Metagenome / Metatranscriptome Family F054646

Basic Information
Family ID	F054646
Family Type	Metagenome / Metatranscriptome
Number of Sequences	139
Average Sequence Length	54 residues
Representative Sequence	VSCDDATSGKMPGPYTLVRPETRLSAQDVETICAAARQAEANTADGRRER
Number of Associated Samples	117
Number of Associated Scaffolds	139

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	113
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.64

Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (7.914 % of family members)
Environment Ontology (ENVO)	Unclassified (33.813 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (43.885 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.44% β-sheet: 0.00% Coil/Unstructured: 52.56%
Feature Viewer

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Pfam ID	Name	% Frequency in 139 Family Scaffolds
PF13380	CoA_binding_2	64.03
PF12680	SnoaL_2	1.44
PF12146	Hydrolase_4	1.44
PF00730	HhH-GPD	0.72
PF12697	Abhydrolase_6	0.72
PF00196	GerE	0.72
PF13637	Ank_4	0.72
PF07355	GRDB	0.72
PF03551	PadR	0.72
PF00082	Peptidase_S8	0.72
PF02668	TauD	0.72
PF13517	FG-GAP_3	0.72

COG ID	Name	Functional Category	% Frequency in 139 Family Scaffolds
COG0122	3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase	Replication, recombination and repair [L]	0.72
COG0177	Endonuclease III	Replication, recombination and repair [L]	0.72
COG1059	Thermostable 8-oxoguanine DNA glycosylase	Replication, recombination and repair [L]	0.72
COG1194	Adenine-specific DNA glycosylase, acts on AG and A-oxoG pairs	Replication, recombination and repair [L]	0.72
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.72
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.72
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.72
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.72
COG2231	3-Methyladenine DNA glycosylase, HhH-GPD/Endo3 superfamily	Replication, recombination and repair [L]	0.72

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	60.43%
Host-Associated	Host-Associated	38.85%
Engineered	Engineered	0.72%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	53.96%
Plants	Host-Associated → Plants	38.85%
Aquatic	Environmental → Aquatic	6.47%
Bioremediation	Engineered → Bioremediation	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	53.24%
Rhizosphere	Host-Associated → Plants → Rhizosphere	23.02%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.83%
Freshwater	Environmental → Aquatic → Freshwater	2.88%
Sediment	Environmental → Aquatic → Sediment	2.88%
Marine	Environmental → Aquatic → Marine	0.72%
Floodplain	Environmental → Terrestrial → Floodplain	0.72%
Metal	Engineered → Bioremediation → Metal	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	41.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.99%
Loam	Environmental → Terrestrial → Soil → Loam	9.35%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	7.19%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.19%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.04%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.88%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.16%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.44%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.44%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.72%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.72%
Sand	Environmental → Terrestrial → Soil → Sand	0.72%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.72%
Unclassified	Engineered → Bioremediation → Metal → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.99%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	7.19%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.19%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.04%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.32%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.32%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.32%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.88%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.16%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.16%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.44%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.44%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.72%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.72%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.72%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.72%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.72%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.72%
Unclassified	Engineered → Bioremediation → Metal → Unclassified → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.91%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.47%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.76%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.32%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.32%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	4.32%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.60%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.88%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.16%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.16%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.16%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.16%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.16%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	1.44%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.44%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.44%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.44%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.44%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	1.44%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.44%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.44%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.44%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.72%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment	0.72%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.72%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.72%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.72%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.72%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.72%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.72%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.72%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.72%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.72%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.72%
Sediment Slurry	Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry	0.72%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.72%

Visualization

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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005829	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBC	Environmental	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009131	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011432	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT718_2	Environmental	Open in IMG/M
3300012159	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT500_2	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012497	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.old.240510	Host-Associated	Open in IMG/M
3300012506	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.6.old.040610	Host-Associated	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012893	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S059-202B-1	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014864	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT231A'_16_10D	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025551	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026452	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 PU4	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300027871	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300031197 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300033480	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B	Environmental	Open in IMG/M
3300033557	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B	Environmental	Open in IMG/M
3300034076	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A5A4.2	Engineered	Open in IMG/M
3300034354	Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
F24TB_140382113	3300000550	Soil	VAYSPTQQRDLLAASCEDASEGKMPGPYALLRPETRLSAQDVETICAAARQYEASAANGRGER*
soilL2_101090173	3300003319	Sugarcane Root And Bulk Soil	YPPDVQRTLLSVSCQDATNGKMPGPYTLVRPETKLSLQDIETICAAARQAEANAANGQRQD*
Ga0062589_1017490771	3300004156	Soil	SASCDAASSGKMPGPYALLRPETRLSAQDVETICAAARQADTRAAGGAR*
Ga0063356_1007985004	3300004463	Arabidopsis Thaliana Rhizosphere	AVNFSEWSTYPPDVRRMLLESSCQDASAGKMPGVYASLQPETRLSARDVETICLAARQ*
Ga0063356_1017743042	3300004463	Arabidopsis Thaliana Rhizosphere	VAYSPAQQRDLLAASCEDASEGKMPGPYALLRPETRLSAQDVETICAAARQYEASAAN
Ga0063356_1040848152	3300004463	Arabidopsis Thaliana Rhizosphere	PARQRILLAESCQDVKAGKMPGAYALLHPEMQLSASDVETICAAARQAEAPASRDSQ*
Ga0062595_1023633542	3300004479	Soil	LLAVSCDDATSGKMPGPYTLLHPETRLSAHDIETICAATHHADAKAGNR*
Ga0062592_1002145884	3300004480	Soil	SCDDATSGKMPGPYTLVRPEARLSPQDIETICVAARQAEANTADGRRER*
Ga0062594_1023037621	3300005093	Soil	CDAASSGKMPGPYALLRPETRLSAQDVETICAAARQADARAARGPR*
Ga0065712_103621043	3300005290	Miscanthus Rhizosphere	PAQQRLLLAMSCDDATSGKMPGAYTLLRPETRLSSQDVETICAAARQADTGAAGGSR*
Ga0065715_111005501	3300005293	Miscanthus Rhizosphere	PSEAQRTLLSASCRDVSSGKMPGIYTVVRSETKLSPEDVETICTAARQTEANAADGLKQR
Ga0065705_103161751	3300005294	Switchgrass Rhizosphere	DDATSGKMPGAYTLVRPETRLSSQDVETICAAARQADTGAAGGSR*
Ga0070690_1011428302	3300005330	Switchgrass Rhizosphere	WAGYPPATQRTLLSASCDAASSGKMPGPYALLRPETRLSAQDVETICAAARQADTRAAGGAR*
Ga0066388_1004172001	3300005332	Tropical Forest Soil	NFSEWAAYSPDQQRILLSASCDDAKSGKMPGPYPFFKPETRLSRQDIETICAAAKPAGANTQRVTQ*
Ga0070666_112575782	3300005335	Switchgrass Rhizosphere	DVSAGKMPGPYTLLRPETRLSARDVETICEAARHAEANPAEGRREP*
Ga0068868_1012599812	3300005338	Miscanthus Rhizosphere	LLAKSCEDATNGKMPGAYTLLRPETRLSARDVETICEAARQADTRAGGSR*
Ga0070671_1004649131	3300005355	Switchgrass Rhizosphere	CDDATSGKMPGPYTRVRPETRLSSQDIETICVAARRAEGNTADGRKER*
Ga0008090_129737682	3300005363	Tropical Rainforest Soil	ASYSPEQQRTLLALSCEDASEGKMPGPYSRLRPETRLSAGDVETICAAARQAEAPAARVSQ*
Ga0070705_1016811692	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	EWTGYPPEAQRTLLSASCRDVASGKMPGVYTLVRSETKLSPEDVETICAAARQTEANAADGLKQR*
Ga0070708_1001510591	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	TCKDVSSGKMPGSPYTLLRPTARLSTQDIQTICDAARQGAADTAHRRAAQP*
Ga0070663_1006400531	3300005455	Corn Rhizosphere	WATYSPDQRRMLLAASCKDASDGKMPGVYAWLRQDTRLSAQDVETICAAARQPEAIAARKTSH*
Ga0070678_1001588961	3300005456	Miscanthus Rhizosphere	VSCDDATSGKMPGPYARVRPETRLSSQDIDTICVAARQAEANTADGRKER*
Ga0070698_1019235342	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MLLATSCDDARSGKMPGVYTRLRPETRLSAHDVETICAAARQVSSEVKP*
Ga0070741_107603241	3300005529	Surface Soil	TLLSASCEDVSSGKMPGPYTLVRPETKLSPQDVETICAASRQAAANADR*
Ga0070696_1008881302	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	PTAQQRGLLDLSCISAKAGKMPGAYAWLKPETKLSPQDIETICAAARQAQADAGGSR*
Ga0070665_1020028422	3300005548	Switchgrass Rhizosphere	YQPAQQRLLLATSCEDATNGKMPGVYTLLRPETRLSPQDVEAICAAAREADTRAAGGSR*
Ga0066905_1001677941	3300005713	Tropical Forest Soil	WVAYSAAQQRTLLAASCDDAKSGKMPGPYTFFKPETRLSAQDIETICAAARESEPKKAEPSQ*
Ga0066905_1007623213	3300005713	Tropical Forest Soil	EWAAYSPGEQLTLLVASCHDATEGKMPGRPWTLLHPETELSAHDVEAICAAARRAEANAADGH*
Ga0066905_1014504601	3300005713	Tropical Forest Soil	VSCDDATSGKMPGAYTFFKPETRLSAKDIETICTAARQSDARAGGAAP*
Ga0066903_1075776351	3300005764	Tropical Forest Soil	LSCQDASEGKMPGPYVWFRSETRLSASDVATICAAARQADARAGG*
Ga0066903_1087969752	3300005764	Tropical Forest Soil	QQRTLLTVSCDDVSSGKMPGAYALLRPETRLSAHDIQTVCAAARQANAHTTKASE*
Ga0074479_108616082	3300005829	Sediment (Intertidal)	YPPDVQRTLMSASCDDATSGKMPGPYALFRPEAKLSPQDIDTICAAARQR*
Ga0068862_1021760872	3300005844	Switchgrass Rhizosphere	LLAASCDDASTGRMPGPWTLLRPETRLSSRDIETICAAAQQTPARAAGGSQ*
Ga0066652_1013387212	3300006046	Soil	SCQDVSSGKMPGPYTLLRPETRLSPQDIETICAAARQAEANAADGRRHR*
Ga0075430_1000094252	3300006846	Populus Rhizosphere	VAYSPAQQRDLLAASCEDASEGKMPGPYALLRPETRLLAQDVETICAAARQYEASAANGRGER*
Ga0075429_1002140385	3300006880	Populus Rhizosphere	ASYQPEVQRTLLSASCQEASTGKMPGIYTWVRPETQLSAQDVETICAAARQAEAHAADGR
Ga0079215_100201084	3300006894	Agricultural Soil	SEWASYPPDVQRTLLSASCEDATSGKMPGPYTLLRPETKLSPHDIETICSAAREVTAKGGL*
Ga0079215_101487821	3300006894	Agricultural Soil	NFSEWAAYSPDQQRTLLAVSCDDATSGKMPGPYTLVRPEARLSPQDIETICVAARQAEANTADGRRER*
Ga0075426_114737561	3300006903	Populus Rhizosphere	SPGQQRKLLTESCQDVMSGKMPGPYTALRPETRLSSRDVDTICAAARKAEADAGHAR*
Ga0075424_1005520393	3300006904	Populus Rhizosphere	AYSAAQQRILLAASCEAAKSGKMPGPYALFKPNTRLSADDIETICAAARETDAKAAKPSQ
Ga0075436_1009692602	3300006914	Populus Rhizosphere	ATKGKMPGVYTLLHPETRLSPQDVETICAAARQADTRAVGGSR*
Ga0079216_112598671	3300006918	Agricultural Soil	NFSEWAAYSPDQQRTLLAVSCDDATSGKMPGPYTLVRPETRLSAQDVETICVAARQAEANTADGRRER*
Ga0111539_128777531	3300009094	Populus Rhizosphere	QRTLLAVSCDDATSGKMPGPYTLVRPDTRLSAQDVETICVAARQAEANTADGRRER*
Ga0105245_112755342	3300009098	Miscanthus Rhizosphere	VNFSEWAMYSPDQRRMLLAASCKDASDGKMPGVYAWLRQDTRLSAQDVETICAAARQPEAIAARKTSH*
Ga0075418_126512471	3300009100	Populus Rhizosphere	VAYSPAQQRDLLAASCEDASEGKMPGPYALLRPETRLSAQDVETICAAARQYEASAANGRGER*
Ga0115027_115010692	3300009131	Wetland	ASCKDATEGKMPGPYTWLHPEMRLSAQDVETICAVARQAEANAADRR*
Ga0105243_110934103	3300009148	Miscanthus Rhizosphere	SCQDAKNGKMPGSYTLLHPEMRLSSQDVETICAAARPAEAVVGADR*
Ga0105243_126011331	3300009148	Miscanthus Rhizosphere	MPGPYTLVSPETKLSPQDVETICTAARQAEANAADGRRQR*
Ga0075423_101987361	3300009162	Populus Rhizosphere	RMLLAVSCDDATSGKMPGPYTLLHPETRLSAQDVETICAAARQAAAPAAGVSR*
Ga0105249_105582063	3300009553	Switchgrass Rhizosphere	YQPAQQRLLLAMSCDDATSGKMPGAYTLLRPETRLSSQDVETICAAARQADTGAAGGSR*
Ga0105249_129435491	3300009553	Switchgrass Rhizosphere	MSCDDTRKGKMPGAYSVLRPETRLSPQDIETICAAARQADARAAGGSR*
Ga0126384_122620762	3300010046	Tropical Forest Soil	ESCQDASEGKMPGPYTLLHPEVRLSAQDVETICAAARQAGAADGH*
Ga0126306_102554104	3300010166	Serpentine Soil	ATNGKMPGAYTLLRPETRLSPQDVETICAAARQADTRAAGGSR*
Ga0126378_131819132	3300010361	Tropical Forest Soil	VLAMSCADVTNGKMPDGYTHVRPETRLSAQDIETICTAAREAEAQPASVSH*
Ga0126378_133288232	3300010361	Tropical Forest Soil	LSCADVTNNKMPDGYTHVRPETRLSAQDVETICTAARQAEAHSASASQ*
Ga0126383_101598031	3300010398	Tropical Forest Soil	VNFSEWASYQPELQRTLLSASCQDALTGKMPGPYTLLRPETRLLASDVETICAAARQAEVAAARVSQ*
Ga0134121_100191107	3300010401	Terrestrial Soil	SASCQDATSGKMPGVYALVRPETKLAPRDIETICAAAHQGSAER*
Ga0134123_106900641	3300010403	Terrestrial Soil	SGRMPGVYTLVRSETKLSPEDVETICTAARQTEANAADGLKQR*
Ga0105246_122708191	3300011119	Miscanthus Rhizosphere	VQRTLLSASCQDVSNGKMPGPYTLLRPETRLSPQDIETICAAARQAEANAADGRRQR*
Ga0137428_11082861	3300011432	Soil	EWTEYQPAQQRLLLAMSCDDATKGKMPGAYSVLRPETRLSPQDVETICVAARQAEANTADGRRER*
Ga0137344_10189874	3300012159	Soil	AYPPEVQRTLLSVSCQDVSDGKMPGPYTLLHPEMRVSVQDIETICAAARQADATATAAGGR*
Ga0137383_110559721	3300012199	Vadose Zone Soil	RTLLSASCDDVSSGKMPGPYTLVRPETKLSPQDVETICTAARQTEANAADGRRQR*
Ga0137372_103090071	3300012350	Vadose Zone Soil	QDATSGKMPGPYTLVRSETKLSPQDIETICAAARQAGANAADGGRQR*
Ga0137386_111952772	3300012351	Vadose Zone Soil	CRDVTAIKMPGPYTLLHPQTRLSAQDVETICAAARQAKGDAAGGP*
Ga0137385_111661821	3300012359	Vadose Zone Soil	SCDDVSSGKMPGPYTLVRPETKLSPQDVETICTAARQTEANAADGRRQR*
Ga0157319_10403642	3300012497	Arabidopsis Rhizosphere	MPGPYTLVPPETRLSAQDVETICVAARQAEANTANGRMER*
Ga0157324_10360462	3300012506	Arabidopsis Rhizosphere	LAASCDDVTTGKMPGPYTWLHPETRLTPEDVATICTAARQAGAHAASGL*
Ga0137373_101060536	3300012532	Vadose Zone Soil	VSSGKMPGFYTLVRPETRLSPQDVETICTAARQAEANAADGRRQR*
Ga0157284_101994561	3300012893	Soil	GYPPATQRTLLSASCDAASSGKMPGPYALLRPETRLSAQDVETICAAARQADTRAAGGAR
Ga0126375_112515522	3300012948	Tropical Forest Soil	SEWAAYSPERQRGLLVASCRDVTKGTMPGVYAVLHPEMRLSGRDIETVCAVSREVEASAADRR*
Ga0164302_117715461	3300012961	Soil	LAASCQDVSSGKMPGVYTRVRPETKLSPQDIDTICAGARQADANAADGRRQR*
Ga0164302_118867222	3300012961	Soil	TLLSTSCQDASSGKMPGFYTLVRPETRLSPKDVETICTAARQAEAQLAGGAK*
Ga0164304_104219661	3300012986	Soil	AVSCNDATSGKMPGPYRLLRPQTRLSAQDVETICGAARQAEANTADGRRER*
Ga0157374_116081743	3300013296	Miscanthus Rhizosphere	SCHDVSAGKMPGPYTLLRPETRLSARDVETICEAARHAEANPAEGRREP*
Ga0134078_101854161	3300014157	Grasslands Soil	ASCQDVRAGKMPGPYTVLHPETRLSTQDVETICAASRQADAKTAKASQ*
Ga0134078_102809102	3300014157	Grasslands Soil	TLLRPETRLSPQDVETVCAAARQDEANAADRRSQR*
Ga0180068_10267833	3300014864	Soil	ATSGKMPGPYTLVRPEARLSPQDIETICVAARQAEANTADGRRER*
Ga0157379_125224192	3300014968	Switchgrass Rhizosphere	VYTVVRSETKLSPEDVETICTAARQTEANAADGLKQR*
Ga0157376_129188452	3300014969	Miscanthus Rhizosphere	MLLAASCKDASDGKMPGVYAWLRQDTRLSAQDVETICAAARQPEAIAARKTSH*
Ga0132256_1025634852	3300015372	Arabidopsis Rhizosphere	SEWSTYQPIVQRLLLVASCQDAKNGKMPGSYTLLHPEMRLSSQDVETICAAARPAEAVVGADR*
Ga0132257_1040568562	3300015373	Arabidopsis Rhizosphere	ASCEDVSSGKMPGPYTLVRPETKLSPQDVETICEASRQSAANGADERKHR*
Ga0132255_1008967754	3300015374	Arabidopsis Rhizosphere	CDDATSGKMPGPYTLVRPEARLSPQDIETICVAARQAEANTADGRRER*
Ga0132255_1010899103	3300015374	Arabidopsis Rhizosphere	LLAVSCDDARNGKMPGPYTFLRPETRLSAQDIETICVAARQAEAPATGGR*
Ga0132255_1024643631	3300015374	Arabidopsis Rhizosphere	RTLLAVSCDDATSGKMPGPYTLVRPETRLSAQDVETICVAARQAEANTADGRRER*
Ga0132255_1025536433	3300015374	Arabidopsis Rhizosphere	GLLLLSCQDASNGKMPGAYTLLHPEMRLSAQDIETICAAARHAESNAAGGL*
Ga0132255_1047143171	3300015374	Arabidopsis Rhizosphere	QRVLLIESCQDVSQGRMPGPYTLLHPEMRLSPQDIETICAASRQEETVSR*
Ga0132255_1052551671	3300015374	Arabidopsis Rhizosphere	TLLAVSCDDATSGKMPGPYTRVRPETRLSSQDIETICVAARQAEANTAGGRKER*
Ga0132255_1058527202	3300015374	Arabidopsis Rhizosphere	GPYTLVRSETRLSAEDVETICVAARQAEANTADRRRER*
Ga0182033_101348474	3300016319	Soil	KLLSASCQTASEGKMPGPYTLVRPETKLSSQDIETICTAARQAEAAATRVLQ
Ga0190270_129324401	3300018469	Soil	LLAVSCDDATSGKMPGPYTLVRPETRLSAQDVETICVAARQAEANTADRRRER
Ga0066669_115943491	3300018482	Grasslands Soil	LSVSCQDATSGKMPGPYTRVRLETKLSPQNIETICAAARRAEADASDGGRHR
Ga0210379_105574262	3300021081	Groundwater Sediment	SCQDVSDGKMPGPYTLLHPEMRVSVQDIETICAAARQADATATAAGGR
Ga0126371_114605262	3300021560	Tropical Forest Soil	LLSASCQDALTGKMPGPYTLLRPETRLLASDVETICAAARQAEVAAARVSQ
Ga0210131_10386543	3300025551	Natural And Restored Wetlands	PDSQRTLLSASCKDAKTGKMPGSYTLLHPEMRLSAQDVETICAASPRAEAP
Ga0207645_106159931	3300025907	Miscanthus Rhizosphere	MSCDDATSGKMPGAYTLLRPETRLSSQDVETICAAARQADTGAAGGSR
Ga0207704_118330181	3300025938	Miscanthus Rhizosphere	WAAYSPEQQRLLLAVSCDDATSGKMPGPYTLLHPETRLSAHDIETICAATHHADAKVGNR
Ga0207711_112397421	3300025941	Switchgrass Rhizosphere	YSPAQQRMLLAVSCDDATSGKMPGLYTLQRSETRLSAEDVEAICAAARQAEARAADGR
Ga0207677_114124661	3300026023	Miscanthus Rhizosphere	QQRLLLAKSCEDATNGKMPGAYTLLRPETRLSARDVETICEAARQADTRAGGSR
Ga0207708_110584651	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	SCEDASAGKMPGPYTRLRPETQLSSQDIATICAAAHQTEASAAAVPVR
Ga0207674_116152231	3300026116	Corn Rhizosphere	AGYPPEVQRTLLVASCQDVSSGKMPGVYTRVRPETKLSLQDIDTICAGARQADANAADGRRQR
Ga0207683_105577391	3300026121	Miscanthus Rhizosphere	QRTLLAVSCDDATSGKMPGPYARVRPETRLSSQDIDTICVAARQAEANTADGRKER
Ga0256821_10381552	3300026452	Sediment	AERQRALLGASCQDASTGKMPGGAYTLFHPEAKLTAQDVETICAAAR
Ga0209056_104553132	3300026538	Soil	RAMLVESCYDVSEGKMPEPYTLLHPETRLSAQDVETICAVARQAEADAADRR
Ga0209397_106041052	3300027871	Wetland	SCKDATEGKMPGPYTWLHPEMRLSAQDVETICAVARQAEANAADRR
Ga0209382_103980822	3300027909	Populus Rhizosphere	VAYSPAQQRDLLAASCEDASEGKMPGPYALLRPETRLSAQDVETICAAARQYEASAANGRGER
Ga0268266_117749892	3300028379	Switchgrass Rhizosphere	AGYQPAQQRLLLATSCEDATNGKMPGVYTLLRPETRLSPQDVEAICAAAREADTRAAGGS
(restricted) Ga0255310_101706972	3300031197	Sandy Soil	SVSCQDAASGKMPGPYTFVRPETKLSPQDIETICAAARQAEANADDGRRHP
Ga0318528_101445494	3300031561	Soil	CQDASDGKMPGVYARLRPETRLSRQDVHTICAGARAAEANAAGVRR
Ga0318573_104061481	3300031564	Soil	HTASEGKMPGPYTLVRPETKLSSQDIETICTAARQAQAAAARVLQ
Ga0310813_102755741	3300031716	Soil	TAVNFSEWATYSPDQRRMLLAASCKDASDGKMPGVYAWLRQDTRLSAQDVETICAAARQPEAIAARKTSN
Ga0310813_102771204	3300031716	Soil	TLLSASCDAASSGKMPGPYALLRPETRLSAQDVETICAAARQADTRAAGGAR
Ga0310813_112224382	3300031716	Soil	SCDAATSGKMPGVYTLFKPETRLSAQDIQTICAAAREVALRATGDPCC
Ga0306917_105808711	3300031719	Soil	KLLSASCQTASEGKMPGPYTLVRPETKLSSQDIETICTAARQAQAAAARVLQ
Ga0307405_103000711	3300031731	Rhizosphere	PPDVQRTLLSVSCQDATSGKMPGPYTLVRPETKLSPQDIETICAAVHRADADAAHRR
Ga0318568_107218011	3300031819	Soil	SASCQTASEGKMPGPYALVRPETKLSSQDIETICTAARQAQAAAARVLQ
Ga0307413_120337571	3300031824	Rhizosphere	VSCDDATSGKMPGPYTLVRPETRLSAQDVETICAAARQAEANTADGRRER
Ga0307410_105478602	3300031852	Rhizosphere	VNFSEWAGYQPAQQRLLLALSCEDATSGKMPGPYTLVRPETRLSAQDVETICVAARQAEANTADGRRER
Ga0307410_106649791	3300031852	Rhizosphere	QQQQTLLAVSCDDARSGKMPGAYTLFRPETRLSTSDIETICAAARRADAPAAGGSR
Ga0310904_102903893	3300031854	Soil	ILLALSCQDASDGKMPGPYTRLRPETRLSAQDIETICAAARQVAAHAGRSR
Ga0310892_108071901	3300031858	Soil	ATSGKMPGPYTLVRPEARLSPQDIETICVAARQAEANTADGRRER
Ga0306921_108470003	3300031912	Soil	QTASEGKMPGPYTLVRPETKLSSQDIETICTAARQAQAAAARVLQ
Ga0310909_100694131	3300031947	Soil	LLALSCQDVSEGKMPGPYTLVRPETRLSRQDVETICAAARQADAQVRGVTQ
Ga0306926_104988041	3300031954	Soil	LSASCQTASEGKMPGPYTLVRPETKLSPQDIETICTAARQAEAAAARVLQ
Ga0307409_1027658702	3300031995	Rhizosphere	VNFSEWAGYQPAQQRLLLALSCEDATSGKMPGPYTLVRPETRLSAQDVETICVAARQAEANTADRRRER
Ga0310902_113121761	3300032012	Soil	EWAAYSPDQQRTLLAVSCDDATSGKMPGPYTLVRPDTRLSAQDVETICVAARQAEANTADRRRER
Ga0318556_106899682	3300032043	Soil	EWASYSREQQRILLALSCQDASDGKMPGVYARLRPETRLSRQDVHTICAGARAAEANAAGVRR
Ga0318533_106355681	3300032059	Soil	PERQRKLLSASCQTASEGKMPGPYTLVRPETKLSPQDIETICTAARQAEAAAARVLQ
Ga0310890_105687051	3300032075	Soil	SAVNFSEWTRYQPAQQRLLLAMSCDDARKGKMPGAYSVLRPETRLSPQDVETICAAARQADARAAGDSR
Ga0310890_112692121	3300032075	Soil	FSEWAGYSPEQQRTLLTLSCRDASEGKMPGIYTLLHPEMRLSAQDIETICTAARQAAPNTAGGF
Ga0310895_106255951	3300032122	Soil	RTLLTLSCRDASEGKMPGIYTLLHPEMRLSAQDIETICTAARQAAPNTAGGF
Ga0307415_1005675222	3300032126	Rhizosphere	VNFSEWAGYQRAQQRLLLALSCEDATSGKMPGPYTLVRPETRLSAQDVETICVAARQAEANTADGRRER
Ga0306920_1003022074	3300032261	Soil	RQRKLLSASCQTASEGKMPGPYTLVRPETKLSPQDIETICTAARQAEAAAARVLQ
Ga0310810_100442577	3300033412	Soil	SCRAASSGKMPGSLYTRLYPETRLSPQDVETICAASRSAEAEKP
Ga0310810_102645164	3300033412	Soil	MAQAVTEGLNAVDFSERTGYQPAQQRLLLAMSCDDARKGKMPGAYSVLRPETRLLPWDVETICAAARQADAGAAGGSR
Ga0310811_113969742	3300033475	Soil	TQRALLSASCRDVSEGKMPGPYTLLHPEMRLSSRDVETICAAARQVEVDAANGR
Ga0316620_103127004	3300033480	Soil	SEWAAYTPEQQQNLLAQSCQDMTEGKMPGAYTLLRPETRLSARDIETVCAAARQAKTNAALR
Ga0316617_1011329651	3300033557	Soil	AYPPEQQRKLLVASCKDATEGKMPGPYTWLHPEMRLSAQDIETICAVARQAEANAADRR
Ga0373898_046345_38_196	3300034076	Sediment Slurry	MLLAVSCDDATSGKMPGAYALLRPETRLSSQDVETICTAARQAEPHAARVSR
Ga0364943_0412954_30_170	3300034354	Sediment	MPGLYTLLRPETRLSAEDIETICTAARQAEANAADGRKHRTNAGDL

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.64
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.64
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F054646

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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