Metagenome / Metatranscriptome Family F054305

Basic Information
Family ID	F054305
Family Type	Metagenome / Metatranscriptome
Number of Sequences	140
Average Sequence Length	77 residues
Representative Sequence	MRFFRELDPFASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLLVFAVGLWTGWHKDAI
Number of Associated Samples	114
Number of Associated Scaffolds	140

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	45.45 %
% of genes near scaffold ends (potentially truncated)	7.86 %
% of genes from short scaffolds (< 2000 bps)	6.43 %
Associated GOLD sequencing projects	104
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (92.143 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (32.143 % of family members)
Environment Ontology (ENVO)	Unclassified (40.714 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (61.429 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 86.67% β-sheet: 0.00% Coil/Unstructured: 13.33%
Feature Viewer

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Pfam ID	Name	% Frequency in 140 Family Scaffolds
PF01042	Ribonuc_L-PSP	9.29
PF08299	Bac_DnaA_C	3.57
PF11158	DUF2938	2.86
PF01872	RibD_C	2.86
PF00156	Pribosyltran	1.43
PF01740	STAS	1.43
PF01668	SmpB	0.71
PF13489	Methyltransf_23	0.71
PF09509	Hypoth_Ymh	0.71
PF09298	FAA_hydrolase_N	0.71
PF03279	Lip_A_acyltrans	0.71
PF13620	CarboxypepD_reg	0.71
PF00117	GATase	0.71
PF14559	TPR_19	0.71
PF01594	AI-2E_transport	0.71
PF01066	CDP-OH_P_transf	0.71
PF13374	TPR_10	0.71
PF00487	FA_desaturase	0.71
PF13505	OMP_b-brl	0.71
PF01797	Y1_Tnp	0.71

COG ID	Name	Functional Category	% Frequency in 140 Family Scaffolds
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	9.29
COG0593	Chromosomal replication initiation ATPase DnaA	Replication, recombination and repair [L]	3.57
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	2.86
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	2.86
COG0179	2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.71
COG0558	Phosphatidylglycerophosphate synthase	Lipid transport and metabolism [I]	0.71
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.71
COG0691	tmRNA-binding protein	Posttranslational modification, protein turnover, chaperones [O]	0.71
COG1183	Phosphatidylserine synthase	Lipid transport and metabolism [I]	0.71
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	0.71
COG1560	Palmitoleoyl-ACP: Kdo2-lipid-IV acyltransferase (lipid A biosynthesis)	Lipid transport and metabolism [I]	0.71
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	0.71
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	0.71
COG4261	Predicted acyltransferase, LPLAT superfamily	General function prediction only [R]	0.71
COG5050	sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases	Lipid transport and metabolism [I]	0.71

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.14 %
All Organisms	root	All Organisms	7.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.14 %
cellular organisms	root	All Organisms → cellular organisms	7.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.14 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	7.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.14 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	7.14 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.14 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	7.14 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.14 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	5.00 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.14 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	5.00 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	0.71 %

Scaffold	Taxonomy	Length	IMG/M Link
3300000579\|AP72_2010_repI_A01DRAFT_1021463	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	952	Open in IMG/M
3300005332\|Ga0066388_100143439	All Organisms → cellular organisms → Bacteria	2956	Open in IMG/M
3300005332\|Ga0066388_102835526	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	886	Open in IMG/M
3300006791\|Ga0066653_10019888	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	2500	Open in IMG/M
3300015242\|Ga0137412_10217361	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1521	Open in IMG/M
3300020006\|Ga0193735_1131964	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	668	Open in IMG/M
3300021411\|Ga0193709_1033118	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1239	Open in IMG/M
3300021411\|Ga0193709_1095718	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	643	Open in IMG/M
3300026309\|Ga0209055_1085790	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1291	Open in IMG/M
3300026548\|Ga0209161_10118233	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1572	Open in IMG/M
3300027018\|Ga0208475_1025682	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	580	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.43%
Host-Associated	Host-Associated	3.57%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.00%
Aquatic	Environmental → Aquatic	6.43%
Plants	Host-Associated → Plants	3.57%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.00%
Sediment	Environmental → Aquatic → Sediment	5.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.14%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.43%
Freshwater	Environmental → Aquatic → Freshwater	0.71%
Marine	Environmental → Aquatic → Marine	0.71%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	76.43%
Loam	Environmental → Terrestrial → Soil → Loam	13.57%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.43%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.71%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.71%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.71%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.71%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	37.86%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.43%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.14%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.43%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.29%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.43%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.71%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	32.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.00%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.43%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.00%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	5.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.29%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.86%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.86%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.43%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.43%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.71%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.71%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.71%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.71%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.71%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.71%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.71%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.71%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.71%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.71%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.71%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000579	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A01	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019996	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a2	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300020022	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021411	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025556	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027018	Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN575 (SPAdes)	Environmental	Open in IMG/M
3300027526	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes)	Host-Associated	Open in IMG/M
3300027576	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030945	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AP72_2010_repI_A01DRAFT_10214631	3300000579	Forest Soil	MRFFRELDPFVSHVAVAVFAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATVVLLVFAVGLWTGWHKDAISARLSRRHSELTRTIP
Ga0066672_107159951	3300005167	Soil	LNPLVSHIAVAALAIATWVFLIVPLWRRWRPRLLLISKNNLLKKRLAAATIVLLVFAVGLWTGWHKDAISARLSR
Ga0066677_107488151	3300005171	Soil	MRFFRELDPFASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVFLVFA
Ga0066680_109145941	3300005174	Soil	MRFFRELNPVASHVAVAALAIATWVFLIVPLWRRWRPTLLLLSKNNLLKKRLAAATIVL
Ga0066673_100848164	3300005175	Soil	MRFFRELDPFASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATI
Ga0066673_105126331	3300005175	Soil	MHFFRELDPLASYVAVAVLAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATI
Ga0066685_102571053	3300005180	Soil	LNPLVSHIAVAALAIATWVFLIVPLWRRWRPRLLLISKNNLLKKRLAAATIVLLVFAVGL
Ga0066678_103778083	3300005181	Soil	MRFFRELDPFASHAAVAALAIVTWIFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLLVF
Ga0066675_110697051	3300005187	Soil	MRFFRELDPFASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLLVFAVGLWTGWHKDAISARLSRWHSELTRTI
Ga0065707_109461982	3300005295	Switchgrass Rhizosphere	MRFFRELDPFASHVAVAALAIATWVFLIVPLWRRWRPKVALLSKNKLLKKRLAAATIVLLVFAVGLWTGWHKDAISA
Ga0070676_114792232	3300005328	Miscanthus Rhizosphere	MRSFRELGPFASYVAVAVLAIATWVFLIVPLWRRWRPRLPLLSKNNLLKKRLAAATIVLLVFAVG
Ga0066388_1001434391	3300005332	Tropical Forest Soil	MSFFRELNPIATHVAVAAFAIVTWVLLIVPLWRRLRPRLLLLSKDNLLKKRLAAATIVILVFAAGLWAGWHKDAIFAGLPRSHSE
Ga0066388_1028355263	3300005332	Tropical Forest Soil	MRFFRELNPFASHVAVAALAIATWIFLIVPLWRRWRPRLLLLSKNNLLKK
Ga0066388_1060620972	3300005332	Tropical Forest Soil	MRFFRELNPFASHVAVAVLAIATWIFLIAPLWRRWRPRLRLLSKNNLLKKRLAAASILLLVFAVGLWAGWQKNAISARLSRVHSELT
Ga0070710_108518272	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MHFFRELDPFASHVAVAALAIATWAFLIVPLWRRWRPRLLLLSKNNLLEKRLGAATIVLLVFAVGLWTGWHKDAISAR
Ga0066689_100572261	3300005447	Soil	MFRFDPIALIRELDPLASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVFLVFAVGLWTGWHKDAISARLSRWHS
Ga0070706_1005812543	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MRLRIGIQFSYDSSTIPMRFFRELDPFASHVAAAALAIATWVFLIVPLWRRWRPRLLLLGKNNLLKKRLAAATIVLLVFAVGLWTGWHKDAISARLSR
Ga0066697_107023352	3300005540	Soil	MRFFRELDPFASHVAVAALAIATWVFLIVPLWRRWRPKFLLLSKNNLLKKRLAAATIVLLVFAVGLWTGWHKDA
Ga0066701_100174281	3300005552	Soil	MRFFRELDPFASHVAVAALAIVTWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLLVFAVGLW
Ga0066701_101238581	3300005552	Soil	MRFFRELDPFASHVAVAALAIATWVFLIAPLWRRWRPRFLLLSKNNL
Ga0066695_101296704	3300005553	Soil	MRFFRELDPFASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLK
Ga0066695_101624624	3300005553	Soil	MRFFRELDPFASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLLVFALGLWTG
Ga0066692_100612764	3300005555	Soil	MRFFRELDPLASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIV
Ga0066692_107236562	3300005555	Soil	MRFFRELDPFASHVAVAALAIATWVFLIAPLWRRWRPRFLLLSKNNLLKKRLAAATTVVLLFAVGLWIGWHKDAISARLSRWHSELTRTI
Ga0066707_108098392	3300005556	Soil	MHFFRELNPLVSHIAVAALAIATWVFLIVPLWRRWRPRLLLISKNNLLKKRLAAATIVLL
Ga0066704_108743881	3300005557	Soil	MRFFRELDPLASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVFLVFAVGLW
Ga0066698_102576891	3300005558	Soil	MRFFRELDPFASHVAVAALAIATWIFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLLVFAV
Ga0066706_105643091	3300005598	Soil	MRFFRELDPFASHVAVAALAIVTWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIV
Ga0066706_113232571	3300005598	Soil	MRFFRELDPFASHVAVAALAIATWVFLIAPLWRRWRPRFLLLSKNNLLKKRLAAATIVLLVFAVGLWMGWHKDAISARLSRWHSELTRTIPSPSPSPSPLTLTESSV
Ga0066903_10001302110	3300005764	Tropical Forest Soil	MRFLRELDPIASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAVATIVLLVF
Ga0066903_1013952473	3300005764	Tropical Forest Soil	MRFFRELDPFASHAVVAVLAIATWVLLIAPLWRRWRPTLLLLTKNNLLKKRLAAATILLFVFAVGLWAGWHKDAISARLSRWHSE
Ga0066903_1028957522	3300005764	Tropical Forest Soil	MGFFRELNPVASHVAVAVLAIATWVFLIVPLWRRLRPRLLLLSKNNLLKKRLAAATIVLLVFAVGFWAGWHKDAISARLPRWHSELTRTIPSPSPSPGPLTLTESSVE
Ga0070717_121510881	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MRFFRELNPFASHMAVAALAIVTWVFLIVPLWRRWRPRLLLLSKNNLLRKRLAAATIVLLVFAVGLWTGWHRDAISARLSRPHSELTRTISSPSPSPGPPTPTESSVEA
Ga0066651_107965141	3300006031	Soil	MEFFRELNPVASHVAVAALAIATWIFLIVPLWRTLRPRLLLLSKNNLLKKRLAAASVVLLVFAVGLWAGWH
Ga0066696_100350684	3300006032	Soil	MFRFDPIALIRELDPLASHVAVAALAIAAWVFLIVPVWRRWRPRLLLLSKNNLLKKRLAAATIVFLVFAVGLWTGW
Ga0066696_110749261	3300006032	Soil	MHFFRELNPLVSHIAVAALAIATWVFLIVPLWRRWRPRLLLISKNNLLKKRLAAATIVLLVFAVGLWTGWHKDAISARLSRRHSELTRTIP
Ga0066652_1009902571	3300006046	Soil	MHFFRELDPFARDVAVAALAIATWVFLIVPLGRRWRPRLLLLSKNNLLKKRLGAATIVLLVFAVGLWTGWHKDAISARLSRWHSELTR
Ga0070716_1000062561	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MGFFRELNPFASHVAVAVLAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVL
Ga0070712_1000801494	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MRFFRELDPFASYVAVAALAIVTWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLFVFAVGLWTGWHKDAISAR
Ga0070712_1004913902	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MHFFRELDPFASHVAVAALAIATWAFLIVPLWRRWRPRLLLLSKNNSLEKRLGAATIVLLVFAVGLWTGWHKDAISARLSRW
Ga0066653_100198885	3300006791	Soil	MRFFRELDPFASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLLVFAVGLWTGWHRDAISARLSRWHSELTRTIPSPSPSPSPLTLTESSVEAMAQ
Ga0066658_107113622	3300006794	Soil	MGFFRELNPVASHVAVAVLAIATWIFLIVPLWRRWRSRLFLLSENNLLKKRLAAASIVLLVFAAGLWA
Ga0066658_108033841	3300006794	Soil	MRFFRELDPFASHVAVAALAIATWVFLIAPLWRRWRTRLLLLSKNNLLNKRLADATIVLLVF
Ga0066665_105933422	3300006796	Soil	MRISYDSSTLEAGVIPMRFFRELNPVASHVAVAALAIATWVFLIAPLWRRWRPRLLLVSKNNLLKKRLAAATIVLLVFAVGLWTGWHKDAIS
Ga0066665_115144821	3300006796	Soil	MRFFRELDPFASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKK
Ga0066659_115370401	3300006797	Soil	MRFLRELNPLASHVAVAALAIATWIFLIVPLWRRWRSRFLLLSKNNLLKRRLAAATILLLVFAVGLWTGWHKDVI
Ga0075433_112513561	3300006852	Populus Rhizosphere	MRFFRELDPIASHVAVAALAIATWVLLIVPLWRRWRPRLSLLSRNNLLKKRLATATIVLLVFAVGLWTGWHKDAISARLSRWHSELTR
Ga0075425_1028284191	3300006854	Populus Rhizosphere	MRFFRELTPFASHVAVAALAIVTWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLLVFAVGLWTGWHKDAISARLSRWHSELTRT
Ga0099791_106917401	3300007255	Vadose Zone Soil	MRFFRELDPFASHVAVAALAIATWVFLIVPLWKRWRPRLLLLSKNNLLKKRLGAATIVLL
Ga0066710_1019923051	3300009012	Grasslands Soil	MRFFRELDPFASHVAVAALAIATWIFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLLVFAVG
Ga0066709_1005991452	3300009137	Grasslands Soil	MRFFRELDPFASHVAVAALAIATWVFLIAPLWRRWRPRFLLLSKNNLLKKRLAAATIVLLVFAVGLWMGWHKDAISARLSRWHSELT
Ga0066709_1011912611	3300009137	Grasslands Soil	MRFLRELNPLASHVAVAALAIATWIFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLLVFAVGLWMGWHKD
Ga0126308_106264551	3300010040	Serpentine Soil	MRFFRELDPVASHVAVAVLAIATWAFLIVPLWRRWRPKLHLLSKNNLLKKRLAAATVVLLVFAVGLWTGWHKQEISARLSGWHSDLTRTLPSPSPSPGP
Ga0126380_117775402	3300010043	Tropical Forest Soil	MRFLRELDPIASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAVATIVLLVFAAGLWTGWHKD
Ga0126384_117492431	3300010046	Tropical Forest Soil	MGFFRELNPVASHVAVALLAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAAT
Ga0134071_103067441	3300010336	Grasslands Soil	MVAGANRFLRKLFIPMRFFRELDPFASHVAVAALAIATWIFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLLVFAAGLWAGWHKDAISARLPRWHN
Ga0126376_101938381	3300010359	Tropical Forest Soil	MAVWQIRQLDPIASHVIVAVLAVAAWAFLIVPLWRRCRPRLLLLSKNKSARRRFAIGAGTLLVFALGLWIGWHRDAISARLSLWHGELTLTIPSPSPSPSPLK
Ga0126378_125903561	3300010361	Tropical Forest Soil	VIGIQFSYNSSTISMRFFRELDPFASHVAVAALAIVTWVFVIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLLVFAVGLWTGWHKDAISARLSRWHSELTRTI
Ga0134066_104078071	3300010364	Grasslands Soil	MRFFRELDPFTSHVAVAALAIATWVFLIIPLWRRCRPRLLLLSKNNLLKKRLAAATVVLLVFAVGLWAG
Ga0126379_109483592	3300010366	Tropical Forest Soil	MRFFRELDPVASHVAVAVLAIVTWVFLIVPLWRRWRPKLLLLSKNKLLKRRLAAATIVLLVFAVGLWTGWHKDAISARLSRWHSELTRTIAYPSRTPGPLTLTES
Ga0134128_127510261	3300010373	Terrestrial Soil	MRFFRELDPFASHVAVAALAIATWAFLVVPLWRRWRPRFLLLGKNTLLKKRLAAATIVLLVFAVGLWTGWHKEAISARLSRWHSELTRTIPSPSPSPSPL
Ga0126381_1002816681	3300010376	Tropical Forest Soil	MAVWQIRQLDPIASHVIVAVLAVAAWAFLIVPLWRRCRPRLLLLSKNKSARRRFAIGAGTLLVFALGLWIGWHRDAISARLSLWHGELTLTIPSPSPSPSPLKLTGS
Ga0126381_1003091084	3300010376	Tropical Forest Soil	MRFFRELNPVASHVAVAALAIATWVFLIVPLWKRWRPRLLLLRKNNLLKKRLAAATIVLLVFALGLWTGWHKDAISARLPRWHS
Ga0126381_1008913253	3300010376	Tropical Forest Soil	MRFFRELNPLASHMAVAVLAIATWAFLIVPLWRRWRPRLVLLSKNNVL
Ga0126383_127485891	3300010398	Tropical Forest Soil	MRFFRELDPFVSHVAVAAFAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLLVFAAGL
Ga0124844_11467651	3300010868	Tropical Forest Soil	MRFFRELNPVASHVAVAALAVATWVFLIVPLWRRWRPGLLLLSKNNLLKKRLAAATIVLLVFAGGLWTGWHKDAISARLPRWHSELTRTI
Ga0137389_112826162	3300012096	Vadose Zone Soil	MRFFRELDPFASHVAVAALAIATWVFLIVPLWRRWRPRLFLLSKSNLLKKRLAAATIVLLVFAVGLWTGWHKDAI
Ga0137364_104412423	3300012198	Vadose Zone Soil	MHFFRELDPFARDVAVAALAIATWVFLIVPLGRRWRPRLLLLSKNNLLKKRLGAATIVLLVFAVGLWTGWHKDAISARLSRWHSELTRIIPSPSPSPSPLTLTESSV
Ga0137363_102110663	3300012202	Vadose Zone Soil	MRFFRELNPFASHMAVAALAIATWVFLIVPLWRRWRPGLLLLSKNNLLKKRLAAATIVLLVFAVGLWTGWHKDAISAR
Ga0137376_105059251	3300012208	Vadose Zone Soil	MRFFRELDPLASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLLVFAVGLWTGWHKDAISARLSRWHSELTRTIPSP
Ga0137378_104775983	3300012210	Vadose Zone Soil	MRFFRELDPFASHVAVAALAIATWVFLIVPLWRRWRPRFLLLSKNNLLKKRLVAATIVILVFAVGLWTGWHKDAMSARLSRWHSELARTIASPSASPSPLTL
Ga0137358_109960781	3300012582	Vadose Zone Soil	MRFFRELDPFASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKR
Ga0137396_105994423	3300012918	Vadose Zone Soil	MRFFRELDPFASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLLVFAVGLWTGWHKDAMSARLSRWHSEL
Ga0137359_104357651	3300012923	Vadose Zone Soil	MRFFRELDPFASHVAVAALAIAMWVFLIIPLWRRWRPRLLLLSKNNLLKKRLAAATIVLLVFAVGLWTG
Ga0137410_119907172	3300012944	Vadose Zone Soil	MRFFRELDPFASHVAVAALAIATWVFLIVPLWRRWRARLLLLSKNNLLKKRLA
Ga0164299_104995631	3300012958	Soil	MRFFRELDPFASHMAVAVFAIVTWVFLIVPLWRRWRPGFLLLSKNNLLKKRLVAATIVIL
Ga0134075_103310521	3300014154	Grasslands Soil	MFRFDPIARIRELDPLASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVFLVFAVGLWTGWHKDAISARLSRWHSELTRTIPSRSPSP
Ga0137412_102173613	3300015242	Vadose Zone Soil	MRFFRELDPFASHVAVAVLAIATWAFLIVPLWRRWRPKVALLSKNNLLKKRLAAATIVLLVFAVG
Ga0132255_1049914712	3300015374	Arabidopsis Rhizosphere	MRFFRELDPFASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAA
Ga0134074_10960951	3300017657	Grasslands Soil	MFRFDPIALIRELGPLASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKRRLAAATIVLLVFAVGLWTGWHKDAISARLSRWHSELTRTIPSP
Ga0184605_103212141	3300018027	Groundwater Sediment	MRFFRELDPFASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLLVFAVGLWTGWHKDAISARLSRWHSELTRTIPSPSPSPSP
Ga0184620_102483091	3300018051	Groundwater Sediment	MRFFRELDPFASHVAVAGLAIATWVFLIVPLWRRSRPRLLLLSKNNLFKKRLAATTIVLLVFAV
Ga0184619_101486642	3300018061	Groundwater Sediment	MRFFRELNPFASYMAVAALAIATWVFLIVPLWKRWRPRLLLLSKNNLLKKRLAAATIVLLVFAVGLWTGWHKDAISARLSRWHSELTRTI
Ga0184618_102062781	3300018071	Groundwater Sediment	MRFFRELDPFASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLLVFAVGLWMGWHKNAISARLSRWHSELTRTIPSP
Ga0066655_109643832	3300018431	Grasslands Soil	MRFFRELDPFASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIV
Ga0066667_108288872	3300018433	Grasslands Soil	MRFLRELNPLASHVAVAALAIATWIFLIVPLWRRWRPRFLLLSKSNLLKRRLATATIVLLVFAVGLWTGWHKDAISARLSRWH
Ga0066667_114237641	3300018433	Grasslands Soil	MRFFRELNPVASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLLVFAVGLWTGWHKDAISARLSRWHSEL
Ga0066669_120530101	3300018482	Grasslands Soil	MRFFRELDPFTSHVAVAALAIATWVFLIVPLWRRCRPRLFLLSKDNLLKKRLAAATIVLLVFAVGLW
Ga0193693_10204751	3300019996	Soil	MRFFRELDPFASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLLVFAVGLWTGWHKDAISARLSRWHSELTRTIPSPS
Ga0193735_11319641	3300020006	Soil	MRFFRELDPFASHVAVAALAIATWAFLIVPLWRRWRPKVALLSKNNLLKKRLAAATIVLLVFAVGLWTGWHK
Ga0193733_12028121	3300020022	Soil	MRFFRELDPFASHVAVAALAIATWAFLIVPLWRRWRPKVALLSKNNLLKKRLAAATVVLLVFAVGLWTGWHKDAISARLSRWHSEL
Ga0179594_100708171	3300020170	Vadose Zone Soil	MRFFRELDPFASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLLVFAVGLWTGWHRDAISARLSRWHSELTR
Ga0179594_100905461	3300020170	Vadose Zone Soil	MRFFRELNPFASYMAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLLVFAVGLWTGWHKDAISARLSRPHSELTRTIPS
Ga0210401_115471631	3300020583	Soil	MRFFRELEPFASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLL
Ga0210382_102020551	3300021080	Groundwater Sediment	MRFFRELNPFASYMAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLLVFAVGLWTGWHKDAISARLSRWHSELTRTIPSPSPSP
Ga0193719_100118188	3300021344	Soil	MRFFRELDPFASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLLVFAVGLWTGWHKDAI
Ga0193719_100834144	3300021344	Soil	MRFFRELDPFASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLA
Ga0193719_101302001	3300021344	Soil	MRFFRELDPFASHVAVAGLAIATWVFLIVPLWRRSRPRLLLLSKNNLLKKRLAAATIVLLVFAVGLWTGWHKDAI
Ga0193709_10323292	3300021411	Soil	MLSHEASIIAMGLFRELHPFASHVAVAALAIATWVFLIVPLWRRWRPRLPLLSKNNLLKKRLVAAIIVLLVFAVGLWTGWHKDAISARLSRGHSELTR
Ga0193709_10331183	3300021411	Soil	MRFFRELDPFASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLLVFAVGLWTGWHKDAISARLSRWHSELTQTI
Ga0193709_10957181	3300021411	Soil	MRFFRELDPFASHVAVAVLAIATWVFLIVPLWRRLRPRFLLLSKDNLLKKRLA
Ga0224452_11679842	3300022534	Groundwater Sediment	MRFFPELDPFASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIALVVFAVGL
Ga0222623_103902841	3300022694	Groundwater Sediment	MRFFRELNPFASHTAAAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAA
Ga0222622_112123671	3300022756	Groundwater Sediment	MRFFRELDPFASHVAVAAFAIATWVFLIVPLWRRWHPRLLLLSKNNLLKKRLAAGTIVLLVFAVGLWMGWHKDAISARLSRWHSELTRTIPS
Ga0210120_10001941	3300025556	Natural And Restored Wetlands	MRFFQELDPLASHLAIAVLAIVIWVLIIAPLFRRWRPRLLLLSRNNLLKRRLVAATIVILVFAVGLWIGWHKDAISA
Ga0207701_116006201	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MRFFRELDPFASHVAVAALAIATWAFLVVPLWRRWRPKVALLSKNNLLKKRLAAATVVLLVFAVGLWTGW
Ga0209055_10857901	3300026309	Soil	MRFFRELDPFASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLLVFAVGLWTGWHKDAMSARLSRWHSELTRTIPSPSPSPSPLTLTGSSVEAMA
Ga0209472_12584031	3300026323	Soil	MHFFRELNPLVSHIAVAALAIATWVFLIVPLWRRWRPRLLLISKNNLLKKRLAAATIVLLVFAVGLWAGWHKDAVSAG
Ga0209472_12934802	3300026323	Soil	MRFFRELDPFASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLLVFAVGLWTGWHK
Ga0209470_10056641	3300026324	Soil	VRFFRELDPFASHVAVAALAIATWVLLIVPLWRRWRPRLLLLSKNNLLKKRLVAATI
Ga0209801_10918263	3300026326	Soil	MRFFRELDPFASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLVFAVGL
Ga0209266_10081797	3300026327	Soil	VRFFRELDPFASHVAVAALAIATWVLLIVPLWRRWRPRLLLLSKNNLLKKRLVAATIVLLVFAVGLWTGWHKDAISARLSRWHSELTRTIPSPSPSPSPLTLTE
Ga0209158_10378531	3300026333	Soil	MRFFRELDPFASHVAVAALAIVTWVFLIVPLWRRWRPRLLLLSKNNLLKKQLAAATIVLLVFAVGLWMGWHKDAISARLSRWHSELTQTIPS
Ga0209377_10147571	3300026334	Soil	MRFFRELDPFASHVAVAALAIVTWVFLIVPLWRRWRPRLLLLSKNNLLKKQLAAATIVLLVFAVGLWMGWHKDAISARLSRWHSELTQTIPSASP
Ga0209057_11374142	3300026342	Soil	MRFFRELDPFASHVAVAALAIATWVFLIVPLWRRWRPRFLLLSKNNLLKKRLAAATIVLLLFAVGLW
Ga0209159_10393441	3300026343	Soil	MRFFRELDPFASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLVFAVG
Ga0209806_11033341	3300026529	Soil	MFRFDPIALIPELDPLASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVFLVFAVGLWTGWHKDAISARLSRWHSKLT
Ga0209157_10729501	3300026537	Soil	MRFFRELDPFASHVAVAALAIATWIFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVL
Ga0209376_10492041	3300026540	Soil	MRFFRELDPFASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLVFAVGLWT
Ga0209161_101182333	3300026548	Soil	MRFFRELNPVASHVAVAALAIATWVFLIVPLWRRWRPSLLLLSKNNLLKKRLAAATIVLLVFAVGLWVGWHKDAISARLPRRHSELTRTIPSPSSSPSP
Ga0209161_102474842	3300026548	Soil	MRFFRELDPFASHAAVAALAIVTWIFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLLVFAVGLWM
Ga0209161_104875861	3300026548	Soil	MRFFRELDPFASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLLVFAVGLWTGWHKDAMSARLSRWHSE
Ga0209577_102775623	3300026552	Soil	MRFFRELDPFASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLLVFTVG
Ga0208475_10256822	3300027018	Soil	MRFFRELDPFASHVAVAALAIATWVFLIVPLWRRWRPRLLLLNKNNLLKKRLAAATIVLLVFAVGLWTGWHKDAISARLSRWHSELTRTIPSP
Ga0209968_10652421	3300027526	Arabidopsis Thaliana Rhizosphere	MRFFRELDPFASHVAVAALAIATWVFLIVPLWEKMARPRLLLLSKNNLLKKRLAAATIVLLVFAVGLWTGWHKDAISARLSRWHSELTRTIPSPSPSPSPLTLTESSV
Ga0209003_10550961	3300027576	Forest Soil	MRFFRELNPFASHVAVAVLAIATWIFLIVPLWRRSRPRLLLLSKNNLLKKRLAAATIVLLVFAVGLWTGWHKDEISARLSRWHSELTRT
Ga0209488_104191161	3300027903	Vadose Zone Soil	MRFFRELDPFASHVAVAALAIAAWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAVATIVLLVFAVGLWTGWHKDAIS
Ga0307307_101778352	3300028718	Soil	MRFFRELDPFASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLLVFAVGLWTGWHRDAISA
Ga0307323_101933732	3300028787	Soil	MRFFRELDPFASYVAVAALAIATWVFLIVPLWSRGRPRLLLLSKNNLLKKRLAAATIALVVFAVGLWMGWHKDAISAR
Ga0307299_101175392	3300028793	Soil	MRFFRELNPFASHTAAAALAIATWVFLIVPLWRRLLLLSKNNLLKKRLAAAT
Ga0308309_102016843	3300028906	Soil	MRFFRELDPFASHVAVAALAIATWVFLIVSRWRRWRPRLLLLSKNNLLKKRLAAATIVLLVFAVGLWTGWHKDA
Ga0075373_116566542	3300030945	Soil	MRFLRELDPFASHVAVAALIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLLVFAVGLWTGWHKDAISARLS
Ga0170834_1041183481	3300031057	Forest Soil	MRFFRELDPFASYVAVAALAIATWVFLIVPLWRRWRPRFLLLSKNNLLKKRLAAATIVLFVFAVGLWTGWHKDAISARLARWHSELTRTIPSPSPS
Ga0170823_155755742	3300031128	Forest Soil	MRFFRELDPFASYVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLLVFAVGLWTGWH
Ga0307501_102709561	3300031152	Soil	MRFFRELDPFASHVAVAALAIATWVFLIVPLWRRCRPRLFLLSKDNLLKKRLAAATIVLLVFAVGLWAGWHKD
Ga0170824_1189276331	3300031231	Forest Soil	MRFFRELDPFVSHVAVAALAIVTWVFLVVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLLVFA
Ga0170820_148101141	3300031446	Forest Soil	MRFFRELDPFASHVAVAALAIATWVFLIVPLWRRWRPRFLLLSKNNLLKKRLAAATIVLL
Ga0170820_163484363	3300031446	Forest Soil	MRFFRELDPFASYVAVAALAIATWVFLIVPLWRRWRPRFLLPSKNNLLKKRLAAAT
Ga0170818_1060229151	3300031474	Forest Soil	MRFYRELDPFASHVAVAALAIATCVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLLVFA
Ga0307470_107522251	3300032174	Hardwood Forest Soil	MRFFRELDPFASHVAVAALAIATWVFLIVPLWRRWRPRLLLLSKNNLLKKRLAAATIVLLVFAVGLWTGWHKDAISARLSRWHS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F054305

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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