NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F051003

Metagenome Family F051003

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F051003
Family Type Metagenome
Number of Sequences 144
Average Sequence Length 44 residues
Representative Sequence GELVAALPAGLPLAIEAPCRATADLPALERARRAYRALSALGGA
Number of Associated Samples 130
Number of Associated Scaffolds 144

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 7.69 %
% of genes near scaffold ends (potentially truncated) 91.67 %
% of genes from short scaffolds (< 2000 bps) 90.28 %
Associated GOLD sequencing projects 126
AlphaFold2 3D model prediction Yes
3D model pTM-score0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (89.583 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(15.278 % of family members)
Environment Ontology (ENVO) Unclassified
(31.944 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(34.028 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: No Secondary Structure distribution: α-helix: 29.17%    β-sheet: 0.00%    Coil/Unstructured: 70.83%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.47
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 144 Family Scaffolds
PF00296Bac_luciferase 13.89
PF14833NAD_binding_11 7.64
PF00378ECH_1 6.25
PF09995MPAB_Lcp_cat 6.25
PF01323DSBA 4.17
PF13561adh_short_C2 3.47
PF00067p450 3.47
PF02738MoCoBD_1 3.47
PF00903Glyoxalase 2.78
PF00578AhpC-TSA 2.78
PF10049DUF2283 2.78
PF01546Peptidase_M20 2.08
PF01451LMWPc 2.08
PF13191AAA_16 1.39
PF00106adh_short 1.39
PF05721PhyH 1.39
PF12773DZR 1.39
PF13458Peripla_BP_6 0.69
PF01436NHL 0.69
PF05378Hydant_A_N 0.69
PF04879Molybdop_Fe4S4 0.69
PF00156Pribosyltran 0.69
PF01402RHH_1 0.69
PF02566OsmC 0.69
PF00211Guanylate_cyc 0.69
PF01850PIN 0.69
PF09972DUF2207 0.69
PF00528BPD_transp_1 0.69
PF03446NAD_binding_2 0.69
PF00285Citrate_synt 0.69
PF04909Amidohydro_2 0.69
PF12681Glyoxalase_2 0.69
PF02574S-methyl_trans 0.69
PF07690MFS_1 0.69
PF00884Sulfatase 0.69
PF02126PTE 0.69
PF01370Epimerase 0.69
PF09585Lin0512_fam 0.69

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 144 Family Scaffolds
COG2141Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)Coenzyme transport and metabolism [H] 13.89
COG2124Cytochrome P450Defense mechanisms [V] 3.47
COG0145N-methylhydantoinase A/oxoprolinase/acetone carboxylase, beta subunitAmino acid transport and metabolism [E] 1.39
COG5285Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) familySecondary metabolites biosynthesis, transport and catabolism [Q] 1.39
COG0372Citrate synthaseEnergy production and conversion [C] 0.69
COG0646Methionine synthase I (cobalamin-dependent), methyltransferase domainAmino acid transport and metabolism [E] 0.69
COG1735Predicted metal-dependent hydrolase, phosphotriesterase familyGeneral function prediction only [R] 0.69
COG1764Organic hydroperoxide reductase OsmC/OhrADefense mechanisms [V] 0.69
COG1765Uncharacterized OsmC-related proteinGeneral function prediction only [R] 0.69
COG2040Homocysteine/selenocysteine methylase (S-methylmethionine-dependent)Amino acid transport and metabolism [E] 0.69
COG2114Adenylate cyclase, class 3Signal transduction mechanisms [T] 0.69


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms89.58 %
UnclassifiedrootN/A10.42 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000364|INPhiseqgaiiFebDRAFT_100655634Not Available604Open in IMG/M
3300000881|JGI10215J12807_1187920All Organisms → cellular organisms → Bacteria708Open in IMG/M
3300000891|JGI10214J12806_10747147All Organisms → cellular organisms → Bacteria967Open in IMG/M
3300001661|JGI12053J15887_10508343All Organisms → cellular organisms → Bacteria575Open in IMG/M
3300002121|C687J26615_10096677Not Available740Open in IMG/M
3300002899|JGIcombinedJ43975_10090398All Organisms → cellular organisms → Bacteria → Proteobacteria552Open in IMG/M
3300004020|Ga0055440_10044976All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia953Open in IMG/M
3300004024|Ga0055436_10160732All Organisms → cellular organisms → Bacteria → Proteobacteria689Open in IMG/M
3300004156|Ga0062589_101294197All Organisms → cellular organisms → Bacteria704Open in IMG/M
3300005172|Ga0066683_10593849All Organisms → cellular organisms → Bacteria672Open in IMG/M
3300005178|Ga0066688_10970767All Organisms → cellular organisms → Bacteria519Open in IMG/M
3300005295|Ga0065707_10503429All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella755Open in IMG/M
3300005343|Ga0070687_101331916All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia534Open in IMG/M
3300005353|Ga0070669_100333866All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1227Open in IMG/M
3300005439|Ga0070711_100429005All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingopyxis → Sphingopyxis macrogoltabida1079Open in IMG/M
3300005444|Ga0070694_100757584All Organisms → cellular organisms → Bacteria → Proteobacteria793Open in IMG/M
3300005446|Ga0066686_10377529All Organisms → cellular organisms → Bacteria968Open in IMG/M
3300005446|Ga0066686_10410232All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium926Open in IMG/M
3300005540|Ga0066697_10009024All Organisms → cellular organisms → Bacteria5064Open in IMG/M
3300005544|Ga0070686_101300930All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia607Open in IMG/M
3300005546|Ga0070696_101977072All Organisms → cellular organisms → Bacteria506Open in IMG/M
3300005577|Ga0068857_100092151All Organisms → cellular organisms → Bacteria2713Open in IMG/M
3300005617|Ga0068859_100151122All Organisms → cellular organisms → Bacteria2397Open in IMG/M
3300005843|Ga0068860_101732366All Organisms → cellular organisms → Bacteria647Open in IMG/M
3300005876|Ga0075300_1039045All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria660Open in IMG/M
3300005879|Ga0075295_1000769All Organisms → cellular organisms → Bacteria1968Open in IMG/M
3300005879|Ga0075295_1025309All Organisms → cellular organisms → Bacteria719Open in IMG/M
3300005880|Ga0075298_1003370All Organisms → cellular organisms → Bacteria → Proteobacteria1102Open in IMG/M
3300006047|Ga0075024_100295768All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium792Open in IMG/M
3300006797|Ga0066659_11285619All Organisms → cellular organisms → Bacteria610Open in IMG/M
3300006846|Ga0075430_100543873All Organisms → cellular organisms → Bacteria958Open in IMG/M
3300006853|Ga0075420_101659681Not Available547Open in IMG/M
3300006854|Ga0075425_100024357All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria6661Open in IMG/M
3300006854|Ga0075425_101916617All Organisms → cellular organisms → Bacteria664Open in IMG/M
3300006880|Ga0075429_101443368All Organisms → cellular organisms → Bacteria599Open in IMG/M
3300006881|Ga0068865_101232790All Organisms → cellular organisms → Bacteria663Open in IMG/M
3300006918|Ga0079216_10389077Not Available870Open in IMG/M
3300006969|Ga0075419_11514866All Organisms → cellular organisms → Bacteria503Open in IMG/M
3300007076|Ga0075435_101311555All Organisms → cellular organisms → Bacteria634Open in IMG/M
3300007265|Ga0099794_10015617All Organisms → cellular organisms → Bacteria → Proteobacteria3356Open in IMG/M
3300009038|Ga0099829_10219659All Organisms → cellular organisms → Bacteria1543Open in IMG/M
3300009089|Ga0099828_11812299All Organisms → cellular organisms → Bacteria536Open in IMG/M
3300009090|Ga0099827_10514838All Organisms → cellular organisms → Bacteria1029Open in IMG/M
3300009090|Ga0099827_10635065All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium921Open in IMG/M
3300009156|Ga0111538_12046018All Organisms → cellular organisms → Bacteria720Open in IMG/M
3300009553|Ga0105249_11062452All Organisms → cellular organisms → Bacteria → Proteobacteria879Open in IMG/M
3300009815|Ga0105070_1051746All Organisms → cellular organisms → Bacteria762Open in IMG/M
3300010304|Ga0134088_10244881All Organisms → cellular organisms → Bacteria862Open in IMG/M
3300010304|Ga0134088_10495779All Organisms → cellular organisms → Bacteria601Open in IMG/M
3300010366|Ga0126379_11046313All Organisms → cellular organisms → Bacteria922Open in IMG/M
3300010376|Ga0126381_101228194All Organisms → cellular organisms → Bacteria1083Open in IMG/M
3300010400|Ga0134122_10090522All Organisms → cellular organisms → Bacteria2407Open in IMG/M
3300011270|Ga0137391_10397417All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1178Open in IMG/M
3300011441|Ga0137452_1153354All Organisms → cellular organisms → Bacteria775Open in IMG/M
3300012096|Ga0137389_11490606All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella572Open in IMG/M
3300012204|Ga0137374_10076740All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3259Open in IMG/M
3300012349|Ga0137387_10108627All Organisms → cellular organisms → Bacteria1942Open in IMG/M
3300012354|Ga0137366_10071792All Organisms → cellular organisms → Bacteria2638Open in IMG/M
3300012355|Ga0137369_10291859All Organisms → cellular organisms → Bacteria1214Open in IMG/M
3300012358|Ga0137368_10265933All Organisms → cellular organisms → Bacteria1177Open in IMG/M
3300012363|Ga0137390_10290074All Organisms → cellular organisms → Bacteria1619Open in IMG/M
3300012363|Ga0137390_11954920All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella513Open in IMG/M
3300012907|Ga0157283_10393032All Organisms → cellular organisms → Bacteria513Open in IMG/M
3300012917|Ga0137395_10893142All Organisms → cellular organisms → Bacteria643Open in IMG/M
3300012922|Ga0137394_10117091All Organisms → cellular organisms → Bacteria2253Open in IMG/M
3300012922|Ga0137394_10376497All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1211Open in IMG/M
3300012929|Ga0137404_11020350All Organisms → cellular organisms → Bacteria757Open in IMG/M
3300012944|Ga0137410_11971328All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria519Open in IMG/M
3300012948|Ga0126375_11209371Not Available629Open in IMG/M
3300012948|Ga0126375_11618423Not Available558Open in IMG/M
3300013306|Ga0163162_10599212All Organisms → cellular organisms → Bacteria1228Open in IMG/M
3300014883|Ga0180086_1131195Not Available651Open in IMG/M
3300015052|Ga0137411_1327903All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2717Open in IMG/M
3300015241|Ga0137418_10391606All Organisms → cellular organisms → Bacteria1136Open in IMG/M
3300015259|Ga0180085_1011290All Organisms → cellular organisms → Bacteria2442Open in IMG/M
3300015371|Ga0132258_11118533All Organisms → cellular organisms → Bacteria1991Open in IMG/M
3300017792|Ga0163161_10560808All Organisms → cellular organisms → Bacteria937Open in IMG/M
3300017930|Ga0187825_10360487All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella552Open in IMG/M
3300017939|Ga0187775_10237171All Organisms → cellular organisms → Bacteria694Open in IMG/M
3300017944|Ga0187786_10496692Not Available552Open in IMG/M
3300017961|Ga0187778_10710181All Organisms → cellular organisms → Bacteria → Proteobacteria680Open in IMG/M
3300018053|Ga0184626_10068259All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium1496Open in IMG/M
3300018060|Ga0187765_10505100All Organisms → cellular organisms → Bacteria766Open in IMG/M
3300018063|Ga0184637_10728972All Organisms → cellular organisms → Bacteria538Open in IMG/M
3300018074|Ga0184640_10064810All Organisms → cellular organisms → Bacteria1536Open in IMG/M
3300018076|Ga0184609_10100070All Organisms → cellular organisms → Bacteria1302Open in IMG/M
3300018076|Ga0184609_10287104All Organisms → cellular organisms → Bacteria → Proteobacteria770Open in IMG/M
3300018077|Ga0184633_10459780All Organisms → cellular organisms → Bacteria626Open in IMG/M
3300018084|Ga0184629_10270379All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium891Open in IMG/M
3300018422|Ga0190265_12438613All Organisms → cellular organisms → Bacteria623Open in IMG/M
3300018433|Ga0066667_10432759All Organisms → cellular organisms → Bacteria1071Open in IMG/M
3300018482|Ga0066669_10211564All Organisms → cellular organisms → Bacteria1496Open in IMG/M
3300018482|Ga0066669_10513211All Organisms → cellular organisms → Bacteria1039Open in IMG/M
3300019487|Ga0187893_10585421Not Available710Open in IMG/M
3300020003|Ga0193739_1034686All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1309Open in IMG/M
3300020198|Ga0194120_10004475All Organisms → cellular organisms → Bacteria → Proteobacteria21534Open in IMG/M
3300021090|Ga0210377_10495731All Organisms → cellular organisms → Bacteria706Open in IMG/M
3300021170|Ga0210400_10478674All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingopyxis → Sphingopyxis macrogoltabida1027Open in IMG/M
3300021180|Ga0210396_10831097All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingopyxis → Sphingopyxis macrogoltabida791Open in IMG/M
3300021420|Ga0210394_11290951All Organisms → cellular organisms → Bacteria624Open in IMG/M
3300022534|Ga0224452_1105392All Organisms → cellular organisms → Bacteria863Open in IMG/M
3300022563|Ga0212128_10801296Not Available560Open in IMG/M
3300025538|Ga0210132_1041465All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium669Open in IMG/M
3300025538|Ga0210132_1052810All Organisms → cellular organisms → Bacteria601Open in IMG/M
3300025938|Ga0207704_11182269Not Available652Open in IMG/M
3300026035|Ga0207703_10508930All Organisms → cellular organisms → Bacteria1131Open in IMG/M
3300026089|Ga0207648_11856261Not Available564Open in IMG/M
3300026285|Ga0209438_1209648All Organisms → cellular organisms → Bacteria522Open in IMG/M
3300026307|Ga0209469_1043771All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria1440Open in IMG/M
3300026309|Ga0209055_1188939All Organisms → cellular organisms → Bacteria633Open in IMG/M
3300026515|Ga0257158_1049555All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella773Open in IMG/M
3300026524|Ga0209690_1267810All Organisms → cellular organisms → Bacteria538Open in IMG/M
3300026548|Ga0209161_10215692All Organisms → cellular organisms → Bacteria1043Open in IMG/M
3300026551|Ga0209648_10323374All Organisms → cellular organisms → Bacteria1085Open in IMG/M
3300026772|Ga0207596_103234All Organisms → cellular organisms → Bacteria675Open in IMG/M
3300027646|Ga0209466_1044660All Organisms → cellular organisms → Bacteria899Open in IMG/M
3300027765|Ga0209073_10111970All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella975Open in IMG/M
3300027765|Ga0209073_10115333All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingopyxis → Sphingopyxis macrogoltabida962Open in IMG/M
3300027775|Ga0209177_10001380All Organisms → cellular organisms → Bacteria → Proteobacteria4269Open in IMG/M
3300027775|Ga0209177_10418448All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingopyxis → Sphingopyxis macrogoltabida541Open in IMG/M
3300027846|Ga0209180_10146360All Organisms → cellular organisms → Bacteria1360Open in IMG/M
3300028608|Ga0247819_10080218All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium1599Open in IMG/M
3300028792|Ga0307504_10197095All Organisms → cellular organisms → Bacteria711Open in IMG/M
3300030336|Ga0247826_11320343All Organisms → cellular organisms → Bacteria581Open in IMG/M
3300031548|Ga0307408_102432123All Organisms → cellular organisms → Bacteria509Open in IMG/M
3300031681|Ga0318572_10147337All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1358Open in IMG/M
3300031736|Ga0318501_10579663All Organisms → cellular organisms → Bacteria615Open in IMG/M
3300031832|Ga0318499_10144593All Organisms → cellular organisms → Bacteria927Open in IMG/M
3300031858|Ga0310892_10309463All Organisms → cellular organisms → Bacteria999Open in IMG/M
3300031944|Ga0310884_10782230Not Available582Open in IMG/M
3300032001|Ga0306922_10334014All Organisms → cellular organisms → Bacteria1626Open in IMG/M
3300032163|Ga0315281_10909072All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria899Open in IMG/M
3300032180|Ga0307471_104137299Not Available512Open in IMG/M
3300032205|Ga0307472_102296573All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella546Open in IMG/M
3300032261|Ga0306920_102292426All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium748Open in IMG/M
3300032893|Ga0335069_12764716All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingopyxis → Sphingopyxis macrogoltabida503Open in IMG/M
3300033412|Ga0310810_11068323All Organisms → cellular organisms → Bacteria678Open in IMG/M
3300033550|Ga0247829_10517535All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia989Open in IMG/M
3300033551|Ga0247830_11159544All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria617Open in IMG/M
3300034090|Ga0326723_0564237All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingopyxis → Sphingopyxis macrogoltabida525Open in IMG/M
3300034165|Ga0364942_0205295All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria643Open in IMG/M
3300034165|Ga0364942_0243544All Organisms → cellular organisms → Bacteria → Acidobacteria587Open in IMG/M
3300034692|Ga0373917_0069051All Organisms → cellular organisms → Bacteria567Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil15.28%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil9.03%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere5.56%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment4.86%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil4.86%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil4.17%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.47%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil3.47%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil3.47%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands2.78%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil2.78%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil2.78%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland2.78%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil2.08%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.08%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere2.08%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere2.08%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.39%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.39%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil1.39%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.39%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere1.39%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment1.39%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.39%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.69%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake0.69%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment0.69%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.69%
Thermal SpringsEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs0.69%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.69%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.69%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.69%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.69%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.69%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.69%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.69%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.69%
SoilEnvironmental → Terrestrial → Soil → Loam → Unclassified → Soil0.69%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand0.69%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil0.69%
Microbial Mat On RocksEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks0.69%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.69%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.69%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.69%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.69%
Rhizosphere SoilHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil0.69%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.69%
Sediment SlurryEngineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry0.69%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000881Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soilEnvironmentalOpen in IMG/M
3300000891Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soilEnvironmentalOpen in IMG/M
3300001661Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)EnvironmentalOpen in IMG/M
3300002121Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1EnvironmentalOpen in IMG/M
3300002899Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)EnvironmentalOpen in IMG/M
3300004020Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D2EnvironmentalOpen in IMG/M
3300004024Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300005172Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132EnvironmentalOpen in IMG/M
3300005178Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137EnvironmentalOpen in IMG/M
3300005295Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3EnvironmentalOpen in IMG/M
3300005343Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaGEnvironmentalOpen in IMG/M
3300005353Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaGHost-AssociatedOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005446Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135EnvironmentalOpen in IMG/M
3300005540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146EnvironmentalOpen in IMG/M
3300005544Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaGEnvironmentalOpen in IMG/M
3300005546Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaGEnvironmentalOpen in IMG/M
3300005577Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2Host-AssociatedOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005843Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2Host-AssociatedOpen in IMG/M
3300005876Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_401EnvironmentalOpen in IMG/M
3300005879Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_301EnvironmentalOpen in IMG/M
3300005880Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_201EnvironmentalOpen in IMG/M
3300006047Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013EnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300006846Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4Host-AssociatedOpen in IMG/M
3300006853Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006880Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3Host-AssociatedOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300006918Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100EnvironmentalOpen in IMG/M
3300006969Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3Host-AssociatedOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300009815Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10EnvironmentalOpen in IMG/M
3300010304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300011441Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT513_2EnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012204Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012354Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012355Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaGEnvironmentalOpen in IMG/M
3300012358Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012907Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1EnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300014883Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT760_16_10DEnvironmentalOpen in IMG/M
3300015052Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015241Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015259Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_10DEnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300017930Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5EnvironmentalOpen in IMG/M
3300017939Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MGEnvironmentalOpen in IMG/M
3300017944Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MGEnvironmentalOpen in IMG/M
3300017961Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MGEnvironmentalOpen in IMG/M
3300018053Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1EnvironmentalOpen in IMG/M
3300018060Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MGEnvironmentalOpen in IMG/M
3300018063Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2EnvironmentalOpen in IMG/M
3300018074Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2EnvironmentalOpen in IMG/M
3300018076Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coexEnvironmentalOpen in IMG/M
3300018077Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1EnvironmentalOpen in IMG/M
3300018084Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1EnvironmentalOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300019487White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaGEnvironmentalOpen in IMG/M
3300020003Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2EnvironmentalOpen in IMG/M
3300020198Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015019 Mahale Deep Cast 65mEnvironmentalOpen in IMG/M
3300021090Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redoEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300022534Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1EnvironmentalOpen in IMG/M
3300022563OV2_combined assemblyEnvironmentalOpen in IMG/M
3300025538Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025938Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026035Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026089Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026285Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026307Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)EnvironmentalOpen in IMG/M
3300026309Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)EnvironmentalOpen in IMG/M
3300026515Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-AEnvironmentalOpen in IMG/M
3300026524Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)EnvironmentalOpen in IMG/M
3300026548Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)EnvironmentalOpen in IMG/M
3300026551Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)EnvironmentalOpen in IMG/M
3300026772Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A2-12 (SPAdes)EnvironmentalOpen in IMG/M
3300027646Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027765Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)EnvironmentalOpen in IMG/M
3300027775Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300028608Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6EnvironmentalOpen in IMG/M
3300028792Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_SEnvironmentalOpen in IMG/M
3300030336Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1EnvironmentalOpen in IMG/M
3300031548Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3Host-AssociatedOpen in IMG/M
3300031681Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20EnvironmentalOpen in IMG/M
3300031736Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21EnvironmentalOpen in IMG/M
3300031832Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25EnvironmentalOpen in IMG/M
3300031858Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2EnvironmentalOpen in IMG/M
3300031944Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032163Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300032893Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1EnvironmentalOpen in IMG/M
3300033412Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NCEnvironmentalOpen in IMG/M
3300033550Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4EnvironmentalOpen in IMG/M
3300033551Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5EnvironmentalOpen in IMG/M
3300034090Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00NEnvironmentalOpen in IMG/M
3300034165Sediment microbial communities from East River floodplain, Colorado, United States - 19_s17EnvironmentalOpen in IMG/M
3300034692Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A1A0.3EngineeredOpen in IMG/M
3300034820Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
INPhiseqgaiiFebDRAFT_10065563423300000364SoilGVLPLKELVASLPANLPLAIEAPCRATADLPALERAQRAYRALADLTGV*
JGI10215J12807_118792013300000881SoilLPIDAPLAIEAPVRAMVHLPALERAQRAYQALSALLGA*
JGI10214J12806_1074714723300000891SoilALPLAVEAPCRATADLPAVERAKRAHQALSALLQSREE*
JGI12053J15887_1050834313300001661Forest SoilGVPLAIEAPCRATANLPALERAKLAYRALTDLTGA*
C687J26615_1009667713300002121SoilLPLAVEAPCGATAALPAVERARRAYRALAALVGA*
JGIcombinedJ43975_1009039823300002899SoilLLPGDGVLPLRELVRALPAGVPLAIEAPVRATGHLPALERAQRAYQALSDLLAG*
Ga0055440_1004497623300004020Natural And Restored WetlandsVLPLAELVAALPEGVPLAIEAPSRVSADLPALERAKRAYRALSTLVTS*
Ga0055436_1016073213300004024Natural And Restored WetlandsLPAGTPLAIEAPCRAHAELPAVERAKRAYQALSTLVSTCGG*
Ga0062589_10129419713300004156SoilLVAALPADLPLAIEAPCRATAELPALERARRAYQALAALSGV*
Ga0066683_1059384913300005172SoilGVLPLAALVAALPPDVPLAIEAPCRATAHLPALERAQRAYRALTALVAPSA*
Ga0066688_1097076723300005178SoilAALPAGAPLAIEAPCRATADLPAPERAKRAFRALSALAGA*
Ga0065707_1050342913300005295Switchgrass RhizosphereLPAGIPLAIEAPSRATADLPALERAKRAYRALSALVGAGAA*
Ga0070687_10133191613300005343Switchgrass RhizosphereDLVAALPPDLPLAIEAPCRATATLSALERARRAYRALTNLTGA*
Ga0070669_10033386613300005353Switchgrass RhizosphereVLPLKELVAALPRSLPLAIEAPCRATAGLPALDRAKRAYRALADLVGA*
Ga0070711_10042900513300005439Corn, Switchgrass And Miscanthus RhizosphereALPDGIPLAIEAPCRATAELPAVERARRAHQALSKLPGIRAA*
Ga0070694_10075758413300005444Corn, Switchgrass And Miscanthus RhizosphereEGVLPLAELVAALPDTAPLAVEAPCRAIADLPALERAKRAHRTLSALVQSATERGHGD*
Ga0066686_1037752933300005446SoilGDGVLPLAELVAALPATAPLAVEAPCRAIADLTPVERAKRAHQALSALLQAG*
Ga0066686_1041023223300005446SoilPLRELVAALPPGVPLAVEAPCRATAQLPAEERAKRAYQALSGLLGAT*
Ga0066697_1000902463300005540SoilAELVAALPAGAPLAIEAPCRATADLPAPERAKRAFRALSALTGA*
Ga0070686_10130093013300005544Switchgrass RhizosphereELVAALPRSLPLAIEAPCRATAGLPALDRAKRAYRALADLVGA*
Ga0070696_10197707213300005546Corn, Switchgrass And Miscanthus RhizospherePLRELVAALPPGLPLAIEAPDRTTAHLPALERAKRAHRALTALLAPA*
Ga0068857_10009215123300005577Corn RhizosphereVLPLAELVAALPDTLPLAVEAPCRATADLPAVERATRAYRALSALLQGREE*
Ga0068859_10015112213300005617Switchgrass RhizosphereAVEAPCRATADLPAVERAKRAHRAISTLLQCREE*
Ga0068860_10173236613300005843Switchgrass RhizosphereGVLPLAELVAALPDGMPLSVEAPCRDTAHLPAAERARRAYRALEALLQTPE*
Ga0075300_103904523300005876Rice Paddy SoilLRELVAALPPGIPLAIEAPCRATAELPAVERAKRAHRALAALVGEARPAR*
Ga0075295_100076943300005879Rice Paddy SoilRELVAALPAGIPLAIEAPCRETADLPAVERGKRAYRALAALVGGARPA*
Ga0075295_102530913300005879Rice Paddy SoilVPLAIEAPCRATADLPASERAKRAYRALSALLAT*
Ga0075298_100337013300005880Rice Paddy SoilPGEGGLLLAELVAALSDGVPLAIEASCRATADLPASERAKRAYRALSALLAT*
Ga0075024_10029576813300006047WatershedsLPAGVPLAIEAPCRATAELPAVERARRAYRALSGLVG*
Ga0066659_1128561913300006797SoilGEGVLPLAALITALPDTVPLAVEAPCRATADLPAVERAKRAYRALTALMPSSA*
Ga0075430_10054387323300006846Populus RhizosphereGVLPLAELVAALPPDVPLAIEAPCRATVNLSALERARRAHRALSSLLAPR*
Ga0075420_10165968113300006853Populus RhizosphereALPPDLPLAIEAPCRATAGLPALERARRAYRALVDLAGA*
Ga0075425_10002435713300006854Populus RhizosphereLPAGAPLAIEAPCRATAELPAPERARRAFRALSALTGA*
Ga0075425_10191661723300006854Populus RhizosphereADLVAALPATAALAVEAPNRATAHLPAVERARRAYQALSALV*
Ga0075429_10144336813300006880Populus RhizosphereKELVAALPADLPLAIEAPCRATLDLPALERAKRAYRALADVAGA*
Ga0068865_10123279013300006881Miscanthus RhizosphereLVAALPPDLPLAIEAPCRATATLSALERARRAYRALTNLTGA*
Ga0079216_1038907713300006918Agricultural SoilLIEALPAGVPLAIESPCRASADLPALERAKRAYRALSALTGA*
Ga0075419_1151486613300006969Populus RhizosphereAELVAALPAGIPLAIEAPSRATADLPALERAKRAYRALSALLAR*
Ga0075435_10131155513300007076Populus RhizosphereLVAALPDTVPLAIEAPCRATADLPAVERAKRAYRALSTLVPSSV*
Ga0099794_1001561753300007265Vadose Zone SoilPLAELVAALPAGVPLAIEAPCRATAELPAVERARRAYRALSGLVG*
Ga0099829_1021965943300009038Vadose Zone SoilLPLEELVAALPAVPLAIEAPCRATAELPGVERAKRAYRTLSALVSRED*
Ga0099828_1181229913300009089Vadose Zone SoilTAPLAVEAPCRATADLPAVERAKRAYQALSRLAL*
Ga0099827_1051483823300009090Vadose Zone SoilGEGVLPLAELVAALPDTVPLAVEAPCRATADLPAVERATRAYQTLSALLRARTE*
Ga0099827_1063506523300009090Vadose Zone SoilPAGVPLAIEAPCRATADLPALERSKRAYRALTALEGA*
Ga0111538_1204601813300009156Populus RhizosphereGVLPLAELVAALPADAALAVEAPCRATAELPALERARRAYRALTGLLASTG*
Ga0105249_1106245243300009553Switchgrass RhizosphereLRDLVAALPPELPLAVEAPSRATADLPAAERARRAYRALGALLETPNH*
Ga0105070_105174623300009815Groundwater SandPDDVPLAIEAPCRATAALPALERAKRAYRALTALQSSR*
Ga0134088_1024488113300010304Grasslands SoilGEGVLPLAELVGLLPPTVPLAIEAPCRATAELPAAERAKRAYRALTALLEKS*
Ga0134088_1049577913300010304Grasslands SoilLIAALPAAAPVAIEAPCRATADLPAVERARRAYRALSKLVL*
Ga0126379_1104631313300010366Tropical Forest SoilLPLAIEAPCRATADLPAVERARRAHRALSALLDTSAR*
Ga0126381_10122819413300010376Tropical Forest SoilAALPDAVPLAVEAPCRATADLPAIERARRAHRSLSALVGAGKA*
Ga0134122_1009052233300010400Terrestrial SoilPPGLPLAIEAPDRTTAHLPAFDRAQRAHRALTALLAPA*
Ga0137391_1039741733300011270Vadose Zone SoilPLRELVAALPAGVPLAIEAPCRSTADLPAVERAKRAYRALSALLTS*
Ga0137452_115335423300011441SoilLVMALPDSVPLAIEAPCRETAHLPALERATRAYRALSTLTGA*
Ga0137389_1149060623300012096Vadose Zone SoilLVAALPAGVPLAIEAPCRATAELPPAERARRAYAALSALVG*
Ga0137374_1007674053300012204Vadose Zone SoilLSLEELVAALPAVPLAIEAPCRATAELPAVERAKRAYRTLSALVSRED*
Ga0137387_1010862733300012349Vadose Zone SoilLPLEELVAALPAVPLAIEAPCRATAELPAVERAKRAYRTLSALVSRED*
Ga0137366_1007179223300012354Vadose Zone SoilALPDAVPLAVEAPCRATADLPAVERARRAHQALSALLSAGKA*
Ga0137369_1029185933300012355Vadose Zone SoilLPLEELVAALPAVPLAIEAPCWATAELPAVERAKRAYRTLSALVSRED*
Ga0137368_1026593343300012358Vadose Zone SoilLPLEELVAALPAVPLAIEALCRATAELPAVERAKRAYRTLSALVSRED*
Ga0137390_1029007423300012363Vadose Zone SoilVAALPAVPLAIEAPCRATAELPGVERAKRAYRTLSALVSRED*
Ga0137390_1195492023300012363Vadose Zone SoilAELVAALPAGVPLAIEAPCRATAELPPVERAKRAYAALSALVG*
Ga0157283_1039303213300012907SoilPDALPLAVEAPCRATADLPAVERAKRAHQALSALLQSLGE*
Ga0137395_1089314223300012917Vadose Zone SoilELVAALPAGLPLAIEAPCRATADLPALERAQRAFRALTDLRGA*
Ga0137394_1011709113300012922Vadose Zone SoilDVPLAIEAPCRATADLPAVERAKRAYRALAGLTGA*
Ga0137394_1037649733300012922Vadose Zone SoilAALPDGIPLAIEAPSRATADLPALERARRAYQALSALLAS*
Ga0137404_1102035013300012929Vadose Zone SoilLAELIAALPAGAPLAIEAPCRATADLPAPERAKRAFRALSALIGA*
Ga0137410_1197132823300012944Vadose Zone SoilAALPATAPLAVEAPCRALADLSPVERAKRAYQALSALLT*
Ga0126375_1120937113300012948Tropical Forest SoilPIAIEAPCRATAELPAAERAKRAYRALTALLEKS*
Ga0126375_1161842323300012948Tropical Forest SoilLPGEGVLPLADLVAMLPADAALAIEAPCRATTDLPAGERARRAYHALSALVGSR*
Ga0163162_1059921223300013306Switchgrass RhizospherePLAELVAALPPAAPVAIEAPCRDTAHLPAVERAKRAYQSLTELLARSHR*
Ga0180086_113119523300014883SoilAELVAALPESAPLAIEAPCRATADLPAIERAKRAYQALSALVERATG*
Ga0137411_132790383300015052Vadose Zone SoilLPLAELVAALPDDVPLAIEAPCRATADLPALERAKRAYQALARLQSSR*
Ga0137418_1039160623300015241Vadose Zone SoilPGLPLAIEAPCRATAELPALERASRAYRALTALLGAS*
Ga0180085_101129043300015259SoilAALPDGVPLAIEAPCRATADLPALGRAKRAYRALSALLTS*
Ga0132258_1111853333300015371Arabidopsis RhizosphereAALPPDLPLAIEAPCRATASLPALERARRAHRALADLTGS*
Ga0163161_1056080823300017792Switchgrass RhizosphereDLVAALPPDLPLAIEAPCRATATLSALERARRAYRALTNLTGA
Ga0187825_1036048723300017930Freshwater SedimentGVPLAIEAPCRATAELPAVERARRAYQALSALVDGVRPA
Ga0187775_1023717123300017939Tropical PeatlandALPLRELVAALPAGLPLAIEAPCRATADLPAVERARRAHRALSALLQPR
Ga0187786_1049669213300017944Tropical PeatlandGALPLRELVAALPAGLPLAIEAPCRATADLPAVERARRAHRALSALLQPR
Ga0187778_1071018113300017961Tropical PeatlandPTVPLAIEAPSRATANLPAVERAKRAYRALSALLQAAHPPVG
Ga0184626_1006825923300018053Groundwater SedimentPLKELVAALPLDVPLAIEAPCRATVDLPAVERAKRAHRALAALAGA
Ga0187765_1050510023300018060Tropical PeatlandDGLPLAIEAPCRETAHLPALERARRAHAALSALVRRETA
Ga0184637_1072897213300018063Groundwater SedimentLAVEAPCRATANLPAVERATRAYQTLSALLRARTE
Ga0184640_1006481033300018074Groundwater SedimentLPLAELVATLPGNVPLAIEAPCRATAELPAVERAKRAYGALSALVSRED
Ga0184609_1010007023300018076Groundwater SedimentLPLEELVAALPAVPLAIEAPCRATAELPAVERAKRAYRTLSALVSRED
Ga0184609_1028710413300018076Groundwater SedimentPLAELVAALPDDLPLAVEAPCRATADLPAVERARRAYRALAVLRQTQTVTRAEDAC
Ga0184633_1045978013300018077Groundwater SedimentLPAAVPLAVEAPCRATADLPAVERATRAYQALSALLLARTE
Ga0184629_1027037923300018084Groundwater SedimentLPLRELVAALPAGVPLAIEAPCRATADLPAVERAKRAYQALSALLTS
Ga0190265_1243861313300018422SoilLAELVASLPPDVPLAIEAPCRATAELPALERAKRAYRALTALTVSV
Ga0066667_1043275923300018433Grasslands SoilGEGVLPLAALITALPDTVPLAVEAPCRATADLPAVERAKRAYRALTALMPSSA
Ga0066669_1021156413300018482Grasslands SoilPATVPLAIEAPNRATADLPAVERAKRAYRALAALTGA
Ga0066669_1051321123300018482Grasslands SoilLRELVAALPPGLPLAIEAPCRATAERPALERASRAYRALTALLGAS
Ga0187893_1058542133300019487Microbial Mat On RocksPRELVAALPPGVPLAIEAPCRATADLPALERARRAYQALSALVAS
Ga0193739_103468613300020003SoilVLPLRELVAALPAGIPLAIEAPCRSTADLPAVERAKRAYRALSALLTS
Ga0194120_1000447513300020198Freshwater LakeRALVAALPADAPLAIEAPCRDTAGLPALERAKRAYRALTALVA
Ga0210377_1049573133300021090Groundwater SedimentVAALPAGVPLAIEAPCRATADLPAVERAKRAYQALSTLLSTCSV
Ga0210400_1047867413300021170SoilAALPDGIPLAIEAPCRATAELPAVERARRAHQALSKLPGIRAA
Ga0210396_1083109713300021180SoilLAELVAALPDGIPLAIEAPCRATAELPAVERARRAHQALSKLPGIRAA
Ga0210394_1129095113300021420SoilVLPLTELVAALPAGVPLAIEAPSRATVELPALERARRAYRAMSALVGAGSV
Ga0224452_110539213300022534Groundwater SedimentLPLEELVAALPAVPLAIEAPCRATAELPAVERAKRAYRTLSALVSREG
Ga0212128_1080129623300022563Thermal SpringsAGAPLAVEAPRRATAHLPAVERATRAYRALAALSPG
Ga0210132_104146513300025538Natural And Restored WetlandsLPLAELVAALPEGVPLAIEAPSRVSADLPALERAKRAYRALSTLVTS
Ga0210132_105281023300025538Natural And Restored WetlandsPAGTPLAIEAPCRAHAELPAVERAKRAYQALSTLVSTCGG
Ga0207704_1118226923300025938Miscanthus RhizosphereLVAALPPDLPLAIEAPCRATATLSALERARRAYRALTNLTGA
Ga0207703_1050893013300026035Switchgrass RhizosphereLPLAELVAALPDALPLAVEAPCRATADLPAVERAKRAHQALSALLQSREE
Ga0207648_1185626113300026089Miscanthus RhizospherePRSLPLAIEAPCRATAGLPALDRAKRAYRALADLVGA
Ga0209438_120964823300026285Grasslands SoilALPDGIPLAIEAPSRATADLPALERARRAYQALSALLAS
Ga0209469_104377133300026307SoilLPATAPLAVEAPCRALADLLPVERAKRAYQALSALLT
Ga0209055_118893923300026309SoilGELVAALPAGLPLAIEAPCRATADLPALERARRAYRALSALGGA
Ga0257158_104955513300026515SoilAELVAALPAGVPLAIEAPCRATAELPAVERARRAYAALSTLVG
Ga0209690_126781013300026524SoilLPLAELVAALPAGAPLAIEAPCRATADLPAPERAKRAFRALSALTGA
Ga0209161_1021569213300026548SoilAELVAALPAGAPLAIEAPCRATADLPAPERAKRAFRALSALTGA
Ga0209648_1032337413300026551Grasslands SoilSAPLAIEAPCRATADLPAVERAKRAYRALSVLVGDCGSS
Ga0207596_10323423300026772SoilLPSDVPLAIEAPVRAMAHLPALERAQRAYQALSALLGA
Ga0209466_104466013300027646Tropical Forest SoilLPLAELVAALPAGAPLAIEAPSRATANLPALERATRAYRALTSLAGA
Ga0209073_1011197013300027765Agricultural SoilLRELVAALPAGIPLAIEAPVRATAALPPLERARRAHRALTALLDQGSR
Ga0209073_1011533313300027765Agricultural SoilELVAALPAGVPLAIEAPCRATAELPAVERATRAYRALSALVGGGAPRPSG
Ga0209177_1000138013300027775Agricultural SoilALPLRELVAALPAGIPLAIEAPVRATAALPPLERARRAHRALAALLDQGSR
Ga0209177_1041844813300027775Agricultural SoilPLAIEAPCRATAELPALERARHAYQALSKLPGIREA
Ga0209180_1014636043300027846Vadose Zone SoilLPLEELVAALPAVPLAIEAPCRATAELPGVERAKRAYRTLSALVSRED
Ga0247819_1008021823300028608SoilAALPPDLPLAIEAPCRATASLPALERARRAHRALADLTGS
Ga0307504_1019709523300028792SoilVAALPAGVPLAIEAPCRATADLPALERAKRAFLALTALRGA
Ga0247826_1132034313300030336SoilPADLPLAIEAPCRATAELPALERAQRAHQTLATLIGA
Ga0307408_10243212323300031548RhizosphereDLVAALPAGVPLAIEAPSRATANLPALERATRAYRSLTALLDAC
Ga0318572_1014733733300031681SoilEGVLPLRDLVAALPPGLPLAIEAPCRATAALPALERAKRAYRALATLTGA
Ga0318501_1057966323300031736SoilAGAPLAIEAPCRATADLPALERAKRAYRALTSLAGA
Ga0318499_1014459313300031832SoilAELIAALPAGAPLAIEAPCRATADLPALERAKRAYRALTSLAGA
Ga0310892_1030946323300031858SoilLKDLVAALPPDLPLAIEAPSRATATLSALERARRAYRALTNLTGA
Ga0310884_1078223023300031944SoilLPLKELVAALPPDLPLAIEAPCRATASLPALERARRAHRALADLTGS
Ga0306922_1033401443300032001SoilPPGLPLAIEAPCRATAALPALERAKRAYRALATLTGA
Ga0315281_1090907233300032163SedimentAALPAGVPLAIEAPCRALADLPAVERAKRAYQALSTLLSPCRG
Ga0307471_10413729913300032180Hardwood Forest SoilLPLAELVAALPSGVPIAIEAPCRATAELPAAERAKRAYRALTALLEKS
Ga0307472_10229657323300032205Hardwood Forest SoilAALPPGVPLAIEAPCRATAELPAVERARRAYRALSGLVG
Ga0306920_10229242623300032261SoilRELVAALPPGLPLAIEAPCRATAALAALERAKRAYRALTTLTGA
Ga0335069_1276471613300032893SoilAALPPGVPLAVEAPSRATAELPAVERAKRAHRAMSALLEGRSA
Ga0310810_1106832313300033412SoilVAALPPGLPLAIEAPDRTTAHLPALERAKRAHRALTALLAPA
Ga0247829_1051753513300033550SoilVLPLAELVAALPAGIPLAIEAPSRATADLPALERAQRAYRALSALIGAGSA
Ga0247830_1115954413300033551SoilVLPLPELVAALPAGVPLAIEAPCRATAHLPALERARRAYQALSTLTGA
Ga0326723_0564237_326_4633300034090Peat SoilVAALPAGVPLAIEAPCRATAELPAVERAKRAYRALSALVGGAGPG
Ga0364942_0205295_3_1583300034165SedimentVLPLRELVAALPAGVPLAIEAPCRALADLPAVERAKRAYQALSTLLSTCRG
Ga0364942_0243544_36_1883300034165SedimentLPLAELVAVLPDTVPLAVEAPCRATAHLTAVERATRAYRTLSALLLARTE
Ga0373917_0069051_449_5653300034692Sediment SlurryLPPDLPLAIEAPCRATAELPALERATRAHRTLSTLIGA
Ga0373959_0083622_2_1363300034820Rhizosphere SoilVAALPAGIPLAIEAPVRATAALPPLERARRAHRALTALLDQGSR


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