NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F048359

Metagenome / Metatranscriptome Family F048359

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F048359
Family Type Metagenome / Metatranscriptome
Number of Sequences 148
Average Sequence Length 53 residues
Representative Sequence MYADDATFESPKLNLPAELLAEVSRRAAVPQGDFRVDGWKPSLLERLVKLFGLG
Number of Associated Samples 123
Number of Associated Scaffolds 148

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 83.78 %
% of genes near scaffold ends (potentially truncated) 27.70 %
% of genes from short scaffolds (< 2000 bps) 80.41 %
Associated GOLD sequencing projects 110
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (68.919 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil
(18.919 % of family members)
Environment Ontology (ENVO) Unclassified
(37.162 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(68.919 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 33.33%    β-sheet: 0.00%    Coil/Unstructured: 66.67%
Feature Viewer
Powered by Feature Viewer

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 148 Family Scaffolds
PF00498FHA 20.95
PF01523PmbA_TldD 19.59
PF13401AAA_22 8.11
PF00795CN_hydrolase 3.38
PF13502AsmA_2 0.68
PF00731AIRC 0.68
PF03631Virul_fac_BrkB 0.68
PF04342DMT_6 0.68
PF04751DUF615 0.68
PF00325Crp 0.68

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 148 Family Scaffolds
COG0312Zn-dependent protease PmbA/TldA or its inactivated homologGeneral function prediction only [R] 19.59
COG1295Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)Function unknown [S] 0.68
COG3028Ribosomal 50S subunit-associated protein YjgA, DUF615 familyTranslation, ribosomal structure and biogenesis [J] 0.68
COG3169Uncharacterized membrane protein, DMT/DUF486 familyFunction unknown [S] 0.68

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms68.92 %
UnclassifiedrootN/A31.08 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001089|JGI12683J13190_1020050All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium585Open in IMG/M
3300001182|JGI12668J13544_1004591Not Available752Open in IMG/M
3300001545|JGI12630J15595_10081793All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium635Open in IMG/M
3300001545|JGI12630J15595_10115980All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium528Open in IMG/M
3300001593|JGI12635J15846_10132735All Organisms → cellular organisms → Bacteria → Proteobacteria1738Open in IMG/M
3300001661|JGI12053J15887_10017305All Organisms → cellular organisms → Bacteria → Proteobacteria4008Open in IMG/M
3300001661|JGI12053J15887_10097352All Organisms → cellular organisms → Bacteria → Proteobacteria1598Open in IMG/M
3300001661|JGI12053J15887_10458076All Organisms → cellular organisms → Bacteria → Proteobacteria610Open in IMG/M
3300002245|JGIcombinedJ26739_101727334All Organisms → cellular organisms → Bacteria → Proteobacteria525Open in IMG/M
3300002557|JGI25381J37097_1009289All Organisms → cellular organisms → Bacteria → Proteobacteria1741Open in IMG/M
3300002908|JGI25382J43887_10181668All Organisms → cellular organisms → Bacteria1032Open in IMG/M
3300002909|JGI25388J43891_1004128All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2968Open in IMG/M
3300002911|JGI25390J43892_10137743Not Available564Open in IMG/M
3300002915|JGI25387J43893_1008465All Organisms → cellular organisms → Bacteria → Proteobacteria1390Open in IMG/M
3300005166|Ga0066674_10227086All Organisms → cellular organisms → Bacteria → Proteobacteria888Open in IMG/M
3300005176|Ga0066679_10094291Not Available1809Open in IMG/M
3300005179|Ga0066684_10068930All Organisms → cellular organisms → Bacteria → Proteobacteria2086Open in IMG/M
3300005181|Ga0066678_10221698Not Available1214Open in IMG/M
3300005184|Ga0066671_10537710All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium752Open in IMG/M
3300005186|Ga0066676_10087690All Organisms → cellular organisms → Bacteria → Proteobacteria1861Open in IMG/M
3300005439|Ga0070711_101637544Not Available563Open in IMG/M
3300005446|Ga0066686_10512532All Organisms → cellular organisms → Bacteria → Proteobacteria816Open in IMG/M
3300005454|Ga0066687_10686919All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium608Open in IMG/M
3300005538|Ga0070731_10077447All Organisms → cellular organisms → Bacteria → Proteobacteria2206Open in IMG/M
3300005538|Ga0070731_10369734All Organisms → cellular organisms → Bacteria → Proteobacteria953Open in IMG/M
3300005541|Ga0070733_10096519All Organisms → cellular organisms → Bacteria → Proteobacteria1883Open in IMG/M
3300005559|Ga0066700_10400049Not Available968Open in IMG/M
3300005560|Ga0066670_10154550All Organisms → cellular organisms → Bacteria → Proteobacteria1343Open in IMG/M
3300005587|Ga0066654_10007923All Organisms → cellular organisms → Bacteria → Proteobacteria3845Open in IMG/M
3300005587|Ga0066654_10348746Not Available804Open in IMG/M
3300005598|Ga0066706_10096373All Organisms → cellular organisms → Bacteria → Proteobacteria2137Open in IMG/M
3300005602|Ga0070762_10732368All Organisms → cellular organisms → Bacteria → Proteobacteria665Open in IMG/M
3300005921|Ga0070766_10193918Not Available1267Open in IMG/M
3300006031|Ga0066651_10015698All Organisms → cellular organisms → Bacteria → Proteobacteria3170Open in IMG/M
3300006046|Ga0066652_100726380Not Available946Open in IMG/M
3300006050|Ga0075028_100457531All Organisms → cellular organisms → Bacteria → Proteobacteria739Open in IMG/M
3300006162|Ga0075030_100878783All Organisms → cellular organisms → Bacteria → Proteobacteria707Open in IMG/M
3300006354|Ga0075021_10228407All Organisms → cellular organisms → Bacteria → Proteobacteria1141Open in IMG/M
3300006796|Ga0066665_10743593Not Available776Open in IMG/M
3300007255|Ga0099791_10093318Not Available1380Open in IMG/M
3300007258|Ga0099793_10402018Not Available673Open in IMG/M
3300009012|Ga0066710_100237719All Organisms → cellular organisms → Bacteria → Proteobacteria2626Open in IMG/M
3300009090|Ga0099827_11612594All Organisms → cellular organisms → Bacteria → Proteobacteria565Open in IMG/M
3300009137|Ga0066709_100533173All Organisms → cellular organisms → Bacteria → Proteobacteria1659Open in IMG/M
3300010043|Ga0126380_11334216All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium626Open in IMG/M
3300010139|Ga0127464_1107496All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium571Open in IMG/M
3300010303|Ga0134082_10041758All Organisms → cellular organisms → Bacteria → Proteobacteria1747Open in IMG/M
3300010321|Ga0134067_10180440All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium767Open in IMG/M
3300010333|Ga0134080_10295846Not Available725Open in IMG/M
3300010333|Ga0134080_10359153All Organisms → cellular organisms → Bacteria → Proteobacteria665Open in IMG/M
3300010360|Ga0126372_13297333All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium502Open in IMG/M
3300011120|Ga0150983_11407035All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium641Open in IMG/M
3300011120|Ga0150983_16559222All Organisms → cellular organisms → Bacteria → Proteobacteria619Open in IMG/M
3300012198|Ga0137364_10018010All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria4270Open in IMG/M
3300012198|Ga0137364_10222565All Organisms → cellular organisms → Bacteria → Proteobacteria1388Open in IMG/M
3300012203|Ga0137399_10221754Not Available1542Open in IMG/M
3300012203|Ga0137399_10279339Not Available1375Open in IMG/M
3300012203|Ga0137399_10556226All Organisms → cellular organisms → Bacteria → Proteobacteria964Open in IMG/M
3300012203|Ga0137399_11617096All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium536Open in IMG/M
3300012208|Ga0137376_10015399All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales5679Open in IMG/M
3300012224|Ga0134028_1156564All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium661Open in IMG/M
3300012351|Ga0137386_10758975Not Available697Open in IMG/M
3300012357|Ga0137384_10511495Not Available985Open in IMG/M
3300012359|Ga0137385_11482974All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium542Open in IMG/M
3300012362|Ga0137361_10155344Not Available2048Open in IMG/M
3300012362|Ga0137361_11195486Not Available683Open in IMG/M
3300012582|Ga0137358_10908492All Organisms → cellular organisms → Bacteria577Open in IMG/M
3300012917|Ga0137395_10265653All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group → Burkholderia pseudomallei → Burkholderia pseudomallei 1710b1209Open in IMG/M
3300012929|Ga0137404_10464411All Organisms → cellular organisms → Bacteria → Proteobacteria1125Open in IMG/M
3300012930|Ga0137407_11188527Not Available724Open in IMG/M
3300012930|Ga0137407_12321852Not Available513Open in IMG/M
3300014157|Ga0134078_10001650All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria5634Open in IMG/M
3300015357|Ga0134072_10265317All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium625Open in IMG/M
3300018431|Ga0066655_10001383All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans8712Open in IMG/M
3300018431|Ga0066655_10064107All Organisms → cellular organisms → Bacteria → Proteobacteria1944Open in IMG/M
3300018433|Ga0066667_10299673Not Available1249Open in IMG/M
3300018433|Ga0066667_10574887Not Available938Open in IMG/M
3300018433|Ga0066667_11516892All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium593Open in IMG/M
3300018468|Ga0066662_10017778All Organisms → cellular organisms → Bacteria → Proteobacteria3903Open in IMG/M
3300018482|Ga0066669_10709045Not Available887Open in IMG/M
3300018482|Ga0066669_11600403All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium595Open in IMG/M
3300019866|Ga0193756_1004574All Organisms → cellular organisms → Bacteria → Proteobacteria1640Open in IMG/M
3300020022|Ga0193733_1000613All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria11364Open in IMG/M
3300020022|Ga0193733_1141293All Organisms → cellular organisms → Bacteria → Proteobacteria656Open in IMG/M
3300020199|Ga0179592_10181857All Organisms → cellular organisms → Bacteria → Proteobacteria956Open in IMG/M
3300020581|Ga0210399_10102533All Organisms → cellular organisms → Bacteria → Proteobacteria2342Open in IMG/M
3300021086|Ga0179596_10230491Not Available910Open in IMG/M
3300021088|Ga0210404_10086840Not Available1552Open in IMG/M
3300021088|Ga0210404_10269026Not Available931Open in IMG/M
3300021403|Ga0210397_10862976All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium700Open in IMG/M
3300021420|Ga0210394_10346762Not Available1304Open in IMG/M
3300021559|Ga0210409_10804205Not Available813Open in IMG/M
3300022531|Ga0242660_1225385All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium525Open in IMG/M
3300022724|Ga0242665_10376315All Organisms → cellular organisms → Bacteria → Proteobacteria514Open in IMG/M
3300024330|Ga0137417_1331935All Organisms → cellular organisms → Bacteria → Proteobacteria702Open in IMG/M
3300024330|Ga0137417_1375449All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans1947Open in IMG/M
3300026295|Ga0209234_1099856All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1095Open in IMG/M
3300026301|Ga0209238_1087533All Organisms → cellular organisms → Bacteria → Proteobacteria1073Open in IMG/M
3300026304|Ga0209240_1063893All Organisms → cellular organisms → Bacteria → Proteobacteria1376Open in IMG/M
3300026310|Ga0209239_1285460Not Available569Open in IMG/M
3300026318|Ga0209471_1000422All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria29296Open in IMG/M
3300026324|Ga0209470_1082636All Organisms → cellular organisms → Bacteria → Proteobacteria1468Open in IMG/M
3300026329|Ga0209375_1076537All Organisms → cellular organisms → Bacteria → Proteobacteria1565Open in IMG/M
3300026329|Ga0209375_1173989All Organisms → cellular organisms → Bacteria → Proteobacteria866Open in IMG/M
3300026332|Ga0209803_1010304All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria4972Open in IMG/M
3300026343|Ga0209159_1047496Not Available2140Open in IMG/M
3300026361|Ga0257176_1028744All Organisms → cellular organisms → Bacteria → Proteobacteria832Open in IMG/M
3300026530|Ga0209807_1003034All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans8182Open in IMG/M
3300026538|Ga0209056_10034576All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria4715Open in IMG/M
3300026538|Ga0209056_10511155Not Available625Open in IMG/M
3300026542|Ga0209805_1055738Not Available1957Open in IMG/M
3300026547|Ga0209156_10397920All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium577Open in IMG/M
3300026920|Ga0208575_1009770Not Available924Open in IMG/M
3300027181|Ga0208997_1024052Not Available869Open in IMG/M
3300027376|Ga0209004_1031225All Organisms → cellular organisms → Bacteria → Proteobacteria872Open in IMG/M
3300027381|Ga0208983_1003484All Organisms → cellular organisms → Bacteria → Proteobacteria2733Open in IMG/M
3300027383|Ga0209213_1047295All Organisms → cellular organisms → Bacteria → Proteobacteria813Open in IMG/M
3300027388|Ga0208995_1071503All Organisms → cellular organisms → Bacteria → Proteobacteria608Open in IMG/M
3300027480|Ga0208993_1009322All Organisms → cellular organisms → Bacteria → Proteobacteria1679Open in IMG/M
3300027521|Ga0209524_1006561All Organisms → cellular organisms → Bacteria → Proteobacteria2247Open in IMG/M
3300027535|Ga0209734_1000990All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria4616Open in IMG/M
3300027537|Ga0209419_1018330Not Available1261Open in IMG/M
3300027562|Ga0209735_1023529All Organisms → cellular organisms → Bacteria → Proteobacteria1269Open in IMG/M
3300027565|Ga0209219_1004667All Organisms → cellular organisms → Bacteria → Proteobacteria2907Open in IMG/M
3300027603|Ga0209331_1064769Not Available915Open in IMG/M
3300027633|Ga0208988_1097620Not Available729Open in IMG/M
3300027643|Ga0209076_1225269All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium509Open in IMG/M
3300027671|Ga0209588_1207379Not Available609Open in IMG/M
3300027748|Ga0209689_1000038All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria61991Open in IMG/M
3300027867|Ga0209167_10377844Not Available771Open in IMG/M
3300027869|Ga0209579_10059394Not Available2027Open in IMG/M
3300027869|Ga0209579_10219929All Organisms → cellular organisms → Bacteria → Proteobacteria1018Open in IMG/M
3300027889|Ga0209380_10397046All Organisms → cellular organisms → Bacteria → Proteobacteria809Open in IMG/M
3300027894|Ga0209068_10244277Not Available996Open in IMG/M
3300028047|Ga0209526_10056522All Organisms → cellular organisms → Bacteria → Proteobacteria2763Open in IMG/M
3300031057|Ga0170834_111424519All Organisms → cellular organisms → Bacteria → Proteobacteria599Open in IMG/M
3300031122|Ga0170822_12626837All Organisms → cellular organisms → Bacteria → Proteobacteria535Open in IMG/M
3300031708|Ga0310686_116713693Not Available1271Open in IMG/M
3300031715|Ga0307476_11014897All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium611Open in IMG/M
3300031720|Ga0307469_10023843All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria3397Open in IMG/M
3300031740|Ga0307468_101629204All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium604Open in IMG/M
3300031753|Ga0307477_10110704All Organisms → cellular organisms → Bacteria → Proteobacteria1911Open in IMG/M
3300031753|Ga0307477_10143229Not Available1667Open in IMG/M
3300031753|Ga0307477_11092981All Organisms → cellular organisms → Bacteria → Proteobacteria520Open in IMG/M
3300031962|Ga0307479_10448448All Organisms → cellular organisms → Bacteria → Proteobacteria1274Open in IMG/M
3300032174|Ga0307470_10975032Not Available672Open in IMG/M
3300032180|Ga0307471_100278947Not Available1744Open in IMG/M
3300032955|Ga0335076_10769887All Organisms → cellular organisms → Bacteria → Proteobacteria844Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil18.92%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil17.57%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil16.89%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil12.84%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil6.08%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil6.08%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil5.41%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil4.05%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds2.70%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.70%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil2.70%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.35%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.35%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.68%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.68%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001089Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3EnvironmentalOpen in IMG/M
3300001182Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2EnvironmentalOpen in IMG/M
3300001545Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1EnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300001661Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300002557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cmEnvironmentalOpen in IMG/M
3300002908Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cmEnvironmentalOpen in IMG/M
3300002909Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cmEnvironmentalOpen in IMG/M
3300002911Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cmEnvironmentalOpen in IMG/M
3300002915Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cmEnvironmentalOpen in IMG/M
3300005166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123EnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005179Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133EnvironmentalOpen in IMG/M
3300005181Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127EnvironmentalOpen in IMG/M
3300005184Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120EnvironmentalOpen in IMG/M
3300005186Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125EnvironmentalOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005446Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135EnvironmentalOpen in IMG/M
3300005454Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136EnvironmentalOpen in IMG/M
3300005538Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1EnvironmentalOpen in IMG/M
3300005541Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1EnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005560Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119EnvironmentalOpen in IMG/M
3300005587Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103EnvironmentalOpen in IMG/M
3300005598Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006031Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100EnvironmentalOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006050Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014EnvironmentalOpen in IMG/M
3300006162Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012EnvironmentalOpen in IMG/M
3300006354Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012EnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300007255Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1EnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010139Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_8_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010303Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015EnvironmentalOpen in IMG/M
3300010321Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015EnvironmentalOpen in IMG/M
3300010333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012224Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_4_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014157Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300015357Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaGEnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300019866Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1m1EnvironmentalOpen in IMG/M
3300020022Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2EnvironmentalOpen in IMG/M
3300020199Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300021086Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300021088Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-MEnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300022531Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022724Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300024330Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300026295Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026301Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)EnvironmentalOpen in IMG/M
3300026310Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026318Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)EnvironmentalOpen in IMG/M
3300026324Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)EnvironmentalOpen in IMG/M
3300026329Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)EnvironmentalOpen in IMG/M
3300026332Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)EnvironmentalOpen in IMG/M
3300026343Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)EnvironmentalOpen in IMG/M
3300026361Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-BEnvironmentalOpen in IMG/M
3300026530Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)EnvironmentalOpen in IMG/M
3300026538Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)EnvironmentalOpen in IMG/M
3300026542Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)EnvironmentalOpen in IMG/M
3300026547Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)EnvironmentalOpen in IMG/M
3300026920Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN397 (SPAdes)EnvironmentalOpen in IMG/M
3300027181Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027376Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027381Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027383Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027388Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027480Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027521Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027535Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027537Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027562Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027565Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027603Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027633Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027643Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)EnvironmentalOpen in IMG/M
3300027671Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)EnvironmentalOpen in IMG/M
3300027748Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)EnvironmentalOpen in IMG/M
3300027867Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027869Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027889Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)EnvironmentalOpen in IMG/M
3300027894Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300028047Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300031057Oak Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031122Oak Spring Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032955Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12683J13190_102005023300001089Forest SoilMYADDATLESPQLNLPADLQAEVSRRAAARPVDFHVDGWKPSLLERLAKLFGPGLT*
JGI12668J13544_100459123300001182Forest SoilMYADDATFESPQLNLPADELAEISRRAAVRQGDFRVDGWKPSLLERLAKLFGRD*
JGI12630J15595_1008179313300001545Forest SoilMYADDATFESPQLNLPAEELAEISRRAAVRQGDFRVDGWKPSLFERIAKLFGLD*
JGI12630J15595_1011598013300001545Forest SoilMYADDATFESPQLNLPAEELAEISRRAAVRQGDFRVDGWKPSLLERIAKLFGLN*
JGI12635J15846_1013273523300001593Forest SoilMYADDATFESPQLNMPADELAEISRRAAVRHGDFRVDGWKPSLLERLAKLFGLG*
JGI12053J15887_1001730533300001661Forest SoilMYADDATFESPQLNLPADELAEISRRAAVRQGDFRVDGWKPSLLERIAKLFGRD*
JGI12053J15887_1009735233300001661Forest SoilMYADDAAFESPKLNVPAELLAEVSRRAVVPQGDFRVDGWKPSLLERLAKLFGLG*
JGI12053J15887_1045807633300001661Forest SoilMYADDATFESPQLNLPAEELAEISRRAAVRQGDFRVDGWKPSLLERIAKLFGLD*
JGIcombinedJ26739_10172733423300002245Forest SoilNPRKGIPMYADDATFESRQLNLPADELAEISRRASVRQGDFRVDGWKPSLLERLAKLFGLG*
JGI25381J37097_100928923300002557Grasslands SoilMYVDDATLESPKLNLPAELLAEVSRRAAVPQGDFRVDGWKPSLLERLVELFGLG*
JGI25382J43887_1018166823300002908Grasslands SoilMMMTADDATLESPQLKLPAELLAEVSRRNAAQKTDFRVEGWKPTLLERIARLFGLV*
JGI25388J43891_100412833300002909Grasslands SoilMYADDATLESPKLNLPAELLAEVSRRAAVPQGDFRVDGWKPSLLERLVELFGLG*
JGI25390J43892_1013774313300002911Grasslands SoilMYADDATFESPKLNLPAELLAEVSRRAAVPQGDFRVDGWKPSLLERLVKLFG
JGI25387J43893_100846513300002915Grasslands SoilMYADDATLESPKLNLPAELLAEVSRRAAVPQGDFRVDGWKPSLLERL
Ga0066674_1022708623300005166SoilMYADDATFESPKLNLPEELLAEVSRRAAAAQGDFRVDGWKPSLLERLVKLFGLS*
Ga0066679_1009429123300005176SoilMYADDATFESPKLNLPAELLAEVSRRAVVPQGDFRVDGWKPSLLERLAKLFGLG*
Ga0066684_1006893033300005179SoilMYADDATFESPKLNLPAELLAEVSRRAAVPQGDFRVDGWKPSLLERLVKLFGLG*
Ga0066678_1022169813300005181SoilTQGILMMMTADDATLESPQLKLPAELLAEVSRRNAAQKTDFRVEGWKPTLLERIARLFGLV*
Ga0066671_1053771013300005184SoilMMMTVDDATLESPQLQLPAELLAEVSRRNAAQKTDFRVEGWKPTVLERIARLFGLV*
Ga0066676_1008769013300005186SoilMMTADDATLESPQLNLPAELLAEVSRRNAAQKTDFRVEGWKPTLLERI
Ga0070711_10163754413300005439Corn, Switchgrass And Miscanthus RhizosphereASRTREKEGVPMYADDATLESPQLNLPADLQAEVSRRAAARPVDFHVDGWKPSLLERLAKLFGLG*
Ga0066686_1051253223300005446SoilMYADDATFESPKLDLPAELLAEVSRRAAEPQGDFRVDGWKPSLLDRLVKLFGLS*
Ga0066687_1068691923300005454SoilMMMTFDDATLESPQLKLPAELLAEVSRRNAAQKTDFRVEGWKPTVLERIARLFGLL*
Ga0070731_1007744723300005538Surface SoilMHAQHAEDSTLEAPQLQLPPELLAEVNRRAPARQSDFKVDGWKPSLIERLTSLFGLR*
Ga0070731_1036973423300005538Surface SoilMHAEDSTLEAPQLNLPPDLLAEVSRRAAARQTDFKVDGWKPSLLERIASL
Ga0070733_1009651913300005541Surface SoilDSTIEAPQLKLPAELLSEVSRRKKQQTDFRVDGWKPSLLERLAKLFGLG*
Ga0066700_1040004933300005559SoilMMMTADDATLESPQLKLPAELLAEVSRRNAAQKTDFRVEGWKPTLLERIAMLFGLV*
Ga0066670_1015455023300005560SoilMYADDATFESPKLNLPAELLAEVSRRAAVPQGDFRVDGWKPSLLERLV
Ga0066654_1000792313300005587SoilMMMTADDATLESPQLKLPAELLAEVSRRNAVQKTDFRVEGWKPTLLERIARLFGLV*
Ga0066654_1034874613300005587SoilESPKLNLPAELLAEVSRRAAVPQGDFRVDGWKPSLLERLVKLFGLG*
Ga0066706_1009637323300005598SoilMMMTADDATLESPQLQLPAELLAEVSRRNAAQKTDFRVEGWKPTLLERIARLFGLV*
Ga0070762_1073236833300005602SoilIEAPQLKLPAELLSEVSRRKKQQTDFRVDGWKPSLLERLAKLFGLG*
Ga0070766_1019391823300005921SoilMYADDATFESPQLNLPADELAEISRRAAVRQGDFRVDGWRPSLLERIAKLFGLD*
Ga0066651_1001569833300006031SoilMMTADDATLESPQLKLPAELLAEVSRRNAAQKTDFRVEGWKPTLLERIARLFGLV*
Ga0066652_10072638013300006046SoilSPQLKLPAELLAEVSRRNAAQKTDFRVEGWKPTLLERIARLFGLV*
Ga0075028_10045753123300006050WatershedsMYADDATFESPQLNLPADELAEISRRAAVRQGDFRVDGWKPSLLERIAKLFGLE*
Ga0075030_10087878323300006162WatershedsMFSEDATIEAPQLKLPAELLSEVSRRNQQQTDFRVDGWKPSLLERLVKLFGLA*
Ga0075021_1022840713300006354WatershedsMYADDATLESPQLNLPADELAEISRRAAVRQGDFRVDGWKPSLLERIAKLFGLE*
Ga0066665_1074359333300006796SoilMYADDATFESPKLNLPEELLAEVSRRAVVPQGDFRVDGWKPSLLERLAKLFGLG*
Ga0099791_1009331833300007255Vadose Zone SoilMYADDATLESPQLNLPADLQAEVSRRAAARPVDFHVDGWKPSLLERLAKLFGLG*
Ga0099793_1040201823300007258Vadose Zone SoilMYADDATFESPKLNLPAELLAEVSRRAVVPQGDFRVDGWKPSLLERLAKLFGFG*
Ga0066710_10023771923300009012Grasslands SoilMYADDATFESPKLNLPEELLAEVSRRAAAAQGDFRVDGWKPSLLERLVKLFGLS
Ga0099827_1161259423300009090Vadose Zone SoilMYADDATFESPQLNLSADELAEISRRAAVRQGDFRVDGWKPSLLERIAKLFGLD*
Ga0066709_10053317333300009137Grasslands SoilMYADDATFESPKLNLPEELLAEVSRRGAAAQGDFRVDGWKPSLLERLVKLFGLS*
Ga0126380_1133421613300010043Tropical Forest SoilMYAEDATLEAPQLNLPADLLAEVSRRAATQKTDFQVDGWKPSIFERITRLFGLG*
Ga0127464_110749623300010139Grasslands SoilMMTSDDATLESPQLKLPAELLAEVSRRNAAQKTDFRVEGWKPTLLERIARLFGLV*
Ga0134082_1004175833300010303Grasslands SoilMYADDATLESPKLNLPAELLAEVSRRAAVPQGDFRVDGWKPSLLERLVELFGLS*
Ga0134067_1018044033300010321Grasslands SoilMMMTVDDATLESPQLKLPAELLAEVSRRNAAQKTDFRVEGWKPTLLERIARLFGLV*
Ga0134080_1029584613300010333Grasslands SoilSPQLELPAELLAEVSRRNAAQKTDFRVEGWKPTLLERIARLFGLV*
Ga0134080_1035915323300010333Grasslands SoilMYADDATFESPKLDLPAELLAEVSRRAAVPQGDFRVDGWKPSLLDRLVKLFGLS*
Ga0126372_1329733313300010360Tropical Forest SoilMYAEDATLEAPQLNLPADLLAEVSRRAATQKTDFQVDGWKPSLLERLTRLFGLG*
Ga0150983_1140703513300011120Forest SoilMHAEDSTLEAPQLNLPPDLLAEISRRASARQTDFKVDGWKPSLLERIASLFGLG*
Ga0150983_1655922213300011120Forest SoilMYADDATFESPQLNLPADELAEISRRAAVRQGDFRVDGWKPSLLERIAKLFGLNN*
Ga0137364_1001801023300012198Vadose Zone SoilMMMTADDATLESPQLKFPAELLAEVSRRNAAQKTDFRVEGWKPTLLERIARLFGLV*
Ga0137364_1022256523300012198Vadose Zone SoilMYADDATFESPKLNLPEELLAEVSRRAAAPQWDFRVDGWKPSLLERLVKLFGLS*
Ga0137399_1022175433300012203Vadose Zone SoilMYADDAAFESPKLNVPAELLAEVSRRAVVPQGDFRVDGWKPSLLERLAKLFGLS*
Ga0137399_1027933913300012203Vadose Zone SoilPMYADDATLESPQLNLPADLQAEVSRRAAARPVDFHVDGWKPSLLERLAKLFGLG*
Ga0137399_1055622633300012203Vadose Zone SoilMYADDATLESQQLNLPADELAEISRRAAVRQGDFRVDGWKPSLLERIAKLFGLD*
Ga0137399_1161709623300012203Vadose Zone SoilMYADDATFESPQLNLPADELAEISRRAAVRQGDFRVDGWKPSLLERIAKLFGLD*
Ga0137376_1001539933300012208Vadose Zone SoilMYADDATFESPKLDLPEELLAEVSRRAAAAQGDFRVDGWKPSLLERLVKLFGLS*
Ga0134028_115656423300012224Grasslands SoilMMMTADDATLESPQLKLPAELLAEVSRRNAAQKTDFCVEGWKPTLLERIARLFGLV*
Ga0137386_1075897533300012351Vadose Zone SoilSPKLNLPEELLAEVSRRAAAAQGDFRVDGWKPSLLERLVKLFGLS*
Ga0137384_1051149513300012357Vadose Zone SoilMMMTADDATLESPQLTLPAELLAEVSRRNAAQKTDFRVEGWKPTLLERIARLFGLV*
Ga0137385_1148297413300012359Vadose Zone SoilADDATLESPQRKLPAELLAEVSRRNAAQKTDFRVEGWKPTLLERIARLFGLV*
Ga0137361_1015534433300012362Vadose Zone SoilMYADDATFESPKLNLPAELLAEVSRRAVVPHGDFRVDGWKPSLLERLAKLFGFG*
Ga0137361_1119548633300012362Vadose Zone SoilPQLNLPADLQAEVSRRAAARPVDFHVDGWKPSLLERLAKLFGLG*
Ga0137358_1090849223300012582Vadose Zone SoilMYADDATLESPQLNLPADLQAEVSRRAAARPVDFHVDGWNPSLLERLAKLFGLG*
Ga0137395_1026565323300012917Vadose Zone SoilMYAEDTVDTPRLNIPAELLAESSRRAAAHREDFRVDGWKPSLLERL
Ga0137404_1046441113300012929Vadose Zone SoilMYADDATLESPQLNLPADLQAEVSRRAAARPVDFHVDG
Ga0137407_1118852733300012930Vadose Zone SoilATLESPQLNLPADLQAEVSRRAAARPVDFHVDGWKPSLLERLAKLFGLG*
Ga0137407_1232185223300012930Vadose Zone SoilMYADDATFESPKLNLPAELLAEVSRRAVVPQGDFRVDGW
Ga0134078_1000165043300014157Grasslands SoilMMMTADDATLESPQLKLPAELLAEVSRRNAAQKTDFRVEGWKPTLLESIARLFGLV*
Ga0134072_1026531713300015357Grasslands SoilDATLESPKLNLPAELLAEVSRRAAVPQGDFRVDGWKPSLLERLVELFGLG*
Ga0066655_1000138343300018431Grasslands SoilMMMTADDATLESPQLKLPAELLAEVSRRNAVQKTDFRVEGWKPTLLERIARLFGLV
Ga0066655_1006410723300018431Grasslands SoilMYADDATFESPKLNLPAELLAEVSRRAAVPQGDFRVDGWKPSLLERLVELFGLG
Ga0066667_1029967323300018433Grasslands SoilMMMTADDATLESPQLKLPAELLAEVSRRNAAQKTDFRVEGWKPTLLERIARLFGLV
Ga0066667_1057488733300018433Grasslands SoilMYADDATFESPKLNLPAELLAEVSRRAAVPQGDFRVDGWKPSLLERLVKLFGLG
Ga0066667_1151689223300018433Grasslands SoilMYADDATLESPKLNLPAELLAEVSRRAAVPQGDFRVDGWKPSLLERLVELFGLG
Ga0066662_1001777843300018468Grasslands SoilMMMTADDATLESPQLKLPAELLAEVSRRNAAQKTDFRVEGWKPTVLERIARLFGLL
Ga0066669_1070904513300018482Grasslands SoilMYVDDATLESPKLNLPAELLAEVSRRAAVPQGDFRVDGWKPSLLERLVELFGLG
Ga0066669_1160040333300018482Grasslands SoilSPQLKLPAELLAEVSRRNAAQKTDFRVEGWKPTLLERIARLFGLV
Ga0193756_100457423300019866SoilMYADDATLESPQLNLPADLQAEVSRRAAARPVDFHVDGWKPSLLERLAKLFGLG
Ga0193733_1000613143300020022SoilMYADDATLESPQLNLPADLQAEVSRRAAACPVDFHVDGWKPSLLERLAKLFGLG
Ga0193733_114129313300020022SoilADDATFESPQLNLPPEELAEISRRAAVSQGDFRVDGWKPSLLERIAKLIGLN
Ga0179592_1018185723300020199Vadose Zone SoilMYADDATFESPKLNLPAELLAEVSRRAVVPQGDFRVDGWKPSLLERLAKLFGFG
Ga0210399_1010253343300020581SoilMHAEDSTLEAPQLNLPPDLLAEISRRASARQTDFKVDGWKPSLLERIASLFGLG
Ga0179596_1023049123300021086Vadose Zone SoilMYADDATFESPKLNLPAELLAEVSRRAVVPQGDFRVDGWKPSLLERLAKLFGLG
Ga0210404_1008684023300021088SoilMYADDATFESPQLNMPAEELAEISRRAAVRQGDFRVDGWKPSLLERIAKLFGLNN
Ga0210404_1026902613300021088SoilMHAEDSTLEAPQLNLPADLLAEVSRRASARQTDFKVDGWKPSLLERIASLFGLG
Ga0210397_1086297613300021403SoilMHAEDSTLEAPQLNLPPDLLAEISRRASARQTDFKVDGWKPSLLERI
Ga0210394_1034676223300021420SoilMYADDATFESPKLNLPQELLAEVSRRGVVPQGDFRVDGWKPSLLERLAKLFGLG
Ga0210409_1080420513300021559SoilAANQRKGRTMHAEDSTLEAPQLNLPPDLLAEISRRASARQTDFKVDGWKPSLLERIASLFGLG
Ga0242660_122538513300022531SoilTMHAEDSTLEAPQLNLPADLLAEVSRRASARQTDFKVDGWKPSLLERIASLFGLG
Ga0242665_1037631513300022724SoilMYADDATFESPQLNLPAEELAEISRRAAVRQGDFRVDGWKPSLFERIAKLFGLD
Ga0137417_133193523300024330Vadose Zone SoilMYADDATLESQQLNLPADELAEISRRAAVRQGDFRVDGWKPSLLERIAKLFGLD
Ga0137417_137544963300024330Vadose Zone SoilMYADDATFESQQLNLPADELAEISRRAAVRQGDFRVDGWKPSLLERIAKLFGLD
Ga0209234_109985633300026295Grasslands SoilMMMTFDDATLESPQLKLPAELLAEVSRRNAAQKTDFRVEGWKPTVLERIARLFGLL
Ga0209238_108753313300026301Grasslands SoilMYADDATFESPKLNLPEELLAEVSRRAAAPQWDFRVDGWKPSLLERLVRL
Ga0209240_106389313300026304Grasslands SoilMYADDATFESPKLNVPAELLAEVSRRAVVPQGDFRVDGWKPSLLERLAKLGIGAQLLRRI
Ga0209239_128546023300026310Grasslands SoilMYADDATFESPKLNLPAELLAEVSRRAAVPQGDFRVDGWKPSLLERLVK
Ga0209471_1000422183300026318SoilMMMTFDDATLESPQLKLPAELLAEVSRRNAAQKTDFRVEGWKPTVLERIARLFGLV
Ga0209470_108263613300026324SoilMMMTADDATLESPQLNLPAELLAEVSRRNAAQKTDFRVEGWKPTLLERI
Ga0209375_107653713300026329SoilMMMTADDATLESPQLKLPAELLAEVSRRNAAQKTDFCVEGWKPTLLERIARLFGLV
Ga0209375_117398913300026329SoilMYADDATFESPKLNLPEELLAEVSRRGAAAQGDFRVDGWKPSLLERLVKLFGLS
Ga0209803_101030443300026332SoilMMMTADDATLESPQLKLPAELLAEVSHCNAAQKTDFRVEGWKPTLLERIARLFGLV
Ga0209159_104749623300026343SoilMYADDATFESPKLDLPAELLAEVSRRAAEPQGDFRVDGWKPSLLDRLVKLFGLS
Ga0257176_102874413300026361SoilMYADDATFESPQLNLPADELAEISRRAAVRQGDFRVDGWKPSLLERIAKLFGLD
Ga0209807_100303433300026530SoilMMMTADDATLESPQLKLPAELLAEVSRRNAALKTDFRVEGWKPTLLERIARLFGLV
Ga0209056_1003457633300026538SoilMMMTADDATLESPQLQLPAELLAEVSRRNAAQKTDFRVEGWKPTLLERIARLFGLV
Ga0209056_1051115523300026538SoilMYADDATFESPKLNLPEELLAEVSRRGAAAQGDFRVDGWKPSLLERL
Ga0209805_105573823300026542SoilMMMTVDDATLESPQLQLPAELLAEVSRRNAAQKTDFRVEGWKPTVLERIARLFGLV
Ga0209156_1039792013300026547SoilNVHRESPTQGILMMMTADDATLESPQLKLPAELLAEVSRRNAAQKTDFRVEGWKPTLLERIARLFGLV
Ga0208575_100977023300026920SoilMYADDATFESPKLNLPAELLAEVSRRAVVPQGDFRVDGWKPSLLERIAKLFGLD
Ga0208997_102405223300027181Forest SoilMYADDATFESPQLNLPAEELAEISRRAAVRQGDFRVDGWKPSLLERIAKLFGLD
Ga0209004_103122533300027376Forest SoilMTADDATLESPQLKLPADLLAEVSRRAAAQKTDFRVEGWKPTLLERIARLFGLV
Ga0208983_100348423300027381Forest SoilMYADDATFESPQLNLPADELAEISRRAAVRQGDFRVDGWKPSLLERIAKLFGRD
Ga0209213_104729513300027383Forest SoilMYADDAAFESPKLNVPAELLAEVSRRAVVPQGDFRVDGWKPSLLERLAKLFGLG
Ga0208995_107150313300027388Forest SoilMYADDAAFESPKLNVPAELLAEVSRRAVVPQGDFRVDGWKPSLLER
Ga0208993_100932223300027480Forest SoilMYADDAAFESPKLNVPAELLAEVSRRAVVPQGDFRVDGWKPSLLERLAKLF
Ga0209524_100656113300027521Forest SoilMYADDATFESPQLNLPAEELAEISRRAAVRQGDFRVDGWKPSLLERIAKLFGLN
Ga0209734_100099013300027535Forest SoilMYADDATLESPQLNLPADLQAEVSRRAAARPVDFHVDGWKPSLLERLAKLFGPGLT
Ga0209419_101833013300027537Forest SoilMYADDATFESPQLNLPADELAEISRRAAVRQGDFRVDGWKPSLLERLAKLFGRD
Ga0209735_102352913300027562Forest SoilMYADDATLESPQLNLPADLQAEVSRRAAARPVDFHVDGWKPSLLERLAKLFGPGLS
Ga0209219_100466723300027565Forest SoilMYADDATFESPQLNMPADELAEISRRAAVRHGDFRVDGWKPSLLERLAKLFGLG
Ga0209331_106476923300027603Forest SoilMYADDATFESPQLNLPADELAEISRRAAVRQGDFRVDGWKPSLFERIAKLFGLD
Ga0208988_109762023300027633Forest SoilMYADDATFESPQLNLPADELAEISRRAAVRQGDFRVDGWKPSLLERIAKLFGLE
Ga0209076_122526923300027643Vadose Zone SoilMYADDATLESPQLNLPADLQAEVSRRAAARPVDFHVDGWKPSLLERLAKLFGLD
Ga0209588_120737913300027671Vadose Zone SoilSPQLNLPADLQAEVSRRAAARPVDFHVDGWKPSLLERLAKLFGLG
Ga0209689_1000038473300027748SoilMMMTADDATLESPQLKLPAELLAEVSRRNAAQKTDFRVEGWKPTLLERIAMLFGLV
Ga0209167_1037784433300027867Surface SoilSQDSTIEAPQLKLPAELLSEVSRRKKQQTDFRVDGWKPSLLERLAKLFGLG
Ga0209579_1005939433300027869Surface SoilMHAQHAEDSTLEAPQLQLPPELLAEVNRRAPARQSDFKVDGWKPSLIERLTSLFGLR
Ga0209579_1021992923300027869Surface SoilMHAEDSTLEAPQLNLPPDLLAEVSRRAAARQTDFKVDGWKPSLLERIASLFGLG
Ga0209380_1039704633300027889SoilMYADDATFESPQLNLPADELAEISRRAAVRQGDFRVDGWRPSLLERIAKLFGLD
Ga0209068_1024427723300027894WatershedsMYADDATLESPQLNLPADELAEISRRAAVRQGDFRVDGWKPSLLERIAKLFGLE
Ga0209526_1005652233300028047Forest SoilMYADDATFESRQLNLPADELAEISRRASVRQGDFRVDGWKPSLLERLAKLFGLG
Ga0170834_11142451913300031057Forest SoilMHFEETIEAPQLKLPADLLAEVSRRNKGRTTDFRVEGWKPSFMERILKIFGLS
Ga0170822_1262683723300031122Forest SoilMHFEDTIEAPQLKLPADLLAEVSRRNKGRTTDFRVEGWKPSFMERILKIFGLS
Ga0310686_11671369333300031708SoilMYADDATIEAQQLQLPPDLLSEVSRRGSGRHADFGVDAWKPSLLERLARLFGLGSARGAR
Ga0307476_1101489713300031715Hardwood Forest SoilMYADDATLESPKLNLPAELLAEVSRRTVVPQGDFRVDGWKPSLLERLTKLFGLG
Ga0307469_1002384353300031720Hardwood Forest SoilMTADDATLESPQLQLPADLLAEVSRRAAAQKTDFRVEGWKPTLLERIARLFGLV
Ga0307468_10162920423300031740Hardwood Forest SoilMHAAAEDSTLESPQLNLPADLLAEISRRAASRQTDFKVDGWKPSLLERLASLFGRG
Ga0307477_1011070423300031753Hardwood Forest SoilMTADDATLESPQLQLPAELLAEVSRRAAAQKTDFRVEGWKPTLLERVARLFGLV
Ga0307477_1014322933300031753Hardwood Forest SoilMYADDATLESPKLNLPAELLAEVSRRTVVPQGDFRVDGWKPSLLERLAKLFGLG
Ga0307477_1109298113300031753Hardwood Forest SoilRNPMYADDATLESPKLNLPAELLAEVSRRTVVPQGDFRVDGWKPSLLERLTKLFGLG
Ga0307479_1044844823300031962Hardwood Forest SoilMTADDATLESPQLQLPAELLAEVSRRAAAQKTDFRVEGWKPTLLERIARLFGLV
Ga0307470_1097503213300032174Hardwood Forest SoilEGVPMYADDATLESPQLNLPADLQAEVSRRAAARPVDFHVDGWKPSLLERLAKLFGLG
Ga0307471_10027894723300032180Hardwood Forest SoilMYADDATLESPQLNLPAEELAEISRRAAVRQGDFRVDGWKPSLLERIAKLFGLD
Ga0335076_1076988713300032955SoilMHLEDTMEAPQLKLPADLLAEVSRRNKGRTTDFRVEGWKPSLMERVLRLFGLK

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.