Metagenome / Metatranscriptome Family F054390

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F054390
Family Type	Metagenome / Metatranscriptome
Number of Sequences	140
Average Sequence Length	84 residues
Representative Sequence	MSNAELFQRHPRMSLRPEQHFHIAAAYDKAAFDISLPAHTRAVFAKKADWFRLLARVGEKKEQVALAKQQAKEPQPNPFGFIAARH
Number of Associated Samples	99
Number of Associated Scaffolds	140

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	58.99 %
% of genes near scaffold ends (potentially truncated)	37.14 %
% of genes from short scaffolds (< 2000 bps)	87.14 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (68.571 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (21.429 % of family members)
Environment Ontology (ENVO)	Unclassified (34.286 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (57.143 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 45.61% β-sheet: 0.00% Coil/Unstructured: 54.39%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.58
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.58
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 140 Family Scaffolds
PF08734	GYD	3.57
PF13239	2TM	1.43
PF10028	DUF2270	1.43
PF08241	Methyltransf_11	0.71
PF00072	Response_reg	0.71
PF10544	T5orf172	0.71
PF07007	LprI	0.71
PF01544	CorA	0.71
PF13442	Cytochrome_CBB3	0.71
PF12244	DUF3606	0.71
PF13561	adh_short_C2	0.71
PF02673	BacA	0.71
PF07536	HWE_HK	0.71
PF00903	Glyoxalase	0.71
PF09361	Phasin_2	0.71

COG ID	Name	Functional Category	% Frequency in 140 Family Scaffolds
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	3.57
COG0598	Mg2+ and Co2+ transporter CorA	Inorganic ion transport and metabolism [P]	0.71
COG1968	Undecaprenyl pyrophosphate phosphatase	Lipid transport and metabolism [I]	0.71
COG3755	Uncharacterized conserved protein YecT, DUF1311 family	Function unknown [S]	0.71
COG3920	Two-component sensor histidine kinase, HisKA and HATPase domains	Signal transduction mechanisms [T]	0.71
COG4251	Bacteriophytochrome (light-regulated signal transduction histidine kinase)	Signal transduction mechanisms [T]	0.71

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.57 %
All Organisms	root	All Organisms	31.43 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.57 %
cellular organisms	root	All Organisms → cellular organisms	31.43 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.57 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	31.43 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.57 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	27.14 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.43 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.57 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	24.29 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.71 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.57 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	20.00 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.71 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.71 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.57 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	9.29 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	5.71 %
Synechococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	0.71 %
Cytophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia	0.71 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.57 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	9.29 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	3.57 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	0.71 %
Cytophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	0.71 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.71 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	0.71 %
Synechococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.57 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	9.29 %
Hyphomicrobium denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium denitrificans	3.57 %
Hymenobacteraceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae	0.71 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.71 %
Methyloceanibacter caenitepidi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	0.71 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.71 %
Synechococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.57 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	9.29 %
Hyphomicrobium denitrificans 1NES1	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium denitrificans → Hyphomicrobium denitrificans 1NES1	3.57 %
Hymenobacter	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae → Hymenobacter	0.71 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.71 %
Methyloceanibacter caenitepidi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	0.71 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.71 %
Synechococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	0.71 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090015\|GPICI_9050623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4091	Open in IMG/M
3300000890\|JGI11643J12802_10090453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1879	Open in IMG/M
3300000893\|AP72_2010_repI_A001DRAFT_1063215	Not Available	582	Open in IMG/M
3300000955\|JGI1027J12803_102848968	Not Available	581	Open in IMG/M
3300004114\|Ga0062593_101442110	Not Available	738	Open in IMG/M
3300004114\|Ga0062593_101761046	Not Available	679	Open in IMG/M
3300004114\|Ga0062593_102050587	Not Available	637	Open in IMG/M
3300004156\|Ga0062589_101736883	Not Available	624	Open in IMG/M
3300004157\|Ga0062590_100078337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1989	Open in IMG/M
3300005327\|Ga0070658_10628238	Not Available	931	Open in IMG/M
3300005331\|Ga0070670_100310397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1380	Open in IMG/M
3300005332\|Ga0066388_100920394	Not Available	1450	Open in IMG/M
3300005332\|Ga0066388_102108959	Not Available	1014	Open in IMG/M
3300005332\|Ga0066388_102500875	Not Available	938	Open in IMG/M
3300005332\|Ga0066388_102665577	Not Available	911	Open in IMG/M
3300005332\|Ga0066388_108231523	Not Available	520	Open in IMG/M
3300005365\|Ga0070688_101460448	Not Available	555	Open in IMG/M
3300005367\|Ga0070667_100055282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3352	Open in IMG/M
3300005439\|Ga0070711_100040416	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3145	Open in IMG/M
3300005439\|Ga0070711_101719849	Not Available	550	Open in IMG/M
3300005444\|Ga0070694_100700422	Not Available	823	Open in IMG/M
3300005456\|Ga0070678_102315352	Not Available	510	Open in IMG/M
3300005466\|Ga0070685_10645283	Not Available	766	Open in IMG/M
3300005544\|Ga0070686_100323539	Not Available	1150	Open in IMG/M
3300005545\|Ga0070695_100587644	Not Available	872	Open in IMG/M
3300005713\|Ga0066905_100133368	All Organisms → cellular organisms → Bacteria	1758	Open in IMG/M
3300005713\|Ga0066905_100153450	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1662	Open in IMG/M
3300005713\|Ga0066905_101512126	Not Available	611	Open in IMG/M
3300005718\|Ga0068866_10014680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3464	Open in IMG/M
3300005764\|Ga0066903_101261475	Not Available	1377	Open in IMG/M
3300005764\|Ga0066903_102364709	Not Available	1027	Open in IMG/M
3300005764\|Ga0066903_102540354	Not Available	992	Open in IMG/M
3300005764\|Ga0066903_104411441	Not Available	751	Open in IMG/M
3300005764\|Ga0066903_105642852	Not Available	658	Open in IMG/M
3300005764\|Ga0066903_106209046	Not Available	624	Open in IMG/M
3300005764\|Ga0066903_108072434	Not Available	539	Open in IMG/M
3300006163\|Ga0070715_10140048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1174	Open in IMG/M
3300006755\|Ga0079222_10046229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1989	Open in IMG/M
3300006845\|Ga0075421_101343027	Not Available	789	Open in IMG/M
3300006854\|Ga0075425_100255926	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	2014	Open in IMG/M
3300006854\|Ga0075425_100567479	Not Available	1306	Open in IMG/M
3300006854\|Ga0075425_101256204	Not Available	840	Open in IMG/M
3300006854\|Ga0075425_101628655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	727	Open in IMG/M
3300006871\|Ga0075434_100816448	Not Available	948	Open in IMG/M
3300007076\|Ga0075435_101935980	Not Available	517	Open in IMG/M
3300009036\|Ga0105244_10333686	Not Available	699	Open in IMG/M
3300009147\|Ga0114129_11271686	Not Available	913	Open in IMG/M
3300009176\|Ga0105242_12418546	Not Available	573	Open in IMG/M
3300009553\|Ga0105249_10035398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4530	Open in IMG/M
3300010043\|Ga0126380_10326749	Not Available	1105	Open in IMG/M
3300010043\|Ga0126380_10644321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium denitrificans → Hyphomicrobium denitrificans 1NES1	842	Open in IMG/M
3300010046\|Ga0126384_10142306	All Organisms → cellular organisms → Bacteria	1836	Open in IMG/M
3300010046\|Ga0126384_10615147	Not Available	953	Open in IMG/M
3300010047\|Ga0126382_10356229	Not Available	1124	Open in IMG/M
3300010047\|Ga0126382_10751945	Not Available	825	Open in IMG/M
3300010048\|Ga0126373_10374361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1442	Open in IMG/M
3300010048\|Ga0126373_10909769	Not Available	944	Open in IMG/M
3300010358\|Ga0126370_10831896	All Organisms → cellular organisms → Bacteria → Proteobacteria	826	Open in IMG/M
3300010358\|Ga0126370_12126578	Not Available	551	Open in IMG/M
3300010359\|Ga0126376_10074638	All Organisms → cellular organisms → Bacteria → Proteobacteria	2496	Open in IMG/M
3300010360\|Ga0126372_10002061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	8613	Open in IMG/M
3300010360\|Ga0126372_10268888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium denitrificans → Hyphomicrobium denitrificans 1NES1	1476	Open in IMG/M
3300010361\|Ga0126378_10628073	Not Available	1188	Open in IMG/M
3300010361\|Ga0126378_10709131	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae → Hymenobacter	1118	Open in IMG/M
3300010362\|Ga0126377_10118826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2439	Open in IMG/M
3300010362\|Ga0126377_11301544	Not Available	799	Open in IMG/M
3300010362\|Ga0126377_13023774	Not Available	543	Open in IMG/M
3300010366\|Ga0126379_10358792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium denitrificans → Hyphomicrobium denitrificans 1NES1	1491	Open in IMG/M
3300010376\|Ga0126381_101439880	Not Available	996	Open in IMG/M
3300010396\|Ga0134126_11762340	Not Available	679	Open in IMG/M
3300010396\|Ga0134126_11943784	Not Available	644	Open in IMG/M
3300010397\|Ga0134124_12146040	Not Available	597	Open in IMG/M
3300010398\|Ga0126383_10042355	All Organisms → cellular organisms → Bacteria → Proteobacteria	3727	Open in IMG/M
3300010398\|Ga0126383_10248693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1743	Open in IMG/M
3300010400\|Ga0134122_12815856	Not Available	539	Open in IMG/M
3300010863\|Ga0124850_1044725	Not Available	1398	Open in IMG/M
3300010868\|Ga0124844_1145209	Not Available	899	Open in IMG/M
3300011119\|Ga0105246_10243409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1423	Open in IMG/M
3300012212\|Ga0150985_105540770	Not Available	522	Open in IMG/M
3300012358\|Ga0137368_10618217	Not Available	687	Open in IMG/M
3300012469\|Ga0150984_100599669	Not Available	1040	Open in IMG/M
3300012582\|Ga0137358_10376532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	961	Open in IMG/M
3300012948\|Ga0126375_10092247	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	1768	Open in IMG/M
3300012971\|Ga0126369_10168095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2082	Open in IMG/M
3300012971\|Ga0126369_10360655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1479	Open in IMG/M
3300012971\|Ga0126369_11393557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium denitrificans → Hyphomicrobium denitrificans 1NES1	791	Open in IMG/M
3300013297\|Ga0157378_12450200	Not Available	574	Open in IMG/M
3300013306\|Ga0163162_11997671	Not Available	664	Open in IMG/M
3300014325\|Ga0163163_12554817	Not Available	568	Open in IMG/M
3300015374\|Ga0132255_101014830	Not Available	1245	Open in IMG/M
3300016294\|Ga0182041_10036850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	3195	Open in IMG/M
3300016294\|Ga0182041_10085869	All Organisms → cellular organisms → Bacteria	2265	Open in IMG/M
3300016341\|Ga0182035_10675664	Not Available	898	Open in IMG/M
3300016357\|Ga0182032_10375691	Not Available	1143	Open in IMG/M
3300016371\|Ga0182034_10007328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	5989	Open in IMG/M
3300016387\|Ga0182040_10338207	Not Available	1163	Open in IMG/M
3300016404\|Ga0182037_10209005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1519	Open in IMG/M
3300016422\|Ga0182039_10200045	Not Available	1593	Open in IMG/M
3300016445\|Ga0182038_10591932	Not Available	957	Open in IMG/M
3300016445\|Ga0182038_10849198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium denitrificans → Hyphomicrobium denitrificans 1NES1	802	Open in IMG/M
3300018465\|Ga0190269_12030149	Not Available	502	Open in IMG/M
3300020069\|Ga0197907_10286433	Not Available	576	Open in IMG/M
3300020080\|Ga0206350_10787865	Not Available	639	Open in IMG/M
3300020081\|Ga0206354_11553584	Not Available	547	Open in IMG/M
3300021560\|Ga0126371_10161891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2308	Open in IMG/M
3300021560\|Ga0126371_10443674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1443	Open in IMG/M
3300021560\|Ga0126371_10987991	Not Available	984	Open in IMG/M
3300022467\|Ga0224712_10214539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	879	Open in IMG/M
3300025906\|Ga0207699_10568450	Not Available	824	Open in IMG/M
3300026023\|Ga0207677_10433230	Not Available	1123	Open in IMG/M
3300026035\|Ga0207703_10396884	Not Available	1279	Open in IMG/M
3300026089\|Ga0207648_10403711	All Organisms → cellular organisms → Bacteria → FCB group	1239	Open in IMG/M
3300027775\|Ga0209177_10397208	Not Available	552	Open in IMG/M
3300027909\|Ga0209382_11462009	Not Available	683	Open in IMG/M
3300028380\|Ga0268265_10561041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1086	Open in IMG/M
3300028809\|Ga0247824_11142066	Not Available	500	Open in IMG/M
3300030905\|Ga0308200_1163680	Not Available	522	Open in IMG/M
3300031093\|Ga0308197_10271630	Not Available	612	Open in IMG/M
3300031573\|Ga0310915_10047470	Not Available	2760	Open in IMG/M
3300031573\|Ga0310915_10146458	Not Available	1631	Open in IMG/M
3300031744\|Ga0306918_10237174	Not Available	1388	Open in IMG/M
3300031744\|Ga0306918_10452710	Not Available	1003	Open in IMG/M
3300031797\|Ga0318550_10339608	Not Available	728	Open in IMG/M
3300031833\|Ga0310917_11075951	Not Available	537	Open in IMG/M
3300031854\|Ga0310904_10038970	All Organisms → cellular organisms → Bacteria → Proteobacteria	2283	Open in IMG/M
3300031879\|Ga0306919_10175661	Not Available	1579	Open in IMG/M
3300031910\|Ga0306923_10355259	Not Available	1671	Open in IMG/M
3300031910\|Ga0306923_10648975	Not Available	1180	Open in IMG/M
3300031912\|Ga0306921_10920978	Not Available	991	Open in IMG/M
3300031912\|Ga0306921_11051689	Not Available	915	Open in IMG/M
3300031941\|Ga0310912_11474562	Not Available	513	Open in IMG/M
3300031942\|Ga0310916_10304579	Not Available	1350	Open in IMG/M
3300031945\|Ga0310913_10566344	Not Available	806	Open in IMG/M
3300031946\|Ga0310910_10767827	Not Available	760	Open in IMG/M
3300032012\|Ga0310902_10297172	Not Available	993	Open in IMG/M
3300032035\|Ga0310911_10250898	Not Available	1013	Open in IMG/M
3300032054\|Ga0318570_10525563	Not Available	540	Open in IMG/M
3300033412\|Ga0310810_10260736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1898	Open in IMG/M
3300033412\|Ga0310810_11098378	Not Available	662	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	80.00%
Host-Associated	Host-Associated	20.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.00%
Plants	Host-Associated → Plants	20.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.86%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.43%
Roots	Host-Associated → Plants → Roots	0.71%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	61.43%
Loam	Environmental → Terrestrial → Soil → Loam	18.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.00%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.29%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.43%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.71%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.71%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.14%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.14%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.43%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.29%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.86%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.14%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.14%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.43%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.71%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.71%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	21.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.14%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	12.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.14%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.43%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.29%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.57%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.14%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.14%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.14%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.14%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.43%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.43%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.43%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.43%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.71%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.71%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.71%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.71%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.71%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090015	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000893	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A001	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009036	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020080	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300030905	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPICI_01431920	2088090015	Soil	MNHAKPLLMSVGAAYQRHPARMFLRPEQHSHIAAAYDKAAFDISLPAQTRAAFAKKADWFRLLARIGEKRERAALNAKPKALGATADPFGFIAASLT
JGI11643J12802_100904532	3300000890	Soil	MNHAKPLLMSVGAAYQRHPARMFLRPEQHSHIAAAYDKAAFDISLPAQTRAAFAKKADWFRLLARIGEKRERAALNAKPKALGATADPFGFIAASLT*
AP72_2010_repI_A001DRAFT_10632151	3300000893	Forest Soil	PRMSLRPEQHFHIAAAYDKAAFDISLPAHTRAVFAKKADWFRLLARVGEKKEQVALAKQQAKEPQPNPFGFIAARH*
JGI1027J12803_1028489682	3300000955	Soil	YPAKLSVGATAHPARMSLTAEQHSLIAAAYDSAAFNISLPAHTRAAFAKKADWFRLLARIGERIEQAALAKPKAQQPVSNPFWFIAA*
Ga0062593_1014421101	3300004114	Soil	MSNAELFQRHPRMSLRPEQHFHIAAAYDKAAFDISLPAHTRAVFAKKADWFRLLARVGEKKEQVALAKQQAKEPQPNPFGFIAARH*
Ga0062593_1017610463	3300004114	Soil	MNYAEPLLRGAAALSERHPARMFLRPEQQFHIAAAYDKAAFDTSLPAQTRTAFAKKADWFRLLARVGEKREQAAQQKAPEPNPFGFIAARL*
Ga0062593_1020505871	3300004114	Soil	MNYAEPLSQRHSARMCLTPEQHSHIAAAYDKAAFDMSLPSQTRAAFGKKADWFRLLARVGEKRAALNASEAKQAQESQPNPFGFIAAIRTGISPVC*
Ga0062589_1017368832	3300004156	Soil	MNHVEPLSQRHPARMSLRPEQHSHIAAAYDKAAFDISLPTQTRAAFAKKADWFRLLARVGEKRAAQKSQPNPFGFIATHL*
Ga0062590_1000783373	3300004157	Soil	MNYAEPLSQRHPVRMPLRPEQHSHIAATYDSAAFDISLPAHTRAAFAKKADWFRLLAHVGEKRKRAALNASAAKQIAPEPQPNPFGFISATHA*
Ga0070658_106282382	3300005327	Corn Rhizosphere	MSNVELFERHPAARMSLTPEQHSHIAAAYDKAAFDISFPAHTRAAFAKKADWFRLLARVGEKREQAGRPKQKAHEIESNPFGFIAAWH*
Ga0070670_1003103973	3300005331	Switchgrass Rhizosphere	GPFRGLTSKRAHMNPAKPMTVGAAALCQRHPARISLRPGQHFHIAAAYDKAAFDLSLPTHTRAAFAKKADWFRLLARIGEKCQRAAPSARVAKKSPADPFWFIAG*
Ga0066388_1009203941	3300005332	Tropical Forest Soil	MNYAEPLSQRHPARMPLSPQQHSHIAAAYDKAAFDISLPAHTRAAFAKKADWFRLLARVGEKRLQAALAKQKAQEPQANPFGFIAAGH*
Ga0066388_1021089592	3300005332	Tropical Forest Soil	MSLRPEQHSHIAAAYDQAAFDISLPAHTRAAFARKADWFRLLARVGEKKERAAIQKAYEIESNPFGFIAARH*
Ga0066388_1025008752	3300005332	Tropical Forest Soil	MSLTPEQHSHIAAAYDKAAFDISISAHTRAAFARKADWFRLRARVGKKIEAALAKQKAHETESNSFGFIAARH*
Ga0066388_1026655772	3300005332	Tropical Forest Soil	MSNAFQRHPRMSLRPEQHSHIAAAYDKAAFDTSFPAHTRAAFAKKADWFRLLACVGKKKEQAALAKPKDPFGFIAAMH*
Ga0066388_1082315232	3300005332	Tropical Forest Soil	MTYAKPLFMSAGAAALSELHPTRMSLSAEQHSLIAAAYDSAAFDVSLPAHARAAFAKKADWFRLLARVGQKREQAALVKQKAEEPQPNPFGFIEAKH*
Ga0070688_1014604481	3300005365	Switchgrass Rhizosphere	PAARMSLTPEQHSHIAAAYDKAAFDVSLPAHTRAAFAKKADWFRLLARVGEKREQAGRPKQKAHEIESNPFGFIAAWH*
Ga0070667_1000552822	3300005367	Switchgrass Rhizosphere	MSNVELFERHPAARMSLTPEQHSHIAAAYDKAAFDVSLPAHTRAAFAKKADWFRLLARVGEKREQAGRPKQKAHEIESNPFGFIAAWH*
Ga0070711_1000404166	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	AARMSLTPEQHSHIAAAYDKAAFDISFPAHTRAAFAKKADWFRLLARVGEKREQAGRPKQKAHEIESNPFGFIAAWH*
Ga0070711_1017198491	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MSNAELFQRHPRMSLRPEQHAHIAAAYDKAAFDISLPAHTRAAFARKADWFRLRAHVGKKIEQVVNQKAYETESNPFGFIAARH*
Ga0070694_1007004222	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MSNVELFERHPRMSLRPEQHSHIAAAYDSAAFDISFPAHTRAAFAKKADWFRLLARVGEKREQPGLPKQKAHEIESNPFGFIAAWH*
Ga0070678_1023153521	3300005456	Miscanthus Rhizosphere	MSHAELFQRHPRMSLGPEQHSHIAAAYDKAAFDISLPAHTRAAFARKADWFRLRARVGEKKERAALAKRKAHEIESNPFGFVAARH*
Ga0070685_106452831	3300005466	Switchgrass Rhizosphere	MSNVELFERHPAARMSLTPEQHSHIAAAYDKAAFDISFPAHTRAAFAKKADWFRLLARVGEKREQAGRPKQKAHEIESNPFGFIAARHYSPAA
Ga0070686_1003235391	3300005544	Switchgrass Rhizosphere	MSNVELFERHPAARMSLTPEQHSHIAAAYDKAAFDVSLPAQTRAAFAKKADWFRLLARVGEKREQAGRPKQKAHEIESNPFGFIAAWH*
Ga0070695_1005876441	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	HMSNVELFERHPAARMSLTPEQHSHIAAAYDKAAFDISFPAHTRAAFAKKADWFRLLARVGEKREQAGRPKQKAHEIESNPFGFIAAWH*
Ga0066905_1001333682	3300005713	Tropical Forest Soil	MSNAELFQHHPRMSLRPEQHFHIAAAYDKAALDISLPAHTRAVFAKKADWFRLLARVGEKKEQVALAKQQAKEPQPNPFGFIAARH*
Ga0066905_1001534503	3300005713	Tropical Forest Soil	MNPAKPMTVGAAALCQRHPARISLRPGQHFHIAAVYDKAAFDISLPGHTRAAFARKADWFRLLARVAEKRELAALMAQKAQEPPNPFGFITAPR*
Ga0066905_1015121262	3300005713	Tropical Forest Soil	MSNAEFQRHPRMSLRPEQHSHIAAAYDKAAFDTSLPAYTRAAFAKKAAWFRLLARIGEKKEQAALAKPKDPFGFIAAMH*
Ga0068866_100146808	3300005718	Miscanthus Rhizosphere	MSNVELFERHPRMSLRPEQHSHIAAAYDSAAFDISFPAHTRAAFAKKADWFRLLARVGEKREQAGRPKQKAHEIESNPFGFIAAWH*
Ga0066903_1012614751	3300005764	Tropical Forest Soil	MSLSAEQHSLIAAAYDSAAFDVSLPAHARAAFAKKADWFRLLARVGEKREQAALAKQKAQEPQPNPFGFIEPTH*
Ga0066903_1023647092	3300005764	Tropical Forest Soil	MSNAELFQRHPRMSLRPEQHSHIAAAYDKAAFDISLPAHTRAVFARKADWFRLLARVGEKREQAALMAREANPIAESALQNPFGFIAATHHSA*
Ga0066903_1025403541	3300005764	Tropical Forest Soil	MSYAEFQRHPRMSLRPEQHSHIAAAYVKAAFDTSLPAYTRVAFAKKAAWFRLLARVGEKKERAALAKQKAQEPQPNPFWFWGLQG
Ga0066903_1044114411	3300005764	Tropical Forest Soil	MYHAELLRSAAALPQRHSARMFLRPEQQFHIAAVYDKAAFDISLPAHTRAAFARKADWFRLLARVGEKKESLSRHKAREANPNPFGFIGSR
Ga0066903_1056428522	3300005764	Tropical Forest Soil	MTYAKPLFMSVGAATLSELHPTRMSLSAEQHSLIAAAYDSAAFDVSLPACARAAFAKKADWFRLLARVGQKREQAALAKQKAQEPQSNPFGFIEPTH*
Ga0066903_1062090462	3300005764	Tropical Forest Soil	MSNAFQRHPRMSLRPEQHSHIAAAYDKAAFDTSLPAHTRAAFAKKADWFRLLARVGEKKEQAALAKPKDPFGFIVAMH*
Ga0066903_1080724341	3300005764	Tropical Forest Soil	AFQRHPRMSLRPEQHSHIAAAYDKAAFDTSLPARTRAAFAKKAAWFRLLARVAKKKEQAALAKPKDPFGFIVAMH*
Ga0070715_101400483	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	VVGEQLLECHPRMSLRPEQHFHIAAAYDKAAFDISLPAHTRAVFAKKADWFRLLARVGEKKEQVALAKQQAKEPQPNPFGFIAARH*
Ga0079222_100462294	3300006755	Agricultural Soil	MSNVELFERHPRMSLRPEQHSHIAAAYDSAAFDISFPAHTRAAFAKKADWFRLLARVGEKREQAGRPKQKAHETESNSFGFIAAWH*
Ga0075421_1013430272	3300006845	Populus Rhizosphere	MSLTPEQHTHIAEAYDSAAFDIGLPAHTRVTFAKKADWFRLLARVGEKREQATLAKQKAQELEPNPFGFIAAMH*
Ga0075425_1002559263	3300006854	Populus Rhizosphere	MSLAFQRHPPMSLRPEQHSHIAAAYDKAAFDISLPTHTRAAFAKKADWFRLRARVGKKIEQAALAKQKAQGLQPNPFGFIT*
Ga0075425_1005674792	3300006854	Populus Rhizosphere	MSYAELFQRHPRMSLRPEQHSLIAAAYDKAAFDISLPAHTRAAFAKKADWFRLLARVGEKREQAGLAKQKAQEPEPNPFGFIAGWC*
Ga0075425_1012562042	3300006854	Populus Rhizosphere	MSYVELFQRHPRMSLRPEQHSHIAAAYDKAAFDISLPAHTRAVFAKKAEWFRLLAHIGEKREQAALAKQKAQDVPNPFGFIAAMH*
Ga0075425_1016286552	3300006854	Populus Rhizosphere	MNPAKPMTVGAAALCQRHPARISLRPGQHFHIAAAYDKAAFDISLPGHTRAAFARKADWFRLLARVAEKRERAALMAQKAQEPPNPFGFITAPR*
Ga0075434_1008164482	3300006871	Populus Rhizosphere	MSNVELFERHPRMSLRPEQHSHIAAAYDSAAFDISFPAHTRAAFAKKADWFRLLARVGEKREQAGRPKQKAHETESNPFGFIAAWH*
Ga0075435_1019359802	3300007076	Populus Rhizosphere	LTSKRAHMNPAKPMTVGAAALCQRHPARISLRPGQHFHIAAAYDKAAFDISLPGHTRAAFARKADWFRLLARVAEKRELAALMAQKAQEPPNPFGFITAPR*
Ga0105244_103336861	3300009036	Miscanthus Rhizosphere	PHMSNVELFERHPAARMSLTPEQHSHIAAAYDKAAFDVSLPAQTRAAFAKKADWFRLLARVGEKREQAGRPKQKAHEIESNPFGFIAG*
Ga0114129_112716862	3300009147	Populus Rhizosphere	MSLRPEQHSHIAAAYDKAAFDISLPTHTRAAFAKKADWFRLRARVGKKIEQAALAKQKAQGLQPNPFGFIT*
Ga0105242_124185461	3300009176	Miscanthus Rhizosphere	MSYVELFQRHPRMSLRPEQHSHIAAAYDKAAFDISLPAHTRAAFAKKADWFRLLARVGEKREQAGLAKQKAQEPEPN
Ga0105249_100353981	3300009553	Switchgrass Rhizosphere	MSLTPEQHSHIAAAYDKAAFDVSLPAQTRAAFAKKADWFRLLARVGEKREQAGRPKQKAHEIESNPFGFIAAWH*
Ga0126380_103267491	3300010043	Tropical Forest Soil	MYPAKLSVGATAHPARMSLSAEQHSLIAAAYDSAAFDVSLPAHTRAAFAKKADWFRLLACVGEKKERAALAKRTQEPQPNPFGFIAAMH*
Ga0126380_106443211	3300010043	Tropical Forest Soil	MSYAEFQRHPRMSLRPEQHSHIAAAYDKAAFDTSLPAHTRTAFAKKAAWFRLLARVAEKKEQAALAKPKDPFGFIAAMH*
Ga0126384_101423061	3300010046	Tropical Forest Soil	MSNAELFQRNPRMSLRPEQHFHIAAAYDKAAFDISLPAHTRAAFAKKADWFRLLARVGKKELAALAKQKPRNHSRIRLGSSPPSI
Ga0126384_106151472	3300010046	Tropical Forest Soil	PRMSLRPEQHFHIAAAYDKAAFDISLPAHTKAVFAKKADWFRLLARVGEKKEQVALAKQQAKEPQPNPFGFIAARH*
Ga0126382_103562291	3300010047	Tropical Forest Soil	MSNAELFQHHPRMSLRPEQHFHNAAAYDKAALDISLPAHTRAVFAKKADWFRLLARVAEKKEQVALAKEQAKEPQPNPFGFTA
Ga0126382_107519451	3300010047	Tropical Forest Soil	QRHPRMSLRPEQHSHIAAAYDKAAFDISLPAHTRAVFARKADWFRLLARVGEKREQAALMAREANPIAESALQNPFGFIAARH*
Ga0126373_103743612	3300010048	Tropical Forest Soil	MNPAKPMTVGAAALCQRHPARISLRPGQHFHIAAVYDKAAFDISLPGHTRSAFARKADWFRLLARVAEKRELAALMAQKAQEPPNPFGFITAPR*
Ga0126373_109097692	3300010048	Tropical Forest Soil	SLRPEQHFHIAAAYDKAALDISLPAHTRAVFAKKADWFRLLARVGEKKEQVALAKQQAKEPQPNPFGFIAARH*
Ga0126370_108318961	3300010358	Tropical Forest Soil	MSNAELFQHHPRMSLRPEQHFHIAAAYDTAALDISLPAHTRAVFAKKADWFRLLARVGEKKEQVALAKQQAKEPQPNPF
Ga0126370_121265782	3300010358	Tropical Forest Soil	MSLRPEQHSQIAAAYDKAAFDTSLPAHTRAAFAKKADWFRLLARVGEKKEQAALAKPKDPFGFIVAMH*
Ga0126376_100746383	3300010359	Tropical Forest Soil	MSNAELFQRHPRMSLRPEQHFHIAAAYDKAAFDISLPAHTKAVFAKKADWFRLLARVGEKKEQVALAKQQAKEPQPNPFGFIAARH*
Ga0126372_1000206110	3300010360	Tropical Forest Soil	MNYAEPLSQRHPARMLLSPQQHSHIAAAYDKAAFDISLPAHTRAAFAKKADWFRLLARVGKKRASGTRETKTQEPQPNPFGFIAAKH*
Ga0126372_102688881	3300010360	Tropical Forest Soil	MSNAEFQRHPRMSLRPEQHSHIAAAYDKAAFDTSLPGYTRAAFAKKAAWFRLLARIGEKKEQAALAKPKDPFGFIAAMH*
Ga0126378_106280731	3300010361	Tropical Forest Soil	MSNAELFQRHPRMSLRPEQHFHIAAAYDKAALDISLPAHTRAVFAKKADWFRLLARVGEKKEQVALAKQQAKEPQPNP
Ga0126378_107091313	3300010361	Tropical Forest Soil	MSNAEFQRHPRMSLRPEQHSHIAAAYDKAAFDTSLPAYTRAAFAKKAAWFRLLARIGEKKEQAALAKPKEPFGFIAAMH*
Ga0126377_101188263	3300010362	Tropical Forest Soil	MSNAELFQHHPRMSLRPEQHFHIAAAYDKAALDISLPAHTRAVFAKKADWFRLLACVGEKKEQVALAKQQAKEPQPNPFGFIAARH*
Ga0126377_113015441	3300010362	Tropical Forest Soil	MSLSPEQHSRIAATYHKAAFDMSLPAHTRAAFAKKENWFRLRARAGEMRERAALTKQTNPFWFIVARHQPRLPV*
Ga0126377_130237741	3300010362	Tropical Forest Soil	MYPAKLSVGAAALHQHHPARMSLSAEQHSLIAAAYDSAAFDVSLPAHTRAAFAKKADWFRLLARVGEKREQAALAKQKAQEPQPNPFGFVEPTH*
Ga0126379_103587922	3300010366	Tropical Forest Soil	MSLRPEQHSHIAAVYDKAAFDTSLPAYTRAAFAKKAAWFRLLARIGEKKEQAALAKPKDPFGFIAAMH*
Ga0126381_1014398801	3300010376	Tropical Forest Soil	MSLTPEQHSHIAAAYDKAAFDISLSAHTRAAFARKADWFRLRARVGKKIEAALAKQKAHETESNSFGFIAARH*
Ga0126381_1020249632	3300010376	Tropical Forest Soil	MSNAELFQRHPRMSLRPEQHFHIAAAYDKAAFDISLPAHTKAVFAKKADWFRLLARVGEKKEQVALAKQ*
Ga0134126_117623401	3300010396	Terrestrial Soil	MSLTPEQHSHIAAAYDKAAFDVSLPAQTRAAFAKKADWFRLRARVGKKIEQAALAKQKAQGLQPNPFGFIT*
Ga0134126_119437841	3300010396	Terrestrial Soil	MSNVELFERHPRMSLRPEQHSHIAAAYDSAAFDISFPAHTRAAFAKKADWFPLLARVGEKREQPGLPKQKAHEIESNPFGFIAAWH*
Ga0134124_121460401	3300010397	Terrestrial Soil	MSNVELFGRHPRMSLRPEQHSHIAAAYDSAAFDISFPAHTRAAFAKKADWFRLLARVGEKREQAGRPKQKAHETESNPFGFIAAWH*
Ga0126383_100423554	3300010398	Tropical Forest Soil	MSNAELFQHHPRMSLSPEQHFHIAAAYDKAALDISLPAHTRAVFAKKADWFRLLARVGEKKEQVALAKQQAKEPQPNPFGFIAARH*
Ga0126383_102486932	3300010398	Tropical Forest Soil	MNPAKPMTVGAAALCQRHPARISLRPGQHFHIAAVYDKAAFDISLPGHTRAAFARKADWFRLLARVAEKRERAALMAQKAQEPPNPFGFITAPR*
Ga0134122_128158562	3300010400	Terrestrial Soil	MSNVELFQRHPRMSLRPEQHSHIAAAYDSAAFDITFSAHTRAAFAKKADWFRLLARVGEKREQPGLPKQKAHEIESNPFGFIAAWH*
Ga0124850_10447251	3300010863	Tropical Forest Soil	MSLRPEQHSHIAAAYDKAAFDTSLPARTRAAFAKKAAWFRLLARVAKKKEQAALAKPKDPFGFIVAMH*
Ga0124844_11452092	3300010868	Tropical Forest Soil	MSNAELFQHHPRMSLRPEQHFRIAAAYDKAALDIGLPAHTRAVFAKKADWFRLLARVGEKKEQVALAKQQAKEPQPNPFGFIAARH*
Ga0105246_102434092	3300011119	Miscanthus Rhizosphere	MSNVELFERHPARMSLTPEQHSHIAAAYDKAAFDISFPAHTRAAFAKKADWFRLLARVGEKREQAGRPKQKAYEIESNPFGFIAAWH*
Ga0150985_1055407701	3300012212	Avena Fatua Rhizosphere	QEGPHMNNQLLSGAVALSQLHPARMSLRPEQCSHIAAAYDSAAFNISFPAQTRAAFAKKGDWFRLLARVGEKRAALNANEAKQAQEPQPNPFGFIAAMHTGISPA*
Ga0137368_106182171	3300012358	Vadose Zone Soil	RPEQHSHIAAAYDKAAFDISLPAQTRAAFAKKADWFRLLARIGEKRERAALNAKPKVLGATADPFEFIAANT*
Ga0150984_1005996693	3300012469	Avena Fatua Rhizosphere	MNNRAEPLLSGALSQLHPARMSLRPEQCSHIAAAYDSAAFNISFPAQTRAAFAKKGDWFRLLARVGEKRAALNANEAKQAQEPQPNPFGFIAAMHTGISPA*
Ga0137358_103765323	3300012582	Vadose Zone Soil	MNHFEPLSQRHPARMSLRPEQHSRIAAAYDKAAFDTSLPAQTRAAFSKKADWFRLLARVAEKRAALQEPQPNPFGFIAAIHTDISPA*
Ga0126375_100922471	3300012948	Tropical Forest Soil	MYPAKLSVGATAHPARMSLSAEQHSLIAAAYDSAAFDVSLPAHARAAFARKADWFRLLARVGEKREQAALAKQKAQEPQPNPFGFIEPTH*
Ga0126369_101680953	3300012971	Tropical Forest Soil	MNPAKPMTVGAAALCQRHPARISLRPGQHFHIAAVYDKAAFDISLPGHTRAAFARKADWFRLFARVAEKRELAALMAQKAQEPPNPFGFITAPR*
Ga0126369_103606552	3300012971	Tropical Forest Soil	MSLTPEQHSHIAAAYDKAAFDISLSAHTRAAFARKADWFRLRARIGKKIEAALAKQKAHETESNSFGFIAARH*
Ga0126369_113935571	3300012971	Tropical Forest Soil	MSYAEFQRHPRMSLRPEQHSHIAAAYDKAAFDTSLPAYTRAAFAKKAAWFRLLARIGEKKEQVALAKPKDPFGFIAAMH*
Ga0157378_124502002	3300013297	Miscanthus Rhizosphere	MSNVELFERHPRMSLRPEQHSHIAAAYDSAAFDISFPAHTRAAFAKKADWFRLLARVGEKRERVELPKQKAHEIESNPFGFIAAWH*
Ga0163162_119976711	3300013306	Switchgrass Rhizosphere	MSNVESLLMSVRTAAPSHWHPARMSLRPAQHSHIAAAYDSAAFDISLPTHTRAAFARKADWFRLLARVGEKREQAGLAEVHEIGSNPFGFIFARS*
Ga0163163_125548172	3300014325	Switchgrass Rhizosphere	LTPEQHSHIAAAYDKAAFDVSLPAHTRAAFAKKADWFRLLARVGEKREQAGRPKQKAHEIESNPFGFIAAWH*
Ga0132255_1010148301	3300015374	Arabidopsis Rhizosphere	RPEQHSHIAAAYDKAAFDISLPAHTRAAFARKVDWFRLLARVGEKREQAALMAREANPIAESALQNPFGFIAATHHSA*
Ga0182041_100368505	3300016294	Soil	AAAYDKAAFDLSLPTHTRAAFAKKADWFRLRARVGKKIEQAALTKQKEPDPFGFITSRH
Ga0182041_100858695	3300016294	Soil	MSNAEFQRHPRMSLGPEQHSHIAAAYDKAAFDTSLPAYTRVAFDKKAAWFRLLARVGKKKEQAALAKQKA
Ga0182035_106756641	3300016341	Soil	MSNAELFQRHPRMPLSLEQHFHIAAAYDKAAFDINLPAHTRAVFAKKADWFRLLARVGEKKERAAIAKQQTEEPQPNPFGFIAGSH
Ga0182032_103756912	3300016357	Soil	MSNAEFQRHPRMSLGPEQHSHIAAAYDKAAFDTSLPAYTRVAFDKKAAWFRLLARVGKKKEQAALAKQKAQEPQPNPFSFWGR
Ga0182034_100073283	3300016371	Soil	MSHALQRHPRMSLRPEQHFHIAAAYDKAAFDLSLPTHTRAAFAKKADWFRLRARVGKKIEQAALTKQKEPDPFGFITSTH
Ga0182040_103382071	3300016387	Soil	FDSAGATRGPHMSHALQRHPRMSLRPEQHFHIAAAYDKAAFDLSLPTHTRAAFAKKADWFRLRARVGKKIEQAALTKQKEPDPFGFITSTH
Ga0182037_102090052	3300016404	Soil	MSNAELFQRHSRMPLSPEQHFHIAAAYDKAAFDINLPAHTRAVFAKKADWFRLLARVGEKKELAAIAKQHTEEPQPNPFGFIAGSH
Ga0182039_102000452	3300016422	Soil	FDSAGATRGPHMGHALQRHPRMSLRPEQHFHIAAAYDKAAFDLSLPTHTRAAFAKKADWFRLRARVGKKIEQAALTKQKEPDPFGFITSTH
Ga0182038_105919322	3300016445	Soil	MSNAEFQRHPRMSLGPEQHSHIAAAYDKAAFDTSLPAYTRVAFAKKAAWFRLLARVGKKKEQAALAKQKAQEPQPNPFSFWG
Ga0182038_108491983	3300016445	Soil	PLPQRHPARMPLSPEQHSHIAAAYDKAAFDTSLPAYTRAAFAKKAAWFRLLARIGEKKEQAALAKPKDPFGFIAAMH
Ga0190269_120301491	3300018465	Soil	MNHVEPLSQRHPARMLLRPEQHSHIAAAYDKAAFDTSLPAQTRAAFAKKADWFRLLARVGERRAALKASEAKQAQEPYPNPFGFIAAMH
Ga0197907_102864332	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	MSNVELFERHPAARMSLTPEQHSHIAAAYDKAAFDVSLPAHTRAAFAKKADWFRLLARVGEKREQAGRPKQKAHEIESNPFGFIAAWH
Ga0206350_107878651	3300020080	Corn, Switchgrass And Miscanthus Rhizosphere	MSNVELFERHPRMSLRPEQHSHIAAAYDSAAFDISFPAHTRAAFAKKADWFRLLARVGEKREQPGLPKQKAHEIESNPFGFIAAWH
Ga0206354_115535842	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	MSNVELFERHPAARMSLTPEQHSHIAAAYDKAAFDISFPAHTRAAFAKKADWFRLLARVGEKREQAGRPKQKAHEIESNPFGFIAAWH
Ga0126371_101618913	3300021560	Tropical Forest Soil	MNPAKPMTVGAAAVCQRHPARISLRPGQHFHIAAVYDKAAFDISLPGHTRAAFARKADWFRLLARVAEKRELAALMAQKAQEPPNPFGFITAPR
Ga0126371_104436743	3300021560	Tropical Forest Soil	MTYAKPLFMSAGAAALSELHPTRMSLSAEQHSIIAAAYDSAAFDVSLPAHARAAFAKKADWFRLLARVGQKREQAALAKQKAQEPQPNPFGFIEPTH
Ga0126371_109879912	3300021560	Tropical Forest Soil	MSLTPEQHSHIAAAYDKAAFDISLSAHTRAAFARKADWFRLRARVGKKIEAALAKQKAHETESNSFGFIAARH
Ga0224712_102145393	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	VRGPHMSNVELFERHPRMSLRPEQHSHIAAAYDSAAFDISFPAHTRAAFAKKADWFRLLARVGEKREQPGLPKQKAHEIESNPFGFIAAWH
Ga0207699_105684502	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	EQHFHIAAAYDKAAFDISLPAHTRAVFAKKADWFRLLARVGEKKEQVALAKQQAKEPQPNPFGFIAARH
Ga0207677_104332303	3300026023	Miscanthus Rhizosphere	HMSNVELFERHPAARMSLTPEQHSHIAAAYDKAAFDVSLPAHTRAAFAKKADWFRLLARVGEKREQAGRPKQKAHEIESNPFGFIAAWH
Ga0207703_103968842	3300026035	Switchgrass Rhizosphere	MSNVELFERHPAARMSLTPEQHSHIAAAYDKAAFDVSLPAQTRAAFAKKADWFRLLARVGEKREQAGRPKQKAHEIESNPFGFIAAWH
Ga0207648_104037112	3300026089	Miscanthus Rhizosphere	MSNVELFERHPAARMSLTPEQHSHIAAAYDKAAFDVSLPAQTRAAFAKKADWFRLLARVGEKREQAGRPKQKAHEIE
Ga0209177_103972081	3300027775	Agricultural Soil	MSNVELFERHPRMSLRPEQHSHIAAAYDSAAFDISFPAHTRAAFAKKADWFRLLARVGEKREQAGRPKQKAHETESNPFGFIAAWH
Ga0209382_114620092	3300027909	Populus Rhizosphere	MSLTPEQHTHIAEAYDSAAFDIGLPAHTRVTFAKKADWFRLLARVGEKREQATLAKQKAQELEPNPFGFIAAMH
Ga0268265_105610411	3300028380	Switchgrass Rhizosphere	MSSTVLSVRTLLSARMPFTAEQHSLIAAAYDKAAFDVSLPAHTRAAFAKKADWFRLLACIDEKLERGALNASEQTQEPQPNPFGFIGG
Ga0247824_111420661	3300028809	Soil	MNHAKPLLMSVGAAYQRHPARMFLRPEQHSHIAAAYDKAAFDISLPAQTRAAFAKKADWFRLLARIGEKRERAALNAKPKALGAKADPFGF
Ga0308200_11636801	3300030905	Soil	ARGTTMNHVEPLSQRHPARMLLRPEQHSHIAAAYDKAAFDTSLPAQTRAAFAKKADWFRLLARVGERRAALKASEAKQAQEPYPNPFGFIAAMH
Ga0308197_102716301	3300031093	Soil	TTMNHVEPLSQRHPARMLLRPEQHSHIAAAYDKAAFDTSLPAQTRAAFAKKADWFRLLARVGERRAALKASEAKQAQEPYPNPFGFIAAMH
Ga0310915_100474703	3300031573	Soil	MGHALQRHPRMSLRPEQHFHIAAAYDKAAFDLSLPTHTRAAFAKKADWFRLRARVGKKIEQAALTKQKEPDPFGFITSTH
Ga0310915_101464583	3300031573	Soil	MSNAELFQRHPRMPLSPEQHFHIAAAYDKAAFDINLPAHTRAVFAKKADWFRLLARVGEKKELAAIAKQHTEEPQPNPFGFIAGSH
Ga0306918_102371741	3300031744	Soil	MSLRPEQHFHIAAAYDKAAFDLSLPKHTRAAFAKKADWFRLRARVGKKIAQAALTKQKEPDPFGFITSRH
Ga0306918_104527101	3300031744	Soil	MSNAELFQRHPRMPPRPEQHFHIAAAYDKAAFDINLPAHTRAVFAKKADWFRLLARVGEKKELAAIAKQHTEEPQPNPFGFIAGSH
Ga0318550_103396081	3300031797	Soil	LESCPGRSQVFDSAGATRGPHMGHALQRHPRMSLRPEQHFHIAAAYDKAAFDLSLPTHTRAAFAKKADWFRLRARVGKKIEQAALTKQKEPDPFGFITSTH
Ga0310917_110759511	3300031833	Soil	MPLSPEQHFHIAAAYDKAAFDINLPAHTRAVFAKKADWFRLLARVGEKKELAAIAKQHTEEPQPNPFGFIAGSH
Ga0310904_100389705	3300031854	Soil	MSNVELFERHPAARMSLTPEQHSHIAAAYDKAAFDISFPAHTRAAFANKADWFRLLARVGEKREQAGRPKQKANEIESNPFGFIAAWH
Ga0306919_101756611	3300031879	Soil	MSHVYQRHSRVSLRPEQHFHIAAAYDKAAFDISLPARTRAAFAKKADWFRLRARVGKKIEQAALSNPFGFIT
Ga0306923_103552591	3300031910	Soil	QRHPRMSLRPEQHFHIAAAYDKAAFDLSLPTHTRAAFAKKADWFRLRARVGKKIEQAALTKQKEPDPFGFITSTH
Ga0306923_106489751	3300031910	Soil	MSNAELFQRHPRMPPRPEQHFHIAAAYDKAAFDTSLPAHTRAVFAKKADWFRLLARVGEKKERAAIAKQQTEEPQPNPFGFIAGSH
Ga0306921_109209781	3300031912	Soil	MSNAELFQRHPRMPLRPEQHFHIAAAYDKAAFDTSLPAHTRAVFAKKADWFRLLARVGEKKERAAIAKQQTEEPQPNPFGFIAGSH
Ga0306921_110516891	3300031912	Soil	MSNAEFQRHPRMSLGPEQHSHIAAAYDKAAFDTSLPAYTRVAFDKKAAWFRLLARVGKKKEQAALAKQKAKEPQPNPFSF
Ga0310912_114745621	3300031941	Soil	PRMSLRPEQHFHIAAAYDKAAFDLSLPTHTRAAFAKKADWFRLRARVGKKIEQAALTKQKEPDPFGFITSRH
Ga0310916_103045792	3300031942	Soil	SQLFDSAGATRGPHMSHALQRQPRMSLRPEQHFHIAAAYDKAAFDLSLPTHTRAAFAKKADWFRLRARVGKKIEQAALTKQKEPDPFGFITSTH
Ga0310913_105663441	3300031945	Soil	VSPRPEQHFHIAAAYDKAAFDLSLPTHTRAAFAKKADWFRLRARVGKKIEQAALTKQKEPDPFGFITSTH
Ga0310910_107678272	3300031946	Soil	RHPRMPLSPEQHFHIAAAYDKAAFDINLPAHTRAVFAKKADWFRLLARVGEKKELAAIAKQHTEEPQPNPFGFIAGSH
Ga0310902_102971722	3300032012	Soil	MSNVELFERHPAARMSLTPEQHSHIAAAYDKAAFDISFPAHTRAAFAKKADWFRLLARVGEKREQAGRPKQKAHEI
Ga0310911_102508982	3300032035	Soil	MSLRPEQHFHIAAAYDKAAFDLSLPTHTRAAFAKKADWFRLRARVGKKIEQAELSNPFGFIA
Ga0318570_105255632	3300032054	Soil	MSLRPEQHFHIAAAYDKAAFDLSLPTHTRAAFAKKADWFRLRARVGKKIEQAALTKQKEPDPFGFITSTH
Ga0310810_102607363	3300033412	Soil	MNYAEPLSQRHPVRMPLRPEQHSHIAATYDSAAFDISLPAHTRAAFAKKADWFRLLAHVGEKRKRAALNASAAKQIAPEPQPNPFGFISATHA
Ga0310810_110983782	3300033412	Soil	MNYAEPLLRGAAALSERHPARMFLRPEQQFHIAAAYDKAAFDTSLPAQTRTAFAKKADWFRLLARVGEKREQAAQQKAPEPNPFGFIAARL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F054390

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences