga0066388_1003403493	3300005332	Tropical Forest Soil	LKNILGMLLLVLGYSAFASAAIVGAPEVDPASAGSALALLSGAVMVIRGRRRK*
Ga0068869_1000315341	3300005334	Miscanthus Rhizosphere	MLLLMGMGSAAFATAVPEINPASAGSALALVSGALLVMRGRRKK*
Ga0068869_1012132501	3300005334	Miscanthus Rhizosphere	VKLLGSVLLFIGVGSMAFGVTAVPEINPASVGSALALISGALLVMGGRRKK*
Ga0068869_1012132502	3300005334	Miscanthus Rhizosphere	MKLLGSILLLIGVGSVAFAQPAPTPEISPASTGSALALISGALLVMGGRRKK*
Ga0068868_1002651052	3300005338	Miscanthus Rhizosphere	MKLLGSILLLIGVGSVAFAQPAPTPEISPASAGSALALLSGALLVMGGRRRK*
Ga0068868_1013460682	3300005338	Miscanthus Rhizosphere	VKLLGSVLLFIGVGGAAFATAVPEINPASAGSAIALVSGALLVMRGRRK
Ga0070689_1019384762	3300005340	Switchgrass Rhizosphere	MKLLGSILLLIGVGSVAFAQPAPTPEISPASAGSALALLSGLLLVMRGRRRK*
Ga0070692_104589682	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MGMGSAAFGTAVAAPEISPASASSALALVSGVMLVMRGRRK*
Ga0070673_1001507541	3300005364	Switchgrass Rhizosphere	LLFVGVGSMAFGLTAVPEISPASTGSALALISGALLVMGGRRKK*
Ga0070673_1001507542	3300005364	Switchgrass Rhizosphere	MKLLGSILLLIGVGSVAFAQPAPTPEISPASAGSALALISGALLVMGGRRKK*
Ga0070709_107852192	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLGFILLSIGAGSVAFGISVVPEINPAAAGSAIALISGTVLVMRGRRKN*
Ga0070709_115284171	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MKVLGSMLLLIGMASSAMAQVQTPEVSPASAVGALALISGGLLVMRGRRSK*
Ga0070709_115284172	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLGSILLLIGTGSMAFASVPEISPASAGSAIALISGAVLVMRGRRTK*
Ga0070713_1003040741	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VKLLGMMLLLIGVGSVASAIPAAPEISPASAGSALALISGAVLVMRGRRKK*
Ga0070711_1006161401	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	VKLLGMMLLLIGVGSVASAIPAAPEISPASAGSALALISGAVLVIRGRREK*
Ga0070711_1006161402	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MIMKFAGITLVLTGLSGAAMALQVSAPEVSPVSAGSAIALIAGAVLIMRGRRKQ*
Ga0070711_1007375172	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	VKLIGSILLLVGMGSMAFATVPEVSPASAGSAIALISGAVLVMRGRRKK*
Ga0070711_1013116372	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	VKLTGSILLLIGMGCVAFGQPAPTPEVSPASAGSALALIAGAVLVIRGRRKK*
Ga0068867_1005079441	3300005459	Miscanthus Rhizosphere	LKLLGYMLLLMGMGSAAFATAVPEISPASASSALALVSGALLVMRGRKK*
Ga0070684_1007939881	3300005535	Corn Rhizosphere	LLIGMGSAAFASPVPEINPASAGSALALISGAVLVMRGRRKK*
Ga0070731_104879103	3300005538	Surface Soil	MRMKLVGITLLLVGLSSVAMALETTAPEISPVSAGSAVALIAGAVLVMRGRRKN*
Ga0068853_1000564523	3300005539	Corn Rhizosphere	MLLLMGMGSAAFGTAVAAPEISPASASSALALVSGVMLVMRGRRK*
Ga0068853_1005414471	3300005539	Corn Rhizosphere	MLLLMGMGSAAFATAVPEINPASASSALALVSGALLVMRGRRK
Ga0070732_109750581	3300005542	Surface Soil	VKLIGSMLLLVGMGSFAFAITAVPEVSAASAGSAVALISGALLVMRGRRKK*
Ga0070672_1015348462	3300005543	Miscanthus Rhizosphere	PSGRRFTMKLLGSILLLIGVGSVAFAQPAPTPEISPASAGSALALLSGVLLVMGGRRRK*
Ga0070693_1013761382	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	LKLLGYMLLLMGMGSAAFATAVPEINPASASSALALVSGALLVM
Ga0070664_1000515114	3300005564	Corn Rhizosphere	MGMGSAAFGTAVAAPEISPASASSALALVSGVLLVMRGRRK*
Ga0070664_1014112401	3300005564	Corn Rhizosphere	VKLLGSVLLFVGVGSMAFGLTAVPEISPASTGSALALISGALLVMGGRRKK*
Ga0070702_1014733571	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	PSGRRFTMKLLGSILLLIGVGSVAFAQPAPTPEISPASAGSALALISGALLVMGGRRKK*
Ga0068861_1014314771	3300005719	Switchgrass Rhizosphere	LKLVGYMLLLMGMGSAAFATAVPEINPASAGSALALVSGALLVMRGRRKK*
Ga0074479_105732311	3300005829	Sediment (Intertidal)	MKLLATMLLLIGVGSVAFAQPAPTPEISPASAGSALALISGALLVMRGRRKK*
Ga0074479_105732312	3300005829	Sediment (Intertidal)	VKVLGSVLLFIGVASAAFGLVYVATPEISPASAGSALALISGALLVMGGRRKK*
Ga0068863_1027303321	3300005841	Switchgrass Rhizosphere	VKLLGSVLLFIGVGSMAFGVTAVPEINPASVGSALALISGAL
Ga0070715_105728992	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	VKFAGFVLLMMGMGSAAFATAVPEISPASAGSALALVSGALLVMRGGRKK*
Ga0097621_1001418682	3300006237	Miscanthus Rhizosphere	VKLLGTVLLFIGVGGAAFATAVPEISPASAGSAIALISGAVLVMRGRKK*
Ga0097621_1015014192	3300006237	Miscanthus Rhizosphere	VRLLGSVLLFIGVGGAAFATAVPEINPASAGSAIALISGAVLVMRGRRKK*
Ga0068871_1014181502	3300006358	Miscanthus Rhizosphere	LKLLGYMLLLMGMGSAAFATAVPEINPASASSAVALVSGALLVMRGRRKK*
Ga0075522_101134622	3300006638	Arctic Peat Soil	VRILGTTLLLIGMASFVSASVPEISSASAGSALALVSGALLVIRGRRKK*
Ga0079222_120653041	3300006755	Agricultural Soil	VKLLGTALLLIGMGSAAFATVVPEISPVSAGSAIALISGAVLVMRGRRRK*
Ga0075429_1018644742	3300006880	Populus Rhizosphere	MKLLGSVLLFIGVGSIAFGFTPAPVPEISPASASSALALISGALLVMGGRRKK*
Ga0068865_1002858981	3300006881	Miscanthus Rhizosphere	LKLVGYMLLLMGMGSAAFATAVPEIDPASAGSALALVSGALLVMRGRRKK*
Ga0073928_106132652	3300006893	Iron-Sulfur Acid Spring	MVRTLGRVFLLLGMGSFVFATAAVSEVSPAPAGSAVALICGAVLVLRGKR
Ga0073928_106794502	3300006893	Iron-Sulfur Acid Spring	LLGSMLLLSGMGCVAFAQVQTPEISPASTVTALALVSGFLLVMRGRRKK*
Ga0079219_118314281	3300006954	Agricultural Soil	LKTLGMMLLLIGVSGAAFAVTAVPEISPASAGSALALISGAVLVIRGRRKQ*
Ga0105245_102059942	3300009098	Miscanthus Rhizosphere	MLLLMGMGSAAFGTAVAAPEISPASASSALALVSGVLLVMRGRRK*
Ga0105245_105303383	3300009098	Miscanthus Rhizosphere	MKVLGSVLLLIGMASMTFATVAPEVNPASAGSAIALISGAVLVMRGRRKN*
Ga0105245_113072442	3300009098	Miscanthus Rhizosphere	RVKLLGSVLLFIGVGGAAFATAVPEINPASAGSAIALVSGALLVMRGRRKK*
Ga0105245_120708132	3300009098	Miscanthus Rhizosphere	MGMGSAVFGAAVAAPEISPASAGSALAFVSGALMVMRGRRKK*
Ga0105243_107570732	3300009148	Miscanthus Rhizosphere	MSKIVMRRSIVKLLGSVLLFIGVGSMAFGVTAVPEINPASVGSALALISGALLVMGGRRKK*
Ga0105243_124666572	3300009148	Miscanthus Rhizosphere	MLLLMGMGSAAFATAVPEISPASASSALALVSGALLVMRGRKK*
Ga0105241_101254502	3300009174	Corn Rhizosphere	MLLLMGMGSAAFATAVPEINPASASSAVALVSGALLVMRGRRKK*
Ga0105242_117140712	3300009176	Miscanthus Rhizosphere	MAFGLTAVPEISPASTGSALALISGALLVMGGRRKK*
Ga0105242_131158601	3300009176	Miscanthus Rhizosphere	MLLLVGMGSAAFASGPASVPEIGPVSASGAIALIASAVLVMRGRRKK*
Ga0105248_133877092	3300009177	Switchgrass Rhizosphere	MMLLLVGMGSAAFASGPASVPEIGPLSASGAIALIASAVLVMRGRRKK*
Ga0116221_15339081	3300009523	Peatlands Soil	MKIIGAMLLLVGMGSAAFAWVPEISPASAGSAIALISGAVLVMRGRRSK*
Ga0105238_102463852	3300009551	Corn Rhizosphere	MLLLMGMGSAAFATAVPEINPASASSALALVSGALLVMRGRRKK*
Ga0105238_114789752	3300009551	Corn Rhizosphere	KLLGSVLLFIGVGGAAFATAVPEINPASAGSAIALVSGALLVMRGRRKK*
Ga0105238_130414051	3300009551	Corn Rhizosphere	MLLLMGMGSAAFATAVPEISPASASSALALVSGALLVMRG
Ga0116223_100381202	3300009839	Peatlands Soil	MSQWLLIGMGSAAFATPAPEINPASAGSAIALISGVVLVMRGRRSRRY*
Ga0105239_114907782	3300010375	Corn Rhizosphere	KRQLLKSKEKLVVKLLGTVLLFIGVGGAAFATAVPEISPASAGSAIALISGAVLVMRGRKK*
Ga0105239_135291012	3300010375	Corn Rhizosphere	VKLLGMMLLLVGMGSAAFASGPASVPEIGPVSASGAIALIASAVLVMRGRRKK*
Ga0136449_10000059181	3300010379	Peatlands Soil	LIGVVSAAFATPSVPEISPASAGSAIALISGAVLVMRGRRSK*
Ga0136449_10000059182	3300010379	Peatlands Soil	MVLLMGMGTFASALNVSAPEISPASAGSAIALIAGAVLVMRGRRKKQNLSKVKETL*
Ga0136449_1001967665	3300010379	Peatlands Soil	VKLIGSILLLIGVGTAVFATPSVPEINPASAGSAIALISGAVLLMRGRRKK*
Ga0136449_1001967666	3300010379	Peatlands Soil	MKVLGQVLLFIGVGSVAFGGAPPAPEISSASAGSAIALISGAVLVMRGRRKK*
Ga0136449_1008939793	3300010379	Peatlands Soil	MKFVGITLLLMGLSSAAMALQATVPEVSPVSAGSALALIAGAVLVMRGRRKK*
Ga0134122_102119222	3300010400	Terrestrial Soil	MLLLMGMGSAAFAVATVPEINPASAGSALALVSGALLVMRGRRKK*
Ga0105246_115956081	3300011119	Miscanthus Rhizosphere	MKLLGSVLLFIGVGSMAFGFTAVAPEISPASAGSALALISGALLVMGGRRKK*
Ga0150983_140496062	3300011120	Forest Soil	MRLLGSILLLIGMGSAAFATVPEISPASAGSAIALISGAVLVMRGRRKK*
Ga0150983_144651502	3300011120	Forest Soil	MGSAAFASVPEISPASAGSAIALISGAVLVMRGRRKK*
Ga0150983_144651503	3300011120	Forest Soil	LKEIYMELLGSVLLLIGVGGAAFAATPEVSPASAGSAIALISGAVLVMRGRRKK*
Ga0150983_158782941	3300011120	Forest Soil	RSRGNQKSKRSFSMKLLGMVLLFIGLGSAAFGGSPAPEISLGSAGSALTLISGVLLVMGGRRRK*
Ga0150983_158782942	3300011120	Forest Soil	VKLLGGILLLMGMGSIAFATPTPEISPASAGSAIALISGAVLVMRGRRKK*
Ga0153915_112033492	3300012931	Freshwater Wetlands	MKLLGSALLLIGMGCLVFAQPAPVPEISPASAGSALALISGMLLVMRGRRGK*
Ga0153915_112033494	3300012931	Freshwater Wetlands	MLLMIGLGGAAFGISVAVPEISPASAGSALALVSGLVLVMRGRRKK*
Ga0168317_10036056	3300012982	Weathered Mine Tailings	MKLLGSTLLLIGMSSLAFGTSVPEVSSASAGSAIALISGALLVMRGRRKK*
Ga0168317_10036057	3300012982	Weathered Mine Tailings	MKLLGSVLLLIGMSSAAFAQIAPVPEISALTGVNAVCLIAGAVVVMRGRRKR*
Ga0157373_110824351	3300013100	Corn Rhizosphere	NSKGDLRVKLLGSVLLFIGVGGAAFATAVPEINPASAGSAIALVSGALLVMRGRRKK*
Ga0157374_101558392	3300013296	Miscanthus Rhizosphere	VKILGGVLLLIGMGGAAFANAVPEINPASAGSALALISGAVLVMRGRRKK*
Ga0157374_111716271	3300013296	Miscanthus Rhizosphere	HKTKSSKGDPRMKLVGSVLLLIGMGSAAFAAPVPEISPASAGSAIALISGAVLVMRGRRKK*
Ga0163162_110694722	3300013306	Switchgrass Rhizosphere	VGYMLLLMGMGSAAFATAVPEIDPASAGSALALVSGALLVMRGRRKK*
Ga0157375_118221922	3300013308	Miscanthus Rhizosphere	MKLLGSILLLIGVGSVAFAQPAPTPEISPASAGSALALLSGVLLVMGGRRRK*
Ga0163163_107241221	3300014325	Switchgrass Rhizosphere	SVLLFIGVGSAAFATAVPEINPASAGSAIALISGAVLVMRGRRKK*
Ga0163163_108662811	3300014325	Switchgrass Rhizosphere	MLLLMGMGSAAFGTAVAAPEISLASASSALALVSGVLLVMRGR
Ga0182024_106593862	3300014501	Permafrost	MKLLGCVLLFIGVGSVAFASVPEISPASAGSAIALISGAVLVMRGRRKK*
Ga0157376_102766482	3300014969	Miscanthus Rhizosphere	MGSLLLLIGLGSVAFAQVAPAPEISPASAGSALALLSGAVLVMRGRRKK*
Ga0157376_102766483	3300014969	Miscanthus Rhizosphere	VKFAGFVLLMIGAGSAAFAVATVPEISPASAGSALALVSGALLVMRGRRQK*
Ga0187779_104389482	3300017959	Tropical Peatland	VKIVGCVLLLIGMGSAAFAVSAAPEISPASAGSAIALISGAVLVMRGSRNK
Ga0187779_107346132	3300017959	Tropical Peatland	MMKLLGSILLLMGVTSAAFATSVPEISPASAGSAIALIAGAVLVIRGRRNSRY
Ga0210403_113229682	3300020580	Soil	VKLIGSVLLLIGMGGAAFAQVAPVPEISPVPAGSAVALIAGAVLVMRGRRKK
Ga0207642_103507031	3300025899	Miscanthus Rhizosphere	MLLLMGMGSAAFATAVPEISPASASSALALVSGALLVMRGRKK
Ga0207699_107339931	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLASMLLLIGMASFAMAQVQTPEVNPASAVGALALISGGLLV
Ga0207699_107339932	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLGFILLSIGAGSVAFGISVVPEINPAAAGSAIALISGTVLVMRGRRKN
Ga0207699_111084662	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	YYILTKDAFRRRLNMKLLGSILLLIGTGSMAFASVPEISPASAGSAIALISGAVLVMRGRRTK
Ga0207645_103662222	3300025907	Miscanthus Rhizosphere	MLLLMGMGSAAFATAVPEINPASAGSALALVSGALLVMRGRRKK
Ga0207654_108468792	3300025911	Corn Rhizosphere	MLLLMGMGSAAFATAVPEINPASASSAVALVSGALLVMRGRRKK
Ga0207695_112493651	3300025913	Corn Rhizosphere	LKLLGYMLLLMGMGSAAFATAVPEINPASASSALALVSGALL
Ga0207646_103664152	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VKLLGMMLLLIGVGSVASAIPAAPEISPASAGSALALISGAVLVIRGRREK
Ga0207687_106847602	3300025927	Miscanthus Rhizosphere	MKVLGSVLLLIGMASMTFATVAPEVNPASAGSAIALISGAVLVMRGRRKN
Ga0207687_106847603	3300025927	Miscanthus Rhizosphere	LIGLGSAVYGGPATAPEVNPASAGSALALISGVVLVLRGRRRKG
Ga0207687_116503922	3300025927	Miscanthus Rhizosphere	VKLVGSLLLLMGMGSAVFGAAVAAPEISPASAGSALAFVSGALMVMRGRRKK
Ga0207706_100703313	3300025933	Corn Rhizosphere	MGMGSAAFGTAVAAPEISPASASSALALVSGVLLVMRGRRK
Ga0207709_100379082	3300025935	Miscanthus Rhizosphere	LKLVGYMLLLMGMGSAAFATAVPEINPASAGSALALVSGALLVMRGRRKK
Ga0207709_102681061	3300025935	Miscanthus Rhizosphere	LRLLGYMLLLMGMGSAAFGTAVAAPEISPASASSALALVSGVLL
Ga0207709_107069832	3300025935	Miscanthus Rhizosphere	MKLLGSILLLIGVGSVAFAQPAPTPEISPASAGSALALLSGALLVMGGRRRK
Ga0207709_110652041	3300025935	Miscanthus Rhizosphere	SLAVAGALIAAPEISPASGAAALAMVSGALLVVRGRRK
Ga0207670_108347481	3300025936	Switchgrass Rhizosphere	VKLLGSVLLFIGVGSMAFGVTAVPEINPASVGSALALISGALLVMGGRRKK
Ga0207704_102996972	3300025938	Miscanthus Rhizosphere	LRLLGYMLLLMGMGSAAFATAVPEIDPASAGSALALVSGALLVMRGRRKK
Ga0207661_100430943	3300025944	Corn Rhizosphere	VKLLGGVLLLIGMGSAAFASPVPEINPASAGSALALISGAVLVMRGRRKK
Ga0207712_109187161	3300025961	Switchgrass Rhizosphere	MAFGLTAVPEISPASTGSALALISGALLVMGGRRKK
Ga0207677_108527133	3300026023	Miscanthus Rhizosphere	AVAGALIAAPEISPASGAAALAMVSGALLVVRGRRK
Ga0207677_111768301	3300026023	Miscanthus Rhizosphere	VTLKLVGYMLLLMGMGSAAFATAVPEINPASAGSALALVSGALLVMRGRRKK
Ga0207702_120252421	3300026078	Corn Rhizosphere	LKLLGYMLLLMGMGSAAFATAVPEINPASASSAVALVSG
Ga0209580_106386101	3300027842	Surface Soil	VKLIGSMLLLVGMGSFAFAITAVPEVSAASAGSAVALISGALLVMRGRRKK
Ga0209517_100054073	3300027854	Peatlands Soil	MKLSGSVLLLIGMGSFVFGINVPEISPASAGSAIALISGAVLVMRGRRKE
Ga0209517_1001464710	3300027854	Peatlands Soil	VKLIGAMVLLMGMGTFASALNVSAPEISPASAGSAIALIAGAVLVMRGRRKKQNLSKVKETL
Ga0209517_1001464711	3300027854	Peatlands Soil	MKIIGAMLLLVGMGGAAFATGVPEISPASAGSAIALISGAVLVMRGRRKK
Ga0209517_1001464712	3300027854	Peatlands Soil	MSQWLLIGMGSAAFATPAPEINPASAGSAIALISGVVLVMRGRRSRRY
Ga0209517_100146478	3300027854	Peatlands Soil	MKIIGAMLLLVGMGSAAFASVPEISPASAGSAIALISGAVLVMRGRRSK
Ga0209517_100146479	3300027854	Peatlands Soil	LIGVVSAAFATPSVPEISPASAGSAIALISGAVLVMRGRRSK
Ga0209415_1002381310	3300027905	Peatlands Soil	VKLIGAMVLLMGMGTFASALNVSAPEISPASAGSAIALIAGAVLGMRG
Ga0307504_100964592	3300028792	Soil	VRLSGIILLLIGMSCVAFAQVQTPEISPASAGTAVALIAGAVLVMRGRRKK
Ga0265338_105698602	3300028800	Rhizosphere	VKLLGSVLLLIGVGSAAFASGVPEVSPASAGSAIALISGAVLVMRGRRKK
Ga0265338_105698603	3300028800	Rhizosphere	VRLIGAMVLLMGMGTFASALNVSAPEISPASAGSAIALISGAVLVMRGRRKK
Ga0311331_106904121	3300029954	Bog	VGASVFAMADFTTPEINPASAGSAIALVSGALLVYRGRRK
Ga0311350_104421322	3300030002	Fen	VKKLIGMFLLLIGASTLALADVVAAPEISPASAGSALALVSGALLIYRGRR
Ga0170834_1004197092	3300031057	Forest Soil	VKLLGSILLLIAMGSVAWAQVAPAPEVNPSSAGTALALISGAVLVMRGRRKK
Ga0170834_1023466402	3300031057	Forest Soil	LLFIGVGSAAFAVPAVPEISPVSAGSAIALISGAVLVMRGRRKK
Ga0170824_1168602321	3300031231	Forest Soil	SSTTFSRVFKSKGDLRVRLLGTVLLFIGVGSAAFAVPAVPEISPVSAGSAIALISGAVLVMRGRRKK
Ga0170824_1262633822	3300031231	Forest Soil	VKLLGSILLLIAMGSVAFAQVAPAPEISPSSAGTALALISGAVLVMRGRRKK
Ga0302323_1017170741	3300031232	Fen	VKKLNGMFLLLIGASTLALADVVAAPEISPASAGSALALVSGALLIYRGRR
Ga0170818_1028484201	3300031474	Forest Soil	MLLIAMGSVAFAQVAPAPEISPSSAGTALALISGAVLVMRGRRKK
Ga0265313_100031663	3300031595	Rhizosphere	MRLIGSILLLIGMATFAVAQSVAPEISPASAGSAIALISGAVLVMRGRRKK
Ga0265313_100031664	3300031595	Rhizosphere	MKLLGTILLLIGMGSMVFATPSVPEISPASAGSAIALISGAVLVMRGRRKK
Ga0302321_1024986492	3300031726	Fen	MRILGVVLLLVGLGSAAFAGPATAPEINPASAGSALALVSGLVLVIRGRRKK
Ga0311301_108423203	3300032160	Peatlands Soil	MSMKFVGITLLLMGLSSAAMALQATVPEVSPVSAGSALALIAGAVLVMRGRRKK
Ga0311301_108620281	3300032160	Peatlands Soil	VKLIGSILLLIGVGTAVFATPSVPEINPASAGSAIALISGAVLLMRGRRKK
Ga0311301_111379722	3300032160	Peatlands Soil	MKVLGQVLLFIGVGSVAFGGAPPAPEISSASAGSAIALISGAVLVMRGRRKK
Ga0348332_107729792	3300032515	Plant Litter	PVVRKSEGDFKMKLLGCVLLFIGVGSVAFAGVPEISPASAGSAIALISGAVLVMRGRRKK
Ga0310811_110702402	3300033475	Soil	MKLFGSMLLVMGMGCVAFAQAVPAPEVSPASAGSALALIAGAVLVMRGRRKK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F046040

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences