Metagenome Family F052429

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F052429
Family Type	Metagenome
Number of Sequences	142
Average Sequence Length	48 residues
Representative Sequence	MANSIMDSILAMVTPEMKQALAGRLGESPQAVQSGLGAATAA
Number of Associated Samples	104
Number of Associated Scaffolds	142

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	89.44 %
% of genes near scaffold ends (potentially truncated)	99.30 %
% of genes from short scaffolds (< 2000 bps)	91.55 %
Associated GOLD sequencing projects	101
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (52.113 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (51.409 % of family members)
Environment Ontology (ENVO)	Unclassified (62.676 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (57.746 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.00% β-sheet: 0.00% Coil/Unstructured: 50.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 142 Family Scaffolds
PF04226	Transgly_assoc	19.01
PF08239	SH3_3	17.61
PF07690	MFS_1	8.45
PF09458	H_lectin	1.41
PF05199	GMC_oxred_C	1.41
PF02782	FGGY_C	0.70
PF05532	CsbD	0.70
PF14026	DUF4242	0.70
PF16694	Cytochrome_P460	0.70
PF03137	OATP	0.70
PF02371	Transposase_20	0.70
PF06078	DUF937	0.70
PF00498	FHA	0.70
PF00078	RVT_1	0.70
PF08298	AAA_PrkA	0.70
PF00793	DAHP_synth_1	0.70
PF13439	Glyco_transf_4	0.70
PF13517	FG-GAP_3	0.70

COG ID	Name	Functional Category	% Frequency in 142 Family Scaffolds
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	19.01
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	1.41
COG2766	Predicted Ser/Thr protein kinase	Signal transduction mechanisms [T]	0.70
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.70
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.70
COG3753	Uncharacterized conserved protein YidB, DUF937 family	Function unknown [S]	0.70

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	52.11 %
Unclassified	root	N/A	47.89 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	52.11 %
Unclassified	root	N/A	47.89 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	52.11 %
Unclassified	root	N/A	47.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	42.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.89 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	11.97 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5.63 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.11 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	1.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.89 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	10.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.11 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1.41 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.89 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	10.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.11 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1.41 %
Segnochrobactraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Segnochrobactraceae	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.89 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	10.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.11 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1.41 %
Segnochrobactrum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Segnochrobactraceae → Segnochrobactrum	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.89 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	10.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.11 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1.41 %
Segnochrobactrum spirostomi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Segnochrobactraceae → Segnochrobactrum → Segnochrobactrum spirostomi	0.70 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_17071299	Not Available	2911	Open in IMG/M
3300000789\|JGI1027J11758_12635634	Not Available	619	Open in IMG/M
3300005330\|Ga0070690_100343200	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1082	Open in IMG/M
3300005335\|Ga0070666_10980196	Not Available	627	Open in IMG/M
3300005614\|Ga0068856_100353859	All Organisms → cellular organisms → Bacteria	1487	Open in IMG/M
3300005764\|Ga0066903_102580217	All Organisms → cellular organisms → Bacteria → Proteobacteria	985	Open in IMG/M
3300005921\|Ga0070766_10671218	Not Available	700	Open in IMG/M
3300006881\|Ga0068865_100317690	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1252	Open in IMG/M
3300009176\|Ga0105242_11888263	Not Available	637	Open in IMG/M
3300009683\|Ga0116224_10630994	Not Available	512	Open in IMG/M
3300009826\|Ga0123355_11806402	Not Available	576	Open in IMG/M
3300010043\|Ga0126380_10854657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	751	Open in IMG/M
3300010046\|Ga0126384_10082426	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2322	Open in IMG/M
3300010046\|Ga0126384_11368129	Not Available	659	Open in IMG/M
3300010048\|Ga0126373_12952110	Not Available	530	Open in IMG/M
3300010360\|Ga0126372_13287162	Not Available	503	Open in IMG/M
3300010361\|Ga0126378_11021261	Not Available	930	Open in IMG/M
3300010361\|Ga0126378_12990674	Not Available	539	Open in IMG/M
3300010376\|Ga0126381_102892860	Not Available	684	Open in IMG/M
3300010376\|Ga0126381_103923522	Not Available	580	Open in IMG/M
3300010376\|Ga0126381_104387521	Not Available	546	Open in IMG/M
3300012961\|Ga0164302_10327742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1013	Open in IMG/M
3300012971\|Ga0126369_10055550	All Organisms → cellular organisms → Bacteria → Proteobacteria	3406	Open in IMG/M
3300012971\|Ga0126369_11945869	All Organisms → cellular organisms → Bacteria → Proteobacteria	676	Open in IMG/M
3300012971\|Ga0126369_12771144	Not Available	574	Open in IMG/M
3300012971\|Ga0126369_12938034	Not Available	558	Open in IMG/M
3300013296\|Ga0157374_11094670	All Organisms → cellular organisms → Bacteria → Proteobacteria	817	Open in IMG/M
3300013306\|Ga0163162_11360178	All Organisms → cellular organisms → Bacteria → Proteobacteria	807	Open in IMG/M
3300014168\|Ga0181534_10529537	Not Available	670	Open in IMG/M
3300014199\|Ga0181535_10160783	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1401	Open in IMG/M
3300014658\|Ga0181519_10514797	Not Available	737	Open in IMG/M
3300016294\|Ga0182041_11228674	All Organisms → cellular organisms → Bacteria → Proteobacteria	684	Open in IMG/M
3300016341\|Ga0182035_12165136	All Organisms → cellular organisms → Bacteria → Proteobacteria	504	Open in IMG/M
3300016357\|Ga0182032_10039607	All Organisms → cellular organisms → Bacteria	2968	Open in IMG/M
3300016371\|Ga0182034_11178036	All Organisms → cellular organisms → Bacteria → Proteobacteria	666	Open in IMG/M
3300016387\|Ga0182040_10802794	Not Available	775	Open in IMG/M
3300016404\|Ga0182037_11815909	Not Available	545	Open in IMG/M
3300016445\|Ga0182038_10150852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1773	Open in IMG/M
3300016445\|Ga0182038_11052180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	722	Open in IMG/M
3300016445\|Ga0182038_11571436	Not Available	591	Open in IMG/M
3300018007\|Ga0187805_10200466	Not Available	911	Open in IMG/M
3300018060\|Ga0187765_10672966	Not Available	676	Open in IMG/M
3300018060\|Ga0187765_11188815	Not Available	534	Open in IMG/M
3300020150\|Ga0187768_1029396	All Organisms → cellular organisms → Bacteria	1195	Open in IMG/M
3300021402\|Ga0210385_10313612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1165	Open in IMG/M
3300021560\|Ga0126371_10794391	All Organisms → cellular organisms → Bacteria → Proteobacteria	1093	Open in IMG/M
3300021560\|Ga0126371_11538665	Not Available	793	Open in IMG/M
3300021560\|Ga0126371_11733165	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300021560\|Ga0126371_12586894	Not Available	615	Open in IMG/M
3300021560\|Ga0126371_13013121	Not Available	570	Open in IMG/M
3300025898\|Ga0207692_10152601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1324	Open in IMG/M
3300025931\|Ga0207644_11058671	Not Available	681	Open in IMG/M
3300030046\|Ga0302305_1185645	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300030053\|Ga0302177_10327346	All Organisms → cellular organisms → Bacteria → Proteobacteria	812	Open in IMG/M
3300031057\|Ga0170834_109353858	Not Available	667	Open in IMG/M
3300031238\|Ga0265332_10278000	Not Available	692	Open in IMG/M
3300031344\|Ga0265316_11072704	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	559	Open in IMG/M
3300031561\|Ga0318528_10066250	All Organisms → cellular organisms → Bacteria → Proteobacteria	1853	Open in IMG/M
3300031561\|Ga0318528_10333289	All Organisms → cellular organisms → Bacteria → Proteobacteria	814	Open in IMG/M
3300031679\|Ga0318561_10297450	Not Available	883	Open in IMG/M
3300031679\|Ga0318561_10341884	All Organisms → cellular organisms → Bacteria → Proteobacteria	820	Open in IMG/M
3300031681\|Ga0318572_10352777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Segnochrobactraceae → Segnochrobactrum → Segnochrobactrum spirostomi	872	Open in IMG/M
3300031720\|Ga0307469_11227803	Not Available	709	Open in IMG/M
3300031724\|Ga0318500_10148220	All Organisms → cellular organisms → Bacteria → Proteobacteria	1103	Open in IMG/M
3300031736\|Ga0318501_10030421	All Organisms → cellular organisms → Bacteria → Proteobacteria	2382	Open in IMG/M
3300031736\|Ga0318501_10469840	Not Available	684	Open in IMG/M
3300031744\|Ga0306918_10141420	All Organisms → cellular organisms → Bacteria → Acidobacteria	1768	Open in IMG/M
3300031744\|Ga0306918_10731664	Not Available	774	Open in IMG/M
3300031747\|Ga0318502_11011960	Not Available	507	Open in IMG/M
3300031748\|Ga0318492_10025900	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	2599	Open in IMG/M
3300031751\|Ga0318494_10214993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1098	Open in IMG/M
3300031751\|Ga0318494_10216728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1093	Open in IMG/M
3300031763\|Ga0318537_10284700	Not Available	612	Open in IMG/M
3300031765\|Ga0318554_10408769	All Organisms → cellular organisms → Bacteria → Proteobacteria	770	Open in IMG/M
3300031765\|Ga0318554_10592933	Not Available	625	Open in IMG/M
3300031768\|Ga0318509_10488582	Not Available	688	Open in IMG/M
3300031768\|Ga0318509_10674453	Not Available	574	Open in IMG/M
3300031769\|Ga0318526_10274126	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300031769\|Ga0318526_10372610	Not Available	584	Open in IMG/M
3300031771\|Ga0318546_10044759	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	2724	Open in IMG/M
3300031771\|Ga0318546_11121293	Not Available	553	Open in IMG/M
3300031777\|Ga0318543_10101102	All Organisms → cellular organisms → Bacteria → Proteobacteria	1239	Open in IMG/M
3300031777\|Ga0318543_10245517	Not Available	798	Open in IMG/M
3300031779\|Ga0318566_10015039	All Organisms → cellular organisms → Bacteria → Proteobacteria	3322	Open in IMG/M
3300031779\|Ga0318566_10326093	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	759	Open in IMG/M
3300031781\|Ga0318547_10902630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	551	Open in IMG/M
3300031792\|Ga0318529_10258099	All Organisms → cellular organisms → Bacteria → Proteobacteria	811	Open in IMG/M
3300031794\|Ga0318503_10093532	All Organisms → cellular organisms → Bacteria → Proteobacteria	951	Open in IMG/M
3300031796\|Ga0318576_10056457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1714	Open in IMG/M
3300031797\|Ga0318550_10227509	Not Available	904	Open in IMG/M
3300031797\|Ga0318550_10304689	Not Available	773	Open in IMG/M
3300031798\|Ga0318523_10113916	All Organisms → cellular organisms → Bacteria	1333	Open in IMG/M
3300031799\|Ga0318565_10339774	All Organisms → cellular organisms → Bacteria → Proteobacteria	729	Open in IMG/M
3300031821\|Ga0318567_10437443	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300031831\|Ga0318564_10197119	All Organisms → cellular organisms → Bacteria → Proteobacteria	897	Open in IMG/M
3300031833\|Ga0310917_11154749	Not Available	516	Open in IMG/M
3300031845\|Ga0318511_10344580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	678	Open in IMG/M
3300031846\|Ga0318512_10521607	Not Available	603	Open in IMG/M
3300031859\|Ga0318527_10107813	All Organisms → cellular organisms → Bacteria → Proteobacteria	1148	Open in IMG/M
3300031859\|Ga0318527_10308200	Not Available	674	Open in IMG/M
3300031859\|Ga0318527_10388761	Not Available	595	Open in IMG/M
3300031897\|Ga0318520_10808572	All Organisms → cellular organisms → Bacteria → Proteobacteria	588	Open in IMG/M
3300031910\|Ga0306923_10262317	Not Available	1977	Open in IMG/M
3300031910\|Ga0306923_10989917	All Organisms → cellular organisms → Bacteria → Proteobacteria	914	Open in IMG/M
3300031912\|Ga0306921_10902993	All Organisms → cellular organisms → Bacteria	1003	Open in IMG/M
3300031942\|Ga0310916_10107160	Not Available	2254	Open in IMG/M
3300031942\|Ga0310916_11258377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	610	Open in IMG/M
3300031947\|Ga0310909_10192149	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1694	Open in IMG/M
3300031959\|Ga0318530_10049519	All Organisms → cellular organisms → Bacteria → Proteobacteria	1577	Open in IMG/M
3300031959\|Ga0318530_10341242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	620	Open in IMG/M
3300031981\|Ga0318531_10120380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1165	Open in IMG/M
3300032008\|Ga0318562_10369150	All Organisms → cellular organisms → Bacteria → Proteobacteria	834	Open in IMG/M
3300032008\|Ga0318562_10799011	Not Available	540	Open in IMG/M
3300032009\|Ga0318563_10540659	Not Available	629	Open in IMG/M
3300032043\|Ga0318556_10284457	All Organisms → cellular organisms → Bacteria → Proteobacteria	864	Open in IMG/M
3300032044\|Ga0318558_10252881	All Organisms → cellular organisms → Bacteria → Proteobacteria	867	Open in IMG/M
3300032051\|Ga0318532_10073690	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1190	Open in IMG/M
3300032051\|Ga0318532_10322743	Not Available	548	Open in IMG/M
3300032052\|Ga0318506_10457891	Not Available	566	Open in IMG/M
3300032054\|Ga0318570_10244969	Not Available	813	Open in IMG/M
3300032055\|Ga0318575_10184089	All Organisms → cellular organisms → Bacteria → Proteobacteria	1046	Open in IMG/M
3300032059\|Ga0318533_11001892	Not Available	613	Open in IMG/M
3300032065\|Ga0318513_10554811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	562	Open in IMG/M
3300032066\|Ga0318514_10177414	Not Available	1112	Open in IMG/M
3300032068\|Ga0318553_10773031	Not Available	502	Open in IMG/M
3300032076\|Ga0306924_10990965	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	923	Open in IMG/M
3300032089\|Ga0318525_10607589	Not Available	558	Open in IMG/M
3300032090\|Ga0318518_10031859	All Organisms → cellular organisms → Bacteria → Proteobacteria	2417	Open in IMG/M
3300032090\|Ga0318518_10478686	Not Available	638	Open in IMG/M
3300032091\|Ga0318577_10351018	All Organisms → cellular organisms → Bacteria → Proteobacteria	705	Open in IMG/M
3300032094\|Ga0318540_10177882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1023	Open in IMG/M
3300032094\|Ga0318540_10310488	Not Available	761	Open in IMG/M
3300032261\|Ga0306920_100029453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	7807	Open in IMG/M
3300032261\|Ga0306920_103012930	Not Available	635	Open in IMG/M
3300032783\|Ga0335079_11915129	Not Available	573	Open in IMG/M
3300032954\|Ga0335083_11402714	Not Available	534	Open in IMG/M
3300033158\|Ga0335077_10011425	All Organisms → cellular organisms → Bacteria → Proteobacteria	11099	Open in IMG/M
3300033289\|Ga0310914_11722304	Not Available	531	Open in IMG/M
3300033290\|Ga0318519_10095718	All Organisms → cellular organisms → Bacteria → Proteobacteria	1589	Open in IMG/M
3300033290\|Ga0318519_10774517	Not Available	589	Open in IMG/M
3300033290\|Ga0318519_10938018	Not Available	536	Open in IMG/M
3300033412\|Ga0310810_10907106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	773	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.96%
Host-Associated	Host-Associated	7.04%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.14%
Plants	Host-Associated → Plants	6.34%
Aquatic	Environmental → Aquatic	2.82%
Arthropoda	Host-Associated → Arthropoda	0.70%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.23%
Freshwater	Environmental → Aquatic → Freshwater	2.82%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.11%
Peat	Environmental → Terrestrial → Peat	1.41%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.70%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	81.69%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.23%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.82%
Loam	Environmental → Terrestrial → Soil → Loam	2.82%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.82%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.11%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.41%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.41%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.70%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	64.79%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.49%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.23%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.82%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.11%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.11%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.41%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.41%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.41%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.41%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.41%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.70%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.70%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	51.41%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	13.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.97%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.11%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.11%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.11%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.41%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.41%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.41%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.41%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.70%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.70%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.70%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.70%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.70%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.70%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.70%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.70%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.70%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.70%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009826	Embiratermes neotenicus P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P1	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental	Open in IMG/M
3300014658	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaG	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300020150	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MG	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300030046	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_3	Environmental	Open in IMG/M
3300030053	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031238	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG	Host-Associated	Open in IMG/M
3300031344	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG	Host-Associated	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_03794340	2088090014	Soil	MTRSLMDSILGMVTPDMKHALASRLGESLEGVLSGLGAATPH
JGI1027J11758_126356341	3300000789	Soil	MTRSLMDSILGMVTPDMKHALASRLGESLEGVLSGLGAAT
Ga0070690_1003432001	3300005330	Switchgrass Rhizosphere	MARSMMDAILALVTPDLRQAIASRLGESAQTVESGLSATTAATLGG
Ga0070666_109801961	3300005335	Switchgrass Rhizosphere	MMDAILALVTPDLRQAIASRLGESAQTVQSGLSATTAATLGGLAAK
Ga0068856_1003538591	3300005614	Corn Rhizosphere	MASSIMDSMLALVTPEMQQELATRLGESPQAVHNGLTAAGAAVLDGLATKVDDERFLPQALDF
Ga0066903_1025802171	3300005764	Tropical Forest Soil	VAISMVDSILAMVTPDVQHAIASRLGEAPQAVQGGLSAATAA
Ga0070766_106712181	3300005921	Soil	MATSMMDSILAMVTPDMKQAIASRLGESTQAVQGGL
Ga0068865_1003176902	3300006881	Miscanthus Rhizosphere	MASSMMDAILALVTPDLRQAIASRLGESAQTIQSG
Ga0105242_118882631	3300009176	Miscanthus Rhizosphere	MMDSILGMVTPDMKKAIASRLGESVQTVQSGLGATTA
Ga0116224_106309941	3300009683	Peatlands Soil	MTSILDGVLAMVTPEIKQSIASRLGESPTAIQSGLGTAAAATLGGLVSK
Ga0123355_118064021	3300009826	Termite Gut	MMDSILGMVTPNMQQALASRLGETPQAVQSGLSAATAATVSSLADRAGDSGFLNQVSGVLGDGTGQT
Ga0126380_108546572	3300010043	Tropical Forest Soil	MQETHMANSMLESILGMFTPDMQQSLASRLGESPTGVQSGVSAATATTLS
Ga0126384_100824263	3300010046	Tropical Forest Soil	MDSILGMVTPEMKQALVTRFGESSQGVQSGLGAATAATLDGLASKSS
Ga0126384_113681292	3300010046	Tropical Forest Soil	MATSMMDSILGLVTPNMKQALASRLGESPQAVQSGLGSATAATLSTLA
Ga0126373_129521102	3300010048	Tropical Forest Soil	MVTPEMKQALVGRLGESSQAVQSGLGAATAATLDGLASKSGDSGFLSQVVGLLGGGTG
Ga0126372_132871622	3300010360	Tropical Forest Soil	MQETHMANSMLESILGMFTPDMQQALASRLGESPTGVQSGVSAATATTLSGLADR
Ga0126378_110212611	3300010361	Tropical Forest Soil	MHMANTMMDSILGMVTPDMKQARAARLGESPQAVQGGLGTATATTLGSLASRTGDSG
Ga0126378_129906742	3300010361	Tropical Forest Soil	MATLMDSILGMVTPDMKQALASRLGESPQAVQGGLGTATAATLAGLASKSND
Ga0126381_1028928601	3300010376	Tropical Forest Soil	MQETHMANSMLESILGTFTPDMQQVLASRLGESPTGVQSGVSAATATTLSGLADRAGDSG
Ga0126381_1039235221	3300010376	Tropical Forest Soil	MDSILGMVTPEMKQTLAARFGESSQGVQSGLGAATAATLDGLASKSSDSGFLS
Ga0126381_1043875212	3300010376	Tropical Forest Soil	MDSILAMVTPEMKQALAGRLGELSQAVQSGLGAATAATLDGLASKSG
Ga0164302_103277422	3300012961	Soil	MMDAILALVTPELQQAIASRLGESAQTVQGGLSATTAATLGGLAAKAG
Ga0126369_100555501	3300012971	Tropical Forest Soil	MADSIMDAVLAMVSPEMQQSLAARLAESPQSVYRGLGTAAAATLDGMASKAGDPLFITGTLNL
Ga0126369_119458691	3300012971	Tropical Forest Soil	MQETHMANSMLESILGMVTPDMKQALASRLGESTAGVQSGLGAATA
Ga0126369_127711442	3300012971	Tropical Forest Soil	MMDSILALVTPDLKQAIASRLGESTQAVQGGLGAATAA
Ga0126369_129380341	3300012971	Tropical Forest Soil	MQETHMANSMLESILGMFTPDMQQALASRLGESPTGVQSGVSAATATTLSGLADRA
Ga0157374_110946701	3300013296	Miscanthus Rhizosphere	MASSMMDAILALVTPNLRQAIASRLGESAPTVQSGLSAPTAATLGGL
Ga0163162_113601782	3300013306	Switchgrass Rhizosphere	MMDSILGMVTPDMKKAIASRLGESVQTVQSGLGATTAATLGGLTGKAG
Ga0181534_105295371	3300014168	Bog	MANTMMDSILGMVTPEMKQALASRLGDSPQAVQGGLGAVTAAT
Ga0181535_101607832	3300014199	Bog	MVTPEMKQSIASRLGESPTAIQSGLGTAAAATLGGLVSKAGDSNFLNQ
Ga0181519_105147972	3300014658	Bog	MMDSILAMVTPEMKQAIASRLGDSPQAVQGGLGAVTAATLGGLA
Ga0182041_112286742	3300016294	Soil	MANSMLESILGMVTPDMNQALASRLGESATGVQSGLSAATATTLSSL
Ga0182035_121651361	3300016341	Soil	MASSMLESILGMVTPEMKQALATRLGESAGSIQNG
Ga0182032_100396075	3300016357	Soil	MANSMLESILGMVTPDMNQALASRLGESATGVQSGLSAAT
Ga0182034_111780362	3300016371	Soil	MASSIMDSILGMVTPDMKQALATRLGESPQGVQSGLGASTAATLDGLASKSSD
Ga0182040_108027942	3300016387	Soil	MATTKPMATSLLDGVLGLVTPEMKQALASRLGETP
Ga0182037_118159091	3300016404	Soil	MTDSMVASILGMVTPGVKHAWAARLGESLEGVQSGLGAATAATLSGLARKA
Ga0182038_101508521	3300016445	Soil	MANSMLESILGMVTPDMKQALASRLGESTAGVQSGLG
Ga0182038_110521801	3300016445	Soil	MATSIMDSIQGLITPEIKQALVSRLGESPQAVQSGLGAATAATLGGLASKAGDSGF
Ga0182038_115714361	3300016445	Soil	MANSMLESILGMVTPDMNQALASRLGESATGVQSGL
Ga0187805_102004661	3300018007	Freshwater Sediment	MTSILDGVMAMVTPEMKQSIASRLGESPSAIQSGLGTAA
Ga0187765_106729662	3300018060	Tropical Peatland	MATMLDSILGMVTPEMKQALASRLGESAQGVQSGLGTATAATL
Ga0187765_111888151	3300018060	Tropical Peatland	MASSIMDSMLALVTPEMQRALAARLGESSQAVHSGLTAAGAAVLDG
Ga0187768_10293961	3300020150	Tropical Peatland	MATTRPMMTSILDAVLGMVTPEMKQALASRLGETPTAIQSGLDTA
Ga0210385_103136121	3300021402	Soil	MATSMMDSILAMVTPDMKQAIASRLGESTQAVQGG
Ga0126371_107943912	3300021560	Tropical Forest Soil	MTSSLMDSILGMVSPVMKWALVSRLGESLEGVQSGLNAATAATLSGLDRRAA
Ga0126371_115386652	3300021560	Tropical Forest Soil	MATTKPMATSLLDGVLGLVTPEMKQALASRLGETPAGVQSGLGTASAAIL
Ga0126371_117331652	3300021560	Tropical Forest Soil	MATLMDSILGMVTPEMKQALASRLGESPQAVQGGIGTETAATLSGLATKAGDSGFLDQITGLLGGTTG
Ga0126371_125868942	3300021560	Tropical Forest Soil	MATSIMDSILAMVTPEMQQALAGRLGESPQAVQSGLGAA
Ga0126371_130131211	3300021560	Tropical Forest Soil	MATSMMDSILGLVTPNMKQALASRLGESPQAVQSGL
Ga0207692_101526012	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MASSMMDAILALVTPDLRQAIASRLGESAQTVQSGLSATTAATL
Ga0207644_110586711	3300025931	Switchgrass Rhizosphere	MATSMMDSILGMVTPDMKKAIASRLGESVQTVQSGLGATTAATLGGLTGKAGDSSFLSQI
Ga0302305_11856452	3300030046	Palsa	MPTSMMDSILALVTPDMKQAIASRLGESPQAVQGGLGAATAAT
Ga0302177_103273462	3300030053	Palsa	MPTSMMDSILALVTPDMKQAIASRLGESPQAVQGGLGAATAATLGGL
Ga0170834_1093538582	3300031057	Forest Soil	MANSMMDSILAMVTPEMKQALAVHLGESPQAVQGGLGAA
Ga0265332_102780001	3300031238	Rhizosphere	VANSMLDGILAMVTPEMKQSLAARLGVSQQSLDTGLGTAAAATLGGLASKAGD
Ga0265316_110727042	3300031344	Rhizosphere	MANSMLDSILAMVTPEMKQSLSARLGESQQSVETGLGTAAAATLSGLASKAGDTS
Ga0318528_100662501	3300031561	Soil	MATSIMDSIQGLITPEIKQALVSRLGESPQAVQSGLGAATAAT
Ga0318528_103332891	3300031561	Soil	MANSMLESILGMVTPDMNQALASRLGESATGVQSGLSAATATTLSGL
Ga0318561_102974502	3300031679	Soil	MASSMMDSILAMVTPEMKQALAGRLGESPQAVQSGLGA
Ga0318561_103418842	3300031679	Soil	MANSMLESILGMVTPDMNQALASRLGESATGVQSGLSAATATTLSGLADKANDNG
Ga0318572_103527772	3300031681	Soil	MANSIMDSILGMVTPEMKQALTGRFGESPQAVQSGLGASTAATLDGLASKSSDSGFLGQVLGLLGGGAGQN
Ga0307469_112278031	3300031720	Hardwood Forest Soil	MATSMMDSILGMITPEMKQALASHLGESASSVQSGLGAAT
Ga0318500_101482202	3300031724	Soil	MANSMLESILGMVTPDMKQALASRLGEPTAGVQTGLGAATASTLSG
Ga0318501_100304211	3300031736	Soil	MANSMLESILGMVTPDMNQALASRLGESATGVQSGLSAATATTLS
Ga0318501_104698401	3300031736	Soil	MANSIMDSILAMVTPEMKQALAGRLGESPQAVQSGLGA
Ga0306918_101414202	3300031744	Soil	MATSILDGVLALVTPEMKQALASRLGESPMAIQSGLGT
Ga0306918_107316641	3300031744	Soil	MTGSMMDSILGMVTPDMRQALASRLGESLEGVQSGLGAATAATLSGLARKSAADGGFLGQ
Ga0318502_110119602	3300031747	Soil	MASSMMDSILAMVTPEMKQALAGRLGESPQALQSGLGAATAATLDG
Ga0318492_100259005	3300031748	Soil	MANSMLESILGMVTPDMNQALASRLGESATGVQSG
Ga0318494_102149931	3300031751	Soil	MATSIMDSIQGLITPEIKQALISRLGESPQAVQSGLG
Ga0318494_102167282	3300031751	Soil	MATSIMDSIQGLITPEIKQALVSRLGESPQAVQSGLGAATAATLGGLASKASD
Ga0318537_102847002	3300031763	Soil	MASSMMDSILAMVTPEMKQALAGRLGESPQAVQSGLGAATAATLDGLASKSGDSGFLSQVVGLLGGGTGQS
Ga0318554_104087691	3300031765	Soil	MANSMLESILGMVTPDMKQALASRLGEPTAGVQTGLGAATAS
Ga0318554_105929332	3300031765	Soil	MANSMLESILGMVTPDMKQALASRLGESTAGVQSGLGAA
Ga0318509_104885822	3300031768	Soil	MASSIMDSILGMVTPDMKQALATRFGESSQAVQSGLGAATAATLDG
Ga0318509_106744532	3300031768	Soil	MANSMLESILGMVTPDMKQALASRLGESTAGIQSGLGA
Ga0318526_102741261	3300031769	Soil	MANSIMDAVLAMVTPEMKQALAGRLGESPQAVQSGLGAATAATLDGLASKA
Ga0318526_103726101	3300031769	Soil	MANSMLESILGMVTPDMNQALASRLGESATGVQSGLSAATATTLSGLADKAN
Ga0318546_100447595	3300031771	Soil	MANSMLESILGMVTPDMNQALASRLGESATGVQSGLSAATA
Ga0318546_111212932	3300031771	Soil	MANSMLESILGMVTPDMKQALASRLGESTAGIQSGLGAATAAT
Ga0318543_101011023	3300031777	Soil	MANSIMDSILGMVTPEMKQALTGRFGESPQAVQSGLGASTAATLDGLASKSSDSG
Ga0318543_102455171	3300031777	Soil	MTSSIMDSILAMVTPEMAQTLSARLGEPPQSLYAGLGASTA
Ga0318566_100150393	3300031779	Soil	MATSIMDSIQGLITPEIKQALVSRLGESPQAVQSGLGAATAATLGGLASKAGDS
Ga0318566_103260931	3300031779	Soil	MASSMLESILDMVTPEMQQALAARLGESTTSVQNGL
Ga0318547_109026301	3300031781	Soil	MASSMMDSILAMVTPEMKQALAGRLGESPQAVQSGLGAA
Ga0318529_102580991	3300031792	Soil	MANSMLESILGMVTPDMNQALASRLGESATGVQSGLSAATATTLSG
Ga0318503_100935321	3300031794	Soil	MANSMLESILGMVTPDMNQALASRLGESATGVQSGLSAATATTLSGLADKASDSA
Ga0318576_100564572	3300031796	Soil	MATSIMDSIQGLITPEIKQALVSRLGESPQAVQSGLGAATAATLGGLASKA
Ga0318550_102275091	3300031797	Soil	MANSIMDSILGMVTPEMKQALTGRFGESPQAVQSGLGASTAATLDGLASTSSDCGYLGQVLGL
Ga0318550_103046891	3300031797	Soil	MAGSIMDSILGMVTPDMKQALATRFGESSQAVQSGLGAATAATLDGMASKSSDSGFVSQVLGLLAI
Ga0318523_101139163	3300031798	Soil	MANSIMDSILAMVTPEMKQALAGRLGESPQAVQSGLGAATAA
Ga0318565_103397741	3300031799	Soil	MANSMMDSILAMVTPEMKQALAGRLGGSPQAVQSGLG
Ga0318567_104374432	3300031821	Soil	MANSMLDSIMGLVTPDMKQSIASSLGGSPQGVTTGLNAATAATLGSLVGRAGDSGFLGQVMNLVGTAGNQNVLSN
Ga0318564_101971191	3300031831	Soil	MANSMMDSILGMVTPEMKQALASRLGESPQSVQGGLGTATAATLGGLANHA
Ga0310917_111547491	3300031833	Soil	MANSMLESILGMVTPDMKQALASRLGEPTAGVQTGLGAATASTLSGLADRA
Ga0318511_103445802	3300031845	Soil	MANSMLESILGMVTPDMKQALASRLGESTAGVQSGL
Ga0318512_105216072	3300031846	Soil	MANSMLESILGMVTPDMNQALASRLGESATGVQSGLSAATATTLSGLADKA
Ga0318527_101078133	3300031859	Soil	MANSIMDSILAMVTPEMKQALATRLGEAPQATQSGLGAATAATLDGMASKA
Ga0318527_103082001	3300031859	Soil	MTGSMMDSILGMVTPDMRQALASRLGESLEGVQSGLGAATAATLSG
Ga0318527_103887611	3300031859	Soil	MANSMMDPILAMVTPEMKQALASRLGESPQAVQGGLG
Ga0318520_108085721	3300031897	Soil	MANSMLESILGMVTPDMNQALASRLGESASGVQSGLSAATATTLSGLADK
Ga0306923_102623173	3300031910	Soil	MTGSMVESILGMVTPDMKNGLALRLGESLEGVQSGLGAATAAALSGLDRKSAHSRCL
Ga0306923_109899171	3300031910	Soil	MANSIMDAVLAMVTPEMKQALATRLGEAPQATQGGLGAAT
Ga0306921_109029932	3300031912	Soil	MATLMDSILGMVTPDMKQALASRLGESPQAVQGGLGTATA
Ga0310916_101071603	3300031942	Soil	MTGSMVESILGMVTPDMKNGLALRLGESLEGVQSGLGAATAA
Ga0310916_112583771	3300031942	Soil	MANSMMDSILGMVTPEMKQALASRLGESPQSVQGGLGT
Ga0310909_101921491	3300031947	Soil	MADSIMDSVLAMVTPEMQQSLAARLAEAPQPVYRGLSTAAAATLDGLASKAGD
Ga0318530_100495193	3300031959	Soil	MANSIMDSILGMVTPEMKQALTGRFGESPQAVQSGLGASTAATLDGLASKSSDSGYLGQVLGLLGG
Ga0318530_103412421	3300031959	Soil	MANSIMDSILAMVTPEMKQALAGRLGESPQAVQSGLGAATAATLDGLASKASDS
Ga0318531_101203801	3300031981	Soil	MATSIMDSIQGLITPEIKQALVSRLGESPQAVQSGLGAATAATLGG
Ga0318562_103691503	3300032008	Soil	MANSMLESILGMVTPDMKQALASRLGEPTAGVQTGLGA
Ga0318562_107990112	3300032008	Soil	MANSIMDSILGMVTPEMKQALTGRFGESPQAVQSGLGASTAATLDGLASKSS
Ga0318563_105406592	3300032009	Soil	MANSIMDSILGMVTPEMKQALAGRFGESPPAVQSGL
Ga0318556_102844571	3300032043	Soil	MANSIMDAVLAMVTPEMKQALATRLGEAPQATQGGLGAATAATLDGM
Ga0318558_102528812	3300032044	Soil	MANSMLESILGMVTPDMKQALASRLGEPTAGVQTGLGAATASTLSGLADRASDSGF
Ga0318532_100736902	3300032051	Soil	MATSIMDSIQGLITPEIKQALVSRLGESPQAVQSGLGAATAATLGGLASKASDS
Ga0318532_103227432	3300032051	Soil	MANSMLESILGMVTPDMKQALASRLGEPTAGVQTGLGAATASTLSGLADR
Ga0318506_104578911	3300032052	Soil	MANSMMDSILAMVTPEMKQALAGRLGGSPQAVQSGLGAATAATLDGLASKSGDSGFLSQVVGLLGGGTG
Ga0318570_102449692	3300032054	Soil	MTNSIMDSILAMVTPEMKQALAGRLGESPAAVQSGLGAA
Ga0318575_101840891	3300032055	Soil	MANSMLESILGMVTPDMNQALASRLGESATGVQSGLSAATATTLSGLADKASDSG
Ga0318533_110018922	3300032059	Soil	MADSIMDSVLAMVTPEMQQSLAARLAEAPQPVYRGLSTAAAATLDGLASKAGDPVFITDT
Ga0318513_105548111	3300032065	Soil	MANSMMDSILAMVTPEMKQALASRLGESPQAVQGGLGAATAATLGGLATK
Ga0318514_101774141	3300032066	Soil	MASSMMDSILAMVTPEMKQALAGRLGESPQAVQSGLGAATAATLDGLASKSGDSGFLSQ
Ga0318553_107730312	3300032068	Soil	MANSMLESILGMVTPDMKQALASRLGEPTAGVQTGLGAATA
Ga0306924_109909651	3300032076	Soil	MATSILDGVLALVTPEMKQALASRLGESPMAIQSGLGTAAAATLGGLV
Ga0318525_106075892	3300032089	Soil	MTDSMVASILGMVTPGVKHALAARLGESLEGVQSGLGAATAAT
Ga0318518_100318591	3300032090	Soil	MANSIMDSILGMVTPEMKQALTGRFGESPQAVQSGLGASTAATLDGLASKSSDSGYLGQVLGL
Ga0318518_104786862	3300032090	Soil	MANSMLESILGMVTPDMKQALASRLGESTAGIQSGLGAATAATLSS
Ga0318577_103510181	3300032091	Soil	MANSIMDSILGMVTPEMKQALTGRFGESPQAVQSGLGASTAA
Ga0318540_101778822	3300032094	Soil	MADSIMDSVLAMVTPEMQQSLAARLAEAPQPVYRGLSTAAAATLDGLASKAGDPVFI
Ga0318540_103104882	3300032094	Soil	MANSIMDSILGMVTPEMKQALTGRFGESPQAVQSGL
Ga0306920_1000294531	3300032261	Soil	MANSMLESILGMVTPDMKQALASRLGESTAGVQSGLGAATAATLSGLADKAGDGGFL
Ga0306920_1030129302	3300032261	Soil	MADSIMDSVLAMVTPEMQQSLAARLAEAPQSVYRGLGTAAAATLDGLASKAGDPVLIT
Ga0335079_119151292	3300032783	Soil	MATTRPMASSILDGVLGLVTPEMKQALAARLGESPVAVQSGLGTAAAATLAGLVSKAGD
Ga0335083_114027142	3300032954	Soil	MANSMMDSILAMVTPEMKQALAARLGDSPQAIQGGLGAATAATLGGLAARAGDSGFLGQVMNLAGAAN
Ga0335077_1001142511	3300033158	Soil	MASSMLESILALITPEMKQAIAARLGESPQAVHSGLGAGIAATLRALAS
Ga0310914_117223042	3300033289	Soil	MTDSMVASILGMVTPGVKHALAARLGESLEGVQSGLGAATAATLSGLARKAAADGG
Ga0318519_100957183	3300033290	Soil	MAGSIMDSILGMVTPDMKQALATRFGESSQAVQSGLGA
Ga0318519_107745172	3300033290	Soil	MATSIMDSIQGLITPEIKQALITRLGESPQSVQSGLGAATAATLGGLASKAGDSGF
Ga0318519_109380182	3300033290	Soil	MTGSMVESILGMVTPDMKNGLALRLGESLEGVQSG
Ga0310810_109071062	3300033412	Soil	MASSIMDSMLALVTPEMQRELATRLGESPQAVHNGLTAAGAAVLDGLATKVDDERFLPQA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F052429

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences