Metagenome / Metatranscriptome Family F052227

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F052227
Family Type	Metagenome / Metatranscriptome
Number of Sequences	143
Average Sequence Length	43 residues
Representative Sequence	ALEQLRQRGVEVETLPTDEAVRRYGELDPRRTAAALHLTC
Number of Associated Samples	115
Number of Associated Scaffolds	143

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	4.93 %
% of genes near scaffold ends (potentially truncated)	86.01 %
% of genes from short scaffolds (< 2000 bps)	88.11 %
Associated GOLD sequencing projects	113
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.63

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (76.224 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (15.385 % of family members)
Environment Ontology (ENVO)	Unclassified (36.364 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (41.259 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 23.53% β-sheet: 0.00% Coil/Unstructured: 76.47%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.63
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.63
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 143 Family Scaffolds
PF04430	DUF498	27.27
PF01161	PBP	9.79
PF07883	Cupin_2	6.29
PF00817	IMS	5.59
PF01329	Pterin_4a	4.20
PF13417	GST_N_3	3.50
PF00582	Usp	2.10
PF00300	His_Phos_1	2.10
PF13472	Lipase_GDSL_2	1.40
PF03266	NTPase_1	1.40
PF07478	Dala_Dala_lig_C	1.40
PF02353	CMAS	1.40
PF13188	PAS_8	1.40
PF04493	Endonuclease_5	0.70
PF01609	DDE_Tnp_1	0.70
PF01361	Tautomerase	0.70
PF08327	AHSA1	0.70
PF12728	HTH_17	0.70
PF11799	IMS_C	0.70
PF12146	Hydrolase_4	0.70
PF01850	PIN	0.70
PF00067	p450	0.70
PF04008	Adenosine_kin	0.70
PF03098	An_peroxidase	0.70
PF13478	XdhC_C	0.70
PF09922	DUF2154	0.70
PF00296	Bac_luciferase	0.70
PF00462	Glutaredoxin	0.70
PF13407	Peripla_BP_4	0.70
PF00069	Pkinase	0.70
PF01548	DEDD_Tnp_IS110	0.70
PF12697	Abhydrolase_6	0.70
PF07690	MFS_1	0.70
PF13684	Dak1_2	0.70
PF09587	PGA_cap	0.70
PF03807	F420_oxidored	0.70
PF08843	AbiEii	0.70
PF12229	PG_binding_4	0.70
PF04055	Radical_SAM	0.70
PF13483	Lactamase_B_3	0.70

COG ID	Name	Functional Category	% Frequency in 143 Family Scaffolds
COG1504	Uncharacterized conserved protein, DUF498 domain	Function unknown [S]	27.27
COG3737	Uncharacterized protein, contains Mth938-like domain	Function unknown [S]	27.27
COG1881	Uncharacterized conserved protein, phosphatidylethanolamine-binding protein (PEBP) family	General function prediction only [R]	9.79
COG0389	Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair	Replication, recombination and repair [L]	5.59
COG2154	Pterin-4a-carbinolamine dehydratase	Coenzyme transport and metabolism [H]	4.20
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	2.80
COG1618	Nucleoside-triphosphatase THEP1	Nucleotide transport and metabolism [F]	1.40
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	1.40
COG2227	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase	Coenzyme transport and metabolism [H]	1.40
COG2230	Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases	Lipid transport and metabolism [I]	1.40
COG1515	Deoxyinosine 3'-endonuclease (endonuclease V)	Replication, recombination and repair [L]	0.70
COG1839	Adenosine/AMP kinase	Nucleotide transport and metabolism [F]	0.70
COG1942	Phenylpyruvate tautomerase PptA, 4-oxalocrotonate tautomerase family	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.70
COG2124	Cytochrome P450	Defense mechanisms [V]	0.70
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.70
COG2253	Predicted nucleotidyltransferase component of viral defense system	Defense mechanisms [V]	0.70
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.70
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.70
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.70
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.70
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.70
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.70
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.70

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	76.92 %
Unclassified	root	N/A	23.08 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	76.92 %
Unclassified	root	N/A	23.08 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	76.22 %
Unclassified	root	N/A	23.08 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.70 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	41.96 %
Unclassified	root	N/A	23.08 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.40 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.70 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	41.26 %
Unclassified	root	N/A	23.08 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1.40 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.08 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	12.59 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	2.10 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	1.40 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.08 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	4.90 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2.10 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	2.10 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	1.40 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.70 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.08 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.90 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	1.40 %
Propionibacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae	1.40 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	1.40 %
Conexibacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae	0.70 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.70 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.08 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.90 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	1.40 %
unclassified Planctomycetaceae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae	1.40 %
Microlunatus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus	1.40 %
Conexibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter	0.70 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.70 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.08 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.90 %
Microlunatus endophyticus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus → Microlunatus endophyticus	1.40 %
Planctomycetaceae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	1.40 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	0.70 %
Conexibacter woesei	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	0.70 %
Actinomadura madurae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura madurae	0.70 %
unclassified Solirubrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter	0.70 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.08 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.90 %
Microlunatus endophyticus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus → Microlunatus endophyticus	1.40 %
Planctomycetaceae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	1.40 %
Solirubrobacter sp. URHD0082	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	0.70 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	0.70 %
Conexibacter woesei	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	0.70 %
Actinomadura madurae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura madurae	0.70 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.70 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000878\|AL9A1W_1014138	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1178	Open in IMG/M
3300000956\|JGI10216J12902_101443833	Not Available	1204	Open in IMG/M
3300002568\|C688J35102_120880444	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	1986	Open in IMG/M
3300003373\|JGI25407J50210_10002386	All Organisms → cellular organisms → Bacteria	4420	Open in IMG/M
3300003373\|JGI25407J50210_10147740	Not Available	579	Open in IMG/M
3300003465\|P52013CM_1028342	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	1624	Open in IMG/M
3300004157\|Ga0062590_102537657	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300004480\|Ga0062592_101221684	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	704	Open in IMG/M
3300005093\|Ga0062594_101426271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	705	Open in IMG/M
3300005162\|Ga0066814_10031120	All Organisms → cellular organisms → Bacteria	800	Open in IMG/M
3300005167\|Ga0066672_10611747	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	706	Open in IMG/M
3300005171\|Ga0066677_10762353	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300005172\|Ga0066683_10183366	All Organisms → cellular organisms → Bacteria	1291	Open in IMG/M
3300005186\|Ga0066676_10268783	Not Available	1119	Open in IMG/M
3300005187\|Ga0066675_11100639	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	593	Open in IMG/M
3300005329\|Ga0070683_101923236	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300005332\|Ga0066388_100192832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2654	Open in IMG/M
3300005345\|Ga0070692_10952496	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	597	Open in IMG/M
3300005445\|Ga0070708_101157576	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	724	Open in IMG/M
3300005456\|Ga0070678_101867778	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300005555\|Ga0066692_10895180	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	544	Open in IMG/M
3300005556\|Ga0066707_10964430	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300005574\|Ga0066694_10320740	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300005981\|Ga0081538_10334562	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	550	Open in IMG/M
3300006032\|Ga0066696_10859697	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	578	Open in IMG/M
3300006163\|Ga0070715_10313257	Not Available	844	Open in IMG/M
3300006796\|Ga0066665_10669845	Not Available	824	Open in IMG/M
3300006804\|Ga0079221_10388347	All Organisms → cellular organisms → Bacteria	860	Open in IMG/M
3300006871\|Ga0075434_100393236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1407	Open in IMG/M
3300006918\|Ga0079216_11868696	Not Available	518	Open in IMG/M
3300009012\|Ga0066710_102937171	Not Available	667	Open in IMG/M
3300009012\|Ga0066710_103522451	Not Available	592	Open in IMG/M
3300009100\|Ga0075418_12138060	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	610	Open in IMG/M
3300009101\|Ga0105247_10517572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	872	Open in IMG/M
3300009817\|Ga0105062_1060004	Not Available	708	Open in IMG/M
3300009840\|Ga0126313_10071662	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2491	Open in IMG/M
3300009840\|Ga0126313_10703490	All Organisms → cellular organisms → Bacteria	819	Open in IMG/M
3300009840\|Ga0126313_10775431	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300009840\|Ga0126313_11387335	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300010041\|Ga0126312_10039310	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3159	Open in IMG/M
3300010041\|Ga0126312_10143544	All Organisms → cellular organisms → Bacteria	1654	Open in IMG/M
3300010044\|Ga0126310_10021585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3234	Open in IMG/M
3300010166\|Ga0126306_10228347	Not Available	1414	Open in IMG/M
3300010166\|Ga0126306_10400596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1073	Open in IMG/M
3300010326\|Ga0134065_10126210	All Organisms → cellular organisms → Bacteria	873	Open in IMG/M
3300010329\|Ga0134111_10441922	Not Available	563	Open in IMG/M
3300010333\|Ga0134080_10389400	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300010335\|Ga0134063_10403653	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300010335\|Ga0134063_10415270	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300010400\|Ga0134122_11110237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	784	Open in IMG/M
3300012201\|Ga0137365_10444643	All Organisms → cellular organisms → Bacteria	954	Open in IMG/M
3300012204\|Ga0137374_10030077	All Organisms → cellular organisms → Bacteria	5957	Open in IMG/M
3300012204\|Ga0137374_10755530	All Organisms → cellular organisms → Bacteria	725	Open in IMG/M
3300012204\|Ga0137374_11066736	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300012204\|Ga0137374_11248011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	517	Open in IMG/M
3300012206\|Ga0137380_10917357	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	752	Open in IMG/M
3300012208\|Ga0137376_11179100	Not Available	655	Open in IMG/M
3300012210\|Ga0137378_11201312	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300012210\|Ga0137378_11852159	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300012350\|Ga0137372_11125296	Not Available	537	Open in IMG/M
3300012353\|Ga0137367_10014218	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6321	Open in IMG/M
3300012353\|Ga0137367_10692718	Not Available	710	Open in IMG/M
3300012353\|Ga0137367_10874324	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300012355\|Ga0137369_10014137	All Organisms → cellular organisms → Bacteria	7737	Open in IMG/M
3300012355\|Ga0137369_10324823	All Organisms → cellular organisms → Bacteria	1132	Open in IMG/M
3300012355\|Ga0137369_10452278	Not Available	916	Open in IMG/M
3300012355\|Ga0137369_10563626	All Organisms → cellular organisms → Bacteria	797	Open in IMG/M
3300012357\|Ga0137384_11202356	Not Available	603	Open in IMG/M
3300012359\|Ga0137385_11265061	Not Available	600	Open in IMG/M
3300012360\|Ga0137375_10578995	Not Available	939	Open in IMG/M
3300012388\|Ga0134031_1014828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	568	Open in IMG/M
3300012532\|Ga0137373_10100432	All Organisms → cellular organisms → Bacteria	2532	Open in IMG/M
3300012532\|Ga0137373_10168801	All Organisms → cellular organisms → Bacteria	1830	Open in IMG/M
3300012958\|Ga0164299_10858568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	654	Open in IMG/M
3300012972\|Ga0134077_10167714	Not Available	882	Open in IMG/M
3300013297\|Ga0157378_11697740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	678	Open in IMG/M
3300014149\|Ga0181613_1116288	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300014326\|Ga0157380_12491334	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	583	Open in IMG/M
3300015374\|Ga0132255_103038266	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	716	Open in IMG/M
3300016341\|Ga0182035_10985716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	746	Open in IMG/M
3300017654\|Ga0134069_1172165	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M
3300017657\|Ga0134074_1177555	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	751	Open in IMG/M
3300017965\|Ga0190266_10402848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	760	Open in IMG/M
3300018027\|Ga0184605_10035923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2065	Open in IMG/M
3300018063\|Ga0184637_10344899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	896	Open in IMG/M
3300018081\|Ga0184625_10130202	All Organisms → cellular organisms → Bacteria	1310	Open in IMG/M
3300018433\|Ga0066667_11238144	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300018433\|Ga0066667_11331041	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	628	Open in IMG/M
3300018433\|Ga0066667_11581341	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	583	Open in IMG/M
3300018469\|Ga0190270_10472166	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	1186	Open in IMG/M
3300018469\|Ga0190270_13205902	All Organisms → cellular organisms → Archaea	518	Open in IMG/M
3300018482\|Ga0066669_10866347	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura madurae	805	Open in IMG/M
3300018482\|Ga0066669_12251459	Not Available	518	Open in IMG/M
3300019767\|Ga0190267_11083297	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	573	Open in IMG/M
3300022756\|Ga0222622_10737924	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	717	Open in IMG/M
3300025094\|Ga0209478_1007348	All Organisms → cellular organisms → Bacteria	3412	Open in IMG/M
3300025167\|Ga0209642_10608579	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300025174\|Ga0209324_10614280	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300025922\|Ga0207646_10734721	All Organisms → cellular organisms → Bacteria	881	Open in IMG/M
3300025933\|Ga0207706_10321652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1346	Open in IMG/M
3300025949\|Ga0207667_10943968	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	852	Open in IMG/M
3300026020\|Ga0208531_1021926	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	579	Open in IMG/M
3300026041\|Ga0207639_10535420	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1074	Open in IMG/M
3300026044\|Ga0208287_1023366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	566	Open in IMG/M
3300027163\|Ga0209878_1041924	All Organisms → cellular organisms → Bacteria → Terrabacteria group	585	Open in IMG/M
3300027577\|Ga0209874_1089014	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300028578\|Ga0272482_10045736	Not Available	1150	Open in IMG/M
3300028587\|Ga0247828_11211711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	506	Open in IMG/M
3300028707\|Ga0307291_1070946	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	852	Open in IMG/M
3300028875\|Ga0307289_10342335	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	615	Open in IMG/M
3300028878\|Ga0307278_10001246	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	12697	Open in IMG/M
3300028880\|Ga0307300_10243686	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	594	Open in IMG/M
3300028884\|Ga0307308_10444150	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	622	Open in IMG/M
3300030006\|Ga0299907_11307495	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300031091\|Ga0308201_10353751	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	539	Open in IMG/M
3300031682\|Ga0318560_10024602	All Organisms → cellular organisms → Bacteria	2794	Open in IMG/M
3300031731\|Ga0307405_11730318	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300031824\|Ga0307413_10010477	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4500	Open in IMG/M
3300031852\|Ga0307410_12063255	Not Available	509	Open in IMG/M
3300031901\|Ga0307406_10837538	Not Available	779	Open in IMG/M
3300031911\|Ga0307412_10125812	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1854	Open in IMG/M
3300031911\|Ga0307412_12180768	Not Available	515	Open in IMG/M
3300031947\|Ga0310909_10797669	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300031995\|Ga0307409_100832460	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus → Microlunatus endophyticus	932	Open in IMG/M
3300031995\|Ga0307409_102102977	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	594	Open in IMG/M
3300032002\|Ga0307416_102981054	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus → Microlunatus endophyticus	566	Open in IMG/M
3300032004\|Ga0307414_11745261	Not Available	581	Open in IMG/M
3300032005\|Ga0307411_10477146	All Organisms → cellular organisms → Bacteria	1049	Open in IMG/M
3300032126\|Ga0307415_100000620	All Organisms → cellular organisms → Bacteria	15552	Open in IMG/M
3300032126\|Ga0307415_100580123	Not Available	994	Open in IMG/M
3300032126\|Ga0307415_102476685	Not Available	511	Open in IMG/M
3300032159\|Ga0268251_10214366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	761	Open in IMG/M
3300032159\|Ga0268251_10461355	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	562	Open in IMG/M
3300032261\|Ga0306920_104299579	Not Available	512	Open in IMG/M
3300032770\|Ga0335085_10030240	All Organisms → cellular organisms → Bacteria	7560	Open in IMG/M
3300032783\|Ga0335079_10307445	Not Available	1729	Open in IMG/M
3300032892\|Ga0335081_12710156	Not Available	505	Open in IMG/M
3300033158\|Ga0335077_10843031	Not Available	929	Open in IMG/M
3300033290\|Ga0318519_10559903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	692	Open in IMG/M
3300033805\|Ga0314864_0026809	Not Available	1232	Open in IMG/M
3300033812\|Ga0364926_084063	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300034174\|Ga0334932_025566	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	996	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	79.72%
Host-Associated	Host-Associated	20.28%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.52%
Plants	Host-Associated → Plants	20.28%
Aquatic	Environmental → Aquatic	4.20%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	74.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.99%
Sediment	Environmental → Aquatic → Sediment	2.80%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.80%
Roots	Host-Associated → Plants → Roots	2.10%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.40%
Phylloplane	Host-Associated → Plants → Phylloplane	1.40%
Floodplain	Environmental → Terrestrial → Floodplain	0.70%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	61.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.29%
Loam	Environmental → Terrestrial → Soil → Loam	6.29%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.80%
Sand	Environmental → Terrestrial → Soil → Sand	2.10%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.10%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.40%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	1.40%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.70%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	0.70%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.70%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.70%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.70%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	39.16%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.29%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.89%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.90%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.50%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.80%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.10%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	2.10%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.40%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.40%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	1.40%
Neutral	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Neutral	0.70%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	0.70%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.70%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	0.70%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.70%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.70%
Mine Drainage	Environmental → Terrestrial → Soil → Unclassified → Mine Drainage	0.70%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.70%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.70%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.70%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	15.38%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	9.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.09%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	6.29%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	6.29%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.99%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.90%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.80%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.10%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	2.10%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	2.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.40%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.40%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.40%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.40%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.40%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.40%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	1.40%
Anoxic, Neutral-Ph, Fe/Si-Rich Hot Spring Water	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Neutral → Anoxic, Neutral-Ph, Fe/Si-Rich Hot Spring Water	0.70%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	0.70%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.70%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.70%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.70%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	0.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.70%
Ore Pile And Mine Drainage Contaminated Soil	Environmental → Terrestrial → Soil → Unclassified → Mine Drainage → Ore Pile And Mine Drainage Contaminated Soil	0.70%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.70%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.70%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.70%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.70%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.70%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.70%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.70%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.70%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.70%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000878	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-5 cm-9A)- 1 week illumina	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300003465	Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P5 sample	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009817	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012388	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014149	In situ water column microbial community from the vent pool of Chocolate Pots hot spring, Yellowstone National Park, Wyoming, USA - CP Vent Pool	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025094	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Dewar Creek DC8 2012 metaG (SPAdes)	Environmental	Open in IMG/M
3300025167	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_2 (SPAdes)	Environmental	Open in IMG/M
3300025174	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 3	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026020	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_403 (SPAdes)	Environmental	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026044	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D1 (SPAdes)	Environmental	Open in IMG/M
3300027163	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_40_50 (SPAdes)	Environmental	Open in IMG/M
3300027577	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30 (SPAdes)	Environmental	Open in IMG/M
3300028578	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT160D0	Environmental	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300033805	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_10	Environmental	Open in IMG/M
3300033812	Sediment microbial communities from East River floodplain, Colorado, United States - 65_j17	Environmental	Open in IMG/M
3300034174	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 28HNS	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AL9A1W_10141382	3300000878	Permafrost	GQLQPDPKTISRLRERGVEVEALPTEEAVRRYGELDPRRTAAALHLAC*
JGI10216J12902_1014438333	3300000956	Soil	QMRPDPATLERLSERGVEVECLPTDRAVSRFGELDPARTAAALHLTC*
C688J35102_1208804445	3300002568	Soil	GRMRPEPGALEALQARGVEVEVLPTAEAVTRYAELDPKTTAAALHLTC*
JGI25407J50210_100023862	3300003373	Tabebuia Heterophylla Rhizosphere	MRPDPDTIRQLQERGVTVETLPTDQAVRRFAELDPAHVAAALHLTC*
JGI25407J50210_101477401	3300003373	Tabebuia Heterophylla Rhizosphere	VLEELERRGIDVEVLHTDDAVRRYGELDERRTAAALHLTC*
P52013CM_10283424	3300003465	Ore Pile And Mine Drainage Contaminated Soil	AMLDALAAGGIRVEVLPTAEAVRRYGETDPERTAAALHLTC*
Ga0062590_1025376571	3300004157	Soil	LETLRARGVEVEVLPTDEAVTRYAELDPGTTAAALHLTC*
Ga0062592_1012216841	3300004480	Soil	QGQLRPDPAVIEALERQGIEVVAVPTDEAVRRYGESDERQTAAALHLTC*
Ga0062594_1014262711	3300005093	Soil	MRPDPDVLDLLKERGVEVECLPTDRAVARFAELDPATTAAALHLTC*
Ga0066814_100311202	3300005162	Soil	PGTIETLRARGVDVEVLPTAAAVERYAELDPRRTAAALHLTC*
Ga0066672_106117472	3300005167	Soil	DARALESLRTRGIEVEVMPTADGVRRYGELDEREAAAALHLTC*
Ga0066677_107623532	3300005171	Soil	EALEQLRQRGVEVEALPTDEAVRRYGELDPRRMAAALHLTC*
Ga0066683_101833661	3300005172	Soil	EGLEQLRQRGVEVEALPTGEAVRRYGELDPRRTAAALHLTC*
Ga0066676_102687831	3300005186	Soil	PDPDVLDRLGERGVQVECLPTDRAVARFAELNPAETAAALHLTC*
Ga0066675_111006392	3300005187	Soil	PDPDALRALAKRGIQVEVLRTGDAVRRYGELDEARTAAAIHLTC*
Ga0070683_1019232361	3300005329	Corn Rhizosphere	AYGRLRPDPGTIESLRGRGIDVEVLPTAEAVDRYAELDPRTTAAALHLTC*
Ga0066388_1001928321	3300005332	Tropical Forest Soil	MRPDPGALEALRGRGVEVEVLPTAEAVRRYAQLDPRKTAAALHPTC*
Ga0070692_109524962	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	VIEALERQGIEVVAVPTDEAVRRYGESDERNTAAALHLTC*
Ga0070708_1011575761	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	LDRLRDRGIDVECLPTDRAVKRFSELDPATTAAALHLTC*
Ga0070678_1018677781	3300005456	Miscanthus Rhizosphere	DPGTIEALRGRGIDVEVLRTAAAVDRYAELDPQTTAAALHLTC*
Ga0066692_108951802	3300005555	Soil	PDPAVIEALERRGVTVECLPTDAAVRRYGELDERSTAAALHLTC*
Ga0066707_109644302	3300005556	Soil	EQLRQRGVEVESLPTNEAVRRYCELDPRRTAAALHLTC*
Ga0066694_103207403	3300005574	Soil	ALEQLRQRGVEVETLPTDEAVRRYGELDPRRTAAALHLTC*
Ga0081538_103345622	3300005981	Tabebuia Heterophylla Rhizosphere	GRLEPPRAVLEQLRARGVEVEAMPTAEAVRRYGELDPQRTAAALHLTC*
Ga0066696_108596972	3300006032	Soil	PDPAVIAELERRRVQVECLPTDAAVRRYCELDGRTTAAALHLTC*
Ga0070715_103132572	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	LQERGVEVECLPTDRAVVRFAELDPAETAAALHLTC*
Ga0066665_106698452	3300006796	Soil	ERGVDVEVMRTDDAVRRYSELDPARTAAALHLTC*
Ga0079221_103883471	3300006804	Agricultural Soil	GTIETLRGRGIDVEMLPTAAAVDRYAELDPQTTAAALHLTC*
Ga0075434_1003932362	3300006871	Populus Rhizosphere	MQERGIDLEMLPTETVRHYGELDEHRTAAALHLTC*
Ga0079216_118686962	3300006918	Agricultural Soil	PAPVLQELERRGIDVEVLHTGDAVRRYGELDERRTAAALHLTC*
Ga0066710_1029371712	3300009012	Grasslands Soil	DPGTLRRLRERGVEVECLPTTRAVARFRELDPTTTAAALHLTC
Ga0066710_1035224513	3300009012	Grasslands Soil	AYGRLRPEPGALDELRARGVEVESLPAADAVERYGLLDETRTAAALHLTC
Ga0075418_121380601	3300009100	Populus Rhizosphere	RRGIDVAVLQTAEAVRRYGDLDERRTAAALHLTC*
Ga0105247_105175723	3300009101	Switchgrass Rhizosphere	ALRGRGIDVEVLRTAAAVDRYAELDPQTTAAALHLTC*
Ga0105062_10600041	3300009817	Groundwater Sand	RMRPDPGALETLRARGVDVEVLPTADAVQRYAQLDPKRTAAALHLTC*
Ga0126313_100716622	3300009840	Serpentine Soil	MRPDPDTVLQLQRGVTVEALPTGQAVRRFGELDPARAAAALHLTC*
Ga0126313_107034901	3300009840	Serpentine Soil	RMRPDPKMVQQLQERRVTVEALPNGQAARRFAELDPAGTAAALHLTC*
Ga0126313_107754313	3300009840	Serpentine Soil	DPAVLAALERRGVQVECLPTDAAVRRYGELDERRTAAALHLTC*
Ga0126313_113873351	3300009840	Serpentine Soil	RPDSEALNELRQRGVEVEALPTDEAVRRYGELDPRRTAAALHLTC*
Ga0126312_100393106	3300010041	Serpentine Soil	RGGIEVEALATADAVRRYTELDPHRTAAALHLTC*
Ga0126312_101435445	3300010041	Serpentine Soil	DPEALEQLRQRGVEVEALPTGEAIQRYGELDPRRTAAALHLTC*
Ga0126310_100215855	3300010044	Serpentine Soil	ERRHVQVECLSTRAAVRRYGELDERTTAAALHLTC*
Ga0126306_102283471	3300010166	Serpentine Soil	RAVIEELERRGIDVEVLQTDDAVRRYGDLDERRTAAALHLTC*
Ga0126306_104005962	3300010166	Serpentine Soil	AVIAELERRRVQVECLPTDAAVRRYGELDERTTAAALHLTC*
Ga0134065_101262101	3300010326	Grasslands Soil	YGQMRPDPEALEELRLRGVEVEALPMDESVRRYGELAPRRTAGALHLTC*
Ga0134111_104419221	3300010329	Grasslands Soil	DPRALDALHAKGIEVEVLPTDDAVRRYVELDPNRTAAALHLTC*
Ga0134080_103894002	3300010333	Grasslands Soil	EALEQLRQRGVEVEALPTGEAVRRYRELDPRRTAAALHLTC*
Ga0134063_104036533	3300010335	Grasslands Soil	LHPDPAALESLRERGVEVEVLPTAEAVSRYGELDPRRTAAALHLTC*
Ga0134063_104152701	3300010335	Grasslands Soil	LEQLRQRGVEIETLPTGDAVRRYGELDPRRTAAALHLTC*
Ga0134122_111102371	3300010400	Terrestrial Soil	TIETLRGRGIDVEVLRTAAAVDRYAELDPQTTAAALHLTC*
Ga0137365_104446433	3300012201	Vadose Zone Soil	QMRPDPEAVEQLRQRGVEVEALPTGEAVHRYGELDPRRTAAALHLTC*
Ga0137374_100300773	3300012204	Vadose Zone Soil	MGGCDPDPQLSECLRERGVEVEALPTAAAIRRYGELDPRCAAAALHLTC*
Ga0137374_107555303	3300012204	Vadose Zone Soil	ERLRQRGVEVDALPTGEAVRRYGELDSHRTAAALHLTC*
Ga0137374_110667362	3300012204	Vadose Zone Soil	GQLQPDPKTIDQLRERGVEVESLPTEQAVQRYAELDPSRTAAALHLTC*
Ga0137374_112480111	3300012204	Vadose Zone Soil	PDPRTLAELRARGIDVEVLPTAEAVARYGVLDSTRTAAALHLTC*
Ga0137380_109173572	3300012206	Vadose Zone Soil	LRPDGETLDGLRQPGVEVEALPTAEAVRRYGELDPRRTAAALHLTC*
Ga0137376_111791002	3300012208	Vadose Zone Soil	RPDPGTVETLRARGVEVEVLPTAEAVQRYAQLDPRKTAAALHLTC*
Ga0137378_112013121	3300012210	Vadose Zone Soil	PEALEQLQQRGVEVEALPTDEAVRRYGELDPRRTAAALHLTC*
Ga0137378_118521592	3300012210	Vadose Zone Soil	MRPEPETLERRRERGIELETLPTGDAVRRYGELDPRGTAAAIHLTC*
Ga0137372_111252963	3300012350	Vadose Zone Soil	GALDELRARGVDVQVLPTDHAVDRYGELDPGRTAAALHLTC*
Ga0137367_100142189	3300012353	Vadose Zone Soil	EQLRERGVDVEALPTDEAVRRYGELDPRRTAAALHLTC*
Ga0137367_106927183	3300012353	Vadose Zone Soil	MQPDPEAVERLRQRGVEVEALPTGEAVRRYGELDPRRTAAALHLTC*
Ga0137367_108743241	3300012353	Vadose Zone Soil	EHEALEQLRERGIEVEALPTAEAVRRYAGLDPRRTAAALHLTC*
Ga0137369_100141371	3300012355	Vadose Zone Soil	DPELFEQLRERGVEVEALPTDEAVRRYRDLDPRRTAAALHLTC*
Ga0137369_103248233	3300012355	Vadose Zone Soil	ETIEQLRERGVEVEALPTGEAVRRYGELDPRRSAAALHLTC*
Ga0137369_104522781	3300012355	Vadose Zone Soil	MQPDPDTIQQLQDRGVTVETLPTSQAVRRFGELDPANTAAALHLTC*
Ga0137369_105636262	3300012355	Vadose Zone Soil	DRGIEVEVLPTGEAVHRYGELDPRRTAAALHLTC*
Ga0137384_112023561	3300012357	Vadose Zone Soil	MRPDQATLDELDRRGVKVEVLRTDEAARRYGELDSSTTAAALHLIC*
Ga0137385_112650612	3300012359	Vadose Zone Soil	LEALRARGVDVEVLPTAEAVRRYAQRDPRKSAAALHLTC*
Ga0137375_105789951	3300012360	Vadose Zone Soil	IEELERRGIDVELLHTDEAVRRYGELDERRTAAALHLTC*
Ga0134031_10148281	3300012388	Grasslands Soil	YGRMRPDAGALEALRSRGVEVEVLPTTEAVNRYPELDPQKTAAALHLTC*
Ga0137373_101004322	3300012532	Vadose Zone Soil	MRPDPQLSECLRERGVEVEALPTAAAIRRYGELDPRCAAAALHLTC*
Ga0137373_101688014	3300012532	Vadose Zone Soil	YGQMRPDPETIEQLRERGVKVEALPTGEAVRRYGELDPHRTAAALHLTC*
Ga0164299_108585681	3300012958	Soil	EVFDRLKERGVEVECLQTDQAVARFAELEPATTAAALHLTC*
Ga0134077_101677142	3300012972	Grasslands Soil	LETLRARGVEVEVLPTAEAVQRYAQLDPRKTAAALHLTC*
Ga0157378_116977401	3300013297	Miscanthus Rhizosphere	LETLRTRGIDVEVAPTPEAVARYAELDPQTTAAALHLTC*
Ga0181613_11162881	3300014149	Anoxic, Neutral-Ph, Fe/Si-Rich Hot Spring Water	PTVLRLLRERGVEVEVLPTEEAVRRYGELDPARTAAALHLTC*
Ga0157380_124913342	3300014326	Switchgrass Rhizosphere	RGRGIDVEMLPTAAAVDRYAELDPQTTAAALHLTC*
Ga0132255_1030382661	3300015374	Arabidopsis Rhizosphere	IESLRGRGIDVEVLRTAAAVDRYAELDPQTTAAALHLTC*
Ga0182035_109857161	3300016341	Soil	NPDVIAELERRGIAVECLPTDEAVRRYGELDERRTAAALHLTC
Ga0134069_11721651	3300017654	Grasslands Soil	QLRQRGVEVEALPTDEAVRRYCELDPRRTAAALHLTC
Ga0134074_11775552	3300017657	Grasslands Soil	LARRGVRVECLRTDAAVRRYGELDERRTAAALHLTC
Ga0190266_104028482	3300017965	Soil	MSSLVRCEGIEVEALPAAKAVRRYGELDPGRTAAALHLTC
Ga0184605_100359233	3300018027	Groundwater Sediment	GADERMRPDPEVFDRLKERGVEVECLQTDQAVTRFAELDPANTAAALHLTC
Ga0184637_103448992	3300018063	Groundwater Sediment	MLETLRDRGVDVEVLPTADAVERYAQLDPRKTAAALHLTC
Ga0184625_101302024	3300018081	Groundwater Sediment	ALETLRARGVDVEVFPTADAVQRYAQLDPKRTAAALHLTC
Ga0066667_112381442	3300018433	Grasslands Soil	EALDQLRRRGVEVEALPTDEAVRRYGELDPRRTAAALHLTC
Ga0066667_113310412	3300018433	Grasslands Soil	ADQRMQPDPDVLDRLQERGVDVECLPTDRAVARFGELDPADTAAALHLTC
Ga0066667_115813411	3300018433	Grasslands Soil	PDALRALAKRGIQVEVLRTGDAVRRYGELDEARTAAAIHLTC
Ga0190270_104721661	3300018469	Soil	PAVLEQLRARGVEVEAMPTAEAVRRYGELDPKRTAAALHLTC
Ga0190270_132059022	3300018469	Soil	VIEELERRGIDVELLHTDEAVRRYGELDERRTAAALHLTC
Ga0066669_108663471	3300018482	Grasslands Soil	RLQERGVDVECLPTDSAVARFGELDPADTAAALHLTC
Ga0066669_122514591	3300018482	Grasslands Soil	LVVGMGADGRMRPDPGTLDRLRGRGVEVECHRTDRAIARLAELDPATTAAALHLTC
Ga0190267_110832971	3300019767	Soil	EAFGQLRRDGIEVEALPTADAVRRYGELDPWRTAALHLNC
Ga0222622_107379241	3300022756	Groundwater Sediment	ALERRGVAVEALPTADAVERYRGLDPARTAAALHLTC
Ga0209478_10073485	3300025094	Hot Spring Sediment	PDPAVLRLLRERGVEVEVLPTEQAVRRYGELDPARTAAALHLTC
Ga0209642_106085791	3300025167	Soil	RPDPGLPAQLRELGVLVEVLPTEEAVRRYGELDPARTAAALHLTC
Ga0209324_106142801	3300025174	Soil	LRPEPKTLEQLRERGIEVEALPTGEAVHRYGELDPRRTAAALHLTC
Ga0207646_107347211	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	AYGRLRPDPSALERLRERGVAVEALPTGQAVRRYGELDPARSAVALHLTC
Ga0207706_103216524	3300025933	Corn Rhizosphere	RLRPDPGTIETLRGRGIDVEVLRTAAAVDRYAELDPQTTAAALHLTC
Ga0207667_109439681	3300025949	Corn Rhizosphere	PDPGTIETLRGRGIDVEVLRTAAAVDRYAELDPRTTAAALHLTC
Ga0208531_10219261	3300026020	Rice Paddy Soil	LRGRGIDVEVLPTAEAVDRYAELDPQTTAAALHLTC
Ga0207639_105354204	3300026041	Corn Rhizosphere	ESLRGRGIDVEVLRTAAAVDRYAELDPQTTAAALHLTC
Ga0208287_10233662	3300026044	Natural And Restored Wetlands	TGATGRMEPDPAVLEDLRARGVDVECLPTDRAVERFGELDPATSAAALHLTC
Ga0209878_10419242	3300027163	Groundwater Sand	ALETLRARGVDVEVLPTADAVQRYAQLDPKRTAAALHLTC
Ga0209874_10890141	3300027577	Groundwater Sand	RPDPVTLELLRQRGIEVEALPTDEAVRRFQELDPAATAAALHLTC
Ga0272482_100457362	3300028578	Soil	MPSHLVVGTEAAGRMRPDPDTIQQLQDRGLTVEALPTSQAVRRFGELDPANTAAALHLTC
Ga0247828_112117112	3300028587	Soil	PGTIESLRGRGIDVEVLPTAEAVDRYAELDPRTTAAALHLTC
Ga0307291_10523461	3300028707	Soil	VLGCGAHGRLVPDPAVVEALERRGVAVEALPTADAVERYRGLDPARTAAALHLTC
Ga0307291_10709461	3300028707	Soil	GTGADERMRPDPEVFDRLKERGVEVECLQTDQAVTRFAELDPANTAAALHLTC
Ga0307289_103423351	3300028875	Soil	EVLDRLKERGVEVECLQTDQAVTRFAELDPANTAAALHLTC
Ga0307278_100012461	3300028878	Soil	LEQLRAREIEVESLPTPDAVRRYGELDEARTAAALHLTC
Ga0307300_102436862	3300028880	Soil	GTLEMLRARGVDVEVLPTAEAVTRYAELDPQTTAAALHLTC
Ga0307308_104441501	3300028884	Soil	RPDPDVFDRLKERGVEVECLQTDRAVTRFAELDPAKTAAALHLTC
Ga0299907_113074951	3300030006	Soil	RQRGIEVEALPTAEAVHRYGELDPRRTAAALHLTC
Ga0308201_103537511	3300031091	Soil	LEMLRARGVDVEVLPTAEAVTRYAELDPQTTAAALHLTC
Ga0318560_100246021	3300031682	Soil	RLRPDTEALERLRARGIHVESLPTADAVERYLRLDPDHAAAALHLTC
Ga0307405_117303182	3300031731	Rhizosphere	MRPDPDTVLQLQRGVTVEALPTGQAVRRFGELDPARAAAALHLTC
Ga0307413_100104771	3300031824	Rhizosphere	ETVNELRRGGIEVEALATADAVRRYTELDPHRTAAALHLTC
Ga0307410_120632552	3300031852	Rhizosphere	GRMRPDPDTILQLQQRGVTVEALPTAQAVRRFGELDPTGAAAALHLTC
Ga0307406_108375381	3300031901	Rhizosphere	PDQDTVQRLQARGVTVESLPTGQAVRRYGALEARRTAAALHLTC
Ga0307412_101258121	3300031911	Rhizosphere	RPDPHALERLRAHGVTVETLPTGQAVRRYGELDPSRTAAALHLTC
Ga0307412_121807681	3300031911	Rhizosphere	IRIGAYGQRHPNPETVKELRSGGIEVEALPTADAVRRYTDLDPHRTAAALHLTC
Ga0310909_107976691	3300031947	Soil	LIVGTGAYGRLRPDTEALERLRARGIHVESLPTADAVERYLRLDPDHAAAALHLTC
Ga0307409_1008324602	3300031995	Rhizosphere	MRPDPDTILRLQQRGVTVEALPTAQAVRRFGELDPAGAAAALHLTC
Ga0307409_1021029771	3300031995	Rhizosphere	PAVLAALERRGVHAECLPTDAAVRRYGELDERRTAAALHLTC
Ga0307416_1029810542	3300032002	Rhizosphere	PDTIRQLQERGVTVEALPTGQAVRRFGELDPARTAAALHLTC
Ga0307414_117452612	3300032004	Rhizosphere	MRPDPDTVQQLQERGVTVEALPTGRAVRRFGELDPAGAAAALHLTC
Ga0307411_104771461	3300032005	Rhizosphere	GRMRPDPDMILQLQQRGVTVETLPTAQAVRRFGELDPTGAAAALHLTC
Ga0307415_10000062015	3300032126	Rhizosphere	VGTGADGRMRPDPDTVLQLQRGVTVEALPTGQAVRRFGELDPARAAAALHLTC
Ga0307415_1005801231	3300032126	Rhizosphere	RTQARGVTVESLLTDRAVRHYGELDPSRTAVALHLTC
Ga0307415_1024766851	3300032126	Rhizosphere	ANGRMRPDPDTIQQLQARGITVEALPTGQAVRRFGELDSASTAAAFHLTC
Ga0268251_102143662	3300032159	Agave	LQDRGVTVEALPTGQAVRRFGQLDLARAAAALHLTC
Ga0268251_104613552	3300032159	Agave	VLAALERRGVQVECLPTDAAVRRYGELDERRTAAALHLTC
Ga0306920_1042995791	3300032261	Soil	AELERRGTMVECLPTAEAVRRYGELDERHTAAALHLTC
Ga0335085_100302401	3300032770	Soil	ALRQRGIEVDALPTGEAVRLFGELDPARTAAALHLTC
Ga0335079_103074452	3300032783	Soil	YSGLHPDPTAIAELDRRGTAVECLHTHQAVRRYGKLDERPTVAALHLTC
Ga0335081_127101561	3300032892	Soil	AAIAELRRRDIAVECLHTHQAVRRYGELDERRTAAALHLTC
Ga0335077_108430312	3300033158	Soil	AYSGLHPDPTAIAELDRRGTAVECLHTHQAVRRYGKLDERPTVAALHLTC
Ga0318519_105599032	3300033290	Soil	GAYGRLRPDTEALERLRARGIHVESLPTADAVERYLRLDPDHAAAALHLTC
Ga0314864_0026809_6_146	3300033805	Peatland	MHLAPAVIEQLTARGVTVEVLRTPHAVRRYRELDPKHTAAALHLTC
Ga0364926_084063_235_375	3300033812	Sediment	MRPEPEMLEQLRERGIEVEALPTGEAVHRYGELDPRRTAAALHLTC
Ga0334932_025566_11_151	3300034174	Sub-Biocrust Soil	MRPEPDAVRQLQQRGVTVEALPTGQAVRRFGELDPARTAAALHLTC

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F052227

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences