Metagenome Family F054430

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F054430
Family Type	Metagenome
Number of Sequences	140
Average Sequence Length	46 residues
Representative Sequence	MNMSVTQFVVPPAIVGRSRSVWHEIIDTVIEGPPRTAADEIAEYL
Number of Associated Samples	90
Number of Associated Scaffolds	140

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	95.71 %
% of genes near scaffold ends (potentially truncated)	95.00 %
% of genes from short scaffolds (< 2000 bps)	94.29 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (63.571 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (41.429 % of family members)
Environment Ontology (ENVO)	Unclassified (59.286 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.143 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 34.25% β-sheet: 0.00% Coil/Unstructured: 65.75%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 140 Family Scaffolds
PF04392	ABC_sub_bind	7.86
PF13561	adh_short_C2	3.57
PF03592	Terminase_2	2.86
PF03401	TctC	2.14
PF00072	Response_reg	2.14
PF13458	Peripla_BP_6	1.43
PF08281	Sigma70_r4_2	1.43
PF00149	Metallophos	0.71
PF05598	DUF772	0.71
PF01464	SLT	0.71
PF12727	PBP_like	0.71
PF02668	TauD	0.71
PF07969	Amidohydro_3	0.71
PF00239	Resolvase	0.71
PF12681	Glyoxalase_2	0.71
PF02518	HATPase_c	0.71
PF09339	HTH_IclR	0.71
PF01977	UbiD	0.71
PF03641	Lysine_decarbox	0.71
PF13185	GAF_2	0.71

COG ID	Name	Functional Category	% Frequency in 140 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	7.86
COG3728	Phage terminase, small subunit	Mobilome: prophages, transposons [X]	2.86
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	2.14
COG0043	3-polyprenyl-4-hydroxybenzoate decarboxylase	Coenzyme transport and metabolism [H]	0.71
COG1611	Nucleotide monophosphate nucleosidase PpnN/YdgH, Lonely Guy (LOG) family	Nucleotide transport and metabolism [F]	0.71
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.71
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.71
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.71

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	63.57 %
Unclassified	root	N/A	36.43 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	63.57 %
Unclassified	root	N/A	36.43 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	63.57 %
Unclassified	root	N/A	36.43 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	52.14 %
Unclassified	root	N/A	36.43 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.71 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	47.14 %
Unclassified	root	N/A	36.43 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.71 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.43 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10.00 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	5.00 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.71 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.43 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.00 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.57 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.71 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.71 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.43 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.00 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.57 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.71 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.71 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.43 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.00 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2.14 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.71 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.71 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.71 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.71 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000580\|AF_2010_repII_A01DRAFT_1044742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	683	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10136403	Not Available	594	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10169325	Not Available	520	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1043044	All Organisms → cellular organisms → Bacteria → Proteobacteria	815	Open in IMG/M
3300000956\|JGI10216J12902_100100283	Not Available	647	Open in IMG/M
3300001431\|F14TB_101183945	Not Available	661	Open in IMG/M
3300004267\|Ga0066396_10043184	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	701	Open in IMG/M
3300005332\|Ga0066388_100364246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2092	Open in IMG/M
3300005332\|Ga0066388_104305139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	725	Open in IMG/M
3300005332\|Ga0066388_107807242	Not Available	536	Open in IMG/M
3300005471\|Ga0070698_101042829	All Organisms → cellular organisms → Bacteria	765	Open in IMG/M
3300005471\|Ga0070698_101353177	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	662	Open in IMG/M
3300005558\|Ga0066698_11066613	Not Available	512	Open in IMG/M
3300005576\|Ga0066708_10300419	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1028	Open in IMG/M
3300005713\|Ga0066905_100461801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	1046	Open in IMG/M
3300005713\|Ga0066905_100830840	Not Available	803	Open in IMG/M
3300005713\|Ga0066905_101251607	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	665	Open in IMG/M
3300005713\|Ga0066905_101358277	Not Available	642	Open in IMG/M
3300005713\|Ga0066905_101417260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	629	Open in IMG/M
3300005713\|Ga0066905_101795363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	565	Open in IMG/M
3300005764\|Ga0066903_102064442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1096	Open in IMG/M
3300005764\|Ga0066903_102124557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1081	Open in IMG/M
3300005764\|Ga0066903_102577809	Not Available	985	Open in IMG/M
3300005764\|Ga0066903_105833731	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	646	Open in IMG/M
3300005764\|Ga0066903_107052759	Not Available	582	Open in IMG/M
3300005764\|Ga0066903_108075732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	539	Open in IMG/M
3300006797\|Ga0066659_10428512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1046	Open in IMG/M
3300006854\|Ga0075425_103167165	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	500	Open in IMG/M
3300009792\|Ga0126374_11641944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	532	Open in IMG/M
3300010043\|Ga0126380_10952765	Not Available	718	Open in IMG/M
3300010046\|Ga0126384_10013091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5217	Open in IMG/M
3300010046\|Ga0126384_10275047	Not Available	1373	Open in IMG/M
3300010048\|Ga0126373_11050139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	880	Open in IMG/M
3300010359\|Ga0126376_11678331	Not Available	670	Open in IMG/M
3300010360\|Ga0126372_10595354	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1060	Open in IMG/M
3300010361\|Ga0126378_10695231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1129	Open in IMG/M
3300010366\|Ga0126379_12264069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	644	Open in IMG/M
3300010366\|Ga0126379_13110219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	555	Open in IMG/M
3300010376\|Ga0126381_103338694	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	633	Open in IMG/M
3300010398\|Ga0126383_11616038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	737	Open in IMG/M
3300011269\|Ga0137392_10699039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	839	Open in IMG/M
3300012205\|Ga0137362_10629521	All Organisms → cellular organisms → Bacteria	924	Open in IMG/M
3300012205\|Ga0137362_11479865	Not Available	566	Open in IMG/M
3300012353\|Ga0137367_10625354	Not Available	753	Open in IMG/M
3300012357\|Ga0137384_10669009	All Organisms → cellular organisms → Bacteria → Proteobacteria	844	Open in IMG/M
3300012362\|Ga0137361_10984656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	762	Open in IMG/M
3300012532\|Ga0137373_10953300	Not Available	625	Open in IMG/M
3300012899\|Ga0157299_10093074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	766	Open in IMG/M
3300012948\|Ga0126375_10132014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1543	Open in IMG/M
3300012971\|Ga0126369_13432902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	519	Open in IMG/M
3300014157\|Ga0134078_10315305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	677	Open in IMG/M
3300016270\|Ga0182036_10510768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	953	Open in IMG/M
3300016270\|Ga0182036_10707786	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	815	Open in IMG/M
3300016270\|Ga0182036_11543609	Not Available	558	Open in IMG/M
3300016270\|Ga0182036_11664171	Not Available	538	Open in IMG/M
3300016319\|Ga0182033_11087171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	714	Open in IMG/M
3300016319\|Ga0182033_11263228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	663	Open in IMG/M
3300016341\|Ga0182035_10441470	Not Available	1101	Open in IMG/M
3300016341\|Ga0182035_11040921	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300016341\|Ga0182035_11297749	Not Available	652	Open in IMG/M
3300016341\|Ga0182035_11353840	Not Available	638	Open in IMG/M
3300016404\|Ga0182037_11463059	Not Available	605	Open in IMG/M
3300016404\|Ga0182037_11715742	Not Available	560	Open in IMG/M
3300016422\|Ga0182039_11206180	Not Available	684	Open in IMG/M
3300016422\|Ga0182039_11858110	Not Available	553	Open in IMG/M
3300018465\|Ga0190269_11970762	Not Available	507	Open in IMG/M
3300018468\|Ga0066662_11351229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	734	Open in IMG/M
3300021088\|Ga0210404_10324724	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	851	Open in IMG/M
3300021406\|Ga0210386_10495624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1056	Open in IMG/M
3300021560\|Ga0126371_10876321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1042	Open in IMG/M
3300027874\|Ga0209465_10365370	Not Available	723	Open in IMG/M
3300031543\|Ga0318516_10119176	All Organisms → cellular organisms → Bacteria → Proteobacteria	1503	Open in IMG/M
3300031544\|Ga0318534_10039062	All Organisms → cellular organisms → Bacteria → Proteobacteria	2627	Open in IMG/M
3300031546\|Ga0318538_10079875	All Organisms → cellular organisms → Bacteria	1659	Open in IMG/M
3300031549\|Ga0318571_10137452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	834	Open in IMG/M
3300031564\|Ga0318573_10577408	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300031572\|Ga0318515_10731913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	523	Open in IMG/M
3300031573\|Ga0310915_10627886	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300031679\|Ga0318561_10092072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1583	Open in IMG/M
3300031679\|Ga0318561_10285286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	902	Open in IMG/M
3300031679\|Ga0318561_10472323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	690	Open in IMG/M
3300031682\|Ga0318560_10257191	All Organisms → cellular organisms → Bacteria	938	Open in IMG/M
3300031719\|Ga0306917_10483512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	971	Open in IMG/M
3300031723\|Ga0318493_10356672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	796	Open in IMG/M
3300031736\|Ga0318501_10099547	All Organisms → cellular organisms → Bacteria → Proteobacteria	1448	Open in IMG/M
3300031736\|Ga0318501_10543575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	635	Open in IMG/M
3300031747\|Ga0318502_10469503	Not Available	752	Open in IMG/M
3300031765\|Ga0318554_10713528	Not Available	562	Open in IMG/M
3300031768\|Ga0318509_10385917	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	783	Open in IMG/M
3300031770\|Ga0318521_10629691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	649	Open in IMG/M
3300031770\|Ga0318521_11036359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	503	Open in IMG/M
3300031771\|Ga0318546_10535516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	823	Open in IMG/M
3300031771\|Ga0318546_10739250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	692	Open in IMG/M
3300031771\|Ga0318546_10774754	Not Available	675	Open in IMG/M
3300031777\|Ga0318543_10264333	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300031777\|Ga0318543_10399368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	616	Open in IMG/M
3300031782\|Ga0318552_10169208	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1102	Open in IMG/M
3300031792\|Ga0318529_10207369	Not Available	909	Open in IMG/M
3300031792\|Ga0318529_10224364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	873	Open in IMG/M
3300031792\|Ga0318529_10574248	Not Available	523	Open in IMG/M
3300031795\|Ga0318557_10122191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1165	Open in IMG/M
3300031796\|Ga0318576_10159375	All Organisms → cellular organisms → Bacteria	1054	Open in IMG/M
3300031796\|Ga0318576_10548932	Not Available	545	Open in IMG/M
3300031819\|Ga0318568_10998586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	517	Open in IMG/M
3300031833\|Ga0310917_10488796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	837	Open in IMG/M
3300031879\|Ga0306919_11112203	Not Available	602	Open in IMG/M
3300031890\|Ga0306925_10079224	All Organisms → cellular organisms → Bacteria → Proteobacteria	3470	Open in IMG/M
3300031890\|Ga0306925_11378630	Not Available	696	Open in IMG/M
3300031893\|Ga0318536_10508201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	605	Open in IMG/M
3300031893\|Ga0318536_10647997	Not Available	527	Open in IMG/M
3300031897\|Ga0318520_10368029	Not Available	875	Open in IMG/M
3300031897\|Ga0318520_10665387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	649	Open in IMG/M
3300031910\|Ga0306923_10068647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3949	Open in IMG/M
3300031910\|Ga0306923_10408890	Not Available	1543	Open in IMG/M
3300031910\|Ga0306923_11635006	Not Available	668	Open in IMG/M
3300031941\|Ga0310912_10018273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4590	Open in IMG/M
3300031945\|Ga0310913_10919266	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300031945\|Ga0310913_10950174	Not Available	603	Open in IMG/M
3300031954\|Ga0306926_10054163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4811	Open in IMG/M
3300031954\|Ga0306926_10378248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1750	Open in IMG/M
3300031954\|Ga0306926_11192550	Not Available	895	Open in IMG/M
3300031954\|Ga0306926_11321822	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	840	Open in IMG/M
3300032025\|Ga0318507_10347186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	646	Open in IMG/M
3300032035\|Ga0310911_10500735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	704	Open in IMG/M
3300032039\|Ga0318559_10627355	Not Available	501	Open in IMG/M
3300032042\|Ga0318545_10115153	All Organisms → cellular organisms → Bacteria	946	Open in IMG/M
3300032044\|Ga0318558_10412991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	672	Open in IMG/M
3300032054\|Ga0318570_10025809	All Organisms → cellular organisms → Bacteria	2284	Open in IMG/M
3300032054\|Ga0318570_10353358	Not Available	669	Open in IMG/M
3300032055\|Ga0318575_10334856	Not Available	766	Open in IMG/M
3300032055\|Ga0318575_10380079	Not Available	716	Open in IMG/M
3300032059\|Ga0318533_10419838	All Organisms → cellular organisms → Bacteria	977	Open in IMG/M
3300032060\|Ga0318505_10287486	Not Available	775	Open in IMG/M
3300032066\|Ga0318514_10133891	All Organisms → cellular organisms → Bacteria	1278	Open in IMG/M
3300032076\|Ga0306924_11662827	Not Available	670	Open in IMG/M
3300032076\|Ga0306924_11711925	Not Available	658	Open in IMG/M
3300032091\|Ga0318577_10207942	Not Available	936	Open in IMG/M
3300032091\|Ga0318577_10303880	Not Available	763	Open in IMG/M
3300032094\|Ga0318540_10073992	All Organisms → cellular organisms → Bacteria	1569	Open in IMG/M
3300032094\|Ga0318540_10192022	Not Available	983	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.29%
Host-Associated	Host-Associated	0.71%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.29%
Plants	Host-Associated → Plants	0.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	99.29%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.71%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	85.00%
Loam	Environmental → Terrestrial → Soil → Loam	14.29%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.71%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	63.57%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.14%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.57%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.43%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	41.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.29%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	12.14%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.71%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.43%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.43%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.71%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.71%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.71%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.71%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A01DRAFT_10447421	3300000580	Forest Soil	MNMSVTQFVQAPAIVARSRSVWHEIIDTVIEGPPRTTADEIANYLARH
AF_2010_repII_A1DRAFT_101364032	3300000597	Forest Soil	MNMSVTEFGVPPAIVGRDRSVWREIIDTVIEGPPRTTANEIAE
AF_2010_repII_A1DRAFT_101693251	3300000597	Forest Soil	MNMSVTQFVVPPAIVGRSRSIWHEIIDTVIEAPPRTAADEI
AF_2010_repII_A100DRAFT_10430442	3300000655	Forest Soil	MNMSVTQFVQAPAIVARSRSVWHEIIDTVLDGPPRTAADEIAEYLARH
JGI10216J12902_1001002832	3300000956	Soil	MNMSVTQFVPAPAIAARSRSVWHEIIDAVIGGPQRTAADEIADYLARHPYD
F14TB_1011839451	3300001431	Soil	MNMSVTQFAVAPAMIGRKRSVWREIIDMVIEGPPRTAADETAEYLARHQYD
Ga0066396_100431843	3300004267	Tropical Forest Soil	MNMSVTQFVQASAIVPRSRSVWHEIIDTVMEGPPRTAADEITEYLARHQYDL
Ga0066388_1003642463	3300005332	Tropical Forest Soil	MNMSVTQFVEARAMAGRNPSLWRRVIDTVIERPPRTAADEIAEYLARH*
Ga0066388_1043051392	3300005332	Tropical Forest Soil	MNMSVTEFVVPPAIVGRNRSVWREIIDTVMEGPPRTAADEITEYLARHQYDL
Ga0066388_1078072421	3300005332	Tropical Forest Soil	MNMSVTEFGVPPAIAGRDRSVWREIIDTVIEGPSRTTANEIAEYLERHQYD
Ga0070698_1010428292	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MNMSVTEFVVPPAIVGRSRSVWREIIDTVMEGPPRTAADEITEYLARH
Ga0070698_1013531773	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MNMSVMEFGVPPAIVGRSRSVWREIIDTVMEGPPRTAADEITEYLARH
Ga0066698_110666132	3300005558	Soil	MNMSVTQFVQAPAIVTGSRSLWHEIIDTVIQGPRRTAADE
Ga0066708_103004192	3300005576	Soil	MNMSVTQFVQAPAIVTGSRSLWHEIIDTVIEEPRRTAADEIAEY
Ga0066905_1004618013	3300005713	Tropical Forest Soil	MNMSVTQFVVPPAIVGRSRSVWHEIIDTVIEGPPR
Ga0066905_1008308401	3300005713	Tropical Forest Soil	MNMSVTQFVQAPAIVARSRSVWHEIIDTVMEGPRRTAADE
Ga0066905_1012516071	3300005713	Tropical Forest Soil	MNMSVTRFVQAPAIVARSRSVWHEIIDTVIEGPPRTAADEIANYLA
Ga0066905_1013582771	3300005713	Tropical Forest Soil	MSVTQLVQAPAIVARSRSVWHEIIDTVIEGPRRTAADEIAEYLARHQYDLSP
Ga0066905_1014172602	3300005713	Tropical Forest Soil	MNMSVTQFVQAPAIVARSRSVWHEIIDTVIEGPPR
Ga0066905_1017953632	3300005713	Tropical Forest Soil	MNVSVTQFTVAPAMVGRSRSLWHEIIDTVIEGSPRTAANEIAEYLERHQYDL
Ga0066903_1020644424	3300005764	Tropical Forest Soil	MNMSVTQFVVPPAIVGRSRSIWHEIIDTVIEAPPRTAADEIAEYLA
Ga0066903_1021245573	3300005764	Tropical Forest Soil	MNMSVMEFVVPPAIVGRNRSVWREIIDTVMEGPPRTAADEITEYL
Ga0066903_1025778091	3300005764	Tropical Forest Soil	MNMSVTQFVQAPAIVARSRSVWHEIIDTVIEGSTRTAADEI
Ga0066903_1058337311	3300005764	Tropical Forest Soil	MNMSVTQFVQASVFVARSRSVWHEIIDTVIEGPPRTAADEIAEY
Ga0066903_1070527591	3300005764	Tropical Forest Soil	MSVTQFVQAPAIVARSRSVWHEIIDTVIEGSTRTAADEI
Ga0066903_1080757321	3300005764	Tropical Forest Soil	MNMSVTKFVVPPAIVGRNRSVWREIIDTVMEGPPRTAADEITEYLA
Ga0066659_104285123	3300006797	Soil	MNMSVMEFGVPSAIVGRSRSVWREIIDTVMEGPPRTAAD
Ga0075425_1031671651	3300006854	Populus Rhizosphere	MNMSVTEFVVPPAIVGRSRSVWREIIDTVMEGPPRTAADEITEY
Ga0126374_116419441	3300009792	Tropical Forest Soil	MNMSVTEFVVPLAIVGRNRSVWREIIDTVMEGPPRTAADEITEY
Ga0126380_109527651	3300010043	Tropical Forest Soil	MEFVVPPAIVGRSRSVWHEIIDTVIEGPLRTAVDEIAEYLA
Ga0126384_100130911	3300010046	Tropical Forest Soil	MNMSVTQFVQAPAIVARSRSVWHEIIDTVMEGPPRTAADEITEYLARHQYDL
Ga0126384_102750471	3300010046	Tropical Forest Soil	MNMSVTQFVQAPVIVARSRSLWHEIIDTVIEGPPRTAADEIAE
Ga0126373_110501392	3300010048	Tropical Forest Soil	MNMSVTQFVQAPAIVARSRSVWHEIIDTVIEGPPRTAADEIAEYLARHQY
Ga0126376_116783311	3300010359	Tropical Forest Soil	MNVSVTQFVQAPGIVARSRSVWREIIDTVIEGPRTAA
Ga0126372_105953541	3300010360	Tropical Forest Soil	MNMSVTQFVQAPAIVARSRSVWHEIIDTVIEGPPRTAADEIAE
Ga0126378_106952311	3300010361	Tropical Forest Soil	MNMSVTQFVVPPAIVARGRSIWHEIIDTVIEGPQRTAADEVADYLARHQYD*
Ga0126379_122640691	3300010366	Tropical Forest Soil	MSVTQFTVAPTMIGRSRPFWHEIIDTVIEGPPRTAANEIAEYLERHQYDLSPA
Ga0126379_131102191	3300010366	Tropical Forest Soil	MNMSVTHFVVQPAFVGCNRSVWRQIIDTVIEGPPRTTADEIAEYLARHQYDLS
Ga0126381_1033386941	3300010376	Tropical Forest Soil	MNMSVTQFVVPPAIVGRSRSVWHEIIDTVIEGPPRTAADEIAEYL
Ga0126383_116160382	3300010398	Tropical Forest Soil	MNMSVTQFVVPPAIVGRSRSVWHEIIDTVIEGPPRTAADEIAEYLARHQYDL
Ga0137392_106990392	3300011269	Vadose Zone Soil	MNMPVTKFVEARAMVGRNRPLWRQIIDTVIEGPPRTAADEIDEYLTRHQHDLS
Ga0137362_106295212	3300012205	Vadose Zone Soil	MNMSVTQFVVAPAMVGRSRSVWREIIDTVIEGPPRTAAD
Ga0137362_114798651	3300012205	Vadose Zone Soil	MNMSVTQFVQAPAIVARSRSVWHEIIDTVIEGSPQTAADEIAKYLARH
Ga0137367_106253541	3300012353	Vadose Zone Soil	MNMSVTQFVVPAAIVGRSRSVWHEIIDTVLEGPPRT
Ga0137384_106690093	3300012357	Vadose Zone Soil	MNMSVMEFGVPPAIVGRSRSVWREIIDTVMEGPPRTAADEIT
Ga0137361_109846561	3300012362	Vadose Zone Soil	MNMSVTQFVVPPAIVGRSRSIWHEIIDTVIEGPPRTAADEITEYLARHQY
Ga0137373_109533002	3300012532	Vadose Zone Soil	MNMSVTQLVQNRSVWHEIMDTVIEGPRRTAADEIAE
Ga0157299_100930743	3300012899	Soil	MNMSVMEFGVPSAIVGRSRSVWREIIDTVMEGPPRTAADEITEY
Ga0126375_101320144	3300012948	Tropical Forest Soil	MNMSVTQFVVPPAIVVGRSRSIWHEIIDTVIEGPPRTAAD
Ga0126369_134329022	3300012971	Tropical Forest Soil	SVTEFVVPPAIVGRNRSVWREIIDTVMEGPPRTAADEITE*
Ga0134078_103153052	3300014157	Grasslands Soil	MNMSVTQFVQAPAIVTGSRSLWHEIIDTVIEEPRRT
Ga0182036_105107681	3300016270	Soil	MNMSVTHFAQSPAIAARSRSVWREIIETVIEGPRTAEDEITEYLARHQYDL
Ga0182036_107077861	3300016270	Soil	MNMSVTQFVVPPAIVGRSRSIWREIIDTVIEGPPRTAADEITEYLARHQY
Ga0182036_115436091	3300016270	Soil	MNMSVTQFVVPPAIVGRSRSIWHEIIDTVIEEPPRT
Ga0182036_116641711	3300016270	Soil	MNTSVTQFVVPPAIVGRSRSVWHEIIDTVIEGPPRTAADEIAEYLAR
Ga0182033_110871712	3300016319	Soil	MNMSVSQFVPAPAMVGRSRSVWREIMDTVIEGTPRTAADEIAEYLERHQY
Ga0182033_112632282	3300016319	Soil	MNMTVTEFVVPPAIVGRNRSVWREIIDTVMEGPPRTAADEI
Ga0182035_104414701	3300016341	Soil	MNMSVTQFVVPPAIVGRSRSVWHEIIDTVIEGPPRTAADE
Ga0182035_110409212	3300016341	Soil	MNMTVTEFVVPPAIVGRNRSVWREIIDTVMEGPPR
Ga0182035_112977491	3300016341	Soil	MNMSVTEFVVPPAIVGRNRSVWREIIDTVIEGPPRTAADEVSEY
Ga0182035_113538401	3300016341	Soil	MKMSVTQFVVPLAIVGRSRSVWHEIIDTVIEGPPRTAADEIAEYLAR
Ga0182037_114630591	3300016404	Soil	FVQAPAIVGRSRSVRHEIIDTVIEGPPRTAADEIAEYLARH
Ga0182037_117157421	3300016404	Soil	MNMSVTQFVVPPAIVGRSRSIWHEIIDTVIEGPPRT
Ga0182039_112061801	3300016422	Soil	MNTSVTQFVVPPAIVGRSRSVWHEIIDTVIEGPPRTAADEIAEYLARHQYDL
Ga0182039_118581101	3300016422	Soil	MKMSVTQFVVPLAIVGRSRSVWHEIIDTVIEGPPRTAADEIAEYLA
Ga0190269_119707621	3300018465	Soil	MNMSVTQFVMPPAMVGRNRSVWREIIDTVIEGPPRTTADDIAAYLARHPHDLS
Ga0066662_113512291	3300018468	Grasslands Soil	MNMSVMEFGVPSAIVGRSRSVWREIIDTVMEGPPRTAADEITEYLARHQYDL
Ga0210404_103247241	3300021088	Soil	MNMSVTEFVVPPAIVGRSRSVWREIIDTVMEGPPRTAADEITEYLARHQYDLSP
Ga0210386_104956243	3300021406	Soil	MNMSVTQGVQAPAIVTGSRSLWHEIIDTVIQGPRRTAADEITEYLARHQY
Ga0126371_108763214	3300021560	Tropical Forest Soil	MNMSVTQFVVPPAIVGRSRSIWHEIIDTVIEKPPRTAA
Ga0209465_103653701	3300027874	Tropical Forest Soil	MNMSVMEFVVPPAIVGRSRSIWHEIIDTVIEGSPRTAADEITEY
Ga0318516_101191761	3300031543	Soil	MNMSVTQFVQAPAIVARSRSVWHEIIDTVIEGPPRTTADEI
Ga0318534_100390625	3300031544	Soil	MNMSVTQFVVTPAIVGRSRSIWHEIIDTVIGGPPRTAADEIAEYLARHQYDLAERA
Ga0318538_100798754	3300031546	Soil	MNMSVTEFVVPPAIVGRNRSVWREIIDTVMEGPPRTAADEITEYLARHQYD
Ga0318571_101374521	3300031549	Soil	MNMSVTQFVVPPAIVGRSRSIWREIIDTVIEGPPRTAADEITEYLARHQ
Ga0318573_105774081	3300031564	Soil	MNMSVTQFVVPPAIVGRSRSVWHEIIDTVIEGTPRTAADEIAEYLARHQY
Ga0318515_107319131	3300031572	Soil	MNMSVTEFVVPPAIGGRNRLVWREIIDTVMEGPPRTASDEIAEYLARHQYD
Ga0310915_106278862	3300031573	Soil	NKVAQFVVPPAIVGRSRSVWQEIIDTVIQGPPRTAADEIAEYLAQHQYDGNLVR
Ga0318561_100920724	3300031679	Soil	MNVSVMQFTGAPAMVGRSRSFWHEIIDTVIEGSPRTAANEIAEYLERHQY
Ga0318561_102852862	3300031679	Soil	MNMSVMEFVVPPAIVGRSRSLWHEIIDTVIEGPPRTAADEITEYLARH
Ga0318561_104723232	3300031679	Soil	MNMSVTQFVQAPAIVGRSRSVRHEIIDTVIEGPPRTAADEIAEYLARH
Ga0318560_102571912	3300031682	Soil	MNMTVTEFVVPPAIVGRNRSVWREIIDTVMEGPPRTA
Ga0306917_104835121	3300031719	Soil	MNMSVTEFVVPPAIVGRNRSVWREIIDTVMEGSPRTAADEITEYLARHQYDLS
Ga0318493_103566721	3300031723	Soil	MNMSVTQFVQAPGIVARSRSVWREIIDTVIEGPRTAADEIAEYLARHQ
Ga0318501_100995473	3300031736	Soil	MNMSITEFVVPPAIVGRNRSVWREIIDTVMEGPARTAADEITEYL
Ga0318501_105435751	3300031736	Soil	MNMSVTEFVVPPAIVGRSRSVWHEIIDTVMGGPPRTAADEIAEYLARHQYD
Ga0318502_104695031	3300031747	Soil	MNMSVMEFVVPPAIVGRSRSIWHEIIDTVIEGSPRTAADEITEYL
Ga0318554_107135281	3300031765	Soil	MNVSVTQFTVAPAMVGRSRSHEIIDTVIEGSPRTAANEIAEY
Ga0318509_103859172	3300031768	Soil	DEIAEYLARHMNMSVTQFVQAPAIVGRSRSVRHEIIDTVIEGPPRTAADEIAEYLARH
Ga0318521_106296911	3300031770	Soil	MNMSVTQFVQAPAIVGRSRSVRHEIIDTVIEGPPRTAADEIAEYLARHM
Ga0318521_110363591	3300031770	Soil	MNMSVMEFVVPPAIVGRSRSLWHEIIDTVIEGPPRTAADEITEYLARHQ
Ga0318546_105355161	3300031771	Soil	MKMSVTQFVVPLAIVGRSRSVWHEIIDTVIEGPPRTAADEIAEYLARHQYDLS
Ga0318546_107392501	3300031771	Soil	MNMSVTQFVVPPAIVGRNRSVWREIIETVMEGPPRTAADEITNYLARYQY
Ga0318546_107747542	3300031771	Soil	MNMSVTEFVVPPAIVGRNRSVWREIIDTVMEGPPR
Ga0318543_102643331	3300031777	Soil	MNVSVMQFTGAPAMVGRSRSFWHEIIDTVIEGSPRTAANEIAEYLERHQYDL
Ga0318543_103993681	3300031777	Soil	MNVSVTQFTVAPAMVRRSRSLWHEIIDTVIEGSPRTAANEIAEYLEQH
Ga0318552_101692082	3300031782	Soil	MNMSVTHFAQSPAIAARSRSVWREIIETVIEGPRTAEDEITKYLARHQYDLTDVAD
Ga0318529_102073691	3300031792	Soil	MNMSVTEFVVPPAIVGRNRSVWREIIDTVMEGPPRTAADEITEYLARHQYDLSP
Ga0318529_102243643	3300031792	Soil	MNMSVTQFVQAPAIVARSRSVWHEIIDTVIEGPPRTTADEIANYLA
Ga0318529_105742481	3300031792	Soil	MNMSVMEFVVPPAIVGRSRSLWHEIIDTVIEGPPRTAADEITEYLA
Ga0318557_101221911	3300031795	Soil	MNMSVTQFVVPPAVVGCNRSVWRQIIDTVIEGPPRTAADEIDEYLARHQHD
Ga0318576_101593753	3300031796	Soil	MNVSVMQFTGAPAMVGRSRSFWHEIIDTVIEGSPRTAANEIAKYLERHQ
Ga0318576_105489321	3300031796	Soil	MNMSVTEFVVPPAIVGRDRSVWREIIDTVMEGRRERL
Ga0318568_109985862	3300031819	Soil	MNMSVMEFVVPPAIVGRNRSVWWEIIDTVMEGPPRTAVD
Ga0310917_104887961	3300031833	Soil	MNMSVTEFVVPPAIGGRNRLVWREIIDTVMEGPPRTASDEI
Ga0306919_111122032	3300031879	Soil	MNMSVTQFVVPSAIVGRSRSLWHEIIDTVIEGPPRTAADEIAEYLARHQYDLS
Ga0306925_100792244	3300031890	Soil	MGMSVTQFVLPPAIVRRSRSVWHEIIDTVIRGPPRTAADEIAEYLARHQYDGNLVRWAA
Ga0306925_113786301	3300031890	Soil	MNTSVTQFVVPPAIVGRSRSVWHEIIDTVIEGPPRTAADEIAEY
Ga0318536_105082012	3300031893	Soil	MNMSVTQFVVPPAVVGCNRSVWCQIIDTLIEGPPRTAADKIDEYLARHQYD
Ga0318536_106479971	3300031893	Soil	MKMSVTQFVVPLAIVGRSRSVWHEIIDTVIEGPPR
Ga0318520_103680291	3300031897	Soil	MNMSVTEFVVPPAIVGRSRSVWREIIDTVFEGPPRTAVDEVAEYL
Ga0318520_106653872	3300031897	Soil	MNMSVTQFVVPPAVVGRSRSVWHEIIDTVIEGPPRTAADEIAEYLARHQY
Ga0306923_100686475	3300031910	Soil	MGMSVTQFVLPPAIVRRSRSVWHEIIDTVIRGPPRTAADEIAEYLARHQYDGNLVRCAA
Ga0306923_104088901	3300031910	Soil	MNMSVTEFVVPPAIGGRNRLVWREIIDTVMEEPPRTAADEIAE
Ga0306923_116350061	3300031910	Soil	MNISVTEFVVPRAIVGRSRSVWHEIIDTVIEGPPRTAADEIAEYLARHQYDL
Ga0310912_100182731	3300031941	Soil	MSVTQFVQAPPIVARSRSVWQEIIDTVIEGPPRTAADEIAEYL
Ga0310913_109192661	3300031945	Soil	MNMSVTEFVVPPAIVGRNRSVWREIIDTVMEGPPRTAADEITEYLARH
Ga0310913_109501741	3300031945	Soil	MNMSVTELVVPPAIVGRNRSVWREIIDTVMEGPPR
Ga0306926_100541637	3300031954	Soil	MNMSVTQFVQAPAIVGRSRSVRHEIIDTVIEGPPRTAADEI
Ga0306926_103782483	3300031954	Soil	MGMSVTQFVLPPAIVRRSRSVWHEIIDTVIRGPPRTAADEIAEYLARHQY
Ga0306926_111925501	3300031954	Soil	MNISVTEFVVPRAIVGRSRSVWHEIIDTVIEGPPRTAADEIAEYLARHQY
Ga0306926_113218221	3300031954	Soil	MNMSVTQFVQAPAIVARSRSVWHEIIDTVIEGPPRT
Ga0318507_103471862	3300032025	Soil	MNMSVTQFVVPPAVVGCNRSVWRQIIDTVIEGPPRTAADEIDEYLARH
Ga0310911_105007351	3300032035	Soil	MNMSVTEFVVPPAIVGRNRSVWREIIDTVMEGPPRTAADEITEYLARHQY
Ga0318559_106273551	3300032039	Soil	MNMSVTHFAQSPAIAARSRSVWREIIETVIEGPRTAEDEITEYLARHQYDLSP
Ga0318545_101151531	3300032042	Soil	MNMTVTEFVVPPAIVGRNRSVWREIIDTVMEGPPRTAADEITE
Ga0318558_104129911	3300032044	Soil	MNMSVTQFVVPPAIVGRSGSLWHEIIDTVIEGPPRTAADEIAEYLARH
Ga0318570_100258094	3300032054	Soil	MNVSVTQFTVAPAMVGRSRSLWHEIIDTVIEGSPRTAANEIAEYLERHQYDLS
Ga0318570_103533581	3300032054	Soil	MNMSITEFVVPPAIVGRNRSVWREIIDTVMEGPARTAADE
Ga0318575_103348561	3300032055	Soil	MNMSVTEFVVPPAIVGRNRSVWREIIDTVMEGPPRTAADEITEYLARHQ
Ga0318575_103800792	3300032055	Soil	MNMSVTQFVVPPAVVGCNRSVWCQIIDTLIEGPQRTAADEIDEYLARHQYD
Ga0318533_104198382	3300032059	Soil	MNMTVTEFVVPPAIVGRNRSVWREIIDTVMEGPPRTAADEITEYL
Ga0318505_102874862	3300032060	Soil	MNMSVTEFVVPPAIVGRNRSVWREIIDTVMEGPPRTAADEITEYLARHQYDLS
Ga0318514_101338911	3300032066	Soil	HMNMSVTQFVQAPAIVGRSRSVRHEIIDTVIEGPPRTAADEIAEYLARH
Ga0306924_116628271	3300032076	Soil	MNMSVTQFVQAPAIVGRSRSVRHEIIDTVIEGPPRTAADEIA
Ga0306924_117119251	3300032076	Soil	MNTSVTQFVVPPAIVGRSRSVWHEIIDTVIEGPPRTAADEIAEYLARHQYD
Ga0318577_102079422	3300032091	Soil	MNMSVTQFVVPPAIVGRSRSIWHEIIDTVIEGPQRTAADEITEYLARHQYD
Ga0318577_103038801	3300032091	Soil	MNMSVTEFVVPPAIVGRSRSVWHEIIDTVMGGPPRTAADEIAEYL
Ga0318540_100739923	3300032094	Soil	MNMSVTEFVVPPAIVGRNRSVWREIIDTVMEGPPRTAADEITEYLA
Ga0318540_101920221	3300032094	Soil	MNMSVTQFVVPPAIVVGRSRSIWHEIIDTVIEGPPRTAADEIAEYLARHQYDLS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F054430

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences