Metagenome / Metatranscriptome Family F054697

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F054697
Family Type	Metagenome / Metatranscriptome
Number of Sequences	139
Average Sequence Length	55 residues
Representative Sequence	QGFVEGETLARRLVLGAVLDEADVTREVDIEARRVTIALRRHDGRKGGTR
Number of Associated Samples	130
Number of Associated Scaffolds	138

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.17 %
% of genes near scaffold ends (potentially truncated)	97.84 %
% of genes from short scaffolds (< 2000 bps)	89.21 %
Associated GOLD sequencing projects	122
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (97.122 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil (25.180 % of family members)
Environment Ontology (ENVO)	Unclassified (43.885 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.957 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 17.95% Coil/Unstructured: 82.05%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 138 Family Scaffolds
PF01258	zf-dskA_traR	71.01
PF01252	Peptidase_A8	15.94
PF00849	PseudoU_synth_2	2.17
PF01584	CheW	1.45
PF01479	S4	0.72
PF01619	Pro_dh	0.72
PF01627	Hpt	0.72

COG ID	Name	Functional Category	% Frequency in 138 Family Scaffolds
COG1734	RNA polymerase-binding transcription factor DksA	Transcription [K]	71.01
COG0597	Lipoprotein signal peptidase	Cell wall/membrane/envelope biogenesis [M]	31.88
COG0564	Pseudouridine synthase RluA, 23S rRNA- or tRNA-specific	Translation, ribosomal structure and biogenesis [J]	2.17
COG1187	Pseudouridylate synthase RsuA, specific for 16S rRNA U516 and 23S rRNA U2605	Translation, ribosomal structure and biogenesis [J]	2.17
COG0506	Proline dehydrogenase	Amino acid transport and metabolism [E]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.12 %
Unclassified	root	N/A	2.88 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.12 %
Unclassified	root	N/A	2.88 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.12 %
Unclassified	root	N/A	2.88 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	70.50 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.88 %
Unclassified	root	N/A	2.88 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	70.50 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2.88 %
Unclassified	root	N/A	2.88 %

Name	Rank	Taxonomy	Distribution
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	28.78 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	18.71 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	2.88 %
Unclassified	root	N/A	2.88 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	28.78 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	18.71 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2.88 %
Unclassified	root	N/A	2.88 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	28.78 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	18.71 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2.88 %
Unclassified	root	N/A	2.88 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	28.78 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	11.51 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2.88 %
Unclassified	root	N/A	2.88 %
Gemmatimonas	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas	1.44 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples	0.72 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	28.78 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	11.51 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2.88 %
Unclassified	root	N/A	2.88 %
Gemmatimonas aurantiaca	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas aurantiaca	1.44 %
uncultured Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000891\|JGI10214J12806_10248714	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	539	Open in IMG/M
3300000953\|JGI11615J12901_10101993	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	688	Open in IMG/M
3300002560\|JGI25383J37093_10017322	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas aurantiaca	2399	Open in IMG/M
3300002560\|JGI25383J37093_10092115	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas aurantiaca	899	Open in IMG/M
3300002561\|JGI25384J37096_10237343	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	532	Open in IMG/M
3300002908\|JGI25382J43887_10322473	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	664	Open in IMG/M
3300002908\|JGI25382J43887_10502027	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	513	Open in IMG/M
3300004024\|Ga0055436_10051000	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1123	Open in IMG/M
3300004281\|Ga0066397_10052033	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300004631\|Ga0058899_12248423	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300005172\|Ga0066683_10285948	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1024	Open in IMG/M
3300005178\|Ga0066688_10185241	All Organisms → cellular organisms → Bacteria	1317	Open in IMG/M
3300005181\|Ga0066678_10793211	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	626	Open in IMG/M
3300005206\|Ga0068995_10031061	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	887	Open in IMG/M
3300005444\|Ga0070694_100967085	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	705	Open in IMG/M
3300005445\|Ga0070708_101892682	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	553	Open in IMG/M
3300005545\|Ga0070695_100412279	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1027	Open in IMG/M
3300005554\|Ga0066661_10044557	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	2518	Open in IMG/M
3300005576\|Ga0066708_10590339	All Organisms → cellular organisms → Bacteria	713	Open in IMG/M
3300005598\|Ga0066706_10059910	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	2619	Open in IMG/M
3300005713\|Ga0066905_100370463	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1151	Open in IMG/M
3300006031\|Ga0066651_10371707	All Organisms → cellular organisms → Bacteria	765	Open in IMG/M
3300006057\|Ga0075026_100342513	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	827	Open in IMG/M
3300006797\|Ga0066659_10382542	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1102	Open in IMG/M
3300006846\|Ga0075430_100694011	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	839	Open in IMG/M
3300006853\|Ga0075420_101603163	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300006880\|Ga0075429_101550998	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	576	Open in IMG/M
3300006904\|Ga0075424_100175241	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	2275	Open in IMG/M
3300006954\|Ga0079219_10184116	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1162	Open in IMG/M
3300007258\|Ga0099793_10716186	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	505	Open in IMG/M
3300007788\|Ga0099795_10101489	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1129	Open in IMG/M
3300009089\|Ga0099828_10290001	All Organisms → cellular organisms → Bacteria	1471	Open in IMG/M
3300009137\|Ga0066709_100118721	All Organisms → cellular organisms → Bacteria	3298	Open in IMG/M
3300009162\|Ga0075423_12771910	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	537	Open in IMG/M
3300009553\|Ga0105249_13366750	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	514	Open in IMG/M
3300010080\|Ga0127448_182468	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300010085\|Ga0127445_1055709	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	630	Open in IMG/M
3300010087\|Ga0127492_1085299	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	566	Open in IMG/M
3300010088\|Ga0127476_1021524	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	630	Open in IMG/M
3300010090\|Ga0127471_1009148	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	652	Open in IMG/M
3300010097\|Ga0127501_1074021	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	789	Open in IMG/M
3300010105\|Ga0127470_1008212	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	676	Open in IMG/M
3300010112\|Ga0127458_1115203	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300010118\|Ga0127465_1098167	All Organisms → cellular organisms → Bacteria	757	Open in IMG/M
3300010119\|Ga0127452_1039822	Not Available	584	Open in IMG/M
3300010119\|Ga0127452_1152173	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	729	Open in IMG/M
3300010122\|Ga0127488_1128513	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	885	Open in IMG/M
3300010127\|Ga0127489_1021930	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	567	Open in IMG/M
3300010134\|Ga0127484_1166284	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	513	Open in IMG/M
3300010139\|Ga0127464_1091919	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	917	Open in IMG/M
3300010139\|Ga0127464_1222381	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	836	Open in IMG/M
3300010140\|Ga0127456_1005424	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	750	Open in IMG/M
3300010322\|Ga0134084_10035090	All Organisms → cellular organisms → Bacteria	1421	Open in IMG/M
3300010325\|Ga0134064_10066784	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1129	Open in IMG/M
3300010325\|Ga0134064_10336941	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	585	Open in IMG/M
3300010326\|Ga0134065_10175800	Not Available	762	Open in IMG/M
3300010361\|Ga0126378_13189202	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	522	Open in IMG/M
3300010364\|Ga0134066_10056507	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1025	Open in IMG/M
3300010373\|Ga0134128_10897591	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	981	Open in IMG/M
3300010399\|Ga0134127_12301600	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300010905\|Ga0138112_1092707	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300011270\|Ga0137391_10443758	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1104	Open in IMG/M
3300011403\|Ga0137313_1057164	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	685	Open in IMG/M
3300011420\|Ga0137314_1032693	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1269	Open in IMG/M
3300011427\|Ga0137448_1130498	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	691	Open in IMG/M
3300011433\|Ga0137443_1132105	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	732	Open in IMG/M
3300012039\|Ga0137421_1058036	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1063	Open in IMG/M
3300012096\|Ga0137389_11317341	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	616	Open in IMG/M
3300012168\|Ga0137357_1133358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	506	Open in IMG/M
3300012198\|Ga0137364_10489833	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	924	Open in IMG/M
3300012206\|Ga0137380_10557639	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1005	Open in IMG/M
3300012207\|Ga0137381_10323982	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1343	Open in IMG/M
3300012207\|Ga0137381_10323982	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1343	Open in IMG/M
3300012208\|Ga0137376_11590585	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	545	Open in IMG/M
3300012210\|Ga0137378_10951798	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	772	Open in IMG/M
3300012349\|Ga0137387_11276687	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	515	Open in IMG/M
3300012350\|Ga0137372_10816676	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	668	Open in IMG/M
3300012361\|Ga0137360_10375247	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1195	Open in IMG/M
3300012361\|Ga0137360_11473191	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	585	Open in IMG/M
3300012371\|Ga0134022_1074550	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	744	Open in IMG/M
3300012380\|Ga0134047_1246223	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300012391\|Ga0134035_1081298	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	555	Open in IMG/M
3300012392\|Ga0134043_1073117	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300012397\|Ga0134056_1300294	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	673	Open in IMG/M
3300012398\|Ga0134051_1094455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	707	Open in IMG/M
3300012399\|Ga0134061_1330073	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	526	Open in IMG/M
3300012469\|Ga0150984_113810799	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M
3300012532\|Ga0137373_10109851	All Organisms → cellular organisms → Bacteria	2393	Open in IMG/M
3300012685\|Ga0137397_11127964	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	569	Open in IMG/M
3300012925\|Ga0137419_11121409	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300012927\|Ga0137416_12203313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	507	Open in IMG/M
3300012944\|Ga0137410_10086986	All Organisms → cellular organisms → Bacteria	2295	Open in IMG/M
3300012972\|Ga0134077_10273581	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	704	Open in IMG/M
3300012972\|Ga0134077_10442185	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	568	Open in IMG/M
3300015054\|Ga0137420_1383657	All Organisms → cellular organisms → Bacteria	1370	Open in IMG/M
3300015242\|Ga0137412_10965919	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	613	Open in IMG/M
3300015245\|Ga0137409_10866626	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	738	Open in IMG/M
3300015373\|Ga0132257_102438319	Not Available	679	Open in IMG/M
3300017657\|Ga0134074_1021223	All Organisms → cellular organisms → Bacteria	2143	Open in IMG/M
3300017659\|Ga0134083_10126964	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1021	Open in IMG/M
3300017659\|Ga0134083_10282154	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	701	Open in IMG/M
3300018028\|Ga0184608_10015570	All Organisms → cellular organisms → Bacteria	2678	Open in IMG/M
3300018031\|Ga0184634_10088752	All Organisms → cellular organisms → Bacteria	1337	Open in IMG/M
3300018079\|Ga0184627_10305397	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	834	Open in IMG/M
3300018084\|Ga0184629_10086343	All Organisms → cellular organisms → Bacteria	1512	Open in IMG/M
3300019249\|Ga0184648_1062044	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	583	Open in IMG/M
3300019259\|Ga0184646_1093251	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	612	Open in IMG/M
3300019878\|Ga0193715_1057031	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	834	Open in IMG/M
3300020004\|Ga0193755_1143665	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	729	Open in IMG/M
3300020064\|Ga0180107_1015754	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	671	Open in IMG/M
3300021081\|Ga0210379_10282485	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300024330\|Ga0137417_1267947	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	538	Open in IMG/M
3300025910\|Ga0207684_10985701	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	705	Open in IMG/M
3300025962\|Ga0210070_1014378	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	894	Open in IMG/M
3300026277\|Ga0209350_1059799	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1091	Open in IMG/M
3300026296\|Ga0209235_1184315	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300026297\|Ga0209237_1072454	All Organisms → cellular organisms → Bacteria	1615	Open in IMG/M
3300026298\|Ga0209236_1095196	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1350	Open in IMG/M
3300026309\|Ga0209055_1050952	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1786	Open in IMG/M
3300026313\|Ga0209761_1112605	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1337	Open in IMG/M
3300026332\|Ga0209803_1021792	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	3148	Open in IMG/M
3300026334\|Ga0209377_1258448	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	573	Open in IMG/M
3300026536\|Ga0209058_1054707	All Organisms → cellular organisms → Bacteria	2245	Open in IMG/M
3300026538\|Ga0209056_10198010	All Organisms → cellular organisms → Bacteria	1474	Open in IMG/M
3300026540\|Ga0209376_1276285	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	693	Open in IMG/M
3300026550\|Ga0209474_10050440	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	2981	Open in IMG/M
3300027388\|Ga0208995_1038177	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	844	Open in IMG/M
3300027643\|Ga0209076_1087960	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	883	Open in IMG/M
3300027655\|Ga0209388_1035566	All Organisms → cellular organisms → Bacteria	1431	Open in IMG/M
3300027787\|Ga0209074_10190684	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	764	Open in IMG/M
3300027846\|Ga0209180_10058971	All Organisms → cellular organisms → Bacteria	2131	Open in IMG/M
3300027857\|Ga0209166_10024451	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	3726	Open in IMG/M
3300027882\|Ga0209590_10082695	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1879	Open in IMG/M
3300027909\|Ga0209382_11659414	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300028293\|Ga0247662_1015881	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1224	Open in IMG/M
3300028381\|Ga0268264_11431373	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	702	Open in IMG/M
3300032782\|Ga0335082_10495121	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1084	Open in IMG/M
3300034773\|Ga0364936_038518	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	849	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.81%
Host-Associated	Host-Associated	7.19%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.86%
Aquatic	Environmental → Aquatic	12.95%
Plants	Host-Associated → Plants	7.19%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.14%
Sediment	Environmental → Aquatic → Sediment	7.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.76%
Freshwater	Environmental → Aquatic → Freshwater	2.88%
Marine	Environmental → Aquatic → Marine	2.16%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.44%
Floodplain	Environmental → Terrestrial → Floodplain	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	72.66%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.91%
Loam	Environmental → Terrestrial → Soil → Loam	5.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.04%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.88%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.16%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.72%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.72%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.72%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	50.36%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	20.14%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.04%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.88%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.16%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.44%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.72%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.72%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	25.18%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	20.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	12.23%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	7.91%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	4.32%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.32%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.88%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.88%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.16%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.44%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.44%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.44%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.44%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.44%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.44%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.72%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.72%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.72%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.72%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300002560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300004024	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2	Environmental	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005206	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D2	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010080	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010085	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010087	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010088	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010090	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010097	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010105	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010112	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010118	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010119	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010122	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010127	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010134	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010139	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010140	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010905	Grasslands soil microbial communities from Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011403	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT166_2	Environmental	Open in IMG/M
3300011420	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT199_2	Environmental	Open in IMG/M
3300011427	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT418_2	Environmental	Open in IMG/M
3300011433	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT300_2	Environmental	Open in IMG/M
3300012039	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT534_2	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012168	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT860_2	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012371	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012380	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012391	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012392	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012397	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012398	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012399	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300019249	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019259	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019878	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m2	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020064	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT27_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025962	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D2 (SPAdes)	Environmental	Open in IMG/M
3300026277	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027388	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028293	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK03	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300034773	Sediment microbial communities from East River floodplain, Colorado, United States - 4_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10214J12806_102487141	3300000891	Soil	AATRAFQGFVEGEVLARRLQLGADATLDEPDLQREVDIEGRRVTIGLRRHDGRKGGTR*
JGI11615J12901_101019931	3300000953	Soil	VETFQGYVMGETLARQLVLGSLLEDADITREVDIEGRAATLGLRRHDGRKG*
JGI25383J37093_100173225	3300002560	Grasslands Soil	GETLARKLVLGAVLDEADVTREVDIEARRVTIALRRHDGRKGGTR*
JGI25383J37093_100921153	3300002560	Grasslands Soil	AAYQGYVEGETLARRTVLGSVFDEADITRAVEIEGRPVTIALRRHDGRKGGTR*
JGI25384J37096_102373431	3300002561	Grasslands Soil	AFQSFVEGETLARKTVLGAVFEAADVTSEVDIEGRRVTIALRRHDGRKGGG*
JGI25382J43887_103224732	3300002908	Grasslands Soil	EGETLARRMVLGAVLDEPDLQRDIDIEGRQTTIALRRHDGRKGGTR*
JGI25382J43887_105020271	3300002908	Grasslands Soil	FQSYVEGETLARKTVLGAVLDEADVTSEVDIEGRRVVIALRRHDGRKGGTR*
Ga0055436_100510001	3300004024	Natural And Restored Wetlands	RRHLPFIEGETLTRRTLLGGALDGADATQDVDIEGRRLTIAVRRHDGRKGKTR*
Ga0066397_100520333	3300004281	Tropical Forest Soil	PEVVAAVEAFQDYVMGETLARQLQLGNLLEDADITREVDIEGRAATLGLRRHDGRKG*
Ga0058899_122484231	3300004631	Forest Soil	AYQGFIEGETLAKRTVLGSVLPGADVTREVDIEGRRVTIAVRRHDGRKGGTG*
Ga0066683_102859481	3300005172	Soil	FVEGETLARKTVLGAVFEAADVTSEVDIEGRRVTIALRRHDGRKGGG*
Ga0066688_101852411	3300005178	Soil	FQHFVEGETLARRTVLGGVLEEADVTREVDIEGRRVTIALRRHDGRKGGTR*
Ga0066678_107932112	3300005181	Soil	SVAGAADIVAAVSAFQSFVEGETLARKLVLGSVLDEADVTRELDIEARRVTIALRRHDGRKGGTR*
Ga0068995_100310613	3300005206	Natural And Restored Wetlands	DVVAATRAFQGFVEGEVLARRLVLDAGLDKPDLQRDVDIEGRQVTIGLRRHDGRKGGTR*
Ga0070694_1009670853	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	GFVEGETLARRMVVGGGAGAALDEPDLQREVDIEGRRVTIALRRHDGRKGGTR*
Ga0070708_1018926822	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	LAAVAAFQDYVTGETLAKKLVLGTALDTADVRKDVDIDGRRVSIALRRHDGRKGETR*
Ga0070695_1004122793	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	GFVEGETLARRMVLGEGAALDEPDLVREVDIEGRQVTIGLRRHDGRKGGTR*
Ga0066661_100445575	3300005554	Soil	DIVAAVSAFQNFVEGETLARKVVLGAVFDEADVTRELDIEARRVTIAIRRHDGRKGGTR*
Ga0066708_105903393	3300005576	Soil	VEGETLARKTVLGAVFDEADVRSEVDIEGRRVTIALRRHDGRKGGGR*
Ga0066706_100599101	3300005598	Soil	VSAFQGFVEGETLTRKLVLGAVLEEADLKRDVDIEARRVTIALRRHDGRKGGTR*
Ga0066905_1003704633	3300005713	Tropical Forest Soil	GAPEVVAAVEAFQDYVMGETLARQLQLGNLLEDADITREVDIEGRAATLGLRRHDGRKG*
Ga0066651_103717071	3300006031	Soil	GFVEGETLARKTVLGAVFEAADVTSEVDIEGRRVTIALRRHDGRKGGG*
Ga0075026_1003425133	3300006057	Watersheds	GYVMGETLARRLVPGTVLDDADITREVDIEGRAVTLGLRRHDGRKG*
Ga0066659_103825423	3300006797	Soil	ADIVAAVSAFQSFVEGETLARKLVLGSVLDEADVTRELDIEARRVTIALRRHDGRKGGTR
Ga0075430_1006940111	3300006846	Populus Rhizosphere	AFQAFVEGETLARRTVLGSVLDDADLTREIDIEGYRVTIALRRHDGRKGGTR*
Ga0075420_1016031632	3300006853	Populus Rhizosphere	YVMGETLARRIVLGSTLNDADITRDVDIEGRAATLTLRRHDGRKGGTQR*
Ga0075429_1015509981	3300006880	Populus Rhizosphere	ADVVAATRAFQGLVEGEVLARRMVLGADAALDEPDVQRDVDIEGRPVTIGLRRHDGRKGGTR*
Ga0075424_1001752411	3300006904	Populus Rhizosphere	FVEGETLARRMVFGGGAGAALDEPDLQREVDIEGRRVTIALRRHDGRKGGTR*
Ga0079219_101841163	3300006954	Agricultural Soil	YATRVELSVSGAPDVLAAVEAFQDYVTGETLAKKLVLGTALDTADVRKDVDIDGRRVSIALRRHDGRKGETR*
Ga0099793_107161862	3300007258	Vadose Zone Soil	FVEGETLARRMVLGGVLDEPDLQRDVDIEGRRTTIALRRHDGRKGGTR*
Ga0099795_101014893	3300007788	Vadose Zone Soil	RAFSGFVEGETLARRMVVGAGAALDEPDLQREVDIEGRQVTIALRRHDGRKGGTR*
Ga0099828_102900014	3300009089	Vadose Zone Soil	YRSYVETETLARRVVLGEVLEDADITRAVDIEGRAVTIALRRHDGRKGGHR*
Ga0066709_1001187211	3300009137	Grasslands Soil	EDVVSAAAAFQGFIEGETLARKTVLGSILEEADVTREVDIEGRRVTIALRRHDGRKGGTR
Ga0075423_127719102	3300009162	Populus Rhizosphere	YVSGETLALRLALGNLLDDADITREVDIEGRAVTLGLRRHDGRKG*
Ga0105249_133667501	3300009553	Switchgrass Rhizosphere	VVAATRAFQGFVEGEVLARRLVLGAGAALDEPDLQRDVDIEGRRVTIGLRRHDGRKGGTR
Ga0127448_1824681	3300010080	Grasslands Soil	GTFKSYVEGETLARKTVLGAVLDEPDVTSEVDIEGRRVTIALRRHDGRKGGTR*
Ga0127445_10557092	3300010085	Grasslands Soil	GPEDVVAAVGTFKSYVEGETLARKTVLGAVLDEPDVTSEVDIEGRRVTIALRRHDGRKGGTR*
Ga0127492_10852992	3300010087	Grasslands Soil	AIATFQGYVEGETLARKTVLGAVLDEADVTSEVDIEGRRVVIALRRHDGRKGGTR*
Ga0127476_10215242	3300010088	Grasslands Soil	SVAGAQEIVAAVSAFQGFVEGETLARKLVLGAVLDEADVTREVDIEARRVTIALRRHDGRKGGTR*
Ga0127471_10091482	3300010090	Grasslands Soil	RIELSVAGAAEIVAAVSAFQGFVEGETLARKLVLGAVLDEADVTREVDIEARRVTIALRRHDGRKGGTR*
Ga0127501_10740213	3300010097	Grasslands Soil	ETLARKLVLGAVLDEADVTREVDIEARRVTIALRRHDGRKGGTR*
Ga0127470_10082123	3300010105	Grasslands Soil	FQSFVEGETLARKLVLGSVLDEADVTRELDIEARRVTIALRRHDGRKGGTR*
Ga0127458_11152033	3300010112	Grasslands Soil	GPEDVVAAVGTLKSYVEGETLARKTVLGAVLDEPDVTSEVDIEGRRVTIALRRHDGRKGGTR*
Ga0127465_10981673	3300010118	Grasslands Soil	EGETLARRLVLGTVLDDADVTREVDIEARRVTIALRRHDGRKGGTR*
Ga0127452_10398222	3300010119	Grasslands Soil	GPEDVVSAIGTYQSYVEGETLARKTVLGAVLDAADVTSEVDIDGRRVVIALRRHDGRKGGTR*
Ga0127452_11521731	3300010119	Grasslands Soil	LSVAGAQEIVAAVAAFQGFVEGETLARKLVLGAVLDEADVTREVDIEARRVTIALRRHDGRKGGTR*
Ga0127488_11285133	3300010122	Grasslands Soil	LSVAGPDDVVAAVATFQSYVEGETLARKTVLGAVLDEADVTSEVDIEGRRVVIALRRHDGRKGGTR*
Ga0127489_10219302	3300010127	Grasslands Soil	EGETLARKTVLGAVLDEADVTSEVDIEGRRVIIALRRHDGRKGGTR*
Ga0127484_11662842	3300010134	Grasslands Soil	GTYQSYVEGETLARKTVLGAVLDAADVTSEVDIDGRRVVIALRRHDGRKGGTR*
Ga0127464_10919193	3300010139	Grasslands Soil	AAVATFQGYVEGETLARKTVLGAVLDEADVTSEVDIEGRRVIIALRRHDGRKGGTR*
Ga0127464_12223811	3300010139	Grasslands Soil	RIELSVAGAQEIVAAVSAFQGFVEGETLARKLVLGAVLDEADVTREVDIEARRVTIALRRHDGRKGGTR*
Ga0127456_10054241	3300010140	Grasslands Soil	TLARRMVIGTALDEPDLQRDVEIEGRRTTIALRRHDGRKGGTR*
Ga0134084_100350904	3300010322	Grasslands Soil	EIVAAVSAFQGFVEGETLARKLVLGAVLDEADVTREVDIEARRVTIALRRHDGRKGGTR*
Ga0134064_100667841	3300010325	Grasslands Soil	AVSAFQSFVEGETLARKLVLGSVLDEADVTRELDIEARRVTIALRRHDGRKGGTR*
Ga0134064_103369411	3300010325	Grasslands Soil	FQSFVEGETLARKTVLGAVFEAADVTSEVDIEGRRVTIALRRHDGRKGGG*
Ga0134065_101758003	3300010326	Grasslands Soil	DDVVAAVATFQSYVEGETLARKTVLGAVLDEADVTSEVDIEGRRVVIALRRHDGRKGGTR
Ga0126378_131892022	3300010361	Tropical Forest Soil	LARRMVFDTALDEPDLQRDVDIEGRQTTIALRRHDGRKGGTR*
Ga0134066_100565073	3300010364	Grasslands Soil	DDVVAAVATFQGYVEGETLARKTVLGAVLDEADVTSEVDIEGRRVIIALRRHDGRKGGTR
Ga0134128_108975913	3300010373	Terrestrial Soil	QAFVEGETLARRTQLGTVLDDADLTREMDIEGYRVTIALRRHDGRKGGTR*
Ga0134127_123016002	3300010399	Terrestrial Soil	IELSIAGADDVVAATAAFQGFVEGETLARKMVVGGVLGEADLTRELDIEGRAVTIAVRRYDGRKGGTR*
Ga0138112_10927071	3300010905	Grasslands Soil	AIGTYQSYVEGETLARKTVLGAVLDAADVTSEVDIEGRRVVIALRRHDGRKGGTR*
Ga0137391_104437581	3300011270	Vadose Zone Soil	EAAVSAFQGFVEGETLARKVVLGSVFDEADLTRELDIDARRVTIALRRHDGRKGGTR*
Ga0137313_10571642	3300011403	Soil	IELSVAGSDEVVGAIAAFQSFVEGETLARKTVLGGVLEAADLTRELEIDGRPVTIAVRRHDGRKGGTR*
Ga0137314_10326934	3300011420	Soil	GEVLARRMVLDAALDEPDLQRDVDIEGRRVTIGLRRHDGRKGGTR*
Ga0137448_11304983	3300011427	Soil	VEGETLARKTVLGGVLEAADLTRELEIDGRPVTIAVRRHDGRKGGTR*
Ga0137443_11321053	3300011433	Soil	AGSDEVVGAIAAFQSFVEGETLARKTVLGGVLEAADLTRELEIDGRPVTIAVRRHDGRKGGTR*
Ga0137421_10580363	3300012039	Soil	TRAFQGFVEGEVLARRMVLDAALDEPDLQRDVDIEGRRVTLGLRRHDGRKGGTR*
Ga0137389_113173412	3300012096	Vadose Zone Soil	AVETFQGYVMGETLARQLVLGSLLEDADITREVDIEGRAATLGLRRHDGRKG*
Ga0137357_11333582	3300012168	Soil	QGVVEGEVLARRMVQEGELDEPHLLSHAQIEGRRVTLGLRRHDGRKCGTR*
Ga0137364_104898333	3300012198	Vadose Zone Soil	QNFVEGETLARKLVLGSVLDEADVTRELDIEARRVTIALRRHDGRKGGTR*
Ga0137380_105576393	3300012206	Vadose Zone Soil	AGETLARRVLLGEVLEEADLTREVDIEARRVTIALRRHDGRKGGTR*
Ga0137381_103239821	3300012207	Vadose Zone Soil	VSAFQGFVQGETLARKLVLGAVLDEADVTREVDIEARRVTIALRRHDG
Ga0137381_103239822	3300012207	Vadose Zone Soil	MSGAPDVLAAVAAFQDYVTGETLAKKLVLGTALDAADVRKDVDIDGRRVSLALRRHDGRKGETR*
Ga0137376_115905852	3300012208	Vadose Zone Soil	AFQGFVEGETLARRMLLGEGAELDEPDLQRDVDIEGRRVTIGLRRHDGRKGGTR*
Ga0137378_109517983	3300012210	Vadose Zone Soil	QGFVAGETLARKVVLGDVLHEADLTREVDIEARRVTIALRRHDGRKGGTR*
Ga0137387_112766871	3300012349	Vadose Zone Soil	AGADDVVAATAAFQSFVEGETLARKTVLGGVLDEADVTREVDIEGRPVTIAVRRHDGRKGGTR*
Ga0137372_108166761	3300012350	Vadose Zone Soil	LSVAGAADIVAAVSAFQNFVEGETLARKLVLGSVLDEADVTRELDIEARRVTIALRRHDGRKGGTR*
Ga0137360_103752471	3300012361	Vadose Zone Soil	FQAFVEGETLARRTVLGAVLDDADLTREVDIEGYRVTIALRRHDGRKGGTR*
Ga0137360_114731912	3300012361	Vadose Zone Soil	SAFQGFVEGETLARKLVLGTVLDEADLTREVDIEARRVTIALRRHDGRKGGTR*
Ga0134022_10745501	3300012371	Grasslands Soil	LSVAGAAEIVAAVSAFQGFVEGETLARKLVLGAVLDEADVTREVDIEARRVTIALRRHDGRKGGTR*
Ga0134047_12462233	3300012380	Grasslands Soil	VATFQSYVEGETLARKTVLGAVLDEPDVTSEVDIEGRRVTIALRRHDGRKGGTR*
Ga0134035_10812981	3300012391	Grasslands Soil	VVAAVSAFQGFVEGETLTRKLVLGAVLEEADLKRDVDIEARRVTIALRRHDGRKGGTR*
Ga0134043_10731173	3300012392	Grasslands Soil	AFQGFVEGETLTRKLVLGAVLEEADLKRDVDIEARRVTIALRRHDGRKGGTR*
Ga0134056_13002941	3300012397	Grasslands Soil	ETLARRTVLGTVFDEADVRSEVDIEGRRVTIALRRHDGRKGGGR*
Ga0134051_10944552	3300012398	Grasslands Soil	VVSAAAAFQGFIEGETLARKTVLGSILEEADVTREVDIEGRRVTIALRRHDGRKGGTR*
Ga0134061_13300731	3300012399	Grasslands Soil	GETLARKTVLGSILEEADVTREVDIEGRRVTIALRRHDGRKGGTR*
Ga0150984_1138107993	3300012469	Avena Fatua Rhizosphere	FQSFVEGETLARKTLLGAVLDGADVTREMDIEGRRVILSVRRHDGRKGGTR*
Ga0137373_101098515	3300012532	Vadose Zone Soil	AAEIVEAVSAFQGLVEGETLARKVVLGTVLDHADVTREMDIEARRVTIALRRHDGRKGGTR*
Ga0137397_111279642	3300012685	Vadose Zone Soil	AFVEGETLARRTVLGSVLGDADLTREVDIEGYRVTIALRRHDGRKGGSR*
Ga0137419_111214091	3300012925	Vadose Zone Soil	ADDVVAATAAFQGFVEGETLARKVILGNVLAEADVTRELDIEGRSVTIAVRRHDGRKGGTR*
Ga0137416_122033132	3300012927	Vadose Zone Soil	SAFQGFVEGETLARKLVLGTVLDEADVTREVDIEARRVTIALRRHDGRKGGTR*
Ga0137410_100869865	3300012944	Vadose Zone Soil	VVAATRAFSGFVEGETLARRMLLGAGAALDEPDLQREVDIEGRRVTIALRRHDGRKGGTR
Ga0126375_106005353	3300012948	Tropical Forest Soil	TLARKLVLGSVLDEADLKREVDIEARRVTIALRRHDGRKGGTR*
Ga0134077_102735811	3300012972	Grasslands Soil	QGFVEGETLARRLVLGTVLDEADVTREVDIEARRVTIALRRHDGRKGGTR*
Ga0134077_104421852	3300012972	Grasslands Soil	FSGFVEGETLARRMVLGGAGAVLDEPDLQREVDIEGRRVTIALRRHDGRKGGTR*
Ga0137420_13836574	3300015054	Vadose Zone Soil	VSAFQGFVEGETLARKLVLGTVLDEADVTREVDIEARRVTIALRRHDGRKGGTR*
Ga0137412_109659192	3300015242	Vadose Zone Soil	EAFQDYVTGETLAKKLVLGTALATADVRKDVDIDGRRVSIALRRHDGRKGETR*
Ga0137409_108666261	3300015245	Vadose Zone Soil	FVEGETLARRMVLGEGAELDEPDLQRDMDIEGRRVTIGLRRHDGRKGGTR*
Ga0132257_1024383192	3300015373	Arabidopsis Rhizosphere	LVEGETLARKVVLGAVLDRADVTREVDIEARRVTIALRRHDGRKGGTR*
Ga0134074_10212231	3300017657	Grasslands Soil	AFQGFVEGETLARRLVLGTVLDEADVTREVDIEARRVTIALRRHDGRKGGTR
Ga0134083_101269643	3300017659	Grasslands Soil	AAIATFQGYVEGETLARKTVLGAVLDEADVTSEVDIEGRRVVIALRRHDGRKGGTR
Ga0134083_102821541	3300017659	Grasslands Soil	RIELSVTGAAEVVAAVAAHQNFVEEETLTRKSWLGGVLPEADVTQDVDIDGRGVTIALRRHDGRKV
Ga0184608_100155705	3300018028	Groundwater Sediment	EGETLARRMLLGAGALDEPDLQREVDIEGRLVTIALRRHDGRKGGTR
Ga0184634_100887524	3300018031	Groundwater Sediment	GETLARRIVLGAALDDADITRDVDIAGRAVTLALRRHDGRKGGTLR
Ga0184627_103053973	3300018079	Groundwater Sediment	AVAAYQAYVEGETLTRRLVLGGVLEPADMTQDVDLDARRVRIAMRRHDGRKGGP
Ga0184629_100863431	3300018084	Groundwater Sediment	RAFLGFVEGEVVARRMVLGEDAALDEPDLQRDVDIEGRRVTIALRRHDGRKGGAR
Ga0184648_10620442	3300019249	Groundwater Sediment	FVEGETLTRKALFGADLPEADVRQDVDIDGRRVTIALRRHDGRKV
Ga0184646_10932512	3300019259	Groundwater Sediment	AFQAFVEGETLARRTVLGTVLGDADLTREVDIEGYRVTIALRRHDGRKGGNR
Ga0193715_10570311	3300019878	Soil	AQHGAEEIVAAVSAFQSFVEGETLARKIVLGAVLSAADVTREVDIDARRVTIALRRHDGRKGGTR
Ga0193755_11436651	3300020004	Soil	SGFVEGETLARRMVLGGAGAALDEPDLQREVDIEGRRVTIALRRHDGRKGGTR
Ga0180107_10157542	3300020064	Groundwater Sediment	EGETLTRRLVLGGSLEPADVKQEVDLDGRRVPIALRRHDGRKGGP
Ga0210379_102824853	3300021081	Groundwater Sediment	GEVLARRMVLGADAVLDEPDLQRDVDIEGRRVTIALRRHDGRKGGAR
Ga0137417_12679471	3300024330	Vadose Zone Soil	SYVETETLARRLVLGEVVEDADITREVDIEGRGVTIALRRHDGRKGGHR
Ga0207684_109857011	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	IVAAVSAFQSFVEGETLTRKIVLGAVLEEADLKREVDIEARRVTIALRRHDGRKGGTR
Ga0210070_10143783	3300025962	Natural And Restored Wetlands	DVVAATRAFQGFVEGEVLARRLVLDAGLDKPDLQRDVDIEGRQVTIGLRRHDGRKGGTR
Ga0209350_10597991	3300026277	Grasslands Soil	YVEGETLARKTVLGAVLDEADVTSEVDIEGRRVVIALRRHDGRKGGTR
Ga0209235_11843151	3300026296	Grasslands Soil	QGFVEGETLARRLVLGAVLDEADVTREVDIEARRVTIALRRHDGRKGGTR
Ga0209237_10724541	3300026297	Grasslands Soil	AGAADIVAAVSAFQNFVEGETLARKLVLGSVLDQADVTRELDIEARRVTIALRRHDGRKGGTR
Ga0209236_10951964	3300026298	Grasslands Soil	YQGYVEGETLARRTVLGSVFDEADITRAVEIEGRPVTIALRRHDGRKGGTR
Ga0209055_10509521	3300026309	Soil	FVEGETLARRLVLGSVFEEADVTRELDIEARRVTIALRRHDGRKGGTR
Ga0209761_11126054	3300026313	Grasslands Soil	AFQSFVEGETLARKTVLGAVFEAADVTSEVDIEGRRVTIALRRHDGRKGGG
Ga0209803_10217927	3300026332	Soil	AIATFQGYVEGETLARKTVLGAILDEADVTSEVDIEGRRVVIALRRHDGRKGGTR
Ga0209377_12584481	3300026334	Soil	EVVAATAAFQGFVEGETLARKTVLGAVFEAADVTSEVDIEGRRVTIALRRHDGRKGGG
Ga0209058_10547071	3300026536	Soil	QSFVEGETLARKLVLGSVLDEADVTRELDIEARRVTIALRRHDGRKGGTR
Ga0209056_101980104	3300026538	Soil	EGETLARRLVLGTVLDDADVTREVDIEARRVTIALRRHDGRKGGTR
Ga0209376_12762853	3300026540	Soil	FVEGETLARKTVLGAVFEAADVTSEVDIEGRRVTIALRRHDGRKGGG
Ga0209474_100504401	3300026550	Soil	GRRGRWVATFQSYVEGETLARKTVLGAVLDEADVTSEVDIEGRRVVIALRRHDGRKGGTR
Ga0208995_10381771	3300027388	Forest Soil	LSLDLQSAGRAPARRLVLGTVLDEADVTREVDIESRRVTIALRRHDGRKGGTR
Ga0209076_10879601	3300027643	Vadose Zone Soil	ETLARRMVLGEGAGLDEPDLQREVDIEGRRITIALRRHDGRKGGTR
Ga0209388_10355664	3300027655	Vadose Zone Soil	AGAAEIVAAVSAFQGFVEGETLARKLVLGTVLEEADVTREVDIEARRVTIALRRHDGRKGGTR
Ga0209074_101906843	3300027787	Agricultural Soil	SVAGAEEIVAAVSAFQSFVEGETLARKIVLGAVLEEADVTRNIDIEARQVTIALRRHDGRKGGTR
Ga0209180_100589714	3300027846	Vadose Zone Soil	ATRAFQGFVEGETLARRMVLGGGAVLDEPDLQREVDIEGRRITIALRRHDGRKGGTR
Ga0209166_100244517	3300027857	Surface Soil	QGFVEGETLARRMVYDAALDEPAPDLQRDVDIEGRRITIALRRHDGRKGGTR
Ga0209590_100826951	3300027882	Vadose Zone Soil	EGETLARRTVLGGVLEEADVTREVDIEGRRVTIALRRHDGRKGGTR
Ga0209382_116594141	3300027909	Populus Rhizosphere	AEVVEAVEAYKSFVEGETLTRKALFGADLPDADVRQDVDIDGRRVTIALRRHDGRKA
Ga0247662_10158811	3300028293	Soil	GAEDVVAATRAFQGFVEGEVLARRLVLGAGAALDEPDLQRDVDIEGRRVTIGLRRHDGRKGGTR
Ga0268264_114313732	3300028381	Switchgrass Rhizosphere	RIELSVAGAEDVVAATRAFQGFVEGEVLARRLVLGAGAALDEPDLQRDVDIEGRRVTIGLRRHDGRKGGTR
Ga0335082_104951211	3300032782	Soil	YTTRIDMSVSGAPAVVDAAEMFRQYVEEETLARETVLGAVLDEADITRDVDIEGHTVTIALRRHGRKGGSR
Ga0364936_038518_2_154	3300034773	Sediment	QAFVEGETLARRTVLGSVLDDADLTRDVDIEGYRVTIALRRHDGRKGGTR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F054697

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences