Metagenome / Metatranscriptome Family F048973

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F048973
Family Type	Metagenome / Metatranscriptome
Number of Sequences	147
Average Sequence Length	59 residues
Representative Sequence	VVHMQGFVFDREAIGKLVLSLWKFVNEDHGVITRSDPAGDIRMTVDFSHVIPPTDLNI
Number of Associated Samples	125
Number of Associated Scaffolds	147

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	13.79 %
% of genes near scaffold ends (potentially truncated)	80.27 %
% of genes from short scaffolds (< 2000 bps)	92.52 %
Associated GOLD sequencing projects	119
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (97.279 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (12.245 % of family members)
Environment Ontology (ENVO)	Unclassified (34.694 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (44.898 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 23.26% β-sheet: 18.60% Coil/Unstructured: 58.14%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 147 Family Scaffolds
PF00756	Esterase	1.36
PF00586	AIRS	0.68
PF00027	cNMP_binding	0.68
PF13676	TIR_2	0.68
PF00076	RRM_1	0.68
PF03279	Lip_A_acyltrans	0.68
PF01436	NHL	0.68
PF14559	TPR_19	0.68
PF04828	GFA	0.68
PF12680	SnoaL_2	0.68
PF00543	P-II	0.68
PF00903	Glyoxalase	0.68
PF13683	rve_3	0.68
PF07786	HGSNAT_cat	0.68
PF00561	Abhydrolase_1	0.68

COG ID	Name	Functional Category	% Frequency in 147 Family Scaffolds
COG0347	Nitrogen regulatory protein PII	Signal transduction mechanisms [T]	0.68
COG1560	Palmitoleoyl-ACP: Kdo2-lipid-IV acyltransferase (lipid A biosynthesis)	Lipid transport and metabolism [I]	0.68
COG3503	Uncharacterized membrane protein, DUF1624 family	Function unknown [S]	0.68
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.68
COG4261	Predicted acyltransferase, LPLAT superfamily	General function prediction only [R]	0.68

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.28 %
Unclassified	root	N/A	2.72 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.28 %
Unclassified	root	N/A	2.72 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.28 %
Unclassified	root	N/A	2.72 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	55.10 %
Unclassified	root	N/A	2.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.36 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.68 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	54.42 %
Unclassified	root	N/A	2.72 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.68 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.68 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.68 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	50.34 %
Unclassified	root	N/A	2.72 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.68 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.68 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.68 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	50.34 %
Unclassified	root	N/A	2.72 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.68 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.68 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.68 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	50.34 %
Unclassified	root	N/A	2.72 %
Methylotuvimicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylotuvimicrobium	0.68 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.68 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.68 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	50.34 %
Unclassified	root	N/A	2.72 %
Methylotuvimicrobium alcaliphilum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylotuvimicrobium → Methylotuvimicrobium alcaliphilum	0.68 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.68 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.68 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	50.34 %
Unclassified	root	N/A	2.72 %
Methylotuvimicrobium alcaliphilum 20Z	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylotuvimicrobium → Methylotuvimicrobium alcaliphilum → Methylotuvimicrobium alcaliphilum 20Z	0.68 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.68 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.68 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_17388318	All Organisms → cellular organisms → Bacteria	2851	Open in IMG/M
2166559005\|cont_contig118012	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
2170459005\|F1BAP7Q01C2ZVX	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	526	Open in IMG/M
2170459009\|GA8DASG02GMAGL	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
2170459010\|GIO7OMY02I2ISR	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	548	Open in IMG/M
2170459010\|GIO7OMY02JZS9O	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
2170459013\|GO6OHWN02IBETF	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
2189573001\|GZR05M102FH9E1	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
2209111022\|2221195070	All Organisms → cellular organisms → Bacteria	1143	Open in IMG/M
3300000955\|JGI1027J12803_107184923	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	586	Open in IMG/M
3300001977\|JGI24746J21847_1068030	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300004156\|Ga0062589_102552258	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	530	Open in IMG/M
3300004479\|Ga0062595_101734290	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	590	Open in IMG/M
3300005176\|Ga0066679_10586085	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300005180\|Ga0066685_10464254	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	878	Open in IMG/M
3300005186\|Ga0066676_10261530	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1133	Open in IMG/M
3300005294\|Ga0065705_10692379	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	656	Open in IMG/M
3300005295\|Ga0065707_10890779	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300005330\|Ga0070690_100281262	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1187	Open in IMG/M
3300005332\|Ga0066388_100391146	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2036	Open in IMG/M
3300005332\|Ga0066388_103291871	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	825	Open in IMG/M
3300005332\|Ga0066388_104785972	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	689	Open in IMG/M
3300005333\|Ga0070677_10884991	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	515	Open in IMG/M
3300005339\|Ga0070660_101626428	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300005345\|Ga0070692_11303230	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300005354\|Ga0070675_102121342	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	518	Open in IMG/M
3300005366\|Ga0070659_100583671	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	959	Open in IMG/M
3300005456\|Ga0070678_100232214	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1538	Open in IMG/M
3300005466\|Ga0070685_11360291	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	544	Open in IMG/M
3300005535\|Ga0070684_100083324	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2833	Open in IMG/M
3300005539\|Ga0068853_101803091	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300005556\|Ga0066707_10434369	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	853	Open in IMG/M
3300005578\|Ga0068854_100852000	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	798	Open in IMG/M
3300005587\|Ga0066654_10322918	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	834	Open in IMG/M
3300005764\|Ga0066903_109006080	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	505	Open in IMG/M
3300005843\|Ga0068860_102338705	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	555	Open in IMG/M
3300006031\|Ga0066651_10071568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylotuvimicrobium → Methylotuvimicrobium alcaliphilum → Methylotuvimicrobium alcaliphilum 20Z	1681	Open in IMG/M
3300006046\|Ga0066652_100735690	All Organisms → cellular organisms → Bacteria	940	Open in IMG/M
3300006046\|Ga0066652_101892785	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300006605\|Ga0074057_12138625	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	774	Open in IMG/M
3300006791\|Ga0066653_10574387	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	571	Open in IMG/M
3300006796\|Ga0066665_11062385	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300006854\|Ga0075425_102459286	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	577	Open in IMG/M
3300009093\|Ga0105240_11338408	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	754	Open in IMG/M
3300009100\|Ga0075418_11995317	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300009101\|Ga0105247_10161278	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1485	Open in IMG/M
3300009137\|Ga0066709_103023703	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300009137\|Ga0066709_103966926	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300009176\|Ga0105242_10483170	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1174	Open in IMG/M
3300009177\|Ga0105248_10098900	All Organisms → cellular organisms → Bacteria	3287	Open in IMG/M
3300009177\|Ga0105248_13294076	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300009545\|Ga0105237_10302552	All Organisms → cellular organisms → Bacteria	1602	Open in IMG/M
3300010040\|Ga0126308_10107249	All Organisms → cellular organisms → Bacteria	1719	Open in IMG/M
3300010043\|Ga0126380_10384731	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1035	Open in IMG/M
3300010043\|Ga0126380_10824284	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	762	Open in IMG/M
3300010047\|Ga0126382_11483453	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300010361\|Ga0126378_13459352	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300010364\|Ga0134066_10293458	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300010375\|Ga0105239_10055606	All Organisms → cellular organisms → Bacteria	4340	Open in IMG/M
3300010375\|Ga0105239_12872082	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	562	Open in IMG/M
3300010396\|Ga0134126_10546216	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1330	Open in IMG/M
3300010397\|Ga0134124_12252235	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300012198\|Ga0137364_10576015	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	848	Open in IMG/M
3300012198\|Ga0137364_10863431	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300012200\|Ga0137382_10510693	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	854	Open in IMG/M
3300012202\|Ga0137363_11071535	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	685	Open in IMG/M
3300012205\|Ga0137362_11145442	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	660	Open in IMG/M
3300012209\|Ga0137379_11066671	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	713	Open in IMG/M
3300012349\|Ga0137387_10464888	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	918	Open in IMG/M
3300012361\|Ga0137360_10341672	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1251	Open in IMG/M
3300012361\|Ga0137360_11764850	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300012362\|Ga0137361_10397557	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1266	Open in IMG/M
3300012582\|Ga0137358_10498425	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	821	Open in IMG/M
3300012683\|Ga0137398_10601735	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	760	Open in IMG/M
3300012903\|Ga0157289_10371319	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300012915\|Ga0157302_10032104	All Organisms → cellular organisms → Bacteria	1394	Open in IMG/M
3300012924\|Ga0137413_10411484	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	975	Open in IMG/M
3300012927\|Ga0137416_10580309	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	974	Open in IMG/M
3300012929\|Ga0137404_10013574	All Organisms → cellular organisms → Bacteria	5719	Open in IMG/M
3300012930\|Ga0137407_10635125	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1003	Open in IMG/M
3300012957\|Ga0164303_10183397	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1142	Open in IMG/M
3300012960\|Ga0164301_11927971	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300012971\|Ga0126369_12831780	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	568	Open in IMG/M
3300012976\|Ga0134076_10102678	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1135	Open in IMG/M
3300012986\|Ga0164304_10220163	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1253	Open in IMG/M
3300012988\|Ga0164306_10893933	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300012988\|Ga0164306_11417640	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	592	Open in IMG/M
3300013296\|Ga0157374_11421149	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	717	Open in IMG/M
3300013306\|Ga0163162_12618964	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	580	Open in IMG/M
3300014166\|Ga0134079_10221219	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300014497\|Ga0182008_10817360	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300014969\|Ga0157376_12552053	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300015359\|Ga0134085_10498445	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	557	Open in IMG/M
3300015372\|Ga0132256_103431789	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300015374\|Ga0132255_100240127	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2584	Open in IMG/M
3300015374\|Ga0132255_100751026	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1452	Open in IMG/M
3300015374\|Ga0132255_102973969	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300015374\|Ga0132255_104563155	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	587	Open in IMG/M
3300015374\|Ga0132255_104619324	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300016387\|Ga0182040_10078546	All Organisms → cellular organisms → Bacteria	2167	Open in IMG/M
3300018061\|Ga0184619_10450946	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300018071\|Ga0184618_10296863	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300018072\|Ga0184635_10113463	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1075	Open in IMG/M
3300018076\|Ga0184609_10507756	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	548	Open in IMG/M
3300018431\|Ga0066655_11038210	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	569	Open in IMG/M
3300018468\|Ga0066662_12659150	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300019361\|Ga0173482_10675401	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	530	Open in IMG/M
3300019879\|Ga0193723_1044977	All Organisms → cellular organisms → Bacteria	1305	Open in IMG/M
3300020008\|Ga0193757_1017362	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	718	Open in IMG/M
3300021168\|Ga0210406_10725385	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300021344\|Ga0193719_10187949	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	884	Open in IMG/M
3300021344\|Ga0193719_10200181	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	853	Open in IMG/M
3300022534\|Ga0224452_1154597	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	706	Open in IMG/M
3300022534\|Ga0224452_1191319	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	629	Open in IMG/M
3300025290\|Ga0207673_1002367	All Organisms → cellular organisms → Bacteria	2147	Open in IMG/M
3300025315\|Ga0207697_10517771	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300025926\|Ga0207659_11476862	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	582	Open in IMG/M
3300025930\|Ga0207701_10170114	All Organisms → cellular organisms → Bacteria	1926	Open in IMG/M
3300025930\|Ga0207701_10251322	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1543	Open in IMG/M
3300025931\|Ga0207644_11271021	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	619	Open in IMG/M
3300025932\|Ga0207690_10987456	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	700	Open in IMG/M
3300025935\|Ga0207709_10570280	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	893	Open in IMG/M
3300025944\|Ga0207661_10535142	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1072	Open in IMG/M
3300026118\|Ga0207675_102213689	All Organisms → cellular organisms → Bacteria → Proteobacteria	565	Open in IMG/M
3300026121\|Ga0207683_10252072	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1611	Open in IMG/M
3300026304\|Ga0209240_1233799	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	559	Open in IMG/M
3300026547\|Ga0209156_10283532	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
3300027682\|Ga0209971_1088154	Not Available	757	Open in IMG/M
3300027903\|Ga0209488_10640838	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	767	Open in IMG/M
3300028807\|Ga0307305_10344730	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	676	Open in IMG/M
3300028807\|Ga0307305_10531532	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300028875\|Ga0307289_10313721	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	645	Open in IMG/M
3300028884\|Ga0307308_10399195	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300030945\|Ga0075373_11630164	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	939	Open in IMG/M
3300031446\|Ga0170820_10096635	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300031446\|Ga0170820_10816755	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300031446\|Ga0170820_16796594	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300031469\|Ga0170819_10233762	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	599	Open in IMG/M
3300031474\|Ga0170818_101547972	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300031719\|Ga0306917_10526428	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	929	Open in IMG/M
3300031753\|Ga0307477_10605387	Not Available	738	Open in IMG/M
3300031858\|Ga0310892_10383632	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	911	Open in IMG/M
3300031890\|Ga0306925_11714478	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	606	Open in IMG/M
3300031941\|Ga0310912_10426666	All Organisms → cellular organisms → Bacteria	1033	Open in IMG/M
3300032180\|Ga0307471_102768526	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	72.79%
Host-Associated	Host-Associated	26.53%
Engineered	Engineered	0.68%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	68.71%
Plants	Host-Associated → Plants	26.53%
Aquatic	Environmental → Aquatic	4.08%
Modeled	Engineered → Modeled	0.68%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	68.71%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.97%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.56%
Sediment	Environmental → Aquatic → Sediment	4.08%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.68%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	62.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.52%
Loam	Environmental → Terrestrial → Soil → Loam	6.12%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.12%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.44%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.08%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.08%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.36%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.68%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	34.69%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	17.01%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.52%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.12%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.44%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.08%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.08%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.40%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.72%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.36%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.36%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.68%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.68%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.24%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.84%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.08%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.40%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.40%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	3.40%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.40%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.72%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.04%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.04%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.04%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.04%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.04%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.36%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.36%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	1.36%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.36%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.36%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.36%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.36%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.36%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.36%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.36%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.36%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.36%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.36%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.68%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.68%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.68%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.68%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.68%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.68%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.68%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental	Open in IMG/M
2170459009	Grass soil microbial communities from Rothamsted Park, UK - July 2009 indirect DNA Tissue lysis 0-10cm	Environmental	Open in IMG/M
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
2170459013	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis soil at the rocks surface 0-21cm	Environmental	Open in IMG/M
2189573001	Grass soil microbial communities from Rothamsted Park, UK - FD2 (NaCl 300g/L 5ml)	Environmental	Open in IMG/M
2209111022	Grass soil microbial communities from Rothamsted Park, UK - Chitin enrichment	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001977	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5	Host-Associated	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300020008	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1m2	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300025290	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5	Host-Associated	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027682	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300030945	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_01600160	2088090014	Soil	ESVVHMEGFVFDREAIGRLVLSLWKFVNEDHGVITRSDPAGDIRMTVDFSHVIPPTDLNI
cont_0615.00007060	2166559005	Simulated	DAVIDYMIKGGESVVHMHGFVFDREVIGKLVLSLWKFVNEDHGVITRSDPAGDIRMTVDFSQVIPPTDLKI
E41_03551780	2170459005	Grass Soil	MQGFVFDREAIGKLVLSLWKFVNEDHGVITRSDPAGDIRMTVDFSNVIPPTDLNI
F47_09029440	2170459009	Grass Soil	MQGFVFDREAIRKLVLSLWKFVNEDHGVITRSDPAGDIRMTVDFSQVIPSTDLNI
F62_04348350	2170459010	Grass Soil	QGFVFDREAIGKLVLSLWKFVNEDHGVITGSDPAGDIRMTVDFSNVIPPTDLNL
F62_07342100	2170459010	Grass Soil	MHGFVFDREVIGKLVLSLWKFVNEDHGVITRSDPTGDIRMTVDFSHVIPPTDLKI
N57_01471180	2170459013	Grass Soil	MHGFVFDREVVGKLVLSLWKFVNEDHGVITRSDPAGDIRLTVDFSNVIPPTDLNI
FD2_01955330	2189573001	Grass Soil	STVVHMHGFVFDREVIGKLVLSLWKFVNEDHGVITRSDPAGDIRLTVDFSQVIPPTDLNI
2222015421	2209111022	Grass Soil	MIKGGESVVHMQGFVFDREAIGKLVLSLRKFVNEDHGVITHSDPAGDIRMTVDFSQVIPPTDLNI
JGI1027J12803_1071849231	3300000955	Soil	KGGESVVHMEGFVFNREAIGKLVSSLWKFVNEDHGLITRSDPAGDIRMTVDFSDVIPPTDLKL*
JGI24746J21847_10680302	3300001977	Corn, Switchgrass And Miscanthus Rhizosphere	DAVIDYMIKGGECVVHMHGFVFDREAIQKLVLSLSKFVNEDHGVITRSDSAGDIRMTVDFSDVIPPTDLKI*
Ga0062589_1025522582	3300004156	Soil	MHGFVFDREAIGKLVSSLWRFANEDHGVITRSDPAGGVRLTVDFSQVIPPTDLKI*
Ga0062595_1017342901	3300004479	Soil	MIKGGESIVHKVGFVFNREAIGRLVSSLWKFVNEDHGVITRSDPAGDIRITVDFSDVIPP
Ga0066679_105860851	3300005176	Soil	MQGFVFDREAIGKLVLSLWRFVNEDHGVITRSDPAGDIRMTVDFSHVIPATDLKI*
Ga0066685_104642541	3300005180	Soil	MIKGGESVVHMQGFVFDREAIGRLVLSLWKFVNEDHGVITRSDPAGDIRMTVDFSNVIPPTDLKI*
Ga0066676_102615301	3300005186	Soil	FDREAIGKLVLSLWKFVNEDHGVITRSDPAGDIRMTVDFSHVIPPTDLNI*
Ga0065705_106923792	3300005294	Switchgrass Rhizosphere	MQGFVFDREVIGKLVLSLWKFVNEDHGVITRSDSAGDIRMTVDFSHVIPPTDLNI*
Ga0065707_108907792	3300005295	Switchgrass Rhizosphere	DAVIDYMIKGGESVVHMHGFVFDREAIQKLVLSLSKFVNEDHGVITRSDSAGDIRMTVDFSDVIPPTDLKI*
Ga0070690_1002812623	3300005330	Switchgrass Rhizosphere	DREAIGKLVSSLWRFANEDHGVITRSDPAGDVRLTVDFSQVIPPTDLKI*
Ga0066388_1003911466	3300005332	Tropical Forest Soil	AVIDHMIKGGESVVHMQGFVFDREVIGKLVLSLWKFVNEDHGVITRSDPAGDIRMTVDFSHVILPTDLNI*
Ga0066388_1032918712	3300005332	Tropical Forest Soil	AVIDHMIKGGESVVHMQGFVFDREVIGKLVLSLWKFVNEDYGVITRSDSVGDIRLTVDFSHVIPPTDLNI*
Ga0066388_1047859721	3300005332	Tropical Forest Soil	FDREVIGKLVLSLWKFVNEDHGVITRCDPAGEIRMTVDFSHVIPPTDLNI*
Ga0070677_108849911	3300005333	Miscanthus Rhizosphere	MHGFVFDREAIGKLVSSLWRFANEDHGVITRSDPAGDVRLTVDFSQVIPPTDLKI*
Ga0070660_1016264282	3300005339	Corn Rhizosphere	VVHMHGFVFDREAIGKLVSSLWRFANEDHGVITRSDPAGDVRLTVDFSQVIPPTDLKI*
Ga0070692_113032302	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	VVHMHGFVFDREAIQKLVLSLSKFVNEDHGVITRSDSAGDIRMTVDFSDVIPPTDLKI*
Ga0070675_1021213422	3300005354	Miscanthus Rhizosphere	DREAIRKLVSSLWRFVNEDHGVITRSDPAGDVRLTVDFSQVIPPTDLKI*
Ga0070659_1005836712	3300005366	Corn Rhizosphere	MIKGGESVVHMEGFVFNREAIGRLVSSLWKFVNEDHGVITRSDPAGDIRMTVDFSDVIPPTDLKI*
Ga0070678_1002322143	3300005456	Miscanthus Rhizosphere	FDREAIRKLVSSLWRFVNEDHGVITRSDPAGDVRLTVDFSQVIPPTDLKI*
Ga0070685_113602911	3300005466	Switchgrass Rhizosphere	SVVHMHGFVFDREAIGKLVSSLWRFANEDHGVITRSDPAGDVRLTVDFSQVIPPTDLKI*
Ga0070684_1000833246	3300005535	Corn Rhizosphere	KGGESAVHMHGFVFDREAIGKLVLSLSKFANEDHGVITRSDPAGDIRMTVDFSHVIPPTDLKV*
Ga0068853_1018030911	3300005539	Corn Rhizosphere	VVHMHGFVFDREVIGKLVLSLWKFVHEDHGVITRSDAAGDIRMTVDFSQVIPSTDLNI*
Ga0066707_104343692	3300005556	Soil	GGESVVHMQGFVFDREAIGRLVLSLWKFVHEDHGVITRSDPAGDIRMTVDFSNVIPPTDLNI*
Ga0068854_1008520002	3300005578	Corn Rhizosphere	SVVHMHGFVFDREAIRKLVSSLWRFVNEDHGVITRSDPAGDVRLTVDFSQVIPPTDLKI*
Ga0066654_103229182	3300005587	Soil	MQGFVFDREAIGKLVLSLWKFVNEDHGVITRSDPAGDIRMTVDFSLVIPPTDLNI*
Ga0066903_1090060801	3300005764	Tropical Forest Soil	GESVVHMHGFVFDREVIGKLVLSLWKFVNEDHGVITRCDPAGEIRMTVDFSHVIPPTDLNI*
Ga0068860_1023387052	3300005843	Switchgrass Rhizosphere	MIKGGESVVHMEGFVFNREAIGRLVSSLWKFVNEDHGVITRSDPAGDIRMTVDFSDVIPPTDVKI*
Ga0066651_100715683	3300006031	Soil	GGESVVHMHGFVFDREVIGKLVLSLWKFVNEDHGVITRSDPAGDIRMTVDFSQIIPPTDLNI*
Ga0066652_1007356901	3300006046	Soil	VVHMQGFVFDREAIGKLVLSLWKFVNEDHGVITRSDPGGDIRMTVDFSNVIPPTDLNI*
Ga0066652_1018927851	3300006046	Soil	VVHMQGFVFDREVIRKLVLSLWKFVNEDHGVITRSDPAGDIRLTVDFSQVIPP
Ga0074057_121386251	3300006605	Soil	FDREVIGKLVSSLWKFVNEDHGVITRSDPAGDIRLTVDFSQVIPPTDLNI*
Ga0066653_105743872	3300006791	Soil	FDREVIGKLVLSLWKFVNEDHGIITRSDPAGDIRLTVDFSQIIPPTDLNF*
Ga0066665_110623851	3300006796	Soil	MQGFVFDREAIGKLVLSLWKFVNEDHGVITRSDPTGDIRLTVDFSQVIPPTDLNI*
Ga0075425_1024592862	3300006854	Populus Rhizosphere	MIKGGESVVHMHGFVFDREAIGKLVLSLSKFANEDHGVITRSDPAGDIRMTVDFSHVIPPTDLKV*
Ga0105240_113384081	3300009093	Corn Rhizosphere	MHGFVFDREAIGKLVSSLWKFVNEDHGVITRSDSAGDIRMTVDFSDVIPPTDLKI*
Ga0075418_119953171	3300009100	Populus Rhizosphere	VHMHGFVFDRDAIGKLISSLWKFVNEDHGVITRSDPAGDIRMTVDFSDVIPPSDLKI*
Ga0105247_101612781	3300009101	Switchgrass Rhizosphere	VHMHGFVFDREAIGKLVSSLWRFVNEDHGVITRSDPAGDVRLTVDFSQIIPSTDLNI*
Ga0066709_1030237031	3300009137	Grasslands Soil	GGESVVHMQGFVFDREAIGKLVLSLWKFVNEDHGVITRSDLGGDIRMTVDFSNVIPPTDLNI*
Ga0066709_1039669261	3300009137	Grasslands Soil	GGESVVHMQGFVFDREAIGKLVLSLWKFVNEDHGVITRSDPGGDIRMTVDFSNVIPPTDLNI*
Ga0105242_104831702	3300009176	Miscanthus Rhizosphere	HMQGFAFDRDAIGKLVSSLWKFVNEDHGVITRSDPVGDIRLTVDFSNVIPPTDLKPLQS*
Ga0105248_100989001	3300009177	Switchgrass Rhizosphere	ECVVHMHGFVFDREATQKLVLSLSKFVNEDHGVITRSDSAGDIRMTVDFSDVIPPTDLKI
Ga0105248_132940761	3300009177	Switchgrass Rhizosphere	REAIGKLVLSLWKFVNEDHGVITRSDPAGDIRMTVDFSQVISPTDLNEVRSS*
Ga0105237_103025522	3300009545	Corn Rhizosphere	MHGFVFDREVIGKLVLSLWKFVHEDHGVITRSDAAGDIRMTVDFSQVIPSTDLNI*
Ga0126308_101072491	3300010040	Serpentine Soil	HMQGFVFDREVIGKLVLSLWKFVNEDHGVVTRSDPAGDIRMTVDFSQVIPPNDFNI*
Ga0126380_103847311	3300010043	Tropical Forest Soil	VFDREVIGKLVLSLWKFVNEDHGVITRCDPAGEIRMTVDFSHVIPPTDLNIYWDSDQLD*
Ga0126380_108242841	3300010043	Tropical Forest Soil	IDAVIDYMIKGGESVVHMHGFVFDREVIGKEVLSLWKLVNEDHSVITRYDPAGDIRLTVDFSNVIPPTDLNI*
Ga0126382_114834532	3300010047	Tropical Forest Soil	HMIKGGESVVHMQGFVFDREVIGKLVLSLWKFVNEDHGVITRSDLAGDIRLTVDFSHVIPPTDLNI*
Ga0126378_134593521	3300010361	Tropical Forest Soil	EVIGKLVLSLWKFVNEDHGVITRSDPVGDIRMTVDFSHVIPPTDLNI*
Ga0134066_102934581	3300010364	Grasslands Soil	MHGFVFDREAIGKLVLSLWKFVNEDHGVITRSDPAGDIRLTVDFSQVIPPTELNI*
Ga0105239_100556061	3300010375	Corn Rhizosphere	MMKRGESAVHMHGFVFDREAIQKLVLSLSKFVNEDHGVITRSDSAGDIRMTVDFSDVIPPTDLKI*
Ga0105239_128720822	3300010375	Corn Rhizosphere	FVFDREAIGKLVLSLRKFVNEDHGVITRSDPAGDIRMTVDFSQVIPLTDLNI*
Ga0134126_105462161	3300010396	Terrestrial Soil	REAIGKLVSSLWKFVNEDHGVITRSDPAGDIRMTVDFSQVISPTDLNEVRSS*
Ga0134124_122522352	3300010397	Terrestrial Soil	FDREVIGKLVLSLWKFVHEDHGVITRSDAAVDIRLTVDFSQVIPPTDLNI*
Ga0137364_105760151	3300012198	Vadose Zone Soil	GFVFNREVLGKLVLSLWKFANEDHGVITRSDLAGDIRMTVDFSDVIPPTDLKI*
Ga0137364_108634311	3300012198	Vadose Zone Soil	KGGETAVHMHGFVFDREVTGKLVLSLWKFVNEDHGVITRSDPAGDIRLTVDFSQVIPPTDLNI*
Ga0137382_105106931	3300012200	Vadose Zone Soil	MHGFVFDREVIGKLVLSLWKFVNEDHGVITRSDPAGDIRLTVDFSQVIPPTDLNI*
Ga0137363_110715352	3300012202	Vadose Zone Soil	HMIKGGESVVHMQGFVFDREVIGRLVLSLWKFVNEDHGVITHSDPAVDIRMTVDFSNVIPPTDLNI*
Ga0137362_111454422	3300012205	Vadose Zone Soil	AVIDHMIKGGESVVHMQGFVFDREAIGKLVLSLRKFVNEDHGVITRSDPAGDIRMTVDFSNVIPPTELNI*
Ga0137379_110666712	3300012209	Vadose Zone Soil	VVHMQGFVFDREAIGKLVLSLWKFVNEDHGVITRSDPAGDIRMTVDFSNVIPPTDLNI*
Ga0137387_104648881	3300012349	Vadose Zone Soil	MHGFVFGREAIGKLVLSLWKFVNEDHGVITRSDPAGDIRMTVDFSDVIPPTDLNI*
Ga0137360_103416722	3300012361	Vadose Zone Soil	MQGFVFDREVIGKLVLSLRKFVNEDHGVITRSDPAGDIRMTVDFSNVIPPGDLHT*
Ga0137360_117648502	3300012361	Vadose Zone Soil	FVFDREAIGKLVLSLWKFVNEDHGVITHSDPAGDIRMTVDFSQVIPPTDLDI*
Ga0137361_103975571	3300012362	Vadose Zone Soil	HMIKGGESVVHMQGFVFDREVIGKLVLSLWKFVNEDHGVITRSDPGGDIRLTVDFSQVIPPTDLKI*
Ga0137358_104984251	3300012582	Vadose Zone Soil	HMQAFVFDREAIGRLVLSLWKFVNEDHGVITRSDPASDIRMTVDFSNVIPPTDLNI*
Ga0137398_106017352	3300012683	Vadose Zone Soil	MIKGGESVVHMEGFVFDREVIGKLVLSLWKFVNEDHGVITRSDPAGDIRMTVDFSHVIPPTDLNI*
Ga0157289_103713191	3300012903	Soil	IDAVIDYMIKGGGSVVHMHGFVFDREAIGKLVSSLWRFANEDHGVITRSDPAGDVRLTVDFSQVIPPTDLKI*
Ga0157302_100321043	3300012915	Soil	GESVVHMHGFVFDREAIRKLVSSLWRFVNEDHGVITRSDPAGDVRLTVDFSQVIPPTDLKI*
Ga0137413_104114841	3300012924	Vadose Zone Soil	GGESVVHMHGFVFDREAIGKLVLSLRKFVNEDHGVITRSDPAGDIRMTVDFSHVIPPTDLNI*
Ga0137416_105803092	3300012927	Vadose Zone Soil	MQGFVFDREAIRKLVLSLWKFVNEDHGVITRSDPAGDIRMTVDFSHVIPSTDLKI*
Ga0137404_100135746	3300012929	Vadose Zone Soil	HMHGFVFDREAIRKLVLSLWKFVNEDHGVITRSDPAGDIRMTVDFSHVIPSTDLKI*
Ga0137407_106351252	3300012930	Vadose Zone Soil	IDHMIKGGESVVHMQGFVFDREAIGKLVSSLWKFLNEDHGVITRSDPAGDIRITVDFSNVIPPTDLNI*
Ga0164303_101833971	3300012957	Soil	HMHGFVFDREAIGKLILSLWKFVNEDHGVITRSDPAGDIRMTVDFSNVIPPTDLKI*
Ga0164301_119279711	3300012960	Soil	GESVVHMQGFVFDREAIGKLVLSLWKFVNEDHGVIARSDPAGDIRMTVDFSNVIPPTDLKI*
Ga0126369_128317802	3300012971	Tropical Forest Soil	VHMQGFVFDREAIGKLVLSLWKFVNEDQGVITRSDPAGDIRMTVDFSYVIPPTDLKI*
Ga0134076_101026781	3300012976	Grasslands Soil	MIKGGESVVHMHGFVFGREAIGKLVLSLWKFVNEDHGVITRSDPVGDIRMTVDFSNVIPPTDLKI*
Ga0164304_102201632	3300012986	Soil	HMIKGGESVVHMQGFVFDREAIGKLVLSLWKFVNEDHGVIARSDPAGDIRMTVDFSHVIPPTDLNI*
Ga0164306_108939332	3300012988	Soil	FDREAIGKLVLSLCKFVNEDHGVITRSDPAGDIRLTVDFSQVIPPTDLNI*
Ga0164306_114176402	3300012988	Soil	VHMHGFVFDREAIGRLVLSLWKFVNEDHGVITRSDPAGDIRMTVDFSRVIPPTDLKT*
Ga0157374_114211492	3300013296	Miscanthus Rhizosphere	VHMHGFVFDREAIGKLVSSLWKFVNEDHGVITRSDPAGDIRMTVDFSQAISPTDLNEVRSS*
Ga0163162_126189642	3300013306	Switchgrass Rhizosphere	FVFDREAIGRLVLSLWKFVDEDHGVITRSDPAGDIRMTVDFSNVIPPTDLKI*
Ga0134079_102212193	3300014166	Grasslands Soil	MHGFVFDREAIGKLVLSLWKFVNEDHGVITRSDPAGDIRLTVDFSQVIPPTDLNI*
Ga0182008_108173601	3300014497	Rhizosphere	HMHGFVFDREAVGNLVSSLSRFVKEDHGVITRSGPTGDIRMTVDFSHVIPNSDLNI*
Ga0157376_125520531	3300014969	Miscanthus Rhizosphere	MHGFVFDREAIGKLVSSLWKFVNEDHGVITRSDPAGDIRMTVDFSQVISPTDLNEVRSS*
Ga0134085_104984452	3300015359	Grasslands Soil	FVFDREAIGRLVSSLWKFVNEDHGLITRSDPAGDIRMTVDFFNVIPPTDLNI*
Ga0132256_1034317892	3300015372	Arabidopsis Rhizosphere	YMIKGGESVVHMHGFVFDREAIGKLVLSLRKFVNEDHGVISRSDPAGDIRMTVDFSQVIPATDLNI*
Ga0132255_1002401271	3300015374	Arabidopsis Rhizosphere	ESVVHMQGFVFDREAIGKLILSLWKFVNKDHGVITRSDPAGDIRLTVDFSHVILPTDLKI
Ga0132255_1007510261	3300015374	Arabidopsis Rhizosphere	REAIGKLILSLRKFVNEDHGVISRSDPAGDIRMTVDFSQVIPPTDLNI*
Ga0132255_1029739691	3300015374	Arabidopsis Rhizosphere	SVVHMHGFVFDREVIGKLVLSLWKFVNEDHGAITRSDPAGDIRLTVDFSQVIPPTDLKI*
Ga0132255_1044576891	3300015374	Arabidopsis Rhizosphere	DREVIGKLVLSLWKFVNEDHGVITRSDPAGDIRLTVDFSNVIPPTDLNI*
Ga0132255_1045631552	3300015374	Arabidopsis Rhizosphere	KGGESAVHMHGFVFDREAIGKLVLSLSKFVNEDHGVITRSDSAGDIRMTVDFSDVIPPTDLKI*
Ga0132255_1046193241	3300015374	Arabidopsis Rhizosphere	SVVHMQGFVFDREAIGNLVLSLWKFVNEDHGVIARSDQAGDIRMTVDFSHVIPPTDLNI*
Ga0182040_100785461	3300016387	Soil	MIKGEESVVHMQGFVFDREVIGKLVLSLWKFVNEDHGVITRSDLAGDIRLTVDFSHVIPPTDLNI
Ga0184619_104509462	3300018061	Groundwater Sediment	MQGFVFDRDVIGRLVLSLWKFVNEDHGVITRSDPAGDIRMTVDFSHVIPPTDLKI
Ga0184618_102968632	3300018071	Groundwater Sediment	MQGFVFDRDVIGRLVLSLWKFVNEDHGVITRSDPAGDIRMTVDFSDVIPPTELNI
Ga0184635_101134632	3300018072	Groundwater Sediment	DREVIGNLISSLWKFVNEDHGVITRSDPAGDIRLTVDFSQVIPPTDLII
Ga0184609_105077561	3300018076	Groundwater Sediment	AVIDHMIKGGESVVHMQGFVFDREAIGKLVLSLWKFVNEDHGVITHSDPGGDIRMTVDFSHVIPPTDLKI
Ga0066655_110382102	3300018431	Grasslands Soil	VHLHGFVFDREVLGKLVLSLWKFANEDRAVITRSGPAGEIRMTVDFCQVIPPTDLKI
Ga0066662_126591502	3300018468	Grasslands Soil	HMIKGGESVVHMQGFVFDREAIRRLVLSLWKFVNEDHGVITRSDPAGDIRMTVDFSNVIPPADLNI
Ga0173482_106754012	3300019361	Soil	GGESVVHMHGFVFDREAIGKLVSSLWRFVNEDHGVITRSDPAGDVRLTVDFSQVIPPTDLKI
Ga0193723_10449773	3300019879	Soil	VVHMQGFVFDREAIGKLVSSLWKFLNEDHGVITRTDPGGDIRMIVDFSNVIPSTELNI
Ga0193757_10173622	3300020008	Soil	FGREAIGKLVLSLWKFVNEDHGVITRSDPGGDVRMTVDFSNVIPPTDLKI
Ga0210406_107253851	3300021168	Soil	MIKDGDSAVRMQGFLFDREVIGRLVLALWKFVNEDHGVITRSSPAGNRFQITVDFSHVIPPIHLSM
Ga0193719_101879492	3300021344	Soil	VFDREVIGRLVLSLWKFVNEDHGVITRSDPAGDIRMTVDFSHVIPPTDLNI
Ga0193719_102001811	3300021344	Soil	FVFDREAIGKLVLSLWKFVNEDHGVITRSDPAGDIRMTVDFSNVIPPTDLKI
Ga0224452_11545972	3300022534	Groundwater Sediment	RPIEGFVFDREAIGKLVLSLWKFVNEDHGVITRSDPGGDIRMTVDFSDVIPPTELNI
Ga0224452_11913191	3300022534	Groundwater Sediment	FVFDREAIGKLVLSLWKFVNEDHGVITHSDPAGDIRMTVDFSSVIPPTDLKI
Ga0207673_10023674	3300025290	Corn, Switchgrass And Miscanthus Rhizosphere	KGGECVVHMHGFVFDREAIQKLVLSLSKFVNEDHGVITRSDSAGDIRMTVDFSDVIPPTDLKI
Ga0207697_105177711	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	RGESAVHMHGFVFDREAIGKLVSSLWKFVNEDHGVITRSDPAGDIRMTVDFSQVISPTDLNEVRSS
Ga0207659_114768621	3300025926	Miscanthus Rhizosphere	GFVFDREAIGKLVSSLWKFVNEDHGVITRSDPAGDIRMTVDFSQVISPTDLNEVRSS
Ga0207701_101701141	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	DYMIKGGESAVHMHGFVFDREAIGKLTSSLWKFVNEDHGVITRSEPTGDIRMTVDFSHVIPPTDLKI
Ga0207701_102513223	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MIKGGESVVHMEGFVFNREAIGRLVSSLWKFVNEDHGVITRSDPAGDIRMTVDFSDVIPPTDLKI
Ga0207644_112710212	3300025931	Switchgrass Rhizosphere	VFDREAIGKLVLSLRKFVNEDHGVITRSDPAGDIRTTVDFSHVIPPTELNI
Ga0207690_109874561	3300025932	Corn Rhizosphere	FVFDREVIGKLVLSLWKFVHEDHGVITRSDAAGDIRMTVDFSQVIPSTDLNI
Ga0207709_105702801	3300025935	Miscanthus Rhizosphere	VVHMHGFVFDREAIQKLVLSLSKFVNEDHGVITRSDSAGDIRMTVDFSDVIPPTDLKI
Ga0207661_105351421	3300025944	Corn Rhizosphere	GECVVHMHGFVFDRDAIQKLVLSLSKFVNEDHGVITRSDSAGDIRMTVDFSDVIPPTDLK
Ga0207675_1022136891	3300026118	Switchgrass Rhizosphere	IKGGESVVHMHGFVFDREAIGKLVLSLWKFVNEDHGFLTRSDPAGDIRLTVDFSQVIPPADLNI
Ga0207683_102520721	3300026121	Miscanthus Rhizosphere	FDREAIRKLVSSLWRFVNEDHGVITRSDPAGDVRLTVDFSQVIPPTDLKI
Ga0209240_12337991	3300026304	Grasslands Soil	VVHMQGFVFDREAIGKLVLSLWKFVNEDHGVITRSDPAGDIRMTVDFSHVIPPTDLNI
Ga0209156_102835321	3300026547	Soil	KYPLLTVRENGASPESVVHMQGFVFDREAIGKLVLSLWKFVNEDHGVITRSDPGGDIRMTVDFSNVIPPTDLNI
Ga0179587_103691221	3300026557	Vadose Zone Soil	DLEAIGKLVLSLWKFVNEDHGVITRSDPAGDIRMTVDFSHVIPSTDLKI
Ga0209971_10881542	3300027682	Arabidopsis Thaliana Rhizosphere	DREAIGKLVVSLWKFVSEDHGVITRSDPAGDIRMTVDFSQVIPSTDLKI
Ga0209488_106408381	3300027903	Vadose Zone Soil	IKGGESVVHMQGFAFDREAIGRLVLSLWKFVNEDHGVITRSDPGGDIRLTVDFSQVIPPTDLKI
Ga0307305_103447301	3300028807	Soil	KGGESVVHMQGFVFDREAIGKLVLSLWKFVNEDHGVITRSDPGGDIRMTVDFSNVIPPTELNI
Ga0307305_105315322	3300028807	Soil	VVHMHGFVFDREVIGKLVSSLWKFVNEDHGVIARSDPAGDIRLTVDFSHVIPPTDLNV
Ga0307289_103137211	3300028875	Soil	SGSSCADREVIGRLVLSLWKFVNEDHGVITHSDPAGDIRMTADFSNVIPPTDLNI
Ga0307308_103991951	3300028884	Soil	MIKGGESVVHIQGFVFDREAIGKLVLSLWKFVNEDHGVITHSDPAGDIRMTVDFSSVIP
Ga0075373_116301641	3300030945	Soil	SVVHMQGFVFDREAIGKLVLSLWKFVNEDHGVITRSDPAGDIRMTVDFSQVIPPTDLNI
Ga0170820_100966351	3300031446	Forest Soil	MQGFVFDREAIEKLVLSLRKFVNEDHGVITRSDPAGDIRMTVDFSQVIPPTDLNI
Ga0170820_108167551	3300031446	Forest Soil	MIKGGESVVHMQGFVFDREAIGKLVLSLWKFVNEDHSVITRSDPAGDIRLTVDFSQVIPPTDLNI
Ga0170820_167965942	3300031446	Forest Soil	GGDSVVHMQGFVFDREAIGKLVLSLWKFVNEDHGVITRSDPAGDIRMTVDFSNVIPPTDLNL
Ga0170819_102337622	3300031469	Forest Soil	GESVVHMQGFVFDREAIGKLVLSLWKFVNEDHGVITRSDPAGDIRMTVDFSQVIPPTDLN
Ga0170818_1015479722	3300031474	Forest Soil	GFVFDREVIGKLVLSLGKFVNEDHGVITRSDPAGDIRLTVDFSSVIPRTDLNI
Ga0306917_105264281	3300031719	Soil	MIKGEESVVHMQGFVFDREVIGKLVLSLWKFVNEDHGVITRSDPAADIRMTVDFSHVIPPTDLNI
Ga0307477_106053872	3300031753	Hardwood Forest Soil	MQGFLFDREVIGRLVLALWKFVNEDHGVITRSSPAGNSFQITIDFSHVIPPIHLRM
Ga0310892_103836321	3300031858	Soil	GGESAVHMHGFVFDREAIGKLVLSLSKFANEDHGVITRSDPAGDIRMTVDFSHVIPPTDLKV
Ga0306925_117144781	3300031890	Soil	DAVIDHMIKGGESVVHMQGFVFDREVIGKLILSLRKFINEDHGVITRSDPAGDIRMTVDFSHVIPPTDLNI
Ga0310912_104266662	3300031941	Soil	MQGFVFDREVIGKLVLSLWKFVNEDHGVITRSDPAADIRMTVDFSHVIPPTDLNI
Ga0307471_1027685262	3300032180	Hardwood Forest Soil	KGGESVVHMQGFVFDREVVGKLVLSLWKFVNEDHGVITRSDPAGDIRMTVDFSNVIPPTELNI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F048973

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences