NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F054695

Metagenome / Metatranscriptome Family F054695

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F054695
Family Type Metagenome / Metatranscriptome
Number of Sequences 139
Average Sequence Length 42 residues
Representative Sequence MLYLLGGFAVLSGFLLLVYLFVNADPARLARGLKVTGIVI
Number of Associated Samples 118
Number of Associated Scaffolds 139

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 85.51 %
% of genes near scaffold ends (potentially truncated) 98.56 %
% of genes from short scaffolds (< 2000 bps) 94.96 %
Associated GOLD sequencing projects 112
AlphaFold2 3D model prediction Yes
3D model pTM-score0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (91.367 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(29.496 % of family members)
Environment Ontology (ENVO) Unclassified
(38.849 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(49.640 % of family members)



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Multiple Sequence Alignments

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Alignment of all the sequences in the family.
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 52.94%    β-sheet: 0.00%    Coil/Unstructured: 47.06%
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Variant

510152025303540MLYLLGGFAVLSGFLLLVYLFVNADPARLARGLKVTGIVISequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.48
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
91.4%8.6%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Bog Forest Soil
Freshwater Sediment
Soil
Soil
Vadose Zone Soil
Tropical Forest Soil
Bulk Soil
Grasslands Soil
Permafrost
Soil
Grasslands Soil
Soil
Soil
Hardwood Forest Soil
Soil
Rice Paddy Soil
Peatland
Tropical Peatland
Permafrost
Tropical Forest Soil
Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Switchgrass Rhizosphere
Plant Litter
Biofilm
Switchgrass Rhizosphere
Plant Roots
10.8%4.3%7.9%2.9%29.5%15.1%2.9%4.3%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGIcombinedJ26739_10020522233300002245Forest SoilVLYLLGGFAVLSGFLLLVYLFVNADPARLARGLKVTG
Ga0066672_1103337223300005167SoilMLYLLGGFVILCGVLLLGYLFVNTEPARLARTLKWTGITKPPSR*
Ga0066680_1079348313300005174SoilMLYLLGGFAVLSGFLLLVYLFINADPARLARGLKVTGIVIAVLA
Ga0066678_1076239423300005181SoilMPLLSLFGGLAILCGLLLLAYLFVNADPARLAQRLKWIGIGV
Ga0070709_1156880713300005434Corn, Switchgrass And Miscanthus RhizosphereMLYLLGGFAVLSGLLLLVYLFVNADPARLARGLKVTGIVIAVVAVATLAV
Ga0070708_10132621213300005445Corn, Switchgrass And Miscanthus RhizosphereMLYLLGGFAILCGVLLLGYLFVNTEPARLVRTLKWTGIVI
Ga0066701_1063828623300005552SoilMLYLVGGFAILGGLLLLVYLFVNADPARLARGLEVTGIVVAVAAVATL
Ga0066702_1050200423300005575SoilMPLLSLFGGLAILCGLLLLAYLFVNADPARLAQRLKWIGIG
Ga0066903_10109108513300005764Tropical Forest SoilVLYLLGGFAVLSGFLMLVYLFVNADPARLARGLKVTGIVI
Ga0066903_10172056223300005764Tropical Forest SoilMLYLLGGFAILGGLLMLVYLFVNADPARLARNLKWT
Ga0075273_1003951713300005902Rice Paddy SoilMLFLVGGVAILVGLLLLGWLFVNADPARLARGAKWTGI
Ga0070717_1016505013300006028Corn, Switchgrass And Miscanthus RhizosphereMPLLSLFGGLAVLGGLLLLAYLFVNADPARLAQRL
Ga0066696_1065183423300006032SoilMLLLLGGFAILCGLLLLGYLFVNADPAKLARGLKWG
Ga0066696_1109692213300006032SoilMLYLLGGFAVLSGFLLLVYLFVNADPARLARGLKVTGIVMGVLAVATLAIS
Ga0066659_1071429423300006797SoilMPLLSLFGGLAILCGLLLLAYLFVNADPARLAQRL
Ga0066659_1189537413300006797SoilLLSLFGGLAILCGLLLLAYLFVNADPARLAQRLKWIGIGVAALA
Ga0066660_1068767223300006800SoilMLYLLGGFAVLSGFLLLVYLFVNADPARLTRGLKFTGI
Ga0099793_1012657733300007258Vadose Zone SoilMLYLVGGFAILGGLLLLVYLFVNADPARLARGLKVTGIVVAVAAVATLAISGRLA
Ga0099829_1117242413300009038Vadose Zone SoilMLYLLGGFAILCGLLLLVYLFVNADPARLARIVKWAAVVAAIFAVVALIWSER
Ga0099829_1155160913300009038Vadose Zone SoilMLYLLGGFAILIGLLLLGYLFVNADPARLARIVKWAG
Ga0099829_1176695223300009038Vadose Zone SoilMIYLLGGFAVLSGFLLLIYLFVNADPARLARGLKVTGIIIAVAAVATLAI
Ga0099830_1124175313300009088Vadose Zone SoilMLYLLGGFAVLGGFLLLIYLFVNADPARLARGLKVTGIVIAVV
Ga0066709_10426253613300009137Grasslands SoilMLYLLGGFAILGGLLLLVYLFVNADPARLARGLKVSGIVVAIAAVATLAISGRL
Ga0126384_1164083813300010046Tropical Forest SoilMLYLFGGFAILGGLLLLVYLFVNADPARLARGLKVTGIVVAVAAVATLA
Ga0126384_1188777613300010046Tropical Forest SoilMLYLLGGFAVLSGFLLLVYLFVNADPARLARGLKVTGIVIAVVAV
Ga0126318_1066759913300010152SoilMLFLLGGVVLLGGLLLLVYLFVNADPMRLARNLKW
Ga0134084_1012795213300010322Grasslands SoilMPLLSLFGGLAILCGLLLLAYLFVNADPARLAQRLKWIGI
Ga0126372_1042306233300010360Tropical Forest SoilMLYLLGGFAILGGLLMLLYLFVNADPARLARNLKWTGITIAGVAIVLLILL
Ga0126378_1034049813300010361Tropical Forest SoilMIYVLGGFAVLSGFLMLIYLFVNADPARLARGLKVTGIVIAVLAVATLAV
Ga0137392_1040194513300011269Vadose Zone SoilMLYLLGGFAVLSGFLLLIYLFINADPARLARGLKVSGIVIAVLAVATL
Ga0137393_1067630213300011271Vadose Zone SoilMLPLLGGFAILIGLLLLGYLFVNADPARLARIVKWTAIVVAV
Ga0120134_110743813300012004PermafrostMLSLLGGFAILIGLLLLGYLFVNADPARLAKIVKWAGIVLAVLAV
Ga0137363_1092990223300012202Vadose Zone SoilMLYLLGGFAVLSGFLLLIYLFINADPARLARGLKVSGIVIAV
Ga0137399_1031930433300012203Vadose Zone SoilMLYLLGGVAILCGFLLLGYLFVNADPARLAKIVKW
Ga0137362_1057951813300012205Vadose Zone SoilMLYLLGGFAVLSGFLLLVYLFINADPARLARGLKVTGIVIAV
Ga0137360_1117359413300012361Vadose Zone SoilMLYLLGGFAVLSGFLLLIYLFINADPARLARGLKVSGIVIAVLAVATLAVSGRLAAL
Ga0137394_1136165223300012922Vadose Zone SoilMLYLLGGFAVLSGFLLLIYLFINADPARLARGLKVSGIVIAVLAVATLA
Ga0126375_1052950113300012948Tropical Forest SoilMVYLLGGFAILGGLLMLVYLFVNADPARLARNLKWTG
Ga0164300_1087272323300012951SoilMLYLLGGFAVLSGSLMLVYVFVNADPARLARGLKATGVVIAILAVATLAISGRL
Ga0164299_1085594023300012958SoilMLYLLGGFAVLSGFLLLIYLFVNADPARLARGLKVTGIVIAVLAVA
Ga0126369_1027009313300012971Tropical Forest SoilMLYLLGGFAVLTGFLLLVYLFVNADPARLARGLKVTGIVIAV
Ga0134087_1016790313300012977Grasslands SoilMLFLLGGFAILCGLLLLGYLFVNAEPAKLARNLKWGGLAG
Ga0182024_1054060633300014501PermafrostMLYLIGGLAILGGLMLLLYLFINADPAKLATGTKWVLVGLAVAL
Ga0182036_1087484023300016270SoilMLYLLGGFALLSGFLMLVYLFVNADPARLARGLKVTGIVIAVLAVATLAIS
Ga0182041_1106963213300016294SoilMIYVLGGFAVIVGFLMLVYLFVNADPARLARGLKATGIVIAIFAV
Ga0182041_1178346423300016294SoilVLYLLGGFAVLSGFLMLVYLFVNADPARLARGLKVTGIV
Ga0182033_1221760323300016319SoilMLYLLGGFAVLSGFLLLVYLFVNADPARLARGLKVTGI
Ga0182035_1125316023300016341SoilMLYLVGGFAVLGGFLLLVHLFVNADPARLARNLKWAGIAIGAVAVVA
Ga0182032_1000515873300016357SoilMLYLLGGFAVLSGFLLLVYLFVNADPARLARGLKV
Ga0182032_1112847123300016357SoilMLYLLGGFALLSGFLMLVYLFVNADPARLARGLKVTGIVIAVLAVATLAISG
Ga0182040_1148400813300016387SoilMLYLVGGFAVLGGFLLLVHLFVNADPARLARNLKWAGIAIGAAAIT
Ga0182039_1136264313300016422SoilMLYLVGGFAVLGGFLLLVHLFVNADPARLARNLKWAGIAIGAVA
Ga0187818_1056031123300017823Freshwater SedimentMLFLLGGVLLLGGFLLLVYLFVNADPVRLARNLKWA
Ga0187801_1037289413300017933Freshwater SedimentMLFLLGGVLLLGGFLLLVYLFVNADPVRLARNLKWTGI
Ga0187781_1073513723300017972Tropical PeatlandMLALVGGVAILVGLLLLVYLFVNANPAKLARGLKW
Ga0187770_1126978613300018090Tropical PeatlandMIYLLGGFAILSGFLMLIYLFVNADPARLARGLKVTGIVIAVLAVATL
Ga0066669_1204345223300018482Grasslands SoilMLYLLGGFAVLGGFLLLVYLFVNADPARLARGLKVTGIIIAVVA
Ga0179592_1048821313300020199Vadose Zone SoilMLYLVGGFALLSGFLLLVYLFVNADPARLARGLKVTGVVVAVAA
Ga0210403_1027853933300020580SoilMLYLLGGFAVLSGFLMLVYLFVNADPARLARGLKATGIVIAVLAV
Ga0179596_1054305813300021086Vadose Zone SoilMPLLSLFGGLAILCGLLLLAYLFVNADPARLAQRLKWIG
Ga0210405_1018950433300021171SoilVLYLLGGFAVLSGFLLLVYLFVNADPARLARGLKVTGIVIAVAAVAT
Ga0213874_1015498923300021377Plant RootsMLYLLGGFAVLSGFLLLVYLFVNADPARLARGLKVTAVIIGVVAVATLAI
Ga0213874_1026003213300021377Plant RootsMLYLLGGFAVLSGFLLLVYLFVNADPARLARGLKVTGIVI
Ga0210391_1098801313300021433SoilMLFLFGGVALLGGFLLLVYLFANADPVRLARNLKWTGIGLAAFAVI
Ga0213879_1028041423300021439Bulk SoilMIYLLGGFAILTGFLMLVYLFVNADPARLARGLKVTGI
Ga0213878_1019888713300021444Bulk SoilMLFLLGGVVLLVGFLLLVYLFVNADPAKLARNLKWT
Ga0210392_1062008823300021475SoilVLYLLGGFAVLSGFLLLVYLFVNADPARLARGLKVTGIVVAVAAFATLAIS
Ga0187846_1044396023300021476BiofilmMIYVLGGFAILGGFLMLVYLFVNADPARLARGLKVTGIVIAV
Ga0210402_1164617123300021478SoilMLYLLGGFAVLSGFLLLIYLFVNADPARLARGLKVSGIVIAVLAVA
Ga0242661_104634013300022717SoilMLYLLGGFAILSGFLLLVYLFVNADPARLARGLKV
Ga0207699_1029183133300025906Corn, Switchgrass And Miscanthus RhizosphereVLYLLGGFAVLSGFLLLVYLFVNADPARLARGLKVTGI
Ga0207662_1032782823300025918Switchgrass RhizosphereMLYFLGGFAILCGLLLLGWVFVNTSPARLARVLKWT
Ga0207665_1043717233300025939Corn, Switchgrass And Miscanthus RhizosphereMLYLLGGFAVLSGFLLLIYLFVNADPARLARGLKVTGI
Ga0207665_1085261313300025939Corn, Switchgrass And Miscanthus RhizosphereVLYLLGGFAVLSGFLLLVYLFVNADPARLARGLKVT
Ga0207703_1169006623300026035Switchgrass RhizosphereMLQLRGGFGILCGLLLLGWVFVNTSPTVLARVLKWA
Ga0209240_117875323300026304Grasslands SoilMLYLLGGFAILCGVLLLGYLFVNAEPARLARILKWSGIVVAGL
Ga0209647_127881213300026319Grasslands SoilMLFLLGGFAILCGVLLLGYLFVNADPAKLARTVKWAGLGGGVV
Ga0257161_107345923300026508SoilMLYLLGGFAILCGVLLLGYLFVNTEPARLARTLKWTG
Ga0209807_101331613300026530SoilMPLLSLFGGLAILCGLLLLAYLFVNADPARLAQRLKWI
Ga0209008_102301133300027545Forest SoilMLAVLGGVTILAGLLLLIYLFVNADPAKLARGLKWT
Ga0209003_111040413300027576Forest SoilMLYLLGGFAVLSGFLLLVYLFVNADPARLARLLNDPAR
Ga0209331_113672123300027603Forest SoilMLYLIGGFAILGGLLLLVYLFVNADPARLARGLKVSGIVVA
Ga0209248_1006254533300027729Bog Forest SoilMLYFLGGFAVLSGFLMLVYLFVNADPARLARGLKVTGIVIAVLAVATLA
Ga0209772_1012952023300027768Bog Forest SoilMLPLLGGFAILCGLLLLGYLFVNANPTRLARIVKWGG
Ga0209656_1026392523300027812Bog Forest SoilMLYLLGGFAVLGGFLLLVYLFVNADPARLARGLKVTGIVIA
Ga0209465_1037357513300027874Tropical Forest SoilMIYVLGGFAILGGFLLLVYLFVNADPARLARGLKVTGIV
Ga0137415_1068702623300028536Vadose Zone SoilMLYLLGGFAVLSGFLLLIYLFVNADPARLARGLKVSGIVIAVLAVATLAVSG
Ga0075394_1195362013300030969SoilMLYLIGGFAILGGFLLLVYLFVNADPARLARGLKVTGIVIAVLAVVTLAIS
Ga0318538_1014637033300031546SoilMLYVLGGFALLSGFLMLVYLFVNADPARLARGLKVTGIVIAI
Ga0318515_1064764713300031572SoilMIYVLGGFAVLGGFLMLVYLFVNADPARLARGLKATGIVIAI
Ga0310915_1122628213300031573SoilMIYVLGGFAVLGGFLMLVYLFVNADPARLARGLKVTGIVIAVLAVATLAISGR
Ga0310915_1125400923300031573SoilMLYVLGGFALLSGFLMLVYLFVNADPARLARGLKVTGIVIA
Ga0318561_1079571813300031679SoilMLYLLGGFAILGGLLMLVYLFVNADPTRLARNLKWTG
Ga0318574_1034916223300031680SoilMLYLLGGFALLSGFLMLVYLFVNADPARLARGLKVTGIVIAV
Ga0318496_1082768423300031713SoilMIYVLGGFAVLGGFLMLVYLFVNADPARLARGLKATGIVIAILA
Ga0318493_1016660713300031723SoilMLYLLGGFALLSGFLMLVYLFVNADPARLARGLKVT
Ga0318502_1019566513300031747SoilMLFLLGGLAILGGFLLLVYLFANADPARLARNLKWAGIAVAAVAV
Ga0318502_1026149733300031747SoilMLYVLGGFALLSGFLMLVYLFVNADPARLARGLNV
Ga0318494_1072195913300031751SoilMLYLLGGFAILGGLLMLVYLFVNADPARLARNLKWTGITIAGVAIV
Ga0318535_1037435013300031764SoilMIYVLGGFAVLSGFLMLVYLFVNADPVRLARGLKVTGIVIAVLAVATLAIS
Ga0318554_1035222123300031765SoilMLYLIGGFAVLGGFLLLVHLFVNADPARLARNLKWAGIAVGAVAV
Ga0318509_1080875523300031768SoilMIYVLGGFAVLSGFLMLVYLFVNADPVRLARGLKVTG
Ga0318521_1009014013300031770SoilMLYVLGGFALLSGFLMLVYLFVNADPARLARGLKVTG
Ga0318546_1018839833300031771SoilMLYFLGGFAVLGGFLLLIYLFVNADPARLARGLKVTGIVIAVLAV
Ga0318543_1012663613300031777SoilMLYVLGGFALLSGFLMLVYLFVNADPARLARGLKVT
Ga0318550_1049619913300031797SoilMLYLLGGFAVLSGFLMLVYLFVNADPARLARGLKVTGVVIAVLAVATLAI
Ga0318550_1056360523300031797SoilMLYLLGGFAVLSGFLLLVYLFVNADPARLARGLKVTGIVIAVVAVA
Ga0318497_1014308733300031805SoilMLYLLGGFAILGGLLMLVYLFVNADPTRLARNLKWTGIT
Ga0318497_1043541423300031805SoilMLYLLGGFAVLGGFLLLIYLFVNADPARLARGLKVTGIVIAVLA
Ga0318497_1073185423300031805SoilMLFLLGGLAILGGFLLLVYLFANADPARLARNLKWASIAVAAVA
Ga0318512_1003025333300031846SoilMLYLLGGFAVLSGFLMLVYLFVNADPARLARGLKVTGVVIAVLA
Ga0306919_1136789913300031879SoilMIYLLGGFAVLSGFLMLVYLFVNADPARLARGLKVTGIVI
Ga0306925_1202357823300031890SoilMLYLVGGFAVLGGFLLLVYLFVNADPARLARNLKWAGIAVAAVVVIAVILL
Ga0306925_1206191013300031890SoilMIYLLGGFAILCGFLLLVYLFVNADPAHLEAAGEA
Ga0306925_1210376223300031890SoilMLYLLGGFALLGGFLLLVHLFVNADPARLARNLKWAGIAIG
Ga0306925_1215995723300031890SoilMIYVLGGFAVLSGFLMLVYLFVNADPVRLARGLKVTGI
Ga0318536_1044438123300031893SoilMLYVLGGFALLSGFLMLVYLFVNADPARLARGLKVTGIVI
Ga0306923_1004109013300031910SoilMLYVLGGFALLSGFLMLVYLFVNADPARLARGLKV
Ga0306921_1009319113300031912SoilMLYLLGGFAVLGGFLLLIYLFVNADPARLARGLKVTG
Ga0306921_1104256833300031912SoilMLYLLGGFAVLSGFLLLVYLFVNADPARLARGLKIT
Ga0310916_1034576713300031942SoilMIYLLGGFAVLSGFLMLVYLFVNADPARLARGLKVTGIVIAVLAVATL
Ga0310910_1033919533300031946SoilMLYLLGGFALLSGFLMLVYLFVNADPARLARGLKVTGIV
Ga0310909_1127605213300031947SoilMLYLLGGFAVLGGFLLLIYLFVNADPARLARGLKVTGIVIAVL
Ga0306926_1109648913300031954SoilMLYLLGGFAVLSGFLMLVYLFVNADPARLARGLKVTGVVIA
Ga0306926_1116945623300031954SoilMLYLVGGFAVLGGFLLLVHLFVNADPARLARNLKWAAIAVGGVAV
Ga0307479_1123366713300031962Hardwood Forest SoilMLYLLGGFAVLSGFLMLVYLFVNADPARLARGLKVTGIVIAVA
Ga0318532_1033499713300032051SoilMIYVLGGFAVIVGFLMLVYLFVNADPARLARGLKATGIVIAIFAVAT
Ga0318532_1036964623300032051SoilLPELLLLGGFAILCGLLLLGYLFVNADPARLARVLKWTGIVLGA
Ga0318575_1038866513300032055SoilMLYLLGGFAVLSGFLMLVYLFVNADPARLARGLKVTGIVI
Ga0318533_1018328233300032059SoilMLYLLGGFAVLTGFLLLVYLFVNADPARLARGLKVSGI
Ga0318524_1077533623300032067SoilMIYVLGGFAVLSGFLMLVYLFVNADPVRLARGLKVTGIVIAVLAVATLA
Ga0306924_1056023733300032076SoilMLYLLGGFAVLSGFLMLVYLFVNADPARLARGLKVT
Ga0306920_10175062813300032261SoilMLYLVGGIAVLAGFLLLVQVFVNADPAWLARHLKWTGIAVGAVAV
Ga0348332_1165605723300032515Plant LitterMLFLLGGFAVLGGVLLLVYLFANADPARLARNLKW
Ga0335075_1123547713300032896SoilMPELALLGGVLILGGLLLLVYLFVNTDPAKLARALKW
Ga0335072_1148665123300032898SoilMLALLGGLLVLAGLLLLVYLFVNADPAKLASGLKWVAIGLA
Ga0335073_1010434343300033134SoilMLFLLGGVALLAGFLLLVYSFVNADPVRLARNLKWTGIGIAAVA
Ga0310914_1129565523300033289SoilMLYLLGGFAVLSGLLLLVYLFVNADPARLARGLRVTGIVIAVAAVAT
Ga0314861_0233140_723_8543300033977PeatlandMLALVGGVAILVGLLLLVYLFVNADPAKLARALKWTAIGAAGLI


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