Metagenome / Metatranscriptome Family F054378

Basic Information
Family ID	F054378
Family Type	Metagenome / Metatranscriptome
Number of Sequences	140
Average Sequence Length	40 residues
Representative Sequence	VVMVDAVPMLPSGKHDIVRLRQELLRREQTEAESVTY
Number of Associated Samples	130
Number of Associated Scaffolds	140

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	98.57 %
Associated GOLD sequencing projects	124
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Most Common Taxonomy
Group	Bacteria (55.714 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (36.429 % of family members)
Environment Ontology (ENVO)	Unclassified (30.714 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (42.857 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 29.23% β-sheet: 10.77% Coil/Unstructured: 60.00%
Feature Viewer

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Pfam ID	Name	% Frequency in 140 Family Scaffolds
PF03979	Sigma70_r1_1	37.86
PF00140	Sigma70_r1_2	15.71
PF04542	Sigma70_r2	15.71
PF04545	Sigma70_r4	4.29
PF02634	FdhD-NarQ	1.43

COG ID	Name	Functional Category	% Frequency in 140 Family Scaffolds
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	69.29
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	15.71
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	15.71
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	15.71
COG1526	Formate dehydrogenase assembly factor FdhD, a sulfurtransferase	Energy production and conversion [C]	1.43

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	55.71 %
Unclassified	root	N/A	44.29 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	55.71 %
Unclassified	root	N/A	44.29 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	55.71 %
Unclassified	root	N/A	44.29 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	55.71 %
Unclassified	root	N/A	44.29 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	55.71 %
Unclassified	root	N/A	44.29 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	52.86 %
Unclassified	root	N/A	44.29 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.29 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	43.57 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.43 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.29 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	1.43 %
Nocardiopsaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae	0.71 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.29 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	1.43 %
Nocardiopsaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae	0.71 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.29 %
Mycobacterium tuberculosis complex	species group	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex	1.43 %
Nocardiopsaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae	0.71 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.29 %
Mycobacterium tuberculosis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	1.43 %
Nocardiopsaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae	0.71 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.71 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001545\|JGI12630J15595_10119790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	520	Open in IMG/M
3300001661\|JGI12053J15887_10627193	Not Available	511	Open in IMG/M
3300003505\|JGIcombinedJ51221_10093835	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1188	Open in IMG/M
3300003505\|JGIcombinedJ51221_10369112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	583	Open in IMG/M
3300003659\|JGI25404J52841_10008157	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2225	Open in IMG/M
3300004618\|Ga0068963_1039665	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	503	Open in IMG/M
3300005104\|Ga0066818_1023650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	526	Open in IMG/M
3300005332\|Ga0066388_108199886	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	521	Open in IMG/M
3300005445\|Ga0070708_100264707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	1616	Open in IMG/M
3300005555\|Ga0066692_10721641	Not Available	617	Open in IMG/M
3300005591\|Ga0070761_10743198	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	616	Open in IMG/M
3300005921\|Ga0070766_10671981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	699	Open in IMG/M
3300006162\|Ga0075030_100900697	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	697	Open in IMG/M
3300006163\|Ga0070715_10516198	Not Available	687	Open in IMG/M
3300006173\|Ga0070716_100931297	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	682	Open in IMG/M
3300006354\|Ga0075021_10214464	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae	1178	Open in IMG/M
3300006871\|Ga0075434_101248523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	754	Open in IMG/M
3300009090\|Ga0099827_10109616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2207	Open in IMG/M
3300009093\|Ga0105240_12047886	Not Available	594	Open in IMG/M
3300009524\|Ga0116225_1264135	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	771	Open in IMG/M
3300009525\|Ga0116220_10300164	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	707	Open in IMG/M
3300009553\|Ga0105249_11619279	Not Available	720	Open in IMG/M
3300009698\|Ga0116216_10659922	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	629	Open in IMG/M
3300010105\|Ga0127470_1099510	Not Available	554	Open in IMG/M
3300010112\|Ga0127458_1010397	Not Available	561	Open in IMG/M
3300010118\|Ga0127465_1137199	Not Available	634	Open in IMG/M
3300010119\|Ga0127452_1153778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	504	Open in IMG/M
3300010146\|Ga0126320_1144229	Not Available	667	Open in IMG/M
3300010343\|Ga0074044_10530169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	769	Open in IMG/M
3300010366\|Ga0126379_11171025	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	875	Open in IMG/M
3300011066\|Ga0138524_1070521	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	680	Open in IMG/M
3300011080\|Ga0138568_1041422	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	575	Open in IMG/M
3300011087\|Ga0138570_1102889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	750	Open in IMG/M
3300011120\|Ga0150983_13973716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1616	Open in IMG/M
3300011120\|Ga0150983_13988188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	757	Open in IMG/M
3300011120\|Ga0150983_15155462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	762	Open in IMG/M
3300012201\|Ga0137365_10588612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	816	Open in IMG/M
3300012210\|Ga0137378_10559607	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1052	Open in IMG/M
3300012364\|Ga0134027_1075558	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	813	Open in IMG/M
3300012379\|Ga0134058_1076118	Not Available	635	Open in IMG/M
3300012380\|Ga0134047_1210931	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	754	Open in IMG/M
3300012392\|Ga0134043_1140462	Not Available	650	Open in IMG/M
3300012406\|Ga0134053_1196853	Not Available	567	Open in IMG/M
3300012409\|Ga0134045_1342390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	777	Open in IMG/M
3300012500\|Ga0157314_1039217	Not Available	565	Open in IMG/M
3300014501\|Ga0182024_11323779	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	834	Open in IMG/M
3300017942\|Ga0187808_10138185	Not Available	1070	Open in IMG/M
3300017995\|Ga0187816_10113451	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1166	Open in IMG/M
3300018090\|Ga0187770_11175819	Not Available	620	Open in IMG/M
3300019260\|Ga0181506_1033212	Not Available	520	Open in IMG/M
3300019279\|Ga0184642_1080257	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1615	Open in IMG/M
3300020069\|Ga0197907_10197414	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1326	Open in IMG/M
3300020076\|Ga0206355_1321051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1258	Open in IMG/M
3300021151\|Ga0179584_1330480	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	839	Open in IMG/M
3300021445\|Ga0182009_10588920	Not Available	594	Open in IMG/M
3300021474\|Ga0210390_10936021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	711	Open in IMG/M
3300021929\|Ga0213845_1195941	Not Available	543	Open in IMG/M
3300022499\|Ga0242641_1044626	Not Available	523	Open in IMG/M
3300022507\|Ga0222729_1057152	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	552	Open in IMG/M
3300022522\|Ga0242659_1005624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1598	Open in IMG/M
3300022527\|Ga0242664_1079280	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	646	Open in IMG/M
3300022709\|Ga0222756_1010822	Not Available	1043	Open in IMG/M
3300022722\|Ga0242657_1067621	Not Available	822	Open in IMG/M
3300024271\|Ga0224564_1040695	Not Available	893	Open in IMG/M
3300024283\|Ga0247670_1054612	Not Available	721	Open in IMG/M
3300024325\|Ga0247678_1047125	Not Available	693	Open in IMG/M
3300025633\|Ga0208480_1141540	Not Available	549	Open in IMG/M
3300025972\|Ga0207668_11548837	Not Available	598	Open in IMG/M
3300026327\|Ga0209266_1257259	Not Available	559	Open in IMG/M
3300027174\|Ga0207948_1032675	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	624	Open in IMG/M
3300027812\|Ga0209656_10178711	Not Available	1043	Open in IMG/M
3300027894\|Ga0209068_10605643	Not Available	638	Open in IMG/M
3300027903\|Ga0209488_10538566	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	853	Open in IMG/M
3300027915\|Ga0209069_10453196	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	713	Open in IMG/M
3300028138\|Ga0247684_1040239	Not Available	750	Open in IMG/M
3300028145\|Ga0247663_1082909	Not Available	572	Open in IMG/M
3300028717\|Ga0307298_10219569	Not Available	562	Open in IMG/M
3300029944\|Ga0311352_10158177	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1956	Open in IMG/M
3300029944\|Ga0311352_11490934	Not Available	506	Open in IMG/M
3300030528\|Ga0210277_10881961	Not Available	636	Open in IMG/M
3300030536\|Ga0210266_1191398	Not Available	608	Open in IMG/M
3300030539\|Ga0210281_1177131	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	561	Open in IMG/M
3300030573\|Ga0210272_1037397	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	888	Open in IMG/M
3300030573\|Ga0210272_1295359	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	520	Open in IMG/M
3300030575\|Ga0210288_1196269	Not Available	566	Open in IMG/M
3300030578\|Ga0210275_10032825	Not Available	1028	Open in IMG/M
3300030578\|Ga0210275_10372825	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	517	Open in IMG/M
3300030583\|Ga0210262_1092243	Not Available	710	Open in IMG/M
3300030586\|Ga0265393_1107218	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	641	Open in IMG/M
3300030588\|Ga0210283_1060913	Not Available	538	Open in IMG/M
3300030594\|Ga0210280_1029907	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	831	Open in IMG/M
3300030596\|Ga0210278_1048126	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	805	Open in IMG/M
3300030597\|Ga0210286_1126989	Not Available	702	Open in IMG/M
3300030623\|Ga0265392_1147915	Not Available	603	Open in IMG/M
3300030625\|Ga0210259_11778336	Not Available	669	Open in IMG/M
3300030626\|Ga0210291_10700526	Not Available	892	Open in IMG/M
3300030627\|Ga0210269_10101204	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	804	Open in IMG/M
3300030627\|Ga0210269_10271685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	581	Open in IMG/M
3300030627\|Ga0210269_10340469	Not Available	533	Open in IMG/M
3300030629\|Ga0210268_1097760	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	804	Open in IMG/M
3300030632\|Ga0210250_10911303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	552	Open in IMG/M
3300030707\|Ga0310038_10274402	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	770	Open in IMG/M
3300030730\|Ga0307482_1033542	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1161	Open in IMG/M
3300030738\|Ga0265462_10092784	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1298	Open in IMG/M
3300030741\|Ga0265459_11699046	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	736	Open in IMG/M
3300030743\|Ga0265461_10240597	Not Available	1178	Open in IMG/M
3300030743\|Ga0265461_10538232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	979	Open in IMG/M
3300030743\|Ga0265461_11566740	Not Available	718	Open in IMG/M
3300030760\|Ga0265762_1086084	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	679	Open in IMG/M
3300030863\|Ga0265766_1007669	Not Available	729	Open in IMG/M
3300030963\|Ga0265768_103777	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	827	Open in IMG/M
3300030967\|Ga0075399_11488935	Not Available	623	Open in IMG/M
3300031057\|Ga0170834_111114432	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	1558	Open in IMG/M
3300031123\|Ga0308195_1048936	Not Available	608	Open in IMG/M
3300031231\|Ga0170824_103590392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	708	Open in IMG/M
3300031474\|Ga0170818_107339892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	829	Open in IMG/M
3300031708\|Ga0310686_112787332	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	690	Open in IMG/M
3300031713\|Ga0318496_10421893	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	737	Open in IMG/M
3300031715\|Ga0307476_10970911	Not Available	626	Open in IMG/M
3300031747\|Ga0318502_10195748	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1168	Open in IMG/M
3300031769\|Ga0318526_10239980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	741	Open in IMG/M
3300031779\|Ga0318566_10329609	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	754	Open in IMG/M
3300031780\|Ga0318508_1259079	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	500	Open in IMG/M
3300031792\|Ga0318529_10300396	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	747	Open in IMG/M
3300031798\|Ga0318523_10196546	Not Available	1007	Open in IMG/M
3300031866\|Ga0316049_121065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	530	Open in IMG/M
3300031891\|Ga0316039_119656	Not Available	505	Open in IMG/M
3300031896\|Ga0318551_10191665	Not Available	1128	Open in IMG/M
3300031939\|Ga0308174_11767470	Not Available	531	Open in IMG/M
3300031942\|Ga0310916_10497119	Not Available	1039	Open in IMG/M
3300031981\|Ga0318531_10105449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1244	Open in IMG/M
3300032008\|Ga0318562_10243307	Not Available	1044	Open in IMG/M
3300032009\|Ga0318563_10352394	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	796	Open in IMG/M
3300032076\|Ga0306924_10674125	Not Available	1163	Open in IMG/M
3300032119\|Ga0316051_1004367	Not Available	1014	Open in IMG/M
3300032515\|Ga0348332_11033000	Not Available	1266	Open in IMG/M
3300032829\|Ga0335070_11855281	Not Available	544	Open in IMG/M
3300033004\|Ga0335084_12120971	Not Available	546	Open in IMG/M
3300033550\|Ga0247829_11820919	Not Available	502	Open in IMG/M
3300034817\|Ga0373948_0045972	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	926	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.00%
Host-Associated	Host-Associated	5.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.14%
Aquatic	Environmental → Aquatic	7.86%
Plants	Host-Associated → Plants	5.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.00%
Freshwater	Environmental → Aquatic → Freshwater	5.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.57%
Sediment	Environmental → Aquatic → Sediment	2.86%
Peat	Environmental → Terrestrial → Peat	1.43%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.43%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.71%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	71.43%
Loam	Environmental → Terrestrial → Soil → Loam	10.00%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.57%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.14%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.43%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.43%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.43%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.43%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.71%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.71%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	40.71%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.14%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.86%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.14%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.14%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.43%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.43%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.43%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.43%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.43%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.43%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.43%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.71%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.71%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.71%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	36.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.14%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	7.14%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	5.71%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.71%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.57%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.14%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.14%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.43%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.43%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.43%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.43%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.43%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.43%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.71%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.71%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.71%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.71%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.71%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.71%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.71%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.71%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.71%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.71%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.71%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.71%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.71%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.71%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.71%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.71%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.71%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300003659	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300004618	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 55 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005104	Soil and rhizosphere microbial communities from Laval, Canada - mgHAC	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300010105	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010112	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010118	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010119	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010146	Soil microbial communities from California, USA to study soil gas exchange rates - JR-CA-SND metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300011066	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 3 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011080	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 53 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011087	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 55 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012379	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012380	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012392	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012406	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012409	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012500	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.4.old.080610	Host-Associated	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300019260	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020076	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v3)	Environmental	Open in IMG/M
3300021151	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_06_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021929	Metatranscriptome of freshwater microbial communities from pre-fracked creek in Pennsylvania, United States - DR:C (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022499	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-14-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022507	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022522	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022527	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022709	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024271	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5	Environmental	Open in IMG/M
3300024283	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK11	Environmental	Open in IMG/M
3300024325	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK19	Environmental	Open in IMG/M
3300025633	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300027174	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF040 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028138	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK25	Environmental	Open in IMG/M
3300028145	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK04	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030528	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO135-VCO084SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030536	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO144-ARE043SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030539	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO151-VCO111SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030573	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO143-VCO036SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030575	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO747-VDE050SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030578	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO105-VCO054SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030583	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO145-ARE023SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030586	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO144-ARE041SO (Eukaryote Community Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300030588	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO740-VDE011SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030594	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO141-VCO089SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030596	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO135-VCO085SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030597	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO747-VDE046SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030623	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO144-ARE043SO (Eukaryote Community Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300030625	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO122-ANR120SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030626	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO410-VDE110SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030627	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO153-ARE095SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030629	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO153-ARE093SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030632	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO132-ANR004SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030738	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VDE Co-assembly	Environmental	Open in IMG/M
3300030741	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assembly	Environmental	Open in IMG/M
3300030743	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly	Environmental	Open in IMG/M
3300030760	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030863	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030963	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030967	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA11 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031123	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_196 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031866	Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSU5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300031891	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLA3 metaT (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032119	Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSE5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300034817	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12630J15595_101197901	3300001545	Forest Soil	LPRYAAPSRVVMVDAVPMLPTGKHDIVRLRQELLRREQTGAESVT*
JGI12053J15887_106271932	3300001661	Forest Soil	RYAIPSRVVMVDAVPMLPSGKYDIVRLRQELLRREQTEAESVNY*
JGIcombinedJ51221_100938351	3300003505	Forest Soil	LPRYAAPSRVVMVDAVPMLPSGKHDLARLRRELLPREQTEAENVTY*
JGIcombinedJ51221_103691122	3300003505	Forest Soil	PRYAAPSRVVMVDAVPMLPSGKHDLARLRRELLWREQSEAENVTY*
JGI25404J52841_100081573	3300003659	Tabebuia Heterophylla Rhizosphere	LPRYAIPSRVVMVDAVPMLPSGKYDLVRLRQELLRREQTEAESVTY*
Ga0068963_10396652	3300004618	Peatlands Soil	RLPRYAAPSRVVMVDAVPMLPSGKHDIVRLRQELLRREQTEAENVTY*
Ga0066818_10236502	3300005104	Soil	PRYAIPSRVVMVGAVPMLPSGKHDIVRLRQELLRREQTEAESVIY*
Ga0066388_1081998861	3300005332	Tropical Forest Soil	ERLPRYAIPSRVVMIDAVPMLPSGKHDTVRLRRELLRREQTEAESVNY*
Ga0070708_1002647071	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	SRVVMVDAVPMLPSGKHDIVRLRQELLRREQTEVESVIY*
Ga0066692_107216412	3300005555	Soil	MVDAVPMLPSGKHDIVRLRQELLRREQTEAESVTY*
Ga0070761_107431982	3300005591	Soil	PSRVVIVDAVPMLPSGKHDIARLKLELLRREQTEAENVS*
Ga0070766_106719811	3300005921	Soil	APSRVVIVDAVPMLPSGKHDIARLKLELLRREQTAAENVS*
Ga0075030_1009006972	3300006162	Watersheds	APSRVVMVDAVPMLPSGKHDIVRLRQELLRREQTEAENVT*
Ga0070715_105161981	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	VVMVDAVPMLPSGKHDIVRLRRELLRREQTEAESVT*
Ga0070716_1009312972	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	AAPSRVVMVDAVPMLPSGKHDIVRLRQELLRREQTEAENVT*
Ga0075021_102144641	3300006354	Watersheds	LELLRLHVRQRLPYYAAPSKIVMVDAVPMLPSGKHDLARLRRELLRREQTAAENVTY*
Ga0075434_1012485231	3300006871	Populus Rhizosphere	VVMVDAVPMLPSGKYDIVRLRQELLRREQTEAESVIY*
Ga0099827_101096161	3300009090	Vadose Zone Soil	SRVVTVDACPMLPSGKHDIVRLRLELLRREQTEAENVIL*
Ga0105240_120478861	3300009093	Corn Rhizosphere	SRVVMVDAVPMLPSGKYDIVRLRQELLRREQTEAESVTY*
Ga0116225_12641352	3300009524	Peatlands Soil	VDAVPMLPSGKHDLARLRRELLRREQTEAENVSN*
Ga0116220_103001642	3300009525	Peatlands Soil	VVMVDAVPMLPSGKHDIVRLRQELLRREQTEAENVT*
Ga0105249_116192792	3300009553	Switchgrass Rhizosphere	PRYAIPSRVVMVDAVPMLPSGKYDIVRLRQELLRREQTEAESVIY*
Ga0116216_106599221	3300009698	Peatlands Soil	RLPRYAAPSRVVMVDAVPMLPSGKHDLARLRRELPRREQTEAENVTN*
Ga0127470_10995102	3300010105	Grasslands Soil	VDAVPMLPSGKYDIVRLRQELLRREQTKAESVIY*
Ga0127458_10103971	3300010112	Grasslands Soil	VEAVPMLPSGKHDIVRLRQELLRREQTEAESVTN*
Ga0127465_11371992	3300010118	Grasslands Soil	VDAVPMLPSGKHDIVRLRQELLRREQTEAESVTY*
Ga0127452_11537781	3300010119	Grasslands Soil	VDAVPMLLSGKHDIVRLRQELLRREQTEAESVTN*
Ga0126320_11442291	3300010146	Soil	TVDAVPMLPSGKYDIVRLRQELLRREQTEAESVIY*
Ga0074044_105301692	3300010343	Bog Forest Soil	LLSMPVRARLPRYAPPSRVVMVDAVPMLLSGKHDIVRLRQELLRREQTEAENVT*
Ga0126379_111710251	3300010366	Tropical Forest Soil	RLPRYAAPSRVVMVDAVPLLPSGKHDLARLRRELLRREQTESESVTN*
Ga0138524_10705212	3300011066	Peatlands Soil	VFVDAVPLLPSGKQDIAGLRRELLRREQTEAESVTY*
Ga0138568_10414222	3300011080	Peatlands Soil	FVDAIPLLPSGKHDIAGLRRELLRREQTEAESVSY*
Ga0138570_11028892	3300011087	Peatlands Soil	FVDAVPLLPSGKQDIAGLRRELLRREQTEAESVTY*
Ga0150983_139737162	3300011120	Forest Soil	VVDAVPMLPSGKHDIARLKLELLRREQTEVENVS*
Ga0150983_139881882	3300011120	Forest Soil	VDAIPMLPSGKHDIARLRQELLRREQTEAENVNY*
Ga0150983_151554622	3300011120	Forest Soil	VEVDAIPMLPSGKHDIARLRQELLRREQTEAENVNY*
Ga0137365_105886122	3300012201	Vadose Zone Soil	VMVGAVPMLPSGKHDIVRLRQELLRREQTEAESVTY*
Ga0137378_105596072	3300012210	Vadose Zone Soil	VMVDAVPMLPSGKHDIVRLRQELLRREQTEAESVT*
Ga0134027_10755582	3300012364	Grasslands Soil	VDAVPMLPSGKYDIVWLRQELLRREQTEAESVTY*
Ga0134058_10761182	3300012379	Grasslands Soil	VDAVPMLPSGKHDIVRLRQELLRREQTEAESGTY*
Ga0134047_12109312	3300012380	Grasslands Soil	VDSVPMLPSGKHDIVRLRLELLRREQTEAESVIY*
Ga0134043_11404622	3300012392	Grasslands Soil	VDAVPMLLSGKHDIVRLRQELLRREQTEAESVTY*
Ga0134053_11968532	3300012406	Grasslands Soil	VMVDAVPMLPSGKHDIVRLRQELLRREQTEAESVIY*
Ga0134045_13423902	3300012409	Grasslands Soil	VMVDAVPMLPSGKHDIVRLRQELLRREQTEAASVIY*
Ga0157314_10392171	3300012500	Arabidopsis Rhizosphere	RLPRYAIPSRVVMVDAVPMLPSGKHDIVRLRRELLRREQTEAENVT*
Ga0182024_113237791	3300014501	Permafrost	IVDAVPMLPSGKHDIARLKLELLRREQTEAENVT*
Ga0187808_101381851	3300017942	Freshwater Sediment	LPRYAAPGRVVMVDAVPMLPSGKHDLARLRRELLRREQTEAESVTNYCPDNVPR
Ga0187816_101134512	3300017995	Freshwater Sediment	LPRYAAPSKMVVVDAIPMLPSGKHDIAQLRRELLRREQTGA
Ga0187770_111758192	3300018090	Tropical Peatland	PRYAAPSKVVMVDAVPMLPSGKHDIVRLRRELLRREQTEAESVS
Ga0181506_10332121	3300019260	Peatland	RVVIVDDVPVLPSGKHDIARLKLELLPREQTEAENVTY
Ga0184642_10802571	3300019279	Groundwater Sediment	VMVDAVPMLPSGKYDIVRLRQELLRREQTEAESVIY
Ga0197907_101974141	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	VMVDAVPMLPSGKYDIVRLRQELLRREQTEAESVTY
Ga0206355_13210512	3300020076	Corn, Switchgrass And Miscanthus Rhizosphere	MVDAVPMLPSGKYDIVRLRQELLRREQTEAESVTY
Ga0179584_13304801	3300021151	Vadose Zone Soil	RLPRYAAPSRVVMVDAVPMLSSGKHDIVRLRQELLRREQTEAESVIY
Ga0182009_105889202	3300021445	Soil	ERLPRYAIPRRVVMVDAVPMLPSGKYDIVRLRQELLRREQTEAESVIY
Ga0210390_109360212	3300021474	Soil	RVVEVDVIPMLPSGKHDIARLRLELLQREQTEAENVNY
Ga0213845_11959411	3300021929	Watersheds	MVDAVPMLPSGKHDIVRLRQELLRREQTEAESVTY
Ga0242641_10446261	3300022499	Soil	PRYASPSKIVMVDAVPMLSSGKHDIARLKLELLRREQNEAGSVS
Ga0222729_10571522	3300022507	Soil	VVMVDAVPMLPSGKHDIVRLRQELLRREQTEAESVTY
Ga0242659_10056242	3300022522	Soil	FVDAVPLLPSGKHDIAGLRRELLRREQTEAESVTY
Ga0242664_10792801	3300022527	Soil	RLPRYAAPSRIVMIDAVPMLPSGKHDLARLRRELLRREQSEAESVTN
Ga0222756_10108221	3300022709	Soil	LPRYAAPSRVVFVDAVPLLPSGKHDIAGLRRELLRREQTEAESVTY
Ga0242657_10676211	3300022722	Soil	RLPRYAAPSRVVMVDAVPMLPSGKHDIVRLRQELLRREQTEAESVTY
Ga0224564_10406951	3300024271	Soil	VMVDAVPMLPSGKHDIVRLRQELLRREQIEAENVT
Ga0247670_10546122	3300024283	Soil	YAIPSRVVMVDAVPMLPSGKYDIVRLRQELLRREQTEAESVTY
Ga0247678_10471251	3300024325	Soil	VVMVDAVPMLPSGKYDIVRLRQELLRREQTEAESVTY
Ga0208480_11415401	3300025633	Arctic Peat Soil	VKERLPRYASPSRVVVVDAVPLLPSGKYDIARLKLELLRREQTEAENVS
Ga0207668_115488371	3300025972	Switchgrass Rhizosphere	YAIPSRVVMVDAVPMLPSGKYDIARLRQELLRREQTEAESVTY
Ga0209266_12572592	3300026327	Soil	VRERLPRYAIPSRVVMVDAVPMLLSGKHDIVRLRQELLRREQTEAESVTN
Ga0207948_10326752	3300027174	Forest Soil	RYAAPSRVVMVDAVPMLPSGKHDLARLRRELLQREQSEAESVTY
Ga0209656_101787112	3300027812	Bog Forest Soil	APSKIVMVDAVPMLPSGKHDLARLRRELLRREQTAAENVNY
Ga0209068_106056432	3300027894	Watersheds	YAIPSRVVMVDAVPMLPSGKHDIVRLRQELLRREQTEAESVTY
Ga0209488_105385661	3300027903	Vadose Zone Soil	ASRVVMVDAVPMLPSGKHDIVRLRQELLRREQTEAESVIY
Ga0209069_104531962	3300027915	Watersheds	VVMVDAVPMLPSGKHDIVRLRQELLRREQTEAENVT
Ga0247684_10402392	3300028138	Soil	PRYAIPSRVVMVDAVPMLPSGKYDIVRLRQELLRREQTEAESVTY
Ga0247663_10829092	3300028145	Soil	LPRYAIPSRVVMVDAVPMLPSGKYDIVRLRQELLRREQTEAESVTY
Ga0307298_102195691	3300028717	Soil	RVVMVDAVPMLPSGKQDTVRLRQELLRREQTEAESVIY
Ga0311352_101581771	3300029944	Palsa	VVEAVPMLSSGKHDLPRLRRELLRREQTEAENVNY
Ga0311352_114909341	3300029944	Palsa	ASPSRVVIVDAVPMLPSGKHDIARLKLELLRREQTEAENVT
Ga0210277_108819611	3300030528	Soil	VVIIDAVPMLPSGKHDIVRLRQELLRREQTEAENVT
Ga0210266_11913982	3300030536	Soil	VVIVDAVPMLPSGKHDIARLKLELLLREQTEAENVS
Ga0210281_11771311	3300030539	Soil	IVMIDAVPMLPSGKHDLARLRRELLRREQSEAESVTY
Ga0210272_10373971	3300030573	Soil	VVIVDAVPMLPSGKHDIARLKLELLRREQTEAENVT
Ga0210272_12953591	3300030573	Soil	NRVVEVDAIPMLPSGKHDIARLRQELLQREQTEAENVTY
Ga0210288_11962691	3300030575	Soil	LRERLPRYAAPSRVVVVDAVPMLPSGKHDITRLKLDLLRREQTEAENVT
Ga0210275_100328251	3300030578	Soil	VVEVDAIPMLPSGKHDIARLRLELLRREQTEAENVNY
Ga0210275_103728252	3300030578	Soil	VVMVGAVPMLPSGKHDLVLLKRELLRREQSAAENVTN
Ga0210262_10922432	3300030583	Soil	QRLPRYAAPSRVVIVDAVPMLPSGKHDIARLKLELLLREQTEAENVS
Ga0265393_11072181	3300030586	Soil	RERLPRYAAPSRVVLVDAVPMLPSGKHDIARLKLELLRREQTESENVT
Ga0210283_10609131	3300030588	Soil	VVIVDAVPILPSGKHDIARLKLELLPREQTEAENVS
Ga0210280_10299072	3300030594	Soil	PSRVVIVDAVPMLPSGKHDIARLKLELLRREQTAAENVS
Ga0210278_10481262	3300030596	Soil	VVIVDAVPMLPSGKHDIARLKLELLRREQTESENVT
Ga0210286_11269891	3300030597	Soil	AAPSRVVIVDAVPMLPSGKHDIARLKLELLRREQTEAENVT
Ga0265392_11479152	3300030623	Soil	VIVDAVPMLPSGKHDIARLKLELLRREQTEAENVT
Ga0210259_117783361	3300030625	Soil	RVVIVDAVPMLPSGKHDITRLKLDLLRREQTEAENVT
Ga0210291_107005262	3300030626	Soil	VVMVDAVPMLPNGKHDIARLKLELLRREQTESENVP
Ga0210269_101012042	3300030627	Soil	VVVVDAVPMLPSGKHDIARLKLELLRREPTEVENVS
Ga0210269_102716852	3300030627	Soil	VMVDAVPMLPSGKHDLARLRRELLRREQTEAENVNY
Ga0210269_103404692	3300030627	Soil	PRYASPSRVVIVDAVPMLPSGKHDITRLKLDLLRREQTEAENVT
Ga0210268_10977602	3300030629	Soil	VVEVDAIPMLPSGKHDIARLRQELLRREQTEAENVNY
Ga0210250_109113032	3300030632	Soil	RVVVIDVIPMLVSGKHDLAGLRRELLRREQTEADSVPY
Ga0310038_102744021	3300030707	Peatlands Soil	IVMVDAVPMLPSGKHDLARLRRELLRREQTEAENVSN
Ga0307482_10335422	3300030730	Hardwood Forest Soil	VDAVPLLPGGKQDLARLRQDLTELGNTTGREQTEPSSVTN
Ga0265462_100927842	3300030738	Soil	VMVDAIPMLPSGKHDLARLRRELPRREQSEAESVTN
Ga0265459_116990461	3300030741	Soil	RVVVIDVIPMLVSGKHDLAGLRRELLRREQTEADSVIY
Ga0265461_102405971	3300030743	Soil	RLHVQQRLPRYAAPNRVVEVDAIPMLPSGKHDIARLRLELLRREQTEAENVNY
Ga0265461_105382322	3300030743	Soil	LPRYAAPSRVVFVDAVPLLPSGKHDIAGLRRELLRREQTESESVTY
Ga0265461_115667402	3300030743	Soil	LPRYAAPSRVVLVDAVPMLPSGKHDIARLKGDLLRREQIEA
Ga0265762_10860842	3300030760	Soil	PMLPSGKHDIARLRLELLQREQTEAENVNYLVPGL
Ga0265766_10076691	3300030863	Soil	RLPRYAAPSRVVLVDAVPALPNGKHDIARLKLDLLKREQTEAENVT
Ga0265768_1037772	3300030963	Soil	MVDAVPMLPSGKHDIVRLRQELLRREQTEAKSVIY
Ga0075399_114889352	3300030967	Soil	VVMVDAVPMLPSGKHDIVRLRQELLRREQTEAESVIY
Ga0170834_1111144321	3300031057	Forest Soil	RVVMIDAVPMLPSGKHDIARLRQELLRREQTEAENVT
Ga0308195_10489362	3300031123	Soil	MVDAVPMLPSGKYDIVRLRQELLRREQTEAESVIY
Ga0170824_1035903922	3300031231	Forest Soil	VMVDAVPMLPSGKHDLARLRRELLRREQSEAESVTN
Ga0170818_1073398922	3300031474	Forest Soil	VMVDAVPMLPSGKHDIVRLRQELLRREQTEAESVIY
Ga0310686_1127873322	3300031708	Soil	RLHVQQRLPRYAAPNRVVEVDVIPMLPSGKHDIARLRLELLRREQTEAENVNY
Ga0318496_104218932	3300031713	Soil	RYAIPSRVVMVDAVPMLPSGKHDIVRLRRELLRREQTEAESVTY
Ga0307476_109709111	3300031715	Hardwood Forest Soil	VMLDAVPMLPSGKHDIVRLRQELLRREQTEAESVT
Ga0318502_101957481	3300031747	Soil	RERLPRYAAPSRVVVVDAVPMLPSGKHDIAQIRRELPRREQTGAESVT
Ga0318526_102399802	3300031769	Soil	VVMVAAVPMLPSGKHDIVRLRQELLRREQTEAESVTY
Ga0318566_103296091	3300031779	Soil	SRIVMVDAVPMLPSGKHDIVRLRQELLRREQTEAESVTY
Ga0318508_12590791	3300031780	Soil	AIPSRVVTVDAVPMLPSGKHDIVRLRQELLRREQIEAESVTY
Ga0318529_103003961	3300031792	Soil	VMVDAVPMLPSGKHDIVRLRQELLRREQTEAESVTY
Ga0318523_101965461	3300031798	Soil	PSKVVMVDAVPMLPSGKHDLARLRQDLLRREQTEAESVTN
Ga0316049_1210652	3300031866	Soil	MIDAVPMLPSGKHDLARLRRELLRREQSEAESVTY
Ga0316039_1196561	3300031891	Soil	AAPSKIVMVDAVPMLSSGKHDIARLKLELLRREQNEAESVS
Ga0318551_101916651	3300031896	Soil	AIPSRVVMVDAVPVLPSGKHDIIRLREELLRREQTEAESVTY
Ga0308174_117674701	3300031939	Soil	RYAIPSRVVMVDAVPMLPSGKYDIVRLRQELLRREQTEAESVIY
Ga0310916_104971192	3300031942	Soil	ERLPRYAIPSTVVMVDAVPMLPSGKHDIVRLRQELLRREQTEAESVTY
Ga0318531_101054492	3300031981	Soil	VVMVDAVPMLPSGKHDLARLRQDLLRREQTEAESVTN
Ga0318562_102433072	3300032008	Soil	RYAIPSTVVMVDAVPMLPSGKHDIVRLRQELLRREQTEAESVTY
Ga0318563_103523942	3300032009	Soil	RYAIPSTVVMVDAVPMLPSGKHDIVRLRQELLQREQTEAESVIY
Ga0306924_106741252	3300032076	Soil	YAIPSTVVMVDAVPMLPSGKHDIVRLRQELLQREQTEAESVTY
Ga0316051_10043671	3300032119	Soil	VVFVDAVPLLPSGKHDIAGLRRELLRREQTEAESVTY
Ga0348332_110330002	3300032515	Plant Litter	PRYAAPSRVVLVDAVPALPNGKHDIARLKLDLLKREQTEAENVT
Ga0335070_118552812	3300032829	Soil	RIVTVDAVPMLPSGKHDIVRLKQELLRREQTEAESVTY
Ga0335084_121209711	3300033004	Soil	APSRVVMVDAVPMLPSGKHDTVRLRRELLRREQTEAESVT
Ga0247829_118209191	3300033550	Soil	YAIPSRVVMVDAVPMLPSGKYDIVRLRQELLRREQTEAESVIY
Ga0373948_0045972_790_924	3300034817	Rhizosphere Soil	RYAIPSRVVMVDAVPMLPSGKYDIVRLRQELLRREQTEAESVTY

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F054378

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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