Metagenome / Metatranscriptome Family F049122

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F049122
Family Type	Metagenome / Metatranscriptome
Number of Sequences	147
Average Sequence Length	40 residues
Representative Sequence	MISITRNHAVRKGQSGQFTCGITPSTGKWSAPAANEVAP
Number of Associated Samples	104
Number of Associated Scaffolds	147

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	78.91 %
% of genes near scaffold ends (potentially truncated)	25.17 %
% of genes from short scaffolds (< 2000 bps)	77.55 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.13

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (57.143 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (27.891 % of family members)
Environment Ontology (ENVO)	Unclassified (31.293 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.503 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.13
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.13
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 147 Family Scaffolds
PF13560	HTH_31	21.77
PF04149	DUF397	6.80
PF00221	Lyase_aromatic	3.40
PF12730	ABC2_membrane_4	0.68
PF13701	DDE_Tnp_1_4	0.68
PF01315	Ald_Xan_dh_C	0.68
PF13520	AA_permease_2	0.68
PF02403	Seryl_tRNA_N	0.68
PF03734	YkuD	0.68

COG ID	Name	Functional Category	% Frequency in 147 Family Scaffolds
COG2986	Histidine ammonia-lyase	Amino acid transport and metabolism [E]	3.40
COG0172	Seryl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.68
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.68
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.68

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.14 %
All Organisms	root	All Organisms	42.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.14 %
cellular organisms	root	All Organisms → cellular organisms	42.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.14 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	42.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.14 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	40.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.14 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	40.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.14 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	35.37 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.14 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	14.97 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	6.80 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.68 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.14 %
unclassified Pseudonocardiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales	14.29 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6.80 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.68 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.68 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.14 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	14.29 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6.80 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.68 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.68 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.68 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559005\|cont_contig15735	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1357	Open in IMG/M
3300004267\|Ga0066396_10042718	Not Available	703	Open in IMG/M
3300004479\|Ga0062595_100004409	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3890	Open in IMG/M
3300004633\|Ga0066395_10135470	All Organisms → cellular organisms → Bacteria	1232	Open in IMG/M
3300005175\|Ga0066673_10548564	Not Available	677	Open in IMG/M
3300005332\|Ga0066388_100131615	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3047	Open in IMG/M
3300005332\|Ga0066388_100467286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1901	Open in IMG/M
3300005332\|Ga0066388_105294261	Not Available	654	Open in IMG/M
3300005332\|Ga0066388_108144966	Not Available	523	Open in IMG/M
3300005332\|Ga0066388_108144970	Not Available	523	Open in IMG/M
3300005434\|Ga0070709_10000840	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	17199	Open in IMG/M
3300005435\|Ga0070714_100055126	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3397	Open in IMG/M
3300005435\|Ga0070714_100604019	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1054	Open in IMG/M
3300005439\|Ga0070711_100166545	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1676	Open in IMG/M
3300005445\|Ga0070708_100183407	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1956	Open in IMG/M
3300005445\|Ga0070708_101560353	Not Available	615	Open in IMG/M
3300005537\|Ga0070730_10006732	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	9807	Open in IMG/M
3300005537\|Ga0070730_10031561	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	3994	Open in IMG/M
3300005540\|Ga0066697_10564134	Not Available	636	Open in IMG/M
3300005541\|Ga0070733_10634118	Not Available	717	Open in IMG/M
3300005556\|Ga0066707_10517665	Not Available	773	Open in IMG/M
3300005568\|Ga0066703_10224048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1143	Open in IMG/M
3300005587\|Ga0066654_10847065	Not Available	522	Open in IMG/M
3300005598\|Ga0066706_10636141	Not Available	847	Open in IMG/M
3300005764\|Ga0066903_100061500	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4698	Open in IMG/M
3300005764\|Ga0066903_100129280	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3545	Open in IMG/M
3300005764\|Ga0066903_100249551	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2736	Open in IMG/M
3300005764\|Ga0066903_100270690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2649	Open in IMG/M
3300005764\|Ga0066903_102513958	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	997	Open in IMG/M
3300005764\|Ga0066903_103032031	Not Available	910	Open in IMG/M
3300005764\|Ga0066903_103781542	Not Available	813	Open in IMG/M
3300005764\|Ga0066903_104399357	Not Available	752	Open in IMG/M
3300005764\|Ga0066903_105027026	Not Available	701	Open in IMG/M
3300005764\|Ga0066903_106838232	Not Available	592	Open in IMG/M
3300005764\|Ga0066903_107499610	Not Available	563	Open in IMG/M
3300005764\|Ga0066903_108890908	Not Available	509	Open in IMG/M
3300006028\|Ga0070717_10687110	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	930	Open in IMG/M
3300006176\|Ga0070765_100096596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2543	Open in IMG/M
3300006755\|Ga0079222_10225940	Not Available	1152	Open in IMG/M
3300006755\|Ga0079222_11380088	Not Available	650	Open in IMG/M
3300006791\|Ga0066653_10116366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1246	Open in IMG/M
3300006804\|Ga0079221_10037059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2108	Open in IMG/M
3300006804\|Ga0079221_10045446	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1943	Open in IMG/M
3300006804\|Ga0079221_10065703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1677	Open in IMG/M
3300006806\|Ga0079220_10036962	All Organisms → cellular organisms → Bacteria	2211	Open in IMG/M
3300006893\|Ga0073928_10287367	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1240	Open in IMG/M
3300006904\|Ga0075424_100715662	Not Available	1069	Open in IMG/M
3300006914\|Ga0075436_100778141	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300009089\|Ga0099828_10072832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2913	Open in IMG/M
3300009090\|Ga0099827_10053021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3059	Open in IMG/M
3300010043\|Ga0126380_10159599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1457	Open in IMG/M
3300010046\|Ga0126384_10549041	Not Available	1004	Open in IMG/M
3300010048\|Ga0126373_11926550	Not Available	654	Open in IMG/M
3300010358\|Ga0126370_10074310	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2259	Open in IMG/M
3300010358\|Ga0126370_10149041	Not Available	1702	Open in IMG/M
3300010360\|Ga0126372_10708152	Not Available	984	Open in IMG/M
3300010361\|Ga0126378_10056019	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3703	Open in IMG/M
3300010361\|Ga0126378_10104186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	2807	Open in IMG/M
3300010361\|Ga0126378_10653581	Not Available	1164	Open in IMG/M
3300010366\|Ga0126379_13780931	Not Available	507	Open in IMG/M
3300010376\|Ga0126381_100172088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	2868	Open in IMG/M
3300010376\|Ga0126381_100253047	Not Available	2388	Open in IMG/M
3300010376\|Ga0126381_100904232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1271	Open in IMG/M
3300010379\|Ga0136449_100869164	Not Available	1476	Open in IMG/M
3300010398\|Ga0126383_12530052	Not Available	597	Open in IMG/M
3300010398\|Ga0126383_13138370	Not Available	540	Open in IMG/M
3300010880\|Ga0126350_10257929	Not Available	718	Open in IMG/M
3300010937\|Ga0137776_1217691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4611	Open in IMG/M
3300010937\|Ga0137776_1379241	Not Available	2873	Open in IMG/M
3300011120\|Ga0150983_12445418	Not Available	798	Open in IMG/M
3300011120\|Ga0150983_12807649	Not Available	912	Open in IMG/M
3300011120\|Ga0150983_14606135	Not Available	582	Open in IMG/M
3300011270\|Ga0137391_10370057	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1229	Open in IMG/M
3300012199\|Ga0137383_10869805	Not Available	658	Open in IMG/M
3300012205\|Ga0137362_10787935	Not Available	815	Open in IMG/M
3300012208\|Ga0137376_10925626	Not Available	748	Open in IMG/M
3300012357\|Ga0137384_10056552	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3249	Open in IMG/M
3300012363\|Ga0137390_10445748	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1271	Open in IMG/M
3300016319\|Ga0182033_10676046	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	902	Open in IMG/M
3300016387\|Ga0182040_11577232	Not Available	559	Open in IMG/M
3300018431\|Ga0066655_10109922	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1562	Open in IMG/M
3300020199\|Ga0179592_10018554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3074	Open in IMG/M
3300020582\|Ga0210395_10012209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6377	Open in IMG/M
3300020582\|Ga0210395_10317108	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1172	Open in IMG/M
3300021171\|Ga0210405_10173295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1710	Open in IMG/M
3300021171\|Ga0210405_10315014	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1236	Open in IMG/M
3300021171\|Ga0210405_11079604	Not Available	601	Open in IMG/M
3300021180\|Ga0210396_10247870	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1584	Open in IMG/M
3300021420\|Ga0210394_10369097	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1262	Open in IMG/M
3300021432\|Ga0210384_10236820	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1643	Open in IMG/M
3300021478\|Ga0210402_10698139	Not Available	937	Open in IMG/M
3300021478\|Ga0210402_10844385	Not Available	842	Open in IMG/M
3300021559\|Ga0210409_10517169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1058	Open in IMG/M
3300021559\|Ga0210409_11129557	Not Available	659	Open in IMG/M
3300021560\|Ga0126371_10522673	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1335	Open in IMG/M
3300021560\|Ga0126371_11140654	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	918	Open in IMG/M
3300021560\|Ga0126371_12185952	Not Available	667	Open in IMG/M
3300022722\|Ga0242657_1082004	Not Available	767	Open in IMG/M
3300025898\|Ga0207692_10387236	Not Available	869	Open in IMG/M
3300025898\|Ga0207692_11195236	Not Available	505	Open in IMG/M
3300025910\|Ga0207684_10000653	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	40961	Open in IMG/M
3300025915\|Ga0207693_10096733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2315	Open in IMG/M
3300025922\|Ga0207646_10000058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	158096	Open in IMG/M
3300027725\|Ga0209178_1412718	Not Available	515	Open in IMG/M
3300027765\|Ga0209073_10062212	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1250	Open in IMG/M
3300027857\|Ga0209166_10000527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	41337	Open in IMG/M
3300027857\|Ga0209166_10077030	Not Available	1890	Open in IMG/M
3300027882\|Ga0209590_10051965	Not Available	2288	Open in IMG/M
3300027894\|Ga0209068_10924679	Not Available	517	Open in IMG/M
3300027903\|Ga0209488_10341236	Not Available	1115	Open in IMG/M
3300030602\|Ga0210254_10417854	Not Available	593	Open in IMG/M
3300030738\|Ga0265462_10752932	Not Available	783	Open in IMG/M
3300030973\|Ga0075395_11051948	Not Available	693	Open in IMG/M
3300031057\|Ga0170834_108152563	Not Available	601	Open in IMG/M
3300031231\|Ga0170824_114566366	Not Available	601	Open in IMG/M
3300031543\|Ga0318516_10010335	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4485	Open in IMG/M
3300031543\|Ga0318516_10185326	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1199	Open in IMG/M
3300031544\|Ga0318534_10002750	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7680	Open in IMG/M
3300031545\|Ga0318541_10846253	Not Available	510	Open in IMG/M
3300031549\|Ga0318571_10239935	Not Available	663	Open in IMG/M
3300031564\|Ga0318573_10585554	Not Available	601	Open in IMG/M
3300031668\|Ga0318542_10458350	Not Available	661	Open in IMG/M
3300031679\|Ga0318561_10800216	Not Available	518	Open in IMG/M
3300031708\|Ga0310686_102968307	Not Available	531	Open in IMG/M
3300031724\|Ga0318500_10436858	Not Available	654	Open in IMG/M
3300031744\|Ga0306918_10630950	Not Available	840	Open in IMG/M
3300031747\|Ga0318502_10954987	Not Available	522	Open in IMG/M
3300031748\|Ga0318492_10461109	Not Available	672	Open in IMG/M
3300031765\|Ga0318554_10262863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	983	Open in IMG/M
3300031770\|Ga0318521_10506079	Not Available	726	Open in IMG/M
3300031770\|Ga0318521_10877804	Not Available	548	Open in IMG/M
3300031771\|Ga0318546_10600169	Not Available	774	Open in IMG/M
3300031779\|Ga0318566_10490950	Not Available	602	Open in IMG/M
3300031795\|Ga0318557_10260391	Not Available	795	Open in IMG/M
3300031860\|Ga0318495_10192317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	919	Open in IMG/M
3300031879\|Ga0306919_10780284	Not Available	735	Open in IMG/M
3300031896\|Ga0318551_10086792	Not Available	1647	Open in IMG/M
3300031896\|Ga0318551_10644387	Not Available	612	Open in IMG/M
3300031942\|Ga0310916_11479796	Not Available	554	Open in IMG/M
3300032001\|Ga0306922_10551713	Not Available	1225	Open in IMG/M
3300032009\|Ga0318563_10001043	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	11641	Open in IMG/M
3300032059\|Ga0318533_10749099	Not Available	717	Open in IMG/M
3300032160\|Ga0311301_11757069	Not Available	742	Open in IMG/M
3300032205\|Ga0307472_100986765	Not Available	788	Open in IMG/M
3300032261\|Ga0306920_103708238	Not Available	560	Open in IMG/M
3300033290\|Ga0318519_10558152	Not Available	693	Open in IMG/M
3300033290\|Ga0318519_10710232	Not Available	615	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.96%
Host-Associated	Host-Associated	1.36%
Engineered	Engineered	0.68%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.24%
Aquatic	Environmental → Aquatic	2.72%
Plants	Host-Associated → Plants	1.36%
Modeled	Engineered → Modeled	0.68%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.24%
Thermal Springs	Environmental → Aquatic → Thermal Springs	2.04%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.36%
Sediment	Environmental → Aquatic → Sediment	0.68%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.68%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	70.75%
Loam	Environmental → Terrestrial → Soil → Loam	24.49%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	2.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.36%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.68%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.68%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	34.01%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	15.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.16%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.12%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.76%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment	1.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.36%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.68%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.68%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.68%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	27.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	12.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	12.24%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.48%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	5.44%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.08%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.08%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.40%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.04%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment	1.36%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.36%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.36%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.36%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.36%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.68%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.68%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.68%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.68%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.68%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.68%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.68%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.68%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010937	Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300030602	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO133-ANR018SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030738	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VDE Co-assembly	Environmental	Open in IMG/M
3300030973	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB6 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
cont_0735.00001450	2166559005	Simulated	MIHITLNDARCNSLTGRFTCGITPSMGKWSAPAANEVAP
Ga0066396_100427181	3300004267	Tropical Forest Soil	MTNTTLNDVRCKGPVGRFTCGIAPGAGKWSAPAANEVAP*
Ga0062595_1000044096	3300004479	Soil	MISIALIHAVCKGQTAHFACGLTPNKGKWSSPAANEVAP*
Ga0066395_101354704	3300004633	Tropical Forest Soil	MINITLNGARRKGPTGRFTCGITPNLGKWAAPAANEVAR*
Ga0066673_105485641	3300005175	Soil	DLIMISITLNGARRKGPMGRFTCGITTNIGKWPAPAANEVAR*
Ga0066388_1001316151	3300005332	Tropical Forest Soil	MIHVTPNDARRNSLTSRLTCGITPSAGKWSAPAANEVAP*
Ga0066388_1004672863	3300005332	Tropical Forest Soil	MISIALIHAVRKGQARHFACGITPTRGKWSAPAANEVAP*
Ga0066388_1052942612	3300005332	Tropical Forest Soil	RQPSGKPSSSPEPTDQGDLVVISIVFIKAVRKGQNGHFSGGITPDSGKWSAPAANEVAP*
Ga0066388_1081449661	3300005332	Tropical Forest Soil	EPTDQGDLVMISIALNNSVRKGQTGQFACGITPSVGKWSAPAANEVAP*
Ga0066388_1081449701	3300005332	Tropical Forest Soil	EPTDQGDLVMISIALNNSVRKGQTGQFACGITPSVGKWSGPAANEVAP*
Ga0070709_100008407	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MISITLNGARRKGPRGRFTCGITPSIGKWAAPAAKEVAR*
Ga0070714_1000551261	3300005435	Agricultural Soil	MISITLNGARRKGHTGRFTCGITLGIGKWAAPAANEVAQ*
Ga0070714_1006040194	3300005435	Agricultural Soil	MIHITLNDARCNSLTGRFTCGIAPSMGKWSTPAANEVAP*
Ga0070711_1001665452	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MIIIVLINAVRKGQNGHFPDGITPDSGKWSSPAANEVAP*
Ga0070708_1001834072	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MISITANGARRKGHTGRFTCGITLGIGKWAAPAANEVAQ*
Ga0070708_1015603531	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MIHITLNNARCNSLTGRFTCGIAPSMGKWSTPAANEVAP*
Ga0070730_100067321	3300005537	Surface Soil	MIHITLNDARRKVPAGRSTCGITPKAEKWSAPAANEVAP*
Ga0070730_100315614	3300005537	Surface Soil	MIHITLNHAPCKGLTGRFTRGTTPNTGKWSAPAANEVAL*
Ga0066697_105641341	3300005540	Soil	TEQGDLIMISITLNGARRKGPMGRFTCGITTNIGKWPAPAANEVAR*
Ga0070733_106341182	3300005541	Surface Soil	MIIITLNHAVCKGQSGHFTCGITPHVGKWSAPAANEVAP*
Ga0066707_105176652	3300005556	Soil	MINITLNGARRKGPTGRFTCGITPNIGKWAAPPAKEVAR*
Ga0066703_102240482	3300005568	Soil	MISITRNHAVCKGLSGHFTCGITPDTGKWSAPAANEVAP*
Ga0066654_108470653	3300005587	Soil	MISITLNGARRKGPMGRFTCGITTNIGKWPAPAANEV
Ga0066706_106361412	3300005598	Soil	MISITLNGARRKGPMGRFTCGITTNIGKWPAPAANEVAR*
Ga0066903_1000615004	3300005764	Tropical Forest Soil	MTNTTLNDVRCKGPVGRFTCGIAPGAGKWSAAAANEVAP*
Ga0066903_1001292803	3300005764	Tropical Forest Soil	MISIALIHAVRKGQARHFACGITPTKGKWSAPAANEVAP*
Ga0066903_1002495513	3300005764	Tropical Forest Soil	MISIVFINAVRKGQTRHFAGGITPGSGKWSAPAANEVAP*
Ga0066903_1002706904	3300005764	Tropical Forest Soil	MIIIAPNHAVRKGQTGQFACGITPSVGKWSAPAANEVAP*
Ga0066903_1025139584	3300005764	Tropical Forest Soil	MINITLNGARRKGPTGRFTCGITPNLGKWAAPAASEVAR*
Ga0066903_1030320313	3300005764	Tropical Forest Soil	MIHVTLNHARCKRPMGRFTCGITPLAGKWSAPHANEVAP*
Ga0066903_1037815422	3300005764	Tropical Forest Soil	MISIALINAVRKGQTRHFAGGITPASGKWSAPAANEVAP*
Ga0066903_1043993572	3300005764	Tropical Forest Soil	MINVTLNGARRKGPAGRFTCGITPNLGKWAAPAANEVAR*
Ga0066903_1050270263	3300005764	Tropical Forest Soil	PSSSPEPTDQGDLVVISIVFIKAVRKGQNGHFSGGITPDSGKWASPAANEAAP*
Ga0066903_1068382322	3300005764	Tropical Forest Soil	MINITLNGARRKGPAGRFTCGITPNIGKWAAPAANEVAR*
Ga0066903_1074996101	3300005764	Tropical Forest Soil	MIYITLNDARCKGLTGRFTCGIIPSAGKWSAPAANEAAP*
Ga0066903_1088909082	3300005764	Tropical Forest Soil	VQGDLVMINITLNGARRKGPTGRFTCGITPNIGKWAAPAASEVTR*
Ga0070717_106871102	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MISITLMHAVRKGQGGHFTCGITLDKWSAPAANEVAQ*
Ga0070765_1000965964	3300006176	Soil	MISITLNHAACKGQSSHFTCGIAPNTGKWSAPAANEVAP*
Ga0079222_102259403	3300006755	Agricultural Soil	MINITLNGARRKGPTGRFTCGITPNIGKWAAPAAKEVAR*
Ga0079222_113800882	3300006755	Agricultural Soil	MIIIALINAVRKGQNGHFPDGITPDSGKWSSPAANEVAP*
Ga0066653_101163662	3300006791	Soil	MISITLNGARRKGPMGRFTCGITTNIGKWAAPAANEVAR*
Ga0079221_100370593	3300006804	Agricultural Soil	MINITLNGARRKGPTGRFTCGITSNIGKWAAPAANEVAR*
Ga0079221_100454464	3300006804	Agricultural Soil	MISIALIHAVCKGQTAHFACGITPNKGKWSSPAANEVAP*
Ga0079221_100657034	3300006804	Agricultural Soil	MIRIALNGARRKGPTGRFTCGITTNIGKSPAPAAGEVAR*
Ga0079220_100369623	3300006806	Agricultural Soil	MINITLNGARRKGPMGRFTCGITPNIGKWAAPAAKEVAR*
Ga0073928_102873672	3300006893	Iron-Sulfur Acid Spring	MISITRNHAVRKGQSGQFTCGITPSTGKWSAPAANEVAP*
Ga0075424_1007156622	3300006904	Populus Rhizosphere	MIHITLNDARCNSLASLFTCGITPSAGKWSAPAANEVAP*
Ga0075436_1007781413	3300006914	Populus Rhizosphere	DLAMINITLNGARRKGPTGRFTCGITPNIGKWAAPAAKEVAR*
Ga0099828_100728321	3300009089	Vadose Zone Soil	MIHITLNGARCKSPMGHFTCGITPSMGKWSAPAANEVAP*
Ga0099827_100530214	3300009090	Vadose Zone Soil	MISITLNHAVCKGQSSHFTCGITPDMGKWSAPAANEVAQ*
Ga0126380_101595992	3300010043	Tropical Forest Soil	MISIAFINGVRKSQNGHFSGGITPDSGKWSAPAANEVAP*
Ga0126384_105490413	3300010046	Tropical Forest Soil	MISIALISAVRKGQTGHFTRGITRSSGKWSAPAANEVAP*
Ga0126373_119265503	3300010048	Tropical Forest Soil	ISIALIHAVRKGQARHFACGITPTKGKWSAPAANEVAP*
Ga0126370_100743104	3300010358	Tropical Forest Soil	MINITLNGARRKGPTGRFTCGITPNVGQWAAPAAKEVADDHPRSGHR
Ga0126370_101490412	3300010358	Tropical Forest Soil	MISIALNNSVRKGQTGQFACGITPSVGKWSAPAANEVAP*
Ga0126372_107081521	3300010360	Tropical Forest Soil	MISIALNNSVRKGQTGQFACGITPSVGKWSGPAANEVAP*
Ga0126378_100560195	3300010361	Tropical Forest Soil	MINITLNGARRKGPTGRFTCGITPNIGKWAAPAAREVAR*
Ga0126378_101041865	3300010361	Tropical Forest Soil	VINITLNGARCKGPTGRFTCGITPNIGKWAAPAANEVAP*
Ga0126378_106535811	3300010361	Tropical Forest Soil	MISIALIRAVRKGQTGHFTRGITRSSGKWSAPAANEVAP*
Ga0126379_137809311	3300010366	Tropical Forest Soil	MISIAFINGVRKSQNGHFSGGITPDSGKWSAPAANEVA
Ga0126381_1001720885	3300010376	Tropical Forest Soil	MINITLNGARRKGPTGRFTCGITPNIGKWAAPAANEVAP*
Ga0126381_1002530472	3300010376	Tropical Forest Soil	MISIALINAVRKGQTRHFAGGITPESGKWSAPAANEVAP*
Ga0126381_1009042322	3300010376	Tropical Forest Soil	MISIALINAVRKGQTRHFAGGITPHSGKWSAPAANEVAP*
Ga0136449_1008691644	3300010379	Peatlands Soil	MIRIALNGARRKGHTAHFTCGITPTMGKWPAPAANGVAQ*
Ga0126383_125300522	3300010398	Tropical Forest Soil	MISIALIHAVCKGQTAHFACGIAPNKGKWSAPAANEVAP*
Ga0126383_131383701	3300010398	Tropical Forest Soil	MISIAFIGAVRKGQTGHFARGITRNSGKWSAPAANEMAP*
Ga0126350_102579291	3300010880	Boreal Forest Soil	MISITLNHAACKGQTSHFTCGIAPNTGKWSAPAANEVAP*
Ga0137776_12176911	3300010937	Sediment	MISITLNGARRKGPKGRFTCGITRDIERWAAAAKEVAR*
Ga0137776_13792414	3300010937	Sediment	MIIITLNRARRKGHMGRFTCGIIPGIGKWAAPAANQVAQ*
Ga0150983_124454182	3300011120	Forest Soil	MISIALNGARRKGHTGRFTCGITLGIGKWAAPAANEVAQ*
Ga0150983_128076491	3300011120	Forest Soil	MISITRNHAVRKGQNGQFTCGITSTNGKWSAPAANEVAP*
Ga0150983_146061351	3300011120	Forest Soil	MIRIALNGARRKGHRAHFTCGITPNMGKWPAPAANEVAQ*
Ga0137391_103700572	3300011270	Vadose Zone Soil	MMSITLNHAVCTGQTSHFTCGIAPNTGKWAAPAANEVAP*
Ga0137383_108698052	3300012199	Vadose Zone Soil	MISIILNHAVCKGQSGHFTCGITPNTGKWSAPAANEVAQ*
Ga0137362_107879351	3300012205	Vadose Zone Soil	MMTITLKHAVCKGQTSHFTRGIARNTGKWAAPAANEVAP*
Ga0137376_109256261	3300012208	Vadose Zone Soil	GDLVMIHITLNDARCNSLTGRFTCGITSRMGKWSAPAANEVAP*
Ga0137384_100565521	3300012357	Vadose Zone Soil	MISITRNNAVCKGQSRHFTCGTTPGTGKWSATAANEVAQ*
Ga0137390_104457484	3300012363	Vadose Zone Soil	MMTITLNHAVCTGQTSHFTCGIAPNTGKWAAPAANEVAP*
Ga0182033_106760461	3300016319	Soil	MISIALINAVRKGQTRHFAGGITPASGKWSAPAANE
Ga0182040_115772321	3300016387	Soil	SIALINAVRKGQTRHFAGGITPASGKWSAPAANEVAP
Ga0066655_101099224	3300018431	Grasslands Soil	MISITLNGARRKGPMGRFTCGITTNIGKWPAPAANEVAR
Ga0179592_100185544	3300020199	Vadose Zone Soil	MMTITLNHAVCKGQTSHFTRGIARNTGKWAAPAANEVAP
Ga0210395_100122095	3300020582	Soil	MISITRNHAVRKGQNGQFTCGITSTNGKWSAPAANEVAP
Ga0210395_103171084	3300020582	Soil	TKLPTARTDQGDLVMISITRNHAVRKGQSGQFTCGITPSTGKWSAPAANEVAP
Ga0210405_101732952	3300021171	Soil	MISITLNHAACKGQSSHFTCGIAPNTGKWSAPAANEVAP
Ga0210405_103150142	3300021171	Soil	MISITRNHAVRKGQSGQFTCGITPITGKWSAPAANEVAP
Ga0210405_110796043	3300021171	Soil	ITRNHAVRKGQSGQFTCGITPITGKWSAPAANEVAP
Ga0210396_102478702	3300021180	Soil	MISITRNHAVRKGQSGQFTCGITPSTGKWSAPAANEVAP
Ga0210394_103690971	3300021420	Soil	MISITRNHAGRKGQSGQFTCGITLTTGKWSAPAANEVAP
Ga0210384_102368203	3300021432	Soil	MIHITLNYGRCKSPTGCFTCGIDPDTGKWSAPAANEVAP
Ga0210402_106981394	3300021478	Soil	MISITLNHAVCKGQSSHSTCGITPGMGKWSAPAANEVAP
Ga0210402_108443851	3300021478	Soil	MIHITLNDARCNNLTDRFTCGINPSMGKWSAPAANEVAP
Ga0210409_105171691	3300021559	Soil	MISITLNHAACKGQSSHFTCGIAPNTGKWSAPAANEVA
Ga0210409_111295571	3300021559	Soil	TDQGDLVMISITLNHAACKGQSSHFTCGIAPNTGKWSAPAANEVAP
Ga0126371_105226732	3300021560	Tropical Forest Soil	MIHVTPNHARCKRPMGRFTCGITPITGKWSAPHANEVAP
Ga0126371_111406541	3300021560	Tropical Forest Soil	PSGKPSSSPEPTDQGDLVMISIALIHAVRKGQARHFACGITPTKGKWSAPAANEVAP
Ga0126371_121859522	3300021560	Tropical Forest Soil	MISIALINAVRKGQTGHFAGGITPGSGKWSAPAANEVAP
Ga0242657_10820041	3300022722	Soil	MSITLNHAACKGQTSHFTRGIAPSTGKWAAPAANEVAP
Ga0207692_103872362	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MISIAPIHAVCKGQTAHFACGITPSKGKWSSPAANEAAP
Ga0207692_111952362	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	TDQGDLVIMSITLNHAACKGQTSHFTCGIAPSTGKWAAPAANEVAP
Ga0207684_1000065313	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MISITLIHAVRKGQSGHFTCGITLDKWSAPAASEVAQ
Ga0207693_100967335	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MIIIVLINAVRKGQNGHFPDGITPDSGKWSSPAANEVAP
Ga0207646_1000005810	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MISIALIHAVRKGQSGHFTCGITLDKWSAPAASEVAQ
Ga0209178_14127182	3300027725	Agricultural Soil	MIIIALINAVRKGQNGHFPDGITPDSGKWSSPAANEVAP
Ga0209073_100622122	3300027765	Agricultural Soil	MISIALIHAVCKGQTAHFACGITPNKGKWSSPAANEVAP
Ga0209166_1000052730	3300027857	Surface Soil	MIHITLNDARRKVPAGRSTCGITPKAEKWSAPAANEVAP
Ga0209166_100770301	3300027857	Surface Soil	MIHITLNHAPCKGLTGRFTRGTTPNTGKWSAPAANEVAL
Ga0209590_100519654	3300027882	Vadose Zone Soil	MISITLNHAVCKGQSSHFTCGITPDMGKWSAPAANEVAQ
Ga0209068_109246791	3300027894	Watersheds	MIRIALNGARRKGPTGRFTCGIIPGIGKGSALAANEVAR
Ga0209488_103412361	3300027903	Vadose Zone Soil	MIHITLNGARCKSPMGHFTCGITPSMGKWSAPAANEVAP
Ga0210254_104178541	3300030602	Soil	MISITRNHAVRKGQSGQFTCGITPTTGKWSAPAANEVAP
Ga0265462_107529322	3300030738	Soil	MIRIALNGARRKGRTGHFTCGITPNTGKWAALAANEVAQ
Ga0075395_110519482	3300030973	Soil	MIHITLNDARCNSLTGRFTCGITPRMGKWSAPAANEVAP
Ga0170834_1081525631	3300031057	Forest Soil	MISITLNHTVCKGQSSHSTRGITPSMGKWSAPAANEVAP
Ga0170824_1145663661	3300031231	Forest Soil	MISITLNHTVCKGQSSHSTCGITPDMGKWSAPAANEVAP
Ga0318516_100103355	3300031543	Soil	MINITLNGARRKGPTGRFTCGITPNIGKWAAPAASEVAR
Ga0318516_101853262	3300031543	Soil	MIYITLNDARCKGLTGRFTCGIIPHVGKWSAPAANEVAP
Ga0318534_100027504	3300031544	Soil	MINITLNGARRKGPTGRFTCGITPNIGKWAAPAASEVTR
Ga0318541_108462531	3300031545	Soil	MISIALINAVRKGQTRHFAGGITPASGKWSAPAANEVAP
Ga0318571_102399351	3300031549	Soil	ITLKRARCKGPAGRFTCGITANIKKWAATAVNEVAR
Ga0318573_105855541	3300031564	Soil	MIHITRNDARCKGLTGRFTCGIIPSVGKWSAPAANEVAP
Ga0318542_104583501	3300031668	Soil	MISIALINAVRKGQTRHFAGGINPDSGKWSAPAANEVAP
Ga0318561_108002161	3300031679	Soil	TLNDARCKGLTGRFTCGIIPHVGKWSAPAANEVAP
Ga0310686_1029683072	3300031708	Soil	MIRIALNGARRKGHTGHFTCGITPRMGKWPAPAANEVAR
Ga0318500_104368583	3300031724	Soil	MISIALINAVRKGQTGHFAGGITPGSGKWSAPAANELAP
Ga0306918_106309503	3300031744	Soil	MISIAPNHAVRKGQTGHFAGEITPSQGKWSAPAANEVTP
Ga0318502_109549871	3300031747	Soil	LVMISIALINAVRKGQTGHFVGGITPGSGKWSAPAANELAP
Ga0318492_104611092	3300031748	Soil	MISIAPNHAVRKGQTGHFAGEITPSQGKWSAPAANEVAP
Ga0318554_102628634	3300031765	Soil	PTDQGDLVMISIALINAVRKGQTGHFAGGITPGSGKWSAPAANELAP
Ga0318521_105060793	3300031770	Soil	PTDQGDLVMISIAPNHAVRKGQTGHFAGEITPSQGKWSAPAANEVAP
Ga0318521_108778041	3300031770	Soil	VFINAVRKGQTRHFASGITPGSGKWSAPAANEVAP
Ga0318546_106001691	3300031771	Soil	MISIVFINAVRKGQTRHFASGITPGSGKWSAPAANELAP
Ga0318566_104909502	3300031779	Soil	KPSSSPEPTDQGDLVMISIAPNHAVRKGQTGHFAGEITPSQGKWSAPAANEVAP
Ga0318557_102603914	3300031795	Soil	IALISAVRKGQTRHFAGGINPASGKWSAPAANEVAP
Ga0318495_101923174	3300031860	Soil	EPTDQGNLVMISIAPNHAVRKGQTGHFAGEIAPSQGKWSAPAANEVAP
Ga0306919_107802842	3300031879	Soil	MISIALINAVRKGQTRHFAGGINPASGKWSAPAANEVAP
Ga0318551_100867925	3300031896	Soil	DQGDLVMISIAPNHAVRKGQTGHFAGEITPSQGKWSAPAANEVAP
Ga0318551_106443873	3300031896	Soil	IALINAVRKGQTGHFAGGITPGSGKWSAPAANELAP
Ga0310916_114797961	3300031942	Soil	PSGKPSSSPEPTDQGDLVMISIAPNHAVRKGQTGHFAGEITPSQGKWSAPAANEVAP
Ga0306922_105517133	3300032001	Soil	MISIAPNHAVRKGQTGHFAGEIAPSQGKWSAPAANEVAP
Ga0318563_1000104310	3300032009	Soil	MINITLNGARRKGPTGRFTCGITPNIGKWAAPAAREVTR
Ga0318533_107490991	3300032059	Soil	PSGKPSSSPEPTDQGDLVMISIALINAVRKGQTRHFAGGINPASGKWSAPAANEVAP
Ga0311301_117570692	3300032160	Peatlands Soil	MIRIALNGARRKGHTAHFTCGITPTMGKWPAPAANGVAQ
Ga0307472_1009867652	3300032205	Hardwood Forest Soil	MIHITLNDARCNSLTGRFTCGITPRMGKWSTPAANEVAP
Ga0306920_1037082381	3300032261	Soil	GKPRSSPEPTDQGDLVMLSIALINAVRKGQTGHFAGGITPGSGKWSAPAANELAP
Ga0318519_105581523	3300033290	Soil	ISIAPNHAVRKGQTGHFAGEITPSQGKWSAPAANEVAP
Ga0318519_107102321	3300033290	Soil	MISIVFINAVRKGQTRHFASGITPGSGEWSAPAANELAP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F049122

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences