NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F047326

Metagenome / Metatranscriptome Family F047326

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F047326
Family Type Metagenome / Metatranscriptome
Number of Sequences 150
Average Sequence Length 45 residues
Representative Sequence GLDRSVVEAGLIDQLDLCVADFIVGARPVFGCSGRGSVGTANG
Number of Associated Samples 140
Number of Associated Scaffolds 150

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 93.33 %
% of genes from short scaffolds (< 2000 bps) 93.33 %
Associated GOLD sequencing projects 134
AlphaFold2 3D model prediction Yes
3D model pTM-score0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (69.333 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(14.667 % of family members)
Environment Ontology (ENVO) Unclassified
(30.667 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(42.667 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 32.39%    β-sheet: 0.00%    Coil/Unstructured: 67.61%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.27
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 150 Family Scaffolds
PF12697Abhydrolase_6 21.33
PF12146Hydrolase_4 14.00
PF05198IF3_N 5.33
PF136224HBT_3 2.67
PF12695Abhydrolase_5 2.00
PF12680SnoaL_2 1.33
PF13417GST_N_3 0.67
PF13484Fer4_16 0.67
PF00296Bac_luciferase 0.67
PF01872RibD_C 0.67
PF13646HEAT_2 0.67
PF00561Abhydrolase_1 0.67

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 150 Family Scaffolds
COG0290Translation initiation factor IF-3Translation, ribosomal structure and biogenesis [J] 5.33
COG0262Dihydrofolate reductaseCoenzyme transport and metabolism [H] 0.67
COG1985Pyrimidine reductase, riboflavin biosynthesisCoenzyme transport and metabolism [H] 0.67
COG2141Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)Coenzyme transport and metabolism [H] 0.67


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A69.33 %
All OrganismsrootAll Organisms30.67 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001081|JGI12662J13196_1006141Not Available962Open in IMG/M
3300001661|JGI12053J15887_10018565All Organisms → cellular organisms → Bacteria3876Open in IMG/M
3300001661|JGI12053J15887_10240300Not Available904Open in IMG/M
3300001686|C688J18823_10031942All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii3605Open in IMG/M
3300002245|JGIcombinedJ26739_100221219All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1785Open in IMG/M
3300004092|Ga0062389_104886482Not Available505Open in IMG/M
3300004153|Ga0063455_100859014Not Available637Open in IMG/M
3300005328|Ga0070676_11065092Not Available610Open in IMG/M
3300005353|Ga0070669_101040661Not Available703Open in IMG/M
3300005454|Ga0066687_10985504Not Available503Open in IMG/M
3300005544|Ga0070686_101754726Not Available527Open in IMG/M
3300005545|Ga0070695_100323304All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1147Open in IMG/M
3300005560|Ga0066670_10993800Not Available512Open in IMG/M
3300005563|Ga0068855_100526719All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1281Open in IMG/M
3300005568|Ga0066703_10790346Not Available543Open in IMG/M
3300005575|Ga0066702_10468126Not Available770Open in IMG/M
3300005844|Ga0068862_100697076All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria983Open in IMG/M
3300005983|Ga0081540_1020479All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii3975Open in IMG/M
3300005983|Ga0081540_1198936Not Available731Open in IMG/M
3300006163|Ga0070715_10729816Not Available594Open in IMG/M
3300006163|Ga0070715_11063683Not Available507Open in IMG/M
3300006176|Ga0070765_101977039All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria546Open in IMG/M
3300006177|Ga0075362_10131552All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1191Open in IMG/M
3300006794|Ga0066658_10487553Not Available670Open in IMG/M
3300006797|Ga0066659_10180538All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1528Open in IMG/M
3300006903|Ga0075426_10904485Not Available666Open in IMG/M
3300007258|Ga0099793_10318073Not Available758Open in IMG/M
3300007265|Ga0099794_10403977Not Available714Open in IMG/M
3300009100|Ga0075418_10512247Not Available1289Open in IMG/M
3300009101|Ga0105247_11453501Not Available557Open in IMG/M
3300009101|Ga0105247_11845650Not Available504Open in IMG/M
3300009174|Ga0105241_10870124Not Available835Open in IMG/M
3300009176|Ga0105242_10272049All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii1535Open in IMG/M
3300009500|Ga0116229_10199909Not Available1721Open in IMG/M
3300010038|Ga0126315_10952260Not Available573Open in IMG/M
3300010044|Ga0126310_10821225Not Available717Open in IMG/M
3300010333|Ga0134080_10464700Not Available596Open in IMG/M
3300010373|Ga0134128_11438486Not Available759Open in IMG/M
3300010396|Ga0134126_12787973Not Available530Open in IMG/M
3300010397|Ga0134124_10752254All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria970Open in IMG/M
3300010403|Ga0134123_13271703Not Available522Open in IMG/M
3300010865|Ga0126346_1278764Not Available638Open in IMG/M
3300011119|Ga0105246_10745828Not Available863Open in IMG/M
3300011119|Ga0105246_12539433All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria505Open in IMG/M
3300011270|Ga0137391_10275750All Organisms → cellular organisms → Bacteria1454Open in IMG/M
3300012004|Ga0120134_1052785Not Available708Open in IMG/M
3300012199|Ga0137383_10943935Not Available630Open in IMG/M
3300012208|Ga0137376_10479004All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1080Open in IMG/M
3300012209|Ga0137379_10925010Not Available777Open in IMG/M
3300012212|Ga0150985_119091647All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1658Open in IMG/M
3300012212|Ga0150985_121535076All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium909Open in IMG/M
3300012896|Ga0157303_10313759Not Available506Open in IMG/M
3300012925|Ga0137419_10647648Not Available853Open in IMG/M
3300012943|Ga0164241_10641133Not Available769Open in IMG/M
3300012944|Ga0137410_11845667All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria534Open in IMG/M
3300012961|Ga0164302_11434553Not Available565Open in IMG/M
3300013296|Ga0157374_10998720Not Available856Open in IMG/M
3300013307|Ga0157372_11524518Not Available770Open in IMG/M
3300014166|Ga0134079_10539769Not Available570Open in IMG/M
3300014326|Ga0157380_13154661Not Available526Open in IMG/M
3300014745|Ga0157377_10455129Not Available884Open in IMG/M
3300015053|Ga0137405_1048712All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia → Afipia sp. Root123D2550Open in IMG/M
3300015194|Ga0167666_1112190Not Available551Open in IMG/M
3300015242|Ga0137412_10753019Not Available719Open in IMG/M
3300015245|Ga0137409_10105251All Organisms → cellular organisms → Bacteria2614Open in IMG/M
3300015374|Ga0132255_105038072Not Available559Open in IMG/M
3300017792|Ga0163161_11783958Not Available547Open in IMG/M
3300018027|Ga0184605_10509441Not Available523Open in IMG/M
3300018042|Ga0187871_10393792Not Available765Open in IMG/M
3300018075|Ga0184632_10378372Not Available599Open in IMG/M
3300018076|Ga0184609_10540554Not Available527Open in IMG/M
3300018422|Ga0190265_11940321Not Available695Open in IMG/M
3300018429|Ga0190272_11558145Not Available675Open in IMG/M
3300019361|Ga0173482_10204910Not Available810Open in IMG/M
3300019362|Ga0173479_10653788Not Available559Open in IMG/M
3300019377|Ga0190264_10899734Not Available691Open in IMG/M
3300019887|Ga0193729_1037833All Organisms → cellular organisms → Bacteria → Proteobacteria2007Open in IMG/M
3300019889|Ga0193743_1024659All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium3009Open in IMG/M
3300020580|Ga0210403_10449032All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1050Open in IMG/M
3300020582|Ga0210395_10144105All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1776Open in IMG/M
3300021088|Ga0210404_10471155Not Available707Open in IMG/M
3300021420|Ga0210394_11027114Not Available713Open in IMG/M
3300021559|Ga0210409_10837471Not Available793Open in IMG/M
3300022516|Ga0224542_1024650All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria769Open in IMG/M
3300022756|Ga0222622_10419104All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria945Open in IMG/M
3300022756|Ga0222622_10608076Not Available789Open in IMG/M
3300022903|Ga0247774_1115089Not Available633Open in IMG/M
3300023258|Ga0224535_1095375All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria646Open in IMG/M
3300025664|Ga0208849_1038593All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1491Open in IMG/M
3300025899|Ga0207642_10300695Not Available930Open in IMG/M
3300025913|Ga0207695_11098825Not Available675Open in IMG/M
3300025916|Ga0207663_10669435Not Available820Open in IMG/M
3300025920|Ga0207649_11577371Not Available520Open in IMG/M
3300025923|Ga0207681_11112696Not Available663Open in IMG/M
3300025931|Ga0207644_10810770Not Available783Open in IMG/M
3300025931|Ga0207644_10860587Not Available759Open in IMG/M
3300025936|Ga0207670_11333755Not Available609Open in IMG/M
3300025942|Ga0207689_10641463Not Available894Open in IMG/M
3300025949|Ga0207667_10413479All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei1373Open in IMG/M
3300025961|Ga0207712_10988487Not Available746Open in IMG/M
3300026121|Ga0207683_10435962All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1207Open in IMG/M
3300026467|Ga0257154_1072744Not Available544Open in IMG/M
3300026508|Ga0257161_1076301Not Available689Open in IMG/M
3300026557|Ga0179587_10389606Not Available907Open in IMG/M
3300027480|Ga0208993_1065151Not Available661Open in IMG/M
3300027512|Ga0209179_1056364Not Available849Open in IMG/M
3300027524|Ga0208998_1036308Not Available793Open in IMG/M
3300027546|Ga0208984_1146953Not Available505Open in IMG/M
3300027574|Ga0208982_1068850Not Available709Open in IMG/M
3300027587|Ga0209220_1098684Not Available767Open in IMG/M
3300027643|Ga0209076_1149937Not Available652Open in IMG/M
3300027681|Ga0208991_1097661All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria881Open in IMG/M
3300027894|Ga0209068_10441517Not Available746Open in IMG/M
3300028047|Ga0209526_10048799All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2981Open in IMG/M
3300028380|Ga0268265_10538490All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1106Open in IMG/M
3300028380|Ga0268265_11225765Not Available748Open in IMG/M
3300028592|Ga0247822_11034784Not Available679Open in IMG/M
3300028673|Ga0257175_1066963Not Available676Open in IMG/M
3300028708|Ga0307295_10177388Not Available599Open in IMG/M
3300028709|Ga0307279_10055295Not Available658Open in IMG/M
3300028712|Ga0307285_10013641All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1789Open in IMG/M
3300028719|Ga0307301_10254334Not Available574Open in IMG/M
3300028778|Ga0307288_10288015Not Available651Open in IMG/M
3300028790|Ga0307283_10152020Not Available639Open in IMG/M
3300028875|Ga0307289_10395579Not Available568Open in IMG/M
3300028881|Ga0307277_10107064All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1190Open in IMG/M
3300028885|Ga0307304_10333030Not Available676Open in IMG/M
3300029200|Ga0120082_1002551All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2288Open in IMG/M
3300029923|Ga0311347_10434530Not Available799Open in IMG/M
3300029943|Ga0311340_10114258All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae2930Open in IMG/M
3300029944|Ga0311352_10593020Not Available886Open in IMG/M
3300029951|Ga0311371_12178309All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria579Open in IMG/M
3300029954|Ga0311331_10641412All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria995Open in IMG/M
3300029997|Ga0302302_1075965All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1415Open in IMG/M
3300030002|Ga0311350_11610599Not Available575Open in IMG/M
3300030503|Ga0311370_12180096Not Available545Open in IMG/M
3300030966|Ga0075383_11296527All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. KY75654Open in IMG/M
3300031027|Ga0302308_10416486Not Available804Open in IMG/M
3300031170|Ga0307498_10129813Not Available813Open in IMG/M
3300031708|Ga0310686_104648031All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2798Open in IMG/M
3300031708|Ga0310686_114859117All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria957Open in IMG/M
3300031718|Ga0307474_10732594All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria781Open in IMG/M
3300031824|Ga0307413_11298749Not Available636Open in IMG/M
3300031852|Ga0307410_10132849All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1831Open in IMG/M
3300031911|Ga0307412_11850114Not Available556Open in IMG/M
3300031995|Ga0307409_101515112Not Available698Open in IMG/M
3300032074|Ga0308173_11080973Not Available747Open in IMG/M
3300032126|Ga0307415_100252279All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1434Open in IMG/M
3300032205|Ga0307472_101064263Not Available763Open in IMG/M
3300034156|Ga0370502_0266854Not Available548Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil14.67%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil9.33%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil7.33%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil6.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil4.00%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa4.00%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere3.33%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil2.67%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.67%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere2.67%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment2.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere2.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere2.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere2.00%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.33%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil1.33%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.33%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.33%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil1.33%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.33%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere1.33%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil1.33%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen1.33%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere1.33%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.33%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere1.33%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.33%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.33%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.33%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.33%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland0.67%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil0.67%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.67%
BiofilmEnvironmental → Aquatic → Unclassified → Unclassified → Unclassified → Biofilm0.67%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil0.67%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil0.67%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost0.67%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil0.67%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil0.67%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog0.67%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter0.67%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.67%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.67%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere0.67%
Populus EndosphereHost-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere0.67%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.67%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.67%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.67%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.67%
Host-AssociatedHost-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated0.67%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil0.67%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001081Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3EnvironmentalOpen in IMG/M
3300001661Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)EnvironmentalOpen in IMG/M
3300001686Grasslands soil microbial communities from Hopland, California, USAEnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004153Grasslands soil microbial communities from Hopland, California, USA (version 2)EnvironmentalOpen in IMG/M
3300005328Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaGHost-AssociatedOpen in IMG/M
3300005353Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaGHost-AssociatedOpen in IMG/M
3300005454Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136EnvironmentalOpen in IMG/M
3300005544Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaGEnvironmentalOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005560Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119EnvironmentalOpen in IMG/M
3300005563Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2Host-AssociatedOpen in IMG/M
3300005568Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152EnvironmentalOpen in IMG/M
3300005575Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151EnvironmentalOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300005983Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1Host-AssociatedOpen in IMG/M
3300006163Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaGEnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006177Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2Host-AssociatedOpen in IMG/M
3300006794Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107EnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009101Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaGHost-AssociatedOpen in IMG/M
3300009174Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaGHost-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009500Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MGHost-AssociatedOpen in IMG/M
3300010038Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106EnvironmentalOpen in IMG/M
3300010044Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60EnvironmentalOpen in IMG/M
3300010333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300010865Boreal forest soil eukaryotic communities from Alaska, USA - C3-3 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300011119Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaGHost-AssociatedOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300012004Permafrost microbial communities from Nunavut, Canada - A30_5cm_6MEnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012896Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2EnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012943Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300013307Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaGHost-AssociatedOpen in IMG/M
3300014166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015EnvironmentalOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300014745Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaGHost-AssociatedOpen in IMG/M
3300015053Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015194Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb1c, glacier snout)EnvironmentalOpen in IMG/M
3300015242Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015245Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300018027Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coexEnvironmentalOpen in IMG/M
3300018042Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10EnvironmentalOpen in IMG/M
3300018075Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1EnvironmentalOpen in IMG/M
3300018076Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coexEnvironmentalOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300018429Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 TEnvironmentalOpen in IMG/M
3300019361Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)EnvironmentalOpen in IMG/M
3300019362Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)EnvironmentalOpen in IMG/M
3300019377Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 TEnvironmentalOpen in IMG/M
3300019887Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2EnvironmentalOpen in IMG/M
3300019889Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c2EnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300021088Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-MEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300022516Peat soil microbial communities from Stordalen Mire, Sweden - 717 E3 30-34EnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300022903Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L001-104B-6EnvironmentalOpen in IMG/M
3300023258Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 30-34EnvironmentalOpen in IMG/M
3300025664Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 deep-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300025899Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025913Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025920Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025936Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025942Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025949Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026121Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026467Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-AEnvironmentalOpen in IMG/M
3300026508Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-AEnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300027480Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027512Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes)EnvironmentalOpen in IMG/M
3300027524Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027546Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027574Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027587Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027643Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)EnvironmentalOpen in IMG/M
3300027681Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027894Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300028047Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028592Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30EnvironmentalOpen in IMG/M
3300028673Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-BEnvironmentalOpen in IMG/M
3300028708Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152EnvironmentalOpen in IMG/M
3300028709Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_118EnvironmentalOpen in IMG/M
3300028712Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139EnvironmentalOpen in IMG/M
3300028719Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182EnvironmentalOpen in IMG/M
3300028778Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142EnvironmentalOpen in IMG/M
3300028790Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_122EnvironmentalOpen in IMG/M
3300028875Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143EnvironmentalOpen in IMG/M
3300028881Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116EnvironmentalOpen in IMG/M
3300028885Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185EnvironmentalOpen in IMG/M
3300029200Biofilm microbial communities from University of Hong Kong - BiofilmEnvironmentalOpen in IMG/M
3300029923II_Fen_E1 coassemblyEnvironmentalOpen in IMG/M
3300029943I_Palsa_N3 coassemblyEnvironmentalOpen in IMG/M
3300029944II_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300029951III_Palsa_N1 coassemblyEnvironmentalOpen in IMG/M
3300029954I_Bog_N3 coassemblyEnvironmentalOpen in IMG/M
3300029997Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_3EnvironmentalOpen in IMG/M
3300030002II_Fen_N1 coassemblyEnvironmentalOpen in IMG/M
3300030503III_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030966Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB4 EcM (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031027Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_3EnvironmentalOpen in IMG/M
3300031170Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_SEnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031718Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05EnvironmentalOpen in IMG/M
3300031824Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2Host-AssociatedOpen in IMG/M
3300031852Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3Host-AssociatedOpen in IMG/M
3300031911Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1Host-AssociatedOpen in IMG/M
3300031995Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2Host-AssociatedOpen in IMG/M
3300032074Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1EnvironmentalOpen in IMG/M
3300032126Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2Host-AssociatedOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300034156Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_01D_18EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12662J13196_100614113300001081Forest SoilMPAFEGHLYGGRCFDRAVVRAVLINQLNLCIADFIVGARPVFGGSGRGSVGTANG*
JGI12053J15887_1001856513300001661Forest SoilHRHLDGGDRFDIAVVQACLIDQLDFVVADFIIGARPVFGGSGRGSVGTANG*
JGI12053J15887_1024030023300001661Forest SoilMIDTVLIDQLDFVIADFIVGARPVFAGGGRGSVGTANG*
C688J18823_1003194213300001686SoilHGLDRSMVEAGLIDQLDLCVADFIIGARPVFGCSGRGSVGTANG*
JGIcombinedJ26739_10022121913300002245Forest SoilAVLIDQLNLCVADFIVGARPVFGGSGRGSVGTANG*
Ga0062389_10488648213300004092Bog Forest SoilDGGDRFDIAVVQACLVDQLDLVVADFIVGARPVFGSSGRGSIGTANG*
Ga0063455_10085901423300004153SoilLDKIHARIEGHLDGKGCFDGAVVQAGLIDQLDLGVADFIVGARPVFDGGGRGSVGTANG*
Ga0070676_1106509213300005328Miscanthus RhizosphereRSMVEAGLIDQLDLCVADFIIGARPVFGCSGRGSVGTANG*
Ga0070669_10104066123300005353Switchgrass RhizosphereGLDRSVVEAGLIDQLDLCVADFIVGARPVFGCSGRGSVGTANG*
Ga0066687_1098550423300005454SoilHGLDGALVGAVGVDQLDLCIADIIIDARPVVGDGGRGSIGTANG*
Ga0070686_10175472613300005544Switchgrass RhizosphereGLDRSVVEAGLIDQLDLCVADFIVGARPVFGCGGRGSVGTANG*
Ga0070695_10032330423300005545Corn, Switchgrass And Miscanthus RhizosphereIHARLEGHLDGDHGLDGSVVEAGLIDQLDLRVSDIIIGARPVFGCSGRGSVGTANG*
Ga0066670_1099380013300005560SoilSVVRTILIDQLDLRVADIIIGARPVFGGSGRGSVGTANG*
Ga0068855_10052671933300005563Corn RhizosphereDGAVVRAVLIDQLNGGVADFVIGARPVFGGSGRGSVGTANG*
Ga0066703_1079034613300005568SoilKVHAGFEGHLDGQHSFDRAVVEAGLIDQLDLRVADFIIGARPVFGCGGRGSVGTANG*
Ga0066702_1046812623300005575SoilGHLDGGDCLDRAVVRAVLVDQLNLCVADFIIGARPVFGGSGRGSVGTANG*
Ga0068862_10069707613300005844Switchgrass RhizosphereSVVEAGLIDQLDLCVADFIVGARPVFGCSGRGSVGTANG*
Ga0081540_102047963300005983Tabebuia Heterophylla RhizosphereCSVVGAVLIDQLDLRVADIIIGARPVFGCSGRGSVGTANG*
Ga0081540_119893623300005983Tabebuia Heterophylla RhizosphereLDGDHGLDRSVVGAVLIDQLDLRVADIVIGARPVFGCSGRGSVGTANG*
Ga0070715_1072981613300006163Corn, Switchgrass And Miscanthus RhizosphereGLDRSMVGAVLIDQLDLRVADFIIGARPVFGCGGRGSVGTANG*
Ga0070715_1106368313300006163Corn, Switchgrass And Miscanthus RhizosphereVRAVLIDQLNLCVADFIIGARPVFGGSGRGSIGTANG*
Ga0070765_10197703913300006176SoilGRCFDRAVIQAVLVDQLNLCVADFIVGTRPVFGGSGRGSVGTANG*
Ga0075362_1013155223300006177Populus EndosphereAVLIDQLDLRVADFIIGARPVFGCGGRGSVGTANG*
Ga0066658_1048755323300006794SoilDGGDCLDRAVVRAVLVDQLNRGVADFVIGARPVFCGSGRGSVGTANG*
Ga0066659_1018053813300006797SoilHLYRRRRLDGAVIGTALIDQLDLCVADFVIGARPVFGGSGRGSVGTANG*
Ga0075426_1090448513300006903Populus RhizosphereGHLDGDHGLDGSVVEAGLINQLDLRVSDFIIGARPVFGCSGRGSVGTANG*
Ga0099793_1031807323300007258Vadose Zone SoilAVVQACLIDQLDFVIADFIVGARPVFCGSGRGSVGTANG*
Ga0099794_1040397713300007265Vadose Zone SoilDIAVVQACLIDQLDFVVADFIIGAGPVFGGSGRGSVGTANG*
Ga0075418_1051224713300009100Populus RhizosphereGNHGLDRSMVEAGLIDQLDLCVADFIIGARPVFGCSGRGSVGTANG*
Ga0105247_1145350123300009101Switchgrass RhizosphereVVETGLIDQLDLCIPDFIIGARPVFDCGGRGSVGTANG*
Ga0105247_1184565023300009101Switchgrass RhizosphereLEGHLDGNNGLDRSVVEAGLIDQLDLCVADFIVGARPVFGCGGRGSVGTANG*
Ga0105241_1087012423300009174Corn RhizosphereVVEAGLIDQLDLCVADFIVGARPVFGCSGRGSVGTANG*
Ga0105242_1027204933300009176Miscanthus RhizosphereFEGHLDGQHGFDGAVVEARLIDQLDLCVADFIIGARPVFGCGGRGSVGTANG*
Ga0116229_1019990933300009500Host-AssociatedMVQACLIDQLDFVIADFIVGARPVFGDSGRGSVGTANG*
Ga0126315_1095226023300010038Serpentine SoilNHGLDRSVVEAGLIDQLDLCVADFIVGARPVFGCSGRGSVGTANG*
Ga0126310_1082122523300010044Serpentine SoilLDRSVVEAGLIDQLDLRVADFIIGARPVFGCSGRGSVGTANG*
Ga0134080_1046470013300010333Grasslands SoilRFEGHLDGDHGFDGSVVRTILIDQLDLRVADIIIGARPVFGCSGRGSVGTANG*
Ga0134128_1143848613300010373Terrestrial SoilHLDGDHGLEGAVAYAGLIDKLDLGVADIIIGARPVFGCGGRGPVGTANG*
Ga0134126_1278797323300010396Terrestrial SoilDGHLDGKHRLDRSVVQTGLIDQLDLRVADFIIGARPVFYCGGRGSVGTANG*
Ga0134124_1075225413300010397Terrestrial SoilHLDSNRGLDRPVVEAGLIDQLDLCVSDFIIGARPVFGCSGRGSVGTANG*
Ga0134123_1327170323300010403Terrestrial SoilMVETGLIDQLDFVIADFIVGARPVFAGGGRGSVGTANG*
Ga0126346_127876423300010865Boreal Forest SoilMIDARLIDQLDFVIADFIVGARPVFAGSGRGSVGTANG*
Ga0105246_1074582813300011119Miscanthus RhizosphereARFEGHLDGNHGLDRSMVEAGLIDQLDLCVADFIIGARPVFGCGGRGSVGTANG*
Ga0105246_1253943313300011119Miscanthus RhizosphereGLDRPVVEAGLIDQLDLCVADFIVGARPVFGCSGRGSVGTANG*
Ga0137391_1027575033300011270Vadose Zone SoilDGGDRFDIAVVQACLINQLDFVVADFIVGARPVFGGSGRGSVGTANG*
Ga0120134_105278513300012004PermafrostGLDRAVVGAVLIDQLDLGVADIIVGARPVFGGGGRGSVGTANG*
Ga0137383_1094393513300012199Vadose Zone SoilDIAVVQACLIDQLDFVVADFIVGARPVFGGSGRGSVGTANG*
Ga0137376_1047900413300012208Vadose Zone SoilIHARLERHLDGNHGLDRSMVEAGLIDQLDLCVADFIIGARPVFGCSGRGSVGTANG*
Ga0137379_1092501013300012209Vadose Zone SoilGHHGFDGAVVEARLIDQLDLRVADFIIGARPVFGCSGRGSVGTANG*
Ga0150985_11909164733300012212Avena Fatua RhizosphereLDRAVVRAALIDQLNRGVSDFIVGARPVFGGSGRGSVGTANG*
Ga0150985_12153507623300012212Avena Fatua RhizosphereMVDAGLIDQLDFVIADFIVGARPVFAGGGRGSVGTANG*
Ga0157303_1031375923300012896SoilDGNHGFNRSVVEAGLIDQLDLCVADFIVGARPVFGCSGRGSVGTANG*
Ga0137419_1064764823300012925Vadose Zone SoilGDRFDIAVVQACLIDQLDFVIADFIVGARPVFCGSGRGSVGTANG*
Ga0164241_1064113323300012943SoilEGHLDGDHGLNRSVVGAVLIDQLDLRVADIVIGARPVFGCSGRGSVGTANG*
Ga0137410_1184566713300012944Vadose Zone SoilVLIDQLNLCIADFIVCARPVFGGRGRGSVGTANG*
Ga0164302_1143455323300012961SoilRHRFDGAMVGTILVDQLDLCVADVVIDARPVFGDCGRGSIGTANG*
Ga0157374_1099872013300013296Miscanthus RhizosphereIHARFEGHLDGNHGLDRSMVEAGLIDQLDLCVADFIIGARPVFGCGGRGSVGTANG*
Ga0157372_1152451823300013307Corn RhizosphereDGSVVEAGLIDQLDLRVSDIIIGARPVFGCSGRGSVGTANG*
Ga0134079_1053976913300014166Grasslands SoilLEGHLDGDHGFDCSVVEAGLIDQLDLRVADFIIGARPVFGCSGRGSVGTANG*
Ga0157380_1315466123300014326Switchgrass RhizosphereGLIDQLDLRVADFIVGARPVFGCGGRGSVGTANG*
Ga0157377_1045512923300014745Miscanthus RhizosphereVHGHLDGGHGLDGTMVGAILVDQLDLCVADVVIDARPVFGDCGRGSIGTANG*
Ga0137405_104871213300015053Vadose Zone SoilGFHRHLDGGDRFDIAVVQACLINQLDFVVADFIVGARPVFGGSGRGSVGTANG*
Ga0167666_111219013300015194Glacier Forefield SoilNLDKIHARFKGHLDGQHGFDRAVVETGLIDQLDLRVADFIIGARPVFGCGGRGSVGTANG
Ga0137412_1075301913300015242Vadose Zone SoilALINQLDLRVADFIVVALPVFGCGGRGSVGTANG*
Ga0137409_1010525113300015245Vadose Zone SoilDEIHARFEGHLDGQHGFHGAVIEARLIDQLDLCVADFIIGARPVFGCSGRGSVGTANG*
Ga0132255_10503807213300015374Arabidopsis RhizosphereGLDGALVGTIDVDQLDLCVADFIIDARPVFGDCGRGSVGTANG*
Ga0163161_1178395823300017792Switchgrass RhizosphereDGNNGLDRSVVEAGLIDQLDLRVADFIVGARPVFGCGGRGSVGTANG
Ga0184605_1050944113300018027Groundwater SedimentIHARFEGHLDGNHGLDRSMVEAGLIDQLDLGVADFIIGARPVFGGSGRGSVGTANG
Ga0187871_1039379213300018042PeatlandACLVDQLDFVIADFIIGARPVFGGSGRGSVGTANG
Ga0184632_1037837223300018075Groundwater SedimentARFEGHLDGNHGLDRSMVEAGLIDQLDLCVADFIIGARPVFGCGGRGSVGTANG
Ga0184609_1054055423300018076Groundwater SedimentNLDKIHARFEGHLDGQHGFDSAVIEACLIDQLDLRVADIIIGARPVFGCSGRGSVGTANG
Ga0190265_1194032123300018422SoilGLDRSVVEAGLIDQLDLRVADFIIGARPVFGCSGRGSVGTANG
Ga0190272_1155814523300018429SoilDRAMVQAGLINQLDLCVADFIVGARPVFGGSGRGSVGTANG
Ga0173482_1020491013300019361SoilGNNGLDRSMVEAGLIDQLDLCVADFIIGARPVFGCSGRGSVGTANG
Ga0173479_1065378823300019362SoilGTMVGAILVDQLDLCVADVVIDARPVFGDCGRGSIGTANG
Ga0190264_1089973423300019377SoilMVEAGLIDQLDLRVADFIIGARPVFGCSGRGSVGTANG
Ga0193729_103783343300019887SoilMIDARLIDQLDFVIADFIVGARPVFAGSGRGSVGTANG
Ga0193743_102465953300019889SoilFEGHLDGGNGFDRTVVEAGLINQLDLRVADFIVGARPVFGGSGRGSVGTANG
Ga0210403_1044903213300020580SoilRAVIQAVLVDQLNLCVADFIVGARPVFGGSGRGSVGTANG
Ga0210395_1014410533300020582SoilAVLIDQLNLCVADFIVGARPVFGGSGRGSVGTANG
Ga0210404_1047115513300021088SoilRAVLIDQLNLCVADFIVGARPVFGGSGRGSVGTANG
Ga0210394_1102711413300021420SoilDRAVVGAVLIDQLDLRVADIIVGARPVFGGGGRGSVGTANG
Ga0210409_1083747123300021559SoilGHGLDRAVVRAVLIDQLNLCVADFIVGARPVFGGSGRGSVGTANG
Ga0224542_102465023300022516SoilAGLIDQLDGEIADFIIGARPVLCGGGRGSVGTANG
Ga0222622_1041910423300022756Groundwater SedimentHLDGDHGLDRSMVEAGLIDQLDLCVADFIIGARPVFGCSGRGSVGTANG
Ga0222622_1060807613300022756Groundwater SedimentLDEIHARFEGHLDGNHGLDRSMVEAGLIDQLDLGVADFIIGARPVFGCGGRGSVGTANG
Ga0247774_111508923300022903Plant LitterHARLERHFDGNDGLDRSVVEAGLIDQLDLCVADFIVGARPVFGCSGRGSVGTANG
Ga0224535_109537513300023258SoilVDAGLIDQLDGEIADFIIGARPVLCGGGRGSVGTANG
Ga0208849_103859323300025664Arctic Peat SoilLDGGDRFDIAVVEACLIDQLDFVVADFIVGARPVFGGSGRGSVGTANG
Ga0207642_1030069523300025899Miscanthus RhizosphereIHAGFDSHLDGNHGLDRSVAEAGLIDQLDLCVADFIVGARPVFGCSGRGSVGTANG
Ga0207695_1109882523300025913Corn RhizosphereAMVGAVLIDQLDLRVADIIVGARPVFGGGGRGSVGTANG
Ga0207663_1066943523300025916Corn, Switchgrass And Miscanthus RhizosphereARFEGHLDGYHGLDRSMVGAVLIDQLDLRVADFIIGARPVFGCGGRGSVGTANG
Ga0207649_1157737123300025920Corn RhizosphereGDHGLDRSVVEAVLIDQLDLRVADIVIGARPVFGCSGRGSVGTANG
Ga0207681_1111269623300025923Switchgrass RhizosphereRLEGHLDGDHGLDGSVVEAGLIDQLDLRVSDIIIGARPVFGCSGRGSVGTANG
Ga0207644_1081077023300025931Switchgrass RhizosphereLDRSVVEAGLIDQLDLCVSDFIVGARPVFGCSGRGSVGTANG
Ga0207644_1086058723300025931Switchgrass RhizosphereSMVEAGLIDQLDLCVADFIIGARPVFGCGGRGSVGTANG
Ga0207670_1133375513300025936Switchgrass RhizosphereGNNGLDRSVVEAGLIDQLDLCVADFIVGARPVFGCGGRGSVGTANG
Ga0207689_1064146323300025942Miscanthus RhizosphereKGHLDGNHGLDRPMVEAGLIDQLDLCVADFIIGARPVFGCGGRGSVGTANG
Ga0207667_1041347913300025949Corn RhizosphereDGAVVRAVLIDQLNGGVADFVIGARPVFGGSGRGSVGTANG
Ga0207712_1098848713300025961Switchgrass RhizosphereDEIHAGFDGHLDGNHGLDRSVVEAGLIDQLDLCVADFIVGARPVFGCSGRGSVGTANG
Ga0207683_1043596213300026121Miscanthus RhizosphereRNLDEIHARLERHLDSNRGLDRPVVEAGLIDQLDLCVSDFIIGARPVFGCSGRGSVGTAN
Ga0257154_107274413300026467SoilQAVLVDQLNLCVADFIVGARPVFGGSGRGSVGTANG
Ga0257161_107630123300026508SoilVVQACLINQLDFVVADFIVGARPVFGGSGRGSVGTANG
Ga0179587_1038960623300026557Vadose Zone SoilGFEGHLYGGHCLDGAVVQTGLIDQLNLCVADFIVGARPVFGGSGRGSIGTANG
Ga0208993_106515123300027480Forest SoilVVRAVLIDQLNLCVADFIVGARPVFCGSGRGSVGTANG
Ga0209179_105636413300027512Vadose Zone SoilGDRFDIAVVQACLIDQLDFVIADFIVGARPVFCGSGRGSVGTANG
Ga0208998_103630823300027524Forest SoilDGGHCLDRAVVQAGLIDQLNLCVADFIIGARPVFGGGGRGSVGTANG
Ga0208984_114695323300027546Forest SoilQHGFDRAVIEAGLINQLDLRVADFIIGARPVFGRGGRGSVGTANG
Ga0208982_106885013300027574Forest SoilGHCLDRAVVQPGLIDQLNLCVADFIIGARPVFGGGGRGSVGTANG
Ga0209220_109868423300027587Forest SoilRLDRAVVKAVLVDQLNLCVADFIVGARPVFGGSGRGSVGTANG
Ga0209076_114993723300027643Vadose Zone SoilAVVQACLIDQLDFVIADFIVGARPVFCGSGRGSVGTANG
Ga0208991_109766123300027681Forest SoilMIDTVLIDQLDFVIADFIVGARPVFAGGGRGSVGTANG
Ga0209068_1044151723300027894WatershedsDGAVVGTVLIDQLDLRVADFIIGARPVFGCGGRGSVGTANG
Ga0209526_1004879943300028047Forest SoilDRAVVRAVLIDQLNLCVADFIVGARPVFGGSGRGSVGTANG
Ga0268265_1053849013300028380Switchgrass RhizospherePCLKRHLDGNHGFNRSVVEAGLIDQLDLCVADFIVGARPVFGCSGRGSVGTANG
Ga0268265_1122576523300028380Switchgrass RhizosphereHGLDRSMVEAGLIDQLDLCVADFIIGARPVFGCGGRGSVGTANG
Ga0247822_1103478413300028592SoilMVEAGLIDQLDLRVADFIIGARPVFGCGGRGSVGTANG
Ga0257175_106696323300028673SoilGDRFYIAVVQACLIDQLDFVIADFIVGARPVFCGSGRGSVGTANG
Ga0307295_1017738813300028708SoilVHARVHGHLDGGHGLDGTMVGAILVDQLDLCVADVVIDARPVFGGLGRGSIGTANG
Ga0307279_1005529523300028709SoilCFDRAVVRAVLIDQLNLGVADFIVGARPVFGCSGRGSVGTANG
Ga0307285_1001364133300028712SoilRFEGHLDGNHGLDRSMVEAGLIDQLDLGVADFIIGARPVFGCGGRGSVGTANG
Ga0307301_1025433423300028719SoilLDEIHAGFDSHLDGNHGLDRSVVEAGLIDQLDLCVADFIVGARPVFGCSGRGSVGTANG
Ga0307288_1028801513300028778SoilRFEGHLDGNHGLDRSMVEAGLIDQLDLCVADFIIGARPVFGCSGRGSVGTANG
Ga0307283_1015202023300028790SoilFHGAVIEARLIDQLDLRVADFIVGARPVFGCSGRGSVGTANG
Ga0307289_1039557923300028875SoilDRSMVEAGLIDQLDLGVADFIIGARPVFGCGGRGSVGTANG
Ga0307277_1010706423300028881SoilHLDGKHGLDRSVVEAGLIDQLDLCVADFIVGARPVFGCSGRGSVGTANG
Ga0307304_1033303023300028885SoilDGNHCLDRSMVEAGLIDQLDLCVADFIIGARPVFGCSGRGSVGTANG
Ga0120082_100255113300029200BiofilmDGRHGFDGALVGAVDVDQLDLCVADIVIDARPVFGDCGRGSVGTANG
Ga0311347_1043453023300029923FenACLIDQLDFVIADFIVGARPVFGGSGRGSVGTANG
Ga0311340_1011425813300029943PalsaVVQACLIDQLDFVVADFIVGARPVFGGSGRGSVGTANG
Ga0311352_1059302013300029944PalsaGHLDGGHCLDRTVVRAVLVDQLNLCVADLIVGARPVFGGSGRGSIGTANG
Ga0311371_1217830923300029951PalsaSAMVEACLVDQLYFVIADFIVGARPVFGGSGRGSVGTANG
Ga0311331_1064141223300029954BogVQACLVDQLDFVIADFIIGARPVFGGSGRGSVGTANG
Ga0302302_107596533300029997PalsaQIHAGLGGHLDGGHGLDGAVIQAGLVDQLDLCVADFIVGARPVFGGGGRGSVGTANG
Ga0311350_1161059913300030002FenSVVEAGLIDQLDLCVSDFIIGARPVFGCSGRGSVGTANG
Ga0311370_1218009613300030503PalsaEGHLDGGHCLDRTVVRAVLVDQLNLCVADLIVGARPVFGGSGRGSIGTANG
Ga0075383_1129652723300030966SoilMVLAVLINQLDFVVADFIVGARPVFGGSGRGSVGTANG
Ga0302308_1041648613300031027PalsaGFHRHLDGGDRLDIAVVQACLIDQLDFVVADFIVGARPVFGGSGRGSVGTANG
Ga0307498_1012981313300031170SoilGHLDGNHGLDRSMVEAGLIDQLDLCVADFIIGARPVFGCSGRGSVGTANG
Ga0310686_10464803113300031708SoilACLIDQLDFVIADFIVGARPVFGSSGRGSVGTANG
Ga0310686_11485911713300031708SoilACLIDQLDFVIADFIVGARPVFGGGGRGSVGTANG
Ga0307474_1073259413300031718Hardwood Forest SoilDIAVIDAGLIDQLDFVIADFIVGARPVFGGSGRGSVGTANG
Ga0307413_1129874923300031824RhizosphereDRSVVEAGLIDQLDLCVADFIVGARPVFGCSGRGSVGTANG
Ga0307410_1013284933300031852RhizosphereSVVEAGLIDQLDLRIADIIIGARPVFGCSGRGSVGTANG
Ga0307412_1185011423300031911RhizosphereLDGNHGLDRSMIEAGLIDQLDLCVADFIIGARPVFGCSGRGSVGTANG
Ga0307409_10151511223300031995RhizosphereGLDRSVVEAGLIDQLDLCVADFIVGARPVFGCSGRGSVGTANG
Ga0308173_1108097313300032074SoilAVLIDQLNGGVADFVIGARPVFGGSGRGSVGTANG
Ga0307415_10025227913300032126RhizosphereNLDEIHARLKRHLDGNHGFNRSVVEAGLIDQLDLCVADFIVGARPVFGCSGRGSVGTANG
Ga0307472_10106426323300032205Hardwood Forest SoilDGHHGLDRSMVGAVLIDQLDLRVADFIIGARPVFGCGGRGSVGTANG
Ga0370502_0266854_3_1373300034156Untreated Peat SoilNRLDLAEVDAGLIDQLDLVVANFIVGARPILSGGGRGSVGTANG


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