Metagenome / Metatranscriptome Family F050199

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F050199
Family Type	Metagenome / Metatranscriptome
Number of Sequences	145
Average Sequence Length	66 residues
Representative Sequence	MPWVRLSTWSDMRARNERVEALLEQWDSDVAAARSDPCKFSSVFEVLGTCAGELHEALDGGCDDED
Number of Associated Samples	117
Number of Associated Scaffolds	145

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	75.00 %
% of genes near scaffold ends (potentially truncated)	40.00 %
% of genes from short scaffolds (< 2000 bps)	86.90 %
Associated GOLD sequencing projects	108
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (68.276 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (36.552 % of family members)
Environment Ontology (ENVO)	Unclassified (34.483 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (44.828 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.38% β-sheet: 0.00% Coil/Unstructured: 43.62%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 145 Family Scaffolds
PF00583	Acetyltransf_1	4.14
PF00589	Phage_integrase	2.07
PF00248	Aldo_ket_red	2.07
PF01370	Epimerase	2.07
PF00561	Abhydrolase_1	2.07
PF04101	Glyco_tran_28_C	1.38
PF01569	PAP2	1.38
PF07690	MFS_1	1.38
PF13088	BNR_2	0.69
PF02909	TetR_C_1	0.69
PF01979	Amidohydro_1	0.69
PF03649	UPF0014	0.69
PF03860	DUF326	0.69
PF00872	Transposase_mut	0.69
PF02517	Rce1-like	0.69
PF01872	RibD_C	0.69
PF02518	HATPase_c	0.69
PF04185	Phosphoesterase	0.69
PF06803	DUF1232	0.69

COG ID	Name	Functional Category	% Frequency in 145 Family Scaffolds
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.69
COG0390	ABC-type iron transport system FetAB, permease component	Inorganic ion transport and metabolism [P]	0.69
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	0.69
COG1309	DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA	Transcription [K]	0.69
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.69
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.69
COG3339	Uncharacterized membrane protein YkvA, DUF1232 family	Function unknown [S]	0.69
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.69
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	0.69

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.28 %
All Organisms	root	All Organisms	31.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.28 %
cellular organisms	root	All Organisms → cellular organisms	31.03 %
Viruses	superkingdom	All Organisms → Viruses	0.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.28 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	31.03 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.28 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	24.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.28 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	22.07 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.28 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	18.62 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.28 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	7.59 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	3.45 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	1.38 %
Actinopolysporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinopolysporales	0.69 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.28 %
Propionibacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae	4.14 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	1.38 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	1.38 %
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	1.38 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	1.38 %
Actinopolysporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinopolysporales → Actinopolysporaceae	0.69 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.69 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.28 %
Microlunatus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus	2.76 %
Friedmanniella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella	1.38 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	1.38 %
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	1.38 %
Microcella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microcella	0.69 %
Arthrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter	0.69 %
Actinopolyspora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinopolysporales → Actinopolysporaceae → Actinopolyspora	0.69 %
Citricoccus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Citricoccus	0.69 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.28 %
Microlunatus sagamiharensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus → Microlunatus sagamiharensis	2.07 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	1.38 %
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	1.38 %
Actinopolyspora mzabensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinopolysporales → Actinopolysporaceae → Actinopolyspora → Actinopolyspora mzabensis	0.69 %
Friedmanniella luteola	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella → Friedmanniella luteola	0.69 %
Microcella alkaliphila	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microcella → Microcella alkaliphila	0.69 %
unclassified Arthrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter	0.69 %
unclassified Citricoccus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Citricoccus → unclassified Citricoccus	0.69 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.28 %
Microlunatus sagamiharensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus → Microlunatus sagamiharensis	2.07 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	1.38 %
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	1.38 %
Arthrobacter sp. Hiyo8	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp. Hiyo8	0.69 %
Citricoccus sp. SGAir0253	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Citricoccus → unclassified Citricoccus → Citricoccus sp. SGAir0253	0.69 %
Actinopolyspora mzabensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinopolysporales → Actinopolysporaceae → Actinopolyspora → Actinopolyspora mzabensis	0.69 %
Friedmanniella luteola	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella → Friedmanniella luteola	0.69 %
Microcella alkaliphila	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microcella → Microcella alkaliphila	0.69 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.69 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c0502187	Not Available	531	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105382464	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1019	Open in IMG/M
3300000559\|F14TC_104914752	Not Available	623	Open in IMG/M
3300000787\|JGI11643J11755_11479212	Not Available	544	Open in IMG/M
3300000956\|JGI10216J12902_106667659	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	2069	Open in IMG/M
3300000956\|JGI10216J12902_121294242	Not Available	924	Open in IMG/M
3300002568\|C688J35102_119888833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus → Microlunatus sagamiharensis	804	Open in IMG/M
3300002899\|JGIcombinedJ43975_10049531	Not Available	708	Open in IMG/M
3300004114\|Ga0062593_100912297	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microcella → Microcella alkaliphila	889	Open in IMG/M
3300004156\|Ga0062589_100281415	Not Available	1271	Open in IMG/M
3300004157\|Ga0062590_100768258	Not Available	880	Open in IMG/M
3300004463\|Ga0063356_102879020	Not Available	741	Open in IMG/M
3300004479\|Ga0062595_100079289	All Organisms → cellular organisms → Bacteria	1653	Open in IMG/M
3300004479\|Ga0062595_100832657	Not Available	766	Open in IMG/M
3300004479\|Ga0062595_102593657	Not Available	508	Open in IMG/M
3300005168\|Ga0066809_10063075	Not Available	851	Open in IMG/M
3300005169\|Ga0066810_10055268	Not Available	787	Open in IMG/M
3300005334\|Ga0068869_100482979	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1032	Open in IMG/M
3300005347\|Ga0070668_100500744	Not Available	1051	Open in IMG/M
3300005354\|Ga0070675_102127336	Not Available	517	Open in IMG/M
3300005366\|Ga0070659_101453882	Not Available	610	Open in IMG/M
3300005441\|Ga0070700_100965547	Not Available	698	Open in IMG/M
3300005441\|Ga0070700_100999741	Not Available	687	Open in IMG/M
3300005459\|Ga0068867_100409602	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1146	Open in IMG/M
3300005615\|Ga0070702_100729256	Not Available	759	Open in IMG/M
3300005616\|Ga0068852_101440775	Not Available	711	Open in IMG/M
3300005937\|Ga0081455_10199670	All Organisms → cellular organisms → Bacteria	1498	Open in IMG/M
3300006058\|Ga0075432_10006315	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae	4029	Open in IMG/M
3300006853\|Ga0075420_101108910	Not Available	680	Open in IMG/M
3300006881\|Ga0068865_100818357	Not Available	805	Open in IMG/M
3300007076\|Ga0075435_100029847	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4283	Open in IMG/M
3300009098\|Ga0105245_11109906	Not Available	837	Open in IMG/M
3300009098\|Ga0105245_12318645	Not Available	590	Open in IMG/M
3300009147\|Ga0114129_12755508	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp. Hiyo8	585	Open in IMG/M
3300009176\|Ga0105242_10132257	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	2155	Open in IMG/M
3300009553\|Ga0105249_13322703	Not Available	517	Open in IMG/M
3300010042\|Ga0126314_10065845	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	2395	Open in IMG/M
3300010147\|Ga0126319_1202136	Not Available	1335	Open in IMG/M
3300010154\|Ga0127503_10603153	Not Available	624	Open in IMG/M
3300010371\|Ga0134125_12653567	Not Available	545	Open in IMG/M
3300010375\|Ga0105239_11197699	Not Available	875	Open in IMG/M
3300012212\|Ga0150985_111351488	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus	1188	Open in IMG/M
3300012212\|Ga0150985_118883273	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella	2067	Open in IMG/M
3300012491\|Ga0157329_1029860	Not Available	561	Open in IMG/M
3300012508\|Ga0157315_1023576	Not Available	670	Open in IMG/M
3300012915\|Ga0157302_10102121	Not Available	906	Open in IMG/M
3300012955\|Ga0164298_10067467	Not Available	1785	Open in IMG/M
3300012958\|Ga0164299_10012169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3256	Open in IMG/M
3300012958\|Ga0164299_10097997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1516	Open in IMG/M
3300012960\|Ga0164301_10798990	Not Available	721	Open in IMG/M
3300012961\|Ga0164302_11384175	Not Available	573	Open in IMG/M
3300012989\|Ga0164305_11405109	Not Available	615	Open in IMG/M
3300013096\|Ga0157307_1134578	Not Available	560	Open in IMG/M
3300013297\|Ga0157378_12792721	Not Available	541	Open in IMG/M
3300013306\|Ga0163162_10033566	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5101	Open in IMG/M
3300013306\|Ga0163162_12550708	Not Available	588	Open in IMG/M
3300013307\|Ga0157372_10852357	All Organisms → Viruses → Predicted Viral	1058	Open in IMG/M
3300013307\|Ga0157372_11617943	Not Available	746	Open in IMG/M
3300013307\|Ga0157372_12117602	Not Available	646	Open in IMG/M
3300013307\|Ga0157372_12389764	Not Available	607	Open in IMG/M
3300015077\|Ga0173483_10261652	Not Available	829	Open in IMG/M
3300015371\|Ga0132258_10090846	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella → Friedmanniella luteola	7161	Open in IMG/M
3300015371\|Ga0132258_12368007	All Organisms → cellular organisms → Bacteria	1331	Open in IMG/M
3300015371\|Ga0132258_12655650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1250	Open in IMG/M
3300015372\|Ga0132256_100570957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus → Microlunatus sagamiharensis	1245	Open in IMG/M
3300015372\|Ga0132256_102969650	Not Available	570	Open in IMG/M
3300015373\|Ga0132257_100979504	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus → Microlunatus sagamiharensis	1063	Open in IMG/M
3300015373\|Ga0132257_104033584	Not Available	534	Open in IMG/M
3300017792\|Ga0163161_10981487	Not Available	720	Open in IMG/M
3300017792\|Ga0163161_11403585	Not Available	610	Open in IMG/M
3300017792\|Ga0163161_11450275	Not Available	601	Open in IMG/M
3300018000\|Ga0184604_10085492	Not Available	951	Open in IMG/M
3300018051\|Ga0184620_10238434	Not Available	609	Open in IMG/M
3300018066\|Ga0184617_1033107	All Organisms → cellular organisms → Bacteria	1236	Open in IMG/M
3300018073\|Ga0184624_10102084	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1228	Open in IMG/M
3300018074\|Ga0184640_10304993	Not Available	723	Open in IMG/M
3300019361\|Ga0173482_10621737	Not Available	546	Open in IMG/M
3300019867\|Ga0193704_1098983	Not Available	512	Open in IMG/M
3300020005\|Ga0193697_1047135	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae	1073	Open in IMG/M
3300020069\|Ga0197907_11442746	Not Available	625	Open in IMG/M
3300020082\|Ga0206353_10421811	Not Available	634	Open in IMG/M
3300021078\|Ga0210381_10098596	Not Available	946	Open in IMG/M
3300021078\|Ga0210381_10197237	Not Available	701	Open in IMG/M
3300021968\|Ga0193698_1045468	Not Available	570	Open in IMG/M
3300022756\|Ga0222622_10017577	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3572	Open in IMG/M
3300022756\|Ga0222622_10596195	All Organisms → cellular organisms → Bacteria	797	Open in IMG/M
3300022756\|Ga0222622_10913897	Not Available	644	Open in IMG/M
3300023261\|Ga0247796_1014976	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinopolysporales → Actinopolysporaceae → Actinopolyspora → Actinopolyspora mzabensis	1154	Open in IMG/M
3300025899\|Ga0207642_10746704	Not Available	619	Open in IMG/M
3300025901\|Ga0207688_10211132	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Citricoccus → unclassified Citricoccus → Citricoccus sp. SGAir0253	1166	Open in IMG/M
3300025927\|Ga0207687_10202631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1552	Open in IMG/M
3300025935\|Ga0207709_10596402	Not Available	874	Open in IMG/M
3300025935\|Ga0207709_11238283	Not Available	616	Open in IMG/M
3300025961\|Ga0207712_11633996	Not Available	577	Open in IMG/M
3300025972\|Ga0207668_10910640	Not Available	783	Open in IMG/M
3300026075\|Ga0207708_10619264	All Organisms → cellular organisms → Bacteria → Terrabacteria group	918	Open in IMG/M
3300026089\|Ga0207648_10122626	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	2285	Open in IMG/M
3300026089\|Ga0207648_11633270	Not Available	606	Open in IMG/M
3300026118\|Ga0207675_100012788	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	7841	Open in IMG/M
3300027523\|Ga0208890_1033274	Not Available	782	Open in IMG/M
3300027907\|Ga0207428_10001293	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	26675	Open in IMG/M
3300028587\|Ga0247828_11190709	Not Available	510	Open in IMG/M
3300028708\|Ga0307295_10117477	Not Available	725	Open in IMG/M
3300028709\|Ga0307279_10019139	Not Available	926	Open in IMG/M
3300028710\|Ga0307322_10048608	Not Available	1032	Open in IMG/M
3300028711\|Ga0307293_10101891	Not Available	911	Open in IMG/M
3300028712\|Ga0307285_10027835	Not Available	1336	Open in IMG/M
3300028712\|Ga0307285_10086947	All Organisms → cellular organisms → Bacteria → Terrabacteria group	815	Open in IMG/M
3300028713\|Ga0307303_10011022	All Organisms → cellular organisms → Bacteria	1614	Open in IMG/M
3300028718\|Ga0307307_10150927	Not Available	725	Open in IMG/M
3300028721\|Ga0307315_10206949	Not Available	609	Open in IMG/M
3300028722\|Ga0307319_10333455	Not Available	503	Open in IMG/M
3300028744\|Ga0307318_10012073	All Organisms → cellular organisms → Bacteria	2765	Open in IMG/M
3300028754\|Ga0307297_10014860	All Organisms → cellular organisms → Bacteria	2120	Open in IMG/M
3300028755\|Ga0307316_10052509	Not Available	1371	Open in IMG/M
3300028768\|Ga0307280_10119330	Not Available	891	Open in IMG/M
3300028778\|Ga0307288_10036859	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	1641	Open in IMG/M
3300028784\|Ga0307282_10103121	Not Available	1325	Open in IMG/M
3300028784\|Ga0307282_10147242	Not Available	1114	Open in IMG/M
3300028787\|Ga0307323_10088520	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1107	Open in IMG/M
3300028787\|Ga0307323_10248387	Not Available	641	Open in IMG/M
3300028790\|Ga0307283_10205134	Not Available	565	Open in IMG/M
3300028796\|Ga0307287_10342212	Not Available	564	Open in IMG/M
3300028799\|Ga0307284_10383674	Not Available	571	Open in IMG/M
3300028810\|Ga0307294_10095895	Not Available	933	Open in IMG/M
3300028810\|Ga0307294_10219841	Not Available	663	Open in IMG/M
3300028811\|Ga0307292_10019465	Not Available	2381	Open in IMG/M
3300028814\|Ga0307302_10646830	Not Available	526	Open in IMG/M
3300028819\|Ga0307296_10032139	Not Available	2768	Open in IMG/M
3300028828\|Ga0307312_10407918	Not Available	893	Open in IMG/M
3300028875\|Ga0307289_10048278	Not Available	1699	Open in IMG/M
3300028876\|Ga0307286_10368799	Not Available	536	Open in IMG/M
3300028881\|Ga0307277_10067317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	1482	Open in IMG/M
3300028881\|Ga0307277_10554344	Not Available	516	Open in IMG/M
3300030905\|Ga0308200_1024319	All Organisms → cellular organisms → Bacteria	993	Open in IMG/M
3300030905\|Ga0308200_1083684	Not Available	655	Open in IMG/M
3300031091\|Ga0308201_10042402	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1100	Open in IMG/M
3300031093\|Ga0308197_10039449	Not Available	1162	Open in IMG/M
3300031184\|Ga0307499_10068268	Not Available	912	Open in IMG/M
3300031421\|Ga0308194_10356286	Not Available	522	Open in IMG/M
3300033550\|Ga0247829_11144644	Not Available	645	Open in IMG/M
3300033551\|Ga0247830_10074482	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2316	Open in IMG/M
3300034447\|Ga0370544_19213	Not Available	551	Open in IMG/M
3300034681\|Ga0370546_033571	Not Available	739	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	64.83%
Host-Associated	Host-Associated	35.17%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	56.55%
Plants	Host-Associated → Plants	35.17%
Aquatic	Environmental → Aquatic	8.28%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	56.55%
Rhizoplane	Host-Associated → Plants → Rhizoplane	17.24%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.93%
Sediment	Environmental → Aquatic → Sediment	5.52%
Freshwater	Environmental → Aquatic → Freshwater	2.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.41%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.79%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	12.41%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.52%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.83%
Loam	Environmental → Terrestrial → Soil → Loam	4.14%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.14%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.38%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.38%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	42.07%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	12.41%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.52%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.14%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.76%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.07%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.38%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.38%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.38%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	36.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.14%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.14%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.14%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.14%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.45%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.45%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.76%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.76%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.76%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.07%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.07%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.38%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.38%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.38%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.38%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.38%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.38%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.38%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.38%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.38%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.69%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.69%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.69%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.69%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.69%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.69%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.69%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.69%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.69%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.69%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.69%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012491	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.8.old.040610	Host-Associated	Open in IMG/M
3300012508	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.old.270510	Host-Associated	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013096	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019867	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m1	Environmental	Open in IMG/M
3300020005	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021968	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c1	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300023261	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S166-409R-6	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027523	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028709	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_118	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028713	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028790	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_122	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300030905	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034447	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_119 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034681	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_121 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_05021872	3300000033	Soil	MPWVRLSTWSDMRARNERVEALLEQWDSDVAAARSDPCKFSSAFEVLGTCAAEVREALDGGCDDED*
INPhiseqgaiiFebDRAFT_1053824642	3300000364	Soil	MPWVRLSTWSDMRARNERVEALLEQWDSDVAAARSDPCKFSSVFEVLGTCAGELHEALDGGCDDED*
F14TC_1049147521	3300000559	Soil	MPRVRLATWSDMRAREERVAALLEQWDSDVAAARSDPCKFSSAFEVLGTCAGELHEALDGRCDDED*
JGI11643J11755_114792122	3300000787	Soil	MPWVXLXTWXDMRARXERVXALLEQWDSDVAAARSDPCKFSSAFDVLGTCAAEVREALDGGCDDED*
JGI10216J12902_1066676592	3300000956	Soil	MPWVRLSKWRDIRAREARVEALLEQWDSDVSAARSAPSESWSEFEVLATCAGELHEALDGRCAEDWADLD*
JGI10216J12902_1212942422	3300000956	Soil	MPWVRLSKWRGIHAREERVEALLKQWDSDVSAARNAPRTFLSAFEVLATCAGELHEALDGRSDDDWADLD*
C688J35102_1198888331	3300002568	Soil	MPWVRLSKWRDIRAREARVEALLEQWDSDVSAARSGPCEFWSEFEVLATCAGELHEALDGRCAEDWADLD*
JGIcombinedJ43975_100495311	3300002899	Soil	MPWVRLATWSDMRAREERVAALLEQWDSDVAAARSDPCKFSSAFEVLGTCAAEVREALDGGCDDED*
Ga0062593_1009122972	3300004114	Soil	MPWVRLSTWRDMRAREERVEALLEQWDSNVAAARNDPWKFSSAFEVLGTCAGELHEALDEGCDDKD*
Ga0062589_1002814152	3300004156	Soil	MPWVRLSTWRDIRAREERVRTLLEQWDSDVSAARSDPGKFSSAFEVLGTCAGELHEALDGGCDDD*
Ga0062590_1007682581	3300004157	Soil	MPWVRLSTWRDIRAREERVRTLLEQWDSDVSAARSDPGKFSSAFEVLGTCAGELHEAL
Ga0063356_1028790202	3300004463	Arabidopsis Thaliana Rhizosphere	MPWVRLSTWRDMRAREERIEALLEQWDSNVAAARNDPGKFSSAFEVLGTCAGELHEALDEGCDEED*
Ga0062595_1000792893	3300004479	Soil	MPWVRLATWSDMRAREERVAALLEQWDSDVAAARSDPCKFSSAFEVLSTCAAEVREALDMGLR*
Ga0062595_1008326572	3300004479	Soil	MPWGRLSKWRDVCAREERVEALLQQWDSDVSAARSDPGKFSSAFEVLGTCADELHEAVDGVCDDDYY*
Ga0062595_1025936571	3300004479	Soil	MPWVRLSTWRDVCAREERVEALLEQWDSHVSAARSDPGKFSSAFEVLGTCADELHEAVDGVCDDDYY*
Ga0066809_100630752	3300005168	Soil	MPWVRLSKWRDMRAREERVEALLEQWDSDVSAARSDPGTFSRAFEVLGTCADDLREAMDGVCDDNDDYY*
Ga0066810_100552682	3300005169	Soil	MPWVRLSKWREVRAREERVEALLEQWDSDVSAARSDPGTFSRAFEVLGTCADDLREAMDGVCDDNDDYY*
Ga0068869_1004829791	3300005334	Miscanthus Rhizosphere	MPWVRLSTWRDMRAREERVEALLEQWDSNVAAARSDSCKFSGAFEVLGTCAGELHEALDG
Ga0070668_1005007442	3300005347	Switchgrass Rhizosphere	MPWVRLSKWRDVCAREERVEALLQQWDSDVSAARSDPGKFSSAFEVLGTCADELHEAVDGVCDDDYY*
Ga0070675_1021273361	3300005354	Miscanthus Rhizosphere	MPWMRLARWRDMCAREERVQGLLERWDSDVSAARSDPGTFSRAFEVLGTCADELREALDG
Ga0070659_1014538822	3300005366	Corn Rhizosphere	MRAREERVEALLEQWDSNVAAARSDPCKFSSAFEVLGTCAGELHEALDGDCAEDCDDED*
Ga0070700_1009655471	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MPWVRLSTWRDMRARDERVEALLEQWDSNVAAARSDPCKFSSAFEVLGTCAGELHEALDGDCAEDCDDED*
Ga0070700_1009997412	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MPWVRLSKWRDVCAREERVEALLEQWDSHVSAARSDPGKFSSAFEVLGTCADELHEAVDGVCDDDYY*
Ga0068867_1004096021	3300005459	Miscanthus Rhizosphere	MPWVRLSTWRDMRAREVRVEALLEQWDSNVAAARSDPCKFSSAFEVLGTCAGELHEALDGDCAEDCDDED*
Ga0070702_1007292562	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MPWVRLSTWRNMRAREVRVEALLEQWDSNVAAARSDPCKFSSAFEVLGTCAGELHEALDGDCAEDCDDED*
Ga0068852_1014407751	3300005616	Corn Rhizosphere	FVLRFFTACLSDASRRTLGGSMPWVRLSTWRDVCAREERVEALLEQWDSHVSAARSDPGKFSSAFEVLGTCADELHEAVDGVCDDDYY*
Ga0081455_101996703	3300005937	Tabebuia Heterophylla Rhizosphere	MPWVRLSEWRDIRAREERVEALLEQWDLNVSAARSDPRRFSSEFEVLGNCAAELHGALDGCSDDDWSDLD*
Ga0075432_100063158	3300006058	Populus Rhizosphere	MPWVRLSKWKDIRAREERVEALLEQWDTDVSAARNDPCRFSSAFEVLGTCAGELHEAVDGRSDDDWADLD*
Ga0075420_1011089101	3300006853	Populus Rhizosphere	MPWVRLSTWRDVCAREERVEALLEQWDSHVSAARSDPGKFSSAFEVLGTCADE
Ga0068865_1008183571	3300006881	Miscanthus Rhizosphere	MPWVRLSTWRNMRAREVRVEALLEQWDSNVAAARSDPCKFSSAFEVLGTCAGELHEALDGDCA
Ga0075419_100501923	3300006969	Populus Rhizosphere	VRIFVEALLEQWDSHVSAARSDPGKFSSAFEVLGTCADELHEAVDGVCDDDYY*
Ga0075435_1000298478	3300007076	Populus Rhizosphere	ARRKLGGSMPWVRLSKWKDIRAREERVEALLEQWDTDVSAARNDPCRFSSAFEVLGTCAGELHEAVDGRSDDDWADLD*
Ga0105245_111099061	3300009098	Miscanthus Rhizosphere	MPWVRLSTWRDMRAREERVEALLEQWDSNVAAARSDPCKFSSAFEVLGTCAGELHEALDGDCAEDCDDED*
Ga0105245_123186452	3300009098	Miscanthus Rhizosphere	AGERWEEAGRKLGGSMPWVRLSTWRDMRAREERVEALLEQWDSNIAAARNDPGKFSSAFEVLGTCAGELHEALDEGCDEED*
Ga0114129_127555082	3300009147	Populus Rhizosphere	EERVEALLEQWDTDVSAARNDPCRFSSAFEVLGTCAGELHEAVDGRSDDDWADLD*
Ga0105242_101322571	3300009176	Miscanthus Rhizosphere	MPWVRLSTWRDMRAREERVEALLEQWDSNVAAARSDSCKFSSAFEVLGTCAGELHEALDGDCAEDCDDED*
Ga0105249_133227031	3300009553	Switchgrass Rhizosphere	MPWVRLSTWRDMRAREERVEALLEQWDSNVAAARNDPGKFSSAFEVLGTCAGELHEAL
Ga0126314_100658452	3300010042	Serpentine Soil	MPLVRLSTWRDMRAREARVEALLEQWDSDVAAARSERCKFSSALEMLGTCAGELHEALDGGCDDQD*
Ga0126319_12021362	3300010147	Soil	AREERVEALLERWDSDVSAARSDPGTFSRAFEVLGTCAGELREALDGVCDDDDDYF*
Ga0127503_106031531	3300010154	Soil	MRAREERVEALLEQWDSNVAAARSDTRKFSSAFEVLGTCAGELHEALDGDCDEDCDDED*
Ga0134125_126535671	3300010371	Terrestrial Soil	MRAREVRVEALLEQWDSNVAAARSDPCKFSSAFEVLGTCAGELHEALDGDCAEDCDDED*
Ga0105239_111976991	3300010375	Corn Rhizosphere	MPWVRLSTWRDVCAREERVEALLEQWDSHVSAARSDPGKFSSAFEVLGTCADELHEAVD
Ga0150985_1113514882	3300012212	Avena Fatua Rhizosphere	MPWVRLSKWRGIRAREERVEALLRQWDSDVSAARNDPCRFSSAFEALATCEGELHEALYGRSDDDWADLD*
Ga0150985_1188832732	3300012212	Avena Fatua Rhizosphere	MPWVRLSKWRDIRAREARVEALVEQWDSDVSAARSGPCEFWSEFEVLATCAGELHEALDGRCAEDWADLD*
Ga0157329_10298601	3300012491	Arabidopsis Rhizosphere	MPWVRLSKWRDIRAREERVEALLEQWDLNVSAARSDPCKFSSGFEVLGTCAAELHGALDGRSDDDWADL
Ga0157315_10235761	3300012508	Arabidopsis Rhizosphere	MPWVRLSKWRDIRAREERVEALLEQWDLNVSAARSDPCKFSSGFEVLGTCAAELHGALDGRSDDDWADLD*
Ga0157302_101021211	3300012915	Soil	MRAREERVEALLEQWDSNVAAARNDPGKFSSAFEVLGTCAGELHEALDEGCDEED*
Ga0164298_100674672	3300012955	Soil	MPWVRLSTWRDMRAREERVEALLEQWDSNVAAARNDPGKFSSAFEVLGTCAGELHEALDEGCDEED*
Ga0164299_100121692	3300012958	Soil	MRAREVRVEALLEQWDSNVAAARNDPGKFSSAFEVLGTCAGELHEALDEGCDEED*
Ga0164299_100979971	3300012958	Soil	TWRDVRAREERVEELLEQWDSHVSAARSDPGKFSSAFEVLGMCADELHDALDGVCDDDYY
Ga0164301_107989901	3300012960	Soil	MPWVRLSTWRDLRAREERVEALLEQWDSNVAAARNDPGKFSSAFEVLGTCAGELHEAL
Ga0164302_113841751	3300012961	Soil	MPWVRYSTWRDVRAREERVEELLEQWDSHVSAARSDPGKFSSAFEVLGMCADELHDALDGVCDDDYY*
Ga0164305_114051091	3300012989	Soil	MRLSRWRDMCAREERVQGLLERWDSDVSAARSDPGTFSRAFEVLGTCADDLREAMDGVCDDDYF*
Ga0157307_11345781	3300013096	Soil	MPWVRLSKWRDICAREERVEALLRQWDSNVAAARNDPGKFSSAFEVLGTCAGELHEALDEGCDEED*
Ga0157378_127927211	3300013297	Miscanthus Rhizosphere	MPGVRLSKWRDVCAREERVEALLQQWDSDVSAARSDPGKFSSAFEVLGTCADELHEAV
Ga0163162_100335661	3300013306	Switchgrass Rhizosphere	GCMPWVRLSKWRDVCAREERVEALLQQWDSDVSAARSDPGKFSSAFEVLGTCADELHEAVDGVCDDDYY*
Ga0163162_125507081	3300013306	Switchgrass Rhizosphere	MPWVRLSTWRDMRAREERVEALLEQWDSNVAAARSDSCKFSSAFEVLGTCAGELHEA
Ga0157372_108523572	3300013307	Corn Rhizosphere	MRLARWRDMCAREERVQGLLERWDSDVSAARSDPGTFSRAFEVLGTCADELREALDGVCDDDDDYF*
Ga0157372_116179431	3300013307	Corn Rhizosphere	MPWVRLSTWRDMRARDERVEALLEQWDSNVAAARSDPCKFSSAFEVLGTCAGELHEALDGDCDEDCDDED*
Ga0157372_121176021	3300013307	Corn Rhizosphere	MPWVRLSKWRDVCAREERVEALLQQWDSDVSAARSDPGKVSSAFEVLGTCADELHEGVDGVCDDDYY*
Ga0157372_123897642	3300013307	Corn Rhizosphere	MPWMRLSTWRDIRAREERVEALLRQWDSDVSAARNDPCRFSSAFEALATCEGELHEALYGRSDDDWADPD*
Ga0173483_102616523	3300015077	Soil	MPWVRLSKWRDIRAREERVEALLKQWDSDVSAARNDPCSFSSAFEVVATCAGELHEALVGRSDDDWADL
Ga0132258_100908466	3300015371	Arabidopsis Rhizosphere	MRAREERVEALLEEWDSDVAAARSDPGKFSSEFEVLGTCAGELHDALDGGGDDED*
Ga0132258_123680072	3300015371	Arabidopsis Rhizosphere	VRLSKWRDIRAREERVEALLEQWDSDVSAARSDPYRFSGAFEVLGTCAGELHEALDGRSDDDWADLD*
Ga0132258_126556501	3300015371	Arabidopsis Rhizosphere	MPWVRLSKWRDIRVREERVDALLKQWDSDVSAARNDPRSFTSAFEVVATCAGELHEALDGHSDDDWADLD*
Ga0132256_1005709571	3300015372	Arabidopsis Rhizosphere	MPWVRLSKWRDIRVREERVEALLKQWDSDVSAARNDPRSFTSAFEVVATCAGELHEALDGRSDDDWADMD*
Ga0132256_1029696502	3300015372	Arabidopsis Rhizosphere	LSKWKDIRAREERVGALLEQWDTDVSAARNDPCRFSSAFEVLGTCAGELHEAVDGRSDDDWADLD*
Ga0132257_1009795042	3300015373	Arabidopsis Rhizosphere	MPGVRLSKWRDIRAREERVEALLEQWDSDVSAARSDPYRFSGAFEVLGTCAGELHEALDGRFDDDWADLD*
Ga0132257_1040335842	3300015373	Arabidopsis Rhizosphere	WVRLSTLRDMRAREERVEALLEEWDSDIAAARSDPCKFSSAFDVLGTCAGELHDALDGVGDDED*
Ga0163161_109814872	3300017792	Switchgrass Rhizosphere	MPWVRLSTWRDVCAREERVEALLEQWDSHVSAARSDPGKFSSAFEVLGTCADELHEAVDGVCDDDYY
Ga0163161_114035851	3300017792	Switchgrass Rhizosphere	MPWVRLSTWRNMRAREVRVEALLEQWDSNVAAARGDPCKFSSAFEVLGTCAGELHEALDGDCDE
Ga0163161_114502751	3300017792	Switchgrass Rhizosphere	MPWVRLSTWRDMRAREERVEALLEQWDSNVAAARSDSCKFSGAFEVLGTCAGELHEALDGDCDEDCDDED
Ga0184604_100854922	3300018000	Groundwater Sediment	MPWVRLATWSDMRAREERVKALLEQWDSDVAAARSDPCKFSSAFDVLGTCAAEVREALNEGGDDED
Ga0184620_102384341	3300018051	Groundwater Sediment	MPWVRLSTWSDMRARLERVEALLEQWDSDVAAARSDPCKFSSAFEVVGTCAGELYEALDGGGDDAN
Ga0184617_10331072	3300018066	Groundwater Sediment	MPWVRLPTWSDMRAREERVKALLEQWDSDVAAARSDPCKFSSAFDVLGTCAAEVREALNEGGDDED
Ga0184624_101020842	3300018073	Groundwater Sediment	RAREERVDALLEQWDSNVAAARNDPGKFSSAFEVLGTCAGELHEALDEGCDEED
Ga0184640_103049931	3300018074	Groundwater Sediment	MRAREERVDALLEQWDSNVAAARNDPGKFSSAFEVLGTCAGELHEALDEGCDEED
Ga0173482_106217371	3300019361	Soil	MPWVRLSTWRDIRAREERVRTLLEQWDSDVSAARSDPGKFSSAFEVLGTCAGELHEALDGGCDDD
Ga0193704_10989831	3300019867	Soil	MPWVRLSTWRDMRAREERVDALLEQWDSNVAAARNDPGKFSSAFEVLGTCAGELHEALDEGCDEED
Ga0193697_10471352	3300020005	Soil	MPWVRHSTWRHVRAREERVEELLEQWDSRVSAARSDPGKFSSAFEVLGMCADELHDALDEVCDDDYY
Ga0197907_114427463	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	GSMPWVRLSTWRDVCAREERVEALLEQWDSHVSAARSDPGKFSSAFEVLGTCADELHEAVDGVCDDDYY
Ga0206353_104218111	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	SMPWVRLSTWRDVCASEERVEALLEQWDSHVSAARSDPGKFSSAFEVLGTCADELHEAVDGVCDDDYY
Ga0210381_100985961	3300021078	Groundwater Sediment	MRAREERVEALLERWDSDVSAARSDPGTFLRAFEVLGTCADELHQALD
Ga0210381_101972371	3300021078	Groundwater Sediment	TLGGTMPWVRLSTWTEMRAREQRLEALLEQWDSDVSAARSDPCKFSSAFDVLGTCAGELHEALDGGCDDD
Ga0193698_10454681	3300021968	Soil	SMPWVRLSTWRDMRAREERVEALLEQWDSNVAAARNEPGKFSSAFEVLGTCAGELHEALDEGCDEED
Ga0222622_100175776	3300022756	Groundwater Sediment	VRLSRWRDMRAREERVEALLERWDSDVSAARSDPGTFLRAFEVLGTCADELHQALDGVCDDDYL
Ga0222622_105961951	3300022756	Groundwater Sediment	WRTLGGSMPWVRLATWSDMRAREERVKALLEQWDSDVAAARSNPCKFSSAFDVLGTCAAEVREALNEGGDDED
Ga0222622_109138971	3300022756	Groundwater Sediment	MPWVRLSTWRDMRAREERVEALLEQWDSNVAAARSDPCKFSSAFEVLGTCAGELHEALDGDCDEDCDDED
Ga0247796_10149762	3300023261	Soil	SMPWVRLSTWRDIRAREERVRTLLEQWDSDVSAARSDPGKFSSAFEVLGTCAGELHEALDGGCDDD
Ga0207642_107467041	3300025899	Miscanthus Rhizosphere	MRARDERVEALLEQWDSNVAAARSDPCKFSSAFEVLGTCAGELHEALDGDCAEDCDDED
Ga0207688_102111321	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MPWVRLSTWRDMRAREERVEALLEQWDSNVAAARSDSCKFSSAFEVLGTCAGELHEALDGDCAEDCDDED
Ga0207687_102026312	3300025927	Miscanthus Rhizosphere	MPWVRLSTWRDMRAREERVEALLEQWDSNVAAARSDPCKFSSAFEVLGTCAGELHEALDGDCAEDCDDED
Ga0207709_105964021	3300025935	Miscanthus Rhizosphere	MRAREERVEALLEQWDSNVAAARNDPGKFSSAFEVLGTCAGELHEAL
Ga0207709_112382831	3300025935	Miscanthus Rhizosphere	MPWVRLSKWRDVCAREERVEALLQQWDSDVSAARSDPGKFSSAFEVLGTCADELREALDGVCDDDDDYF
Ga0207712_116339961	3300025961	Switchgrass Rhizosphere	MPWVRLSTWRDMRAREERVEALLEQWDSNVAAARNDPGKFSSAFEVLGTCAGELHEALDEGCDEED
Ga0207668_109106401	3300025972	Switchgrass Rhizosphere	MPWVRLSKWRDVCAREERVEALLQQWDSDVSAARSDPGKFSSAFEVLGTCADELHEAVDGVCDDDYY
Ga0207708_106192643	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	WVRLSTWRDMRARDERVEALLEQWDSNVAAARSDPCKFSSAFEVLGTCAGELHEALDGDCAEDCDDED
Ga0207648_101226261	3300026089	Miscanthus Rhizosphere	MPWVRLSTWRDMRAREVRVEALLEQWDSNVAAARSDPCKFSSAFEVLGTCAGELHEALDGDCAEDCDDED
Ga0207648_116332701	3300026089	Miscanthus Rhizosphere	MPWVRLSTWRDVCAREERVEALLEQWDSHVSAARSDPGKFSSAFEVLGTCAGELHEALDEGCDEED
Ga0207675_1000127888	3300026118	Switchgrass Rhizosphere	MPWVRLSTWRNMRAREVRVEALLEQWDSNVAAARSDPCKFSSAFEVLGTCAGELHEALDGDCAEDCDDED
Ga0208890_10332742	3300027523	Soil	MPWVRLSKWREVRAREERVEALLEQWDSDVSAARSDPGTFSRAFEVLGTCADDLREAMDGVCDDNDDYY
Ga0207428_1000129315	3300027907	Populus Rhizosphere	MPWVRLSKWKDIRAREERVEALLEQWDTDVSAARNDPCRFSSAFEVLGTCAGELHEAVDGRSDDDWADLD
Ga0247828_111907091	3300028587	Soil	MPWVRLAKWRHIRAREERVEALLEQWDLNVSAARSDPCKLSSAFDVLGTCAGELHEALDGGCDDD
Ga0307295_101174773	3300028708	Soil	LSACPGDSGRRTLGGRMPWVRLSKWRDMRAREERVEALLERWDSDVSAARSDPGTFLRAFEVLGTCADELHQALDGVCDDDYL
Ga0307279_100191392	3300028709	Soil	MPWVRLSTWSDMRARLERVEALLEQWDSDVAAARSDPCKFSSAFEVVGTCAGELYEALDGGG
Ga0307322_100486082	3300028710	Soil	MPWVRLSTWRDMRAREERVEALLEQWDSDVAAARSDPCKFSSAFEVLGTCACDLHEALDG
Ga0307293_101018911	3300028711	Soil	MPWVRLSTWTEMRAREQRLEALLEQWDSDVSAARSDPCKFSSAFDVLGTCAGELHEALDGGCDDD
Ga0307285_100278352	3300028712	Soil	MRAREERVEALLERWDSDVSAARSDPGTFLRAFEVLGTCADELHQALDGVCDDDYL
Ga0307285_100869471	3300028712	Soil	TKLGGSMPWVRLSAWRDMRAREERVEALLEQWDSNVAAARSDTRKFSSAFEVLGTCAGELHEALDGDCDEDCDDED
Ga0307303_100110223	3300028713	Soil	MPWVRLATWSDMRAREERVKALLEQWDSDVAAARINPCKFSSAFDVLGTCAAEVREALNEGGDDED
Ga0307307_101509271	3300028718	Soil	TEMRAREQRLEALLEQWDSDVSAARSDPCKFSSAFDVLGTCAGELHEALDGGCDDD
Ga0307315_102069491	3300028721	Soil	MPWVRLSTWTEMRAREQRVEAMLEQWDSDVSAARSDPCKFSSAFDVLGTCAGELHEALDGGCDDD
Ga0307319_103334551	3300028722	Soil	VPWVRLSTWRDMRAREERVEALLEQWDSNVAAARSDTRKFSSAFEVLGTCAGELHEAL
Ga0307318_100120734	3300028744	Soil	MRAREERVEALLERWDSDVSAARSDPGTFLRAFEVDGVCDDDYL
Ga0307297_100148602	3300028754	Soil	MPWVRLSTWTEMRAREQRLEALLEQWDSDVSAARSDPCKFSSAFDVLGTCAGELHEALDG
Ga0307316_100525091	3300028755	Soil	MRAREERVEALLEQWDSNVAAARSDTRKFSSAFEVLGTCAGELHEALDGDCDEDCDDED
Ga0307280_101193301	3300028768	Soil	MPWVRLSKWRDMRAREERVEALLERWDSDVSAARSDPGKFSRAFEVLGTCADELHEAMDGVCDDDDDYF
Ga0307288_100368591	3300028778	Soil	AGQPLESAGRKLGGSMPWVRLSTWRDMRAREERVDALLEQWDSNVAAARNDPGKFSSAFEVLGTCAGELHEALDEGCDEED
Ga0307282_101031213	3300028784	Soil	MDMRAREERVEALLERWDSDVSAARSDPGKFSRAFEVLGTCADELHEAMDGVCDDDDDYF
Ga0307282_101472422	3300028784	Soil	MPWVRLSRWRDMCAREERVKGLLERWDSDVSAARSDPGTFSRAFEVLGTCADELREALDGVCDDDDDYF
Ga0307323_100885201	3300028787	Soil	WTEMRAREQRLEALLEQWDSDVSAARSDPCKFSSAFDVLGTCAGELHEALDGGCDDD
Ga0307323_102483872	3300028787	Soil	MPWVRLSKWRDMRAREERVEALLERWDSDVSAARSDPGTFLRAFEVLGTCADELHQALDGVCDDDYL
Ga0307283_102051341	3300028790	Soil	AYNTGNRWRALGGSMPWVRLSTWSDMRARLERVEALLEQWDSDVAAARSDPCKFSSAFEVVGTCAGELYEALDGGGDDAN
Ga0307287_103422121	3300028796	Soil	VPWVRLSTWRDMRAREERVEALLEQWDSNVAAARSDTRKFSSAFEVLGTCAGELH
Ga0307284_103836741	3300028799	Soil	WVRLSRWRDMRAREERVEALLERWDSDVSAARSDPGKFSRAFEVLGTCADELHEAMDGVCDDDDDYF
Ga0307294_100958952	3300028810	Soil	MRAREERVEALLERWDSDVSAARSDPGTFLRAFEVLGTCADELHQALDGVCDDDYLYGLSRT
Ga0307294_102198411	3300028810	Soil	PWVRLSTWRDMRAREERVDALLEQWDSNVAAARNDPGKFSSAFEVLGTCAGELHEALDEGCDEED
Ga0307292_100194652	3300028811	Soil	VRLSRWRDMRAREERVEALLERWDSDVSAARSDPGKFSRAFEVLGTCADELHEAMDGVCDDDDDYF
Ga0307302_106468301	3300028814	Soil	VQARRQPLGRIALQTPERKLGGSVPWVRLSTWRDMRAREERVEALLEQWDSNVAAARSDTRKFSSAFEVLGTCAGELHEALDGDCDEDCDDED
Ga0307296_100321392	3300028819	Soil	ITLFRWRTLGGTMPWVRLSTWTEMRAREQRVEALLEQWDSDVSAARSDPCKFSSAFDVLGTCAGELHEALDGGCDDD
Ga0307312_104079181	3300028828	Soil	MPWVRLSTWRDMRAREERVDALLEQWDSNVAAARNDPGKFSSAFEVLGTCAGELHEALDGDCDEDCDDED
Ga0307289_100482781	3300028875	Soil	MPWVRLSTWRDMRAREERVDALLEQWDSNVAAARNDPGKFSSAFEVLGTCAGELHEALDEGC
Ga0307286_103687992	3300028876	Soil	MPWVRHSTWRHVRAREERVEELLEQWDSRVSAARSDPGKFSSAFEVLGMCADELHDALDGVCDDDYY
Ga0307277_100673172	3300028881	Soil	MPWVRLSKWRDMRAREERVEALLEQWDSDVLAARSAPCKFSSEFEVLGTCAGELHEALDGGCDDD
Ga0307277_105543441	3300028881	Soil	MPWVRLPTWSDMRAREERVKALLEQWDSDVAAARSNPCKFSSAFDVLGTCAAEVREALNEGGDDED
Ga0308200_10243192	3300030905	Soil	MPWVRLATWSDMRAREERVKALLEQWDSDVAAARSNPCKFSSAFDVLGTCAAEVREALNEGGDDED
Ga0308200_10836841	3300030905	Soil	RSGRTTLQPLESAGRKLGGSMPWVRLSTWRDMRAREERVEALLEQWDSNVAAARNDPGKFSSAFEVLGTCAGELHEALDEGCDEED
Ga0308201_100424021	3300031091	Soil	SMPWVRLSTWSDMRARLERVEALLEQWDSDVAAARSDPCKFSSAFEVVGTCAGELYEALDGGGDDAN
Ga0308197_100394491	3300031093	Soil	MRARLERVEALLEQWDSDVAAARSDPCKFSSAFEVVGTCAGELYEALDGGGDDAN
Ga0307499_100682681	3300031184	Soil	MPWVRLSTWRAMRAREERVEALLEQWDSNVAAARGDACKFSSAFEVLGTCAGELHEALDGDCDEDCDDED
Ga0308194_103562861	3300031421	Soil	MPWVRLATWSDMRAREERVKALLEQWDSDVAAARSDPCKFSSAFDVLGTCAAEVREAL
Ga0247829_111446442	3300033550	Soil	MPWVRLSMWREMRAREERVEALLEQWDSDVSAARSDPCKLSSAFDVLGTCAGELHEALDGGCDDD
Ga0247830_100744823	3300033551	Soil	FFTACLSDASRRTLGGSMPWVRLSTWRDVCAREERVEALLEQWDSHVSAARSDPGKFSSAFEVLGTCADELHEAVDGVCDDDYY
Ga0370544_19213_224_421	3300034447	Soil	MPWVRLSTWTEMRAREQRVEALLEQWDSDVSAARSDPCKFSSAFDVLGTCAGELHEALDGGCDDD
Ga0370546_033571_531_734	3300034681	Soil	MPWVRLSRWRDMCAREERVKGLLERWDSDVSAARSDPGTFSRAFEVLGTCADELREALDGVCDDDYF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F050199

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences