Metagenome / Metatranscriptome Family F054769

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F054769
Family Type	Metagenome / Metatranscriptome
Number of Sequences	139
Average Sequence Length	64 residues
Representative Sequence	MASQTKTKLYKVESKSAKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLIVRIDKDRLIITKFKD
Number of Associated Samples	102
Number of Associated Scaffolds	139

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	23.19 %
% of genes near scaffold ends (potentially truncated)	37.41 %
% of genes from short scaffolds (< 2000 bps)	82.73 %
Associated GOLD sequencing projects	99
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (53.957 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (20.144 % of family members)
Environment Ontology (ENVO)	Unclassified (26.619 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.640 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 4.35% β-sheet: 28.26% Coil/Unstructured: 67.39%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 139 Family Scaffolds
PF00069	Pkinase	2.88
PF02518	HATPase_c	2.88
PF00534	Glycos_transf_1	2.16
PF16916	ZT_dimer	2.16
PF08282	Hydrolase_3	2.16
PF01702	TGT	1.44
PF02735	Ku	1.44
PF00582	Usp	0.72
PF13483	Lactamase_B_3	0.72
PF00535	Glycos_transf_2	0.72
PF00011	HSP20	0.72
PF01406	tRNA-synt_1e	0.72
PF08279	HTH_11	0.72
PF00382	TFIIB	0.72
PF01798	Nop	0.72
PF13632	Glyco_trans_2_3	0.72
PF04095	NAPRTase	0.72
PF07366	SnoaL	0.72
PF03358	FMN_red	0.72

COG ID	Name	Functional Category	% Frequency in 139 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	11.51
COG0560	Phosphoserine phosphatase	Amino acid transport and metabolism [E]	2.16
COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	Coenzyme transport and metabolism [H]	2.16
COG1877	Trehalose-6-phosphate phosphatase	Carbohydrate transport and metabolism [G]	2.16
COG2217	Cation-transporting P-type ATPase	Inorganic ion transport and metabolism [P]	2.16
COG3769	Mannosyl-3-phosphoglycerate phosphatase YedP/MpgP, HAD superfamily	Carbohydrate transport and metabolism [G]	2.16
COG0343	Queuine/archaeosine tRNA-ribosyltransferase	Translation, ribosomal structure and biogenesis [J]	1.44
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	1.44
COG1549	Archaeosine tRNA-ribosyltransferase, contains uracil-DNA-glycosylase and PUA domains	Translation, ribosomal structure and biogenesis [J]	1.44
COG0018	Arginyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.72
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.72
COG0143	Methionyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.72
COG0215	Cysteinyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.72
COG1488	Nicotinic acid phosphoribosyltransferase	Coenzyme transport and metabolism [H]	0.72
COG1498	Box C/D ribonucleoprotein Nop56/Prp31/SIK1 subunit	Translation, ribosomal structure and biogenesis [J]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.96 %
All Organisms	root	All Organisms	46.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.96 %
cellular organisms	root	All Organisms → cellular organisms	46.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.96 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	45.32 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.96 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	15.11 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	2.16 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.96 %
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	13.67 %
Stenosarchaea group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group	1.44 %
Candidatus Korarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota	0.72 %
Archaeoglobi	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Archaeoglobi	0.72 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.96 %
Nitrososphaeria	class	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria	10.79 %
Nitrosopumilales	order	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales	2.16 %
Halobacteria	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	1.44 %
Archaeoglobales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Archaeoglobi → Archaeoglobales	0.72 %
Candidatus Methanodesulfokores	genus	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Methanodesulfokores	0.72 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.96 %
Nitrososphaerales	order	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales	10.79 %
unclassified Nitrosopumilales	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales	2.16 %
Haloferacales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales	1.44 %
Candidatus Methanodesulfokores washburnensis	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Methanodesulfokores → Candidatus Methanodesulfokores washburnensis	0.72 %
Archaeoglobaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Archaeoglobi → Archaeoglobales → Archaeoglobaceae	0.72 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.96 %
Nitrososphaeraceae	family	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	10.79 %
Nitrosopumilales archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	2.16 %
Haloferacaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Haloferacaceae	1.44 %
Archaeoglobus	genus	All Organisms → cellular organisms → Archaea → Euryarchaeota → Archaeoglobi → Archaeoglobales → Archaeoglobaceae → Archaeoglobus	0.72 %
Candidatus Methanodesulfokores washburnensis	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Methanodesulfokores → Candidatus Methanodesulfokores washburnensis	0.72 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.96 %
Nitrososphaera	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera	7.91 %
Nitrosopumilales archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	2.16 %
unclassified Nitrososphaeraceae	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae	1.44 %
Haloferax	genus	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Haloferacaceae → Haloferax	1.44 %
Archaeoglobus veneficus	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Archaeoglobi → Archaeoglobales → Archaeoglobaceae → Archaeoglobus → Archaeoglobus veneficus	0.72 %
Candidatus Methanodesulfokores washburnensis	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Methanodesulfokores → Candidatus Methanodesulfokores washburnensis	0.72 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.96 %
Candidatus Nitrososphaera evergladensis	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	4.32 %
Nitrosopumilales archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	2.16 %
Nitrososphaeraceae archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	1.44 %
Haloferax sulfurifontis	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Haloferacaceae → Haloferax → Haloferax sulfurifontis	1.44 %
Candidatus Nitrososphaera gargensis	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera gargensis	0.72 %
Archaeoglobus veneficus	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Archaeoglobi → Archaeoglobales → Archaeoglobaceae → Archaeoglobus → Archaeoglobus veneficus	0.72 %
Candidatus Methanodesulfokores washburnensis	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Methanodesulfokores → Candidatus Methanodesulfokores washburnensis	0.72 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918013\|NODE_559900_length_1721_cov_6.862289	All Organisms → cellular organisms → Archaea	1753	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c2232310	Not Available	1198	Open in IMG/M
3300000156\|NODE_c0722601	All Organisms → cellular organisms → Archaea	6175	Open in IMG/M
3300000559\|F14TC_101278752	Not Available	503	Open in IMG/M
3300000858\|JGI10213J12805_10049683	All Organisms → cellular organisms → Archaea	3218	Open in IMG/M
3300000858\|JGI10213J12805_10646171	Not Available	721	Open in IMG/M
3300001213\|JGIcombinedJ13530_104217274	Not Available	951	Open in IMG/M
3300002568\|C688J35102_119807807	All Organisms → cellular organisms → Archaea	781	Open in IMG/M
3300004114\|Ga0062593_100282081	All Organisms → cellular organisms → Archaea	1400	Open in IMG/M
3300004156\|Ga0062589_100271643	All Organisms → cellular organisms → Archaea	1288	Open in IMG/M
3300004156\|Ga0062589_102553006	All Organisms → cellular organisms → Archaea → Euryarchaeota → Archaeoglobi → Archaeoglobales → Archaeoglobaceae → Archaeoglobus → Archaeoglobus veneficus	529	Open in IMG/M
3300004157\|Ga0062590_100428465	All Organisms → cellular organisms → Bacteria	1097	Open in IMG/M
3300004157\|Ga0062590_100990466	Not Available	798	Open in IMG/M
3300004479\|Ga0062595_101533926	All Organisms → cellular organisms → Archaea	617	Open in IMG/M
3300004479\|Ga0062595_102317266	Not Available	530	Open in IMG/M
3300004480\|Ga0062592_100625093	All Organisms → cellular organisms → Archaea	921	Open in IMG/M
3300004643\|Ga0062591_100721784	Not Available	905	Open in IMG/M
3300004643\|Ga0062591_101097303	All Organisms → cellular organisms → Archaea	766	Open in IMG/M
3300004643\|Ga0062591_101467880	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Haloferacaceae → Haloferax → Haloferax sulfurifontis	680	Open in IMG/M
3300005172\|Ga0066683_10142515	Not Available	1469	Open in IMG/M
3300005332\|Ga0066388_100578509	Not Available	1749	Open in IMG/M
3300005332\|Ga0066388_103166935	Not Available	841	Open in IMG/M
3300005434\|Ga0070709_10078741	All Organisms → cellular organisms → Archaea	2145	Open in IMG/M
3300005434\|Ga0070709_10266653	All Organisms → cellular organisms → Archaea	1239	Open in IMG/M
3300005437\|Ga0070710_10192757	All Organisms → cellular organisms → Archaea	1283	Open in IMG/M
3300005545\|Ga0070695_101615414	All Organisms → cellular organisms → Archaea	541	Open in IMG/M
3300005558\|Ga0066698_10946416	Not Available	549	Open in IMG/M
3300005562\|Ga0058697_10498451	Not Available	621	Open in IMG/M
3300005578\|Ga0068854_100599506	Not Available	940	Open in IMG/M
3300006755\|Ga0079222_10162922	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera	1287	Open in IMG/M
3300006755\|Ga0079222_10716474	Not Available	796	Open in IMG/M
3300006845\|Ga0075421_100034771	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	6378	Open in IMG/M
3300006845\|Ga0075421_100237504	All Organisms → cellular organisms → Archaea	2239	Open in IMG/M
3300006845\|Ga0075421_100245994	All Organisms → cellular organisms → Archaea	2195	Open in IMG/M
3300006845\|Ga0075421_100350745	Not Available	1783	Open in IMG/M
3300006847\|Ga0075431_100738186	Not Available	960	Open in IMG/M
3300006847\|Ga0075431_100974218	Not Available	816	Open in IMG/M
3300006854\|Ga0075425_101565171	Not Available	743	Open in IMG/M
3300006871\|Ga0075434_100049212	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	4184	Open in IMG/M
3300006969\|Ga0075419_11383326	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Haloferacaceae → Haloferax → Haloferax sulfurifontis	525	Open in IMG/M
3300007076\|Ga0075435_101144265	Not Available	680	Open in IMG/M
3300009011\|Ga0105251_10577133	Not Available	532	Open in IMG/M
3300009081\|Ga0105098_10038859	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera	1900	Open in IMG/M
3300009146\|Ga0105091_10410418	Not Available	676	Open in IMG/M
3300009147\|Ga0114129_10163890	All Organisms → cellular organisms → Archaea	3035	Open in IMG/M
3300009147\|Ga0114129_11405122	Not Available	861	Open in IMG/M
3300009157\|Ga0105092_10307915	Not Available	894	Open in IMG/M
3300009176\|Ga0105242_10905502	Not Available	882	Open in IMG/M
3300009789\|Ga0126307_10406709	Not Available	1097	Open in IMG/M
3300009789\|Ga0126307_10631403	Not Available	865	Open in IMG/M
3300009789\|Ga0126307_11093770	Not Available	645	Open in IMG/M
3300009789\|Ga0126307_11144724	Not Available	629	Open in IMG/M
3300009801\|Ga0105056_1044212	Not Available	610	Open in IMG/M
3300009818\|Ga0105072_1103904	Not Available	572	Open in IMG/M
3300009840\|Ga0126313_10000287	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	23420	Open in IMG/M
3300010029\|Ga0105074_1025660	Not Available	990	Open in IMG/M
3300010036\|Ga0126305_10084429	Not Available	1877	Open in IMG/M
3300010036\|Ga0126305_10441430	Not Available	862	Open in IMG/M
3300010038\|Ga0126315_10177597	All Organisms → cellular organisms → Archaea	1273	Open in IMG/M
3300010038\|Ga0126315_10336034	Not Available	938	Open in IMG/M
3300010038\|Ga0126315_10905478	Not Available	586	Open in IMG/M
3300010039\|Ga0126309_10076700	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	1668	Open in IMG/M
3300010039\|Ga0126309_10670519	Not Available	662	Open in IMG/M
3300010040\|Ga0126308_10054716	All Organisms → cellular organisms → Archaea	2329	Open in IMG/M
3300010040\|Ga0126308_10535248	Not Available	794	Open in IMG/M
3300010040\|Ga0126308_10550775	All Organisms → cellular organisms → Archaea	783	Open in IMG/M
3300010041\|Ga0126312_10001290	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	16374	Open in IMG/M
3300010041\|Ga0126312_10123537	All Organisms → cellular organisms → Archaea	1783	Open in IMG/M
3300010041\|Ga0126312_10722080	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera	720	Open in IMG/M
3300010042\|Ga0126314_10002296	All Organisms → cellular organisms → Archaea	9535	Open in IMG/M
3300010042\|Ga0126314_10101628	All Organisms → cellular organisms → Archaea → TACK group	1954	Open in IMG/M
3300010043\|Ga0126380_11490011	Not Available	599	Open in IMG/M
3300010044\|Ga0126310_10041790	All Organisms → cellular organisms → Archaea	2490	Open in IMG/M
3300010152\|Ga0126318_10765718	All Organisms → cellular organisms → Archaea	789	Open in IMG/M
3300010373\|Ga0134128_12648965	All Organisms → cellular organisms → Archaea	553	Open in IMG/M
3300010398\|Ga0126383_11347415	Not Available	804	Open in IMG/M
3300010401\|Ga0134121_12407089	All Organisms → cellular organisms → Archaea	567	Open in IMG/M
3300012212\|Ga0150985_121630951	Not Available	732	Open in IMG/M
3300012684\|Ga0136614_10322965	Not Available	1141	Open in IMG/M
3300012885\|Ga0157287_1064465	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Methanodesulfokores → Candidatus Methanodesulfokores washburnensis	609	Open in IMG/M
3300012897\|Ga0157285_10278337	Not Available	560	Open in IMG/M
3300012914\|Ga0157297_10130978	Not Available	794	Open in IMG/M
3300012948\|Ga0126375_10390526	Not Available	1002	Open in IMG/M
3300012955\|Ga0164298_10016222	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	3063	Open in IMG/M
3300012957\|Ga0164303_10136678	Not Available	1276	Open in IMG/M
3300012958\|Ga0164299_10102357	Not Available	1491	Open in IMG/M
3300012986\|Ga0164304_11002478	Not Available	661	Open in IMG/M
3300012986\|Ga0164304_11113898	Not Available	632	Open in IMG/M
3300012989\|Ga0164305_10280143	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	1221	Open in IMG/M
3300014488\|Ga0182001_10021512	All Organisms → cellular organisms → Archaea	1514	Open in IMG/M
3300014497\|Ga0182008_10111247	Not Available	1357	Open in IMG/M
3300014497\|Ga0182008_10147209	Not Available	1180	Open in IMG/M
3300014497\|Ga0182008_10834896	Not Available	537	Open in IMG/M
3300015201\|Ga0173478_10679980	Not Available	547	Open in IMG/M
3300015265\|Ga0182005_1122453	Not Available	741	Open in IMG/M
3300015371\|Ga0132258_10776675	Not Available	2414	Open in IMG/M
3300018027\|Ga0184605_10064705	All Organisms → cellular organisms → Archaea	1574	Open in IMG/M
3300018071\|Ga0184618_10365683	Not Available	613	Open in IMG/M
3300018432\|Ga0190275_10083777	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	2776	Open in IMG/M
3300018432\|Ga0190275_11045928	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	889	Open in IMG/M
3300018466\|Ga0190268_10144658	Not Available	1202	Open in IMG/M
3300018466\|Ga0190268_11186179	Not Available	631	Open in IMG/M
3300018469\|Ga0190270_10146349	Not Available	1910	Open in IMG/M
3300018481\|Ga0190271_11165823	All Organisms → cellular organisms → Archaea	893	Open in IMG/M
3300018481\|Ga0190271_11613897	Not Available	764	Open in IMG/M
3300019356\|Ga0173481_10000609	All Organisms → cellular organisms → Archaea	7899	Open in IMG/M
3300019356\|Ga0173481_10194386	Not Available	874	Open in IMG/M
3300019377\|Ga0190264_11820025	Not Available	549	Open in IMG/M
3300019877\|Ga0193722_1038000	All Organisms → cellular organisms → Archaea	1237	Open in IMG/M
3300021344\|Ga0193719_10093620	Not Available	1306	Open in IMG/M
3300021362\|Ga0213882_10095794	All Organisms → cellular organisms → Archaea	1200	Open in IMG/M
3300021413\|Ga0193750_1025157	Not Available	1391	Open in IMG/M
3300021445\|Ga0182009_10013599	All Organisms → cellular organisms → Archaea	2902	Open in IMG/M
3300021972\|Ga0193737_1040230	Not Available	671	Open in IMG/M
3300025915\|Ga0207693_10090000	All Organisms → cellular organisms → Archaea	2405	Open in IMG/M
3300025939\|Ga0207665_10006437	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	7791	Open in IMG/M
3300025981\|Ga0207640_10705071	Not Available	866	Open in IMG/M
3300027717\|Ga0209998_10185833	Not Available	541	Open in IMG/M
3300027765\|Ga0209073_10008846	All Organisms → cellular organisms → Archaea	2649	Open in IMG/M
3300027775\|Ga0209177_10265973	Not Available	640	Open in IMG/M
3300027775\|Ga0209177_10391191	Not Available	555	Open in IMG/M
3300027909\|Ga0209382_10211092	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	2221	Open in IMG/M
3300027909\|Ga0209382_10332546	Not Available	1706	Open in IMG/M
3300027909\|Ga0209382_10453964	All Organisms → cellular organisms → Archaea	1419	Open in IMG/M
3300027956\|Ga0209820_1042916	All Organisms → cellular organisms → Archaea	1190	Open in IMG/M
3300028744\|Ga0307318_10371869	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	505	Open in IMG/M
3300028876\|Ga0307286_10334936	All Organisms → cellular organisms → Archaea	562	Open in IMG/M
3300030511\|Ga0268241_10033721	Not Available	1051	Open in IMG/M
3300030511\|Ga0268241_10047154	Not Available	916	Open in IMG/M
3300031058\|Ga0308189_10230951	All Organisms → cellular organisms → Archaea	688	Open in IMG/M
3300031847\|Ga0310907_10877437	Not Available	506	Open in IMG/M
3300031938\|Ga0308175_100190033	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	2012	Open in IMG/M
3300031996\|Ga0308176_11111485	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera gargensis	836	Open in IMG/M
3300032002\|Ga0307416_102854965	Not Available	578	Open in IMG/M
3300032013\|Ga0310906_10221301	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	1163	Open in IMG/M
3300032075\|Ga0310890_10789927	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera	751	Open in IMG/M
3300033433\|Ga0326726_11773903	Not Available	601	Open in IMG/M
3300034690\|Ga0364923_0076680	All Organisms → cellular organisms → Archaea	818	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	79.14%
Host-Associated	Host-Associated	20.14%
Engineered	Engineered	0.72%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.66%
Plants	Host-Associated → Plants	20.14%
Aquatic	Environmental → Aquatic	6.47%
Solid Waste	Engineered → Solid Waste	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	70.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.83%
Freshwater	Environmental → Aquatic → Freshwater	4.32%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.60%
Sediment	Environmental → Aquatic → Sediment	1.44%
Marine	Environmental → Aquatic → Marine	0.72%
Peat	Environmental → Terrestrial → Peat	0.72%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.72%
Floodplain	Environmental → Terrestrial → Floodplain	0.72%
Phylloplane	Host-Associated → Plants → Phylloplane	0.72%
Grass	Engineered → Solid Waste → Grass	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	61.15%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.83%
Loam	Environmental → Terrestrial → Soil → Loam	7.19%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.88%
Sand	Environmental → Terrestrial → Soil → Sand	2.16%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.16%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.44%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.44%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.72%
Ice	Environmental → Aquatic → Freshwater → Ice	0.72%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.72%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.72%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.72%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.72%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	0.72%
Composting	Engineered → Solid Waste → Grass → Composting	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	41.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	11.51%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.32%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.32%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.60%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.88%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.16%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.16%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.44%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.44%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.44%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.44%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.72%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.72%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.72%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.72%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.72%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.72%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	0.72%
Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	20.14%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	15.11%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	7.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.32%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.32%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.60%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.16%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	2.16%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.44%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.44%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.44%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.44%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.44%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.72%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.72%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.72%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.72%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.72%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.72%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.72%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.72%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.72%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.72%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	0.72%
Sugar Cane Bagasse Incubating Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918013	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000156	Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobic	Engineered	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009801	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_20_30	Environmental	Open in IMG/M
3300009818	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010029	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_10_20	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010152	Soil microbial communities from Oklahoma, USA to study soil gas exchange rates - GP-OK-ARM metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012684	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ279 (21.06)	Environmental	Open in IMG/M
3300012885	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014488	Bulk soil microbial communities from Mexico - San Felipe (SF) metaG	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015265	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019877	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021362	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R09	Environmental	Open in IMG/M
3300021413	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300021972	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2m2	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027717	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300027956	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300030511	Bulk soil microbial communities from Mexico - Amatitan (Am) metaG (v2)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300034690	Sediment microbial communities from East River floodplain, Colorado, United States - 60_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Iowa-Corn-GraphCirc_02495010	2140918013	Soil	LYKVEAKSVTGKPTYRHSIFLEKAFVEDSLFPFKAGENLIARIESGKLVITKAD
ICChiseqgaiiDRAFT_22323101	3300000033	Soil	VYTYICPFRDIRVASYTRTKLYKVEAKSVTGKPTYRHSIFLEKAFVEDSLFPFKAGENLIARIESGKLVITKAD*
NODE_072260113	3300000156	Sugar Cane Bagasse Incubating Bioreactor	MALQSKTKLYKVESKSAKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLVVKIDKNRLIITKLEHE*
F14TC_1012787521	3300000559	Soil	VKRSIVVSHTRTKLYKVESKSTTTGNNTYRHSIFLEKAFVEDSLFPFKAGDNLILKIKSDKVVIAKENNTF*
JGI10213J12805_100496833	3300000858	Soil	LYKVESTSSATGKKTYRHSIFLEKAFVEDSLFPFKPGDDLIVKIEADRLIITKAE*
JGI10213J12805_106461712	3300000858	Soil	MASHTRTKLYKVEAKSVTGKSTYRHSIFLEKAFVEDSLFPFKAGENLIARIENDKLIITKAD*
JGIcombinedJ13530_1042172742	3300001213	Wetland	TKTKLYKVGSKSPKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLVVKIDKDKLVITRPKD
C688J35102_1198078071	3300002568	Soil	MASQTRTKLYKVESKSSKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLSVRIDEDRLIVTRVKD*
Ga0062593_1002820812	3300004114	Soil	MASQTRTKLYKVESKSAKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLIVRIDRDRLIVTKFKDQS*
Ga0062589_1002716432	3300004156	Soil	VASYTRTKLYKVEAKSVTGKPTYRHSIFLEKAFVEDSLFPFKAGENLIARIESGKLVITK
Ga0062589_1025530061	3300004156	Soil	PIYLSNSNMASQTKTKLYKVGSKSPKTGVKTYRHSIFLEKAFVEDSLFPFKPGENLVVKIDKDKLVITRPKD*
Ga0062590_1004284654	3300004157	Soil	VVSHTRTKLYKVESKSTTTGNNTYRHSIFLEKAFVEDSLFPFKAGDNLILKIKSDKVVIAKENNTF*
Ga0062590_1009904662	3300004157	Soil	MASQTKTKLYKVESKSAKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLIVRIDKDKLIITKLKD*
Ga0062595_1015339261	3300004479	Soil	MASQTKTKLYKVESKSAKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLIVKIDKDRLIISKFKP*
Ga0062595_1023172661	3300004479	Soil	MALQSKTKLYKVESKSAKTGVKTYRHSIFLEKAFVEDSSFPFKAGENLIVKIDKDRLIITKLEH*
Ga0062592_1006250931	3300004480	Soil	VASYTRTKLYKVEAKSVTGKPTYRHSIFLEKAFVEDSLFPFKAGENLIARIESGKLVITKAD*
Ga0062591_1007217843	3300004643	Soil	VVSHTRTKLYKVESKSTTTGNNTYRHSIFLEKAFVEDSLFPFKAGDNLILKIKSDKVVISKENNTF*
Ga0062591_1010973032	3300004643	Soil	VASYTRTKLYKVEAKSVTGKPTYRHSIFLEKAFVEDSLFPFKAGENLIARIESGK
Ga0062591_1014678801	3300004643	Soil	LYKVEAKSVTGKPTYRHSIFLEKAFVEDSLFPFKAGENLIARIESGKLVITKAD*
Ga0066683_101425153	3300005172	Soil	MVYQTKTKLYKVESESAKTGVKTYRHSIFLEKGFVEDSLFPFKAGDKLIVKIDKDRLIVSKTKD*
Ga0066388_1005785093	3300005332	Tropical Forest Soil	MYRSQISLEINLASQTKTKLYKVESKSPKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLLVRIEKDRLIITRP*
Ga0066388_1031669351	3300005332	Tropical Forest Soil	MYILICIGLKLSLKINLASQTKTKLYKVESKSPKTGVKTCRHSIFLEKAFVEDSLFPFKAGDNLLVRIDKDRLVITKP*
Ga0070709_100787415	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	SQTRTKLYKVESKSSKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLSVRIDEDRLIVTRIKD*
Ga0070709_102666531	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MAPQTRTKLYKVESKSSKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLIVKIDKDRIIVTKLKD*
Ga0070710_101927572	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MASQTRTKLYKVESKSSKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLSVRIDEDRLIVTRIKD*
Ga0070695_1016154141	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	YKVESKSSKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLSVRIDEDRLIVTRVKD*
Ga0066698_109464161	3300005558	Soil	MVYQTKTKLYKVESESAKTGVKTYRHSIFLEKGFVEDSLFPFKAGDKLIVKIDKDRLIV
Ga0058697_104984511	3300005562	Agave	MASHTRTKLYKVEAKSVTGKSTYRHSIFLEKAFVEDSLFPFKAGENLIARIENDKLIITRAD*
Ga0068854_1005995061	3300005578	Corn Rhizosphere	YKVGSKSPKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLVVKIDKDKLVITRPKD*
Ga0079222_101629223	3300006755	Agricultural Soil	MASQTRTKLYKVESKSSKTGVKTYRHSILLEKAFVEDSLFPFKAGDNLSVRIDEDRLIVTRVKD*
Ga0079222_107164742	3300006755	Agricultural Soil	MASQTRTKLYKVESKSAKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLIVRIDKDRLIVTKLKE*
Ga0075421_1000347719	3300006845	Populus Rhizosphere	MASQTKTKLYKVESKSAKTGVKTYRHSIFLEKGFVEDSLFPFKAGENLIVRIDKDRLIITKFKP*
Ga0075421_1002375044	3300006845	Populus Rhizosphere	MASQTKTKLYKVESKSAKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLIVRIDKDRLIITKFRP*
Ga0075421_1002459943	3300006845	Populus Rhizosphere	MGDVIVVSQTRTKLYKVESKSTAGKPTFRHSIFLEKAFVEDSLFPFKPGENLIAKIDNNTLVIMKATD*
Ga0075421_1003507455	3300006845	Populus Rhizosphere	MYILICICLQGVIGMASQTKTKLYKVESKSAKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLIVRIDKDRLIITKYKP*
Ga0075431_1007381862	3300006847	Populus Rhizosphere	MASQTKTKLYKVESRSAKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLIVRIDKDRLIITKHKP*
Ga0075431_1009742181	3300006847	Populus Rhizosphere	TKLYKVESKSAKTGVKTYRHSIFLEKGFVEDSLFPFKAGENLIVRIDKDRLIITKFKP*
Ga0075425_1015651711	3300006854	Populus Rhizosphere	KTKLYKVGSKSPKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLVVKIDKDKLVITRPKD*
Ga0075434_1000492125	3300006871	Populus Rhizosphere	MASQTRTKLYKVESKSSKTGVKTYRHSIFLEKAFVEDSLFPFKAGDNLSVRIDEDRLIVTRVKD*
Ga0075419_113833261	3300006969	Populus Rhizosphere	VASYTRTKLYKVEAKSVTGKPTNRHSIFLEKAFVEDSLFPFKAGENLIARIESGKLVITKAE*
Ga0075435_1011442652	3300007076	Populus Rhizosphere	IYLSNSNMASQTKTKLYKVGSKSPKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLVVKIDKDKLVITRPKD*
Ga0105251_105771332	3300009011	Switchgrass Rhizosphere	MASQTKTKLYKVGSKSPKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLVVKIDKDKLVITRPKD*
Ga0105098_100388591	3300009081	Freshwater Sediment	MGDVIVVSHTRTKLYKVESKSTAGKPTFRHSIFLEKAFVEDSLFPFKPGENLIAKIDNNTLVIMKATD*
Ga0105091_104104181	3300009146	Freshwater Sediment	KVYTYICPFRDIRVASYTRTKLYKVEAKSVTGKPTYRHSIFLEKAFVEDSLFPFKAGENLIARIESGKLVITKAD*
Ga0114129_101638903	3300009147	Populus Rhizosphere	MASQTKTKLYKVESESAKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLIVKIDKDRLIISKFKP*
Ga0114129_114051222	3300009147	Populus Rhizosphere	MYILICICLQGVIGMALQTKTKLYKVESKSAKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLIVRIDKDRLIITKYKP*
Ga0105092_103079152	3300009157	Freshwater Sediment	LYKVEAKSVTGKPTYRQSIFLEKAFVEDSLFPFKAGENLIARIESGKLVITKAD*
Ga0105242_109055021	3300009176	Miscanthus Rhizosphere	MVYQTKTKLYKVESESVKTGVKTYRHSIFLEKGFVEDSLFPFKAGDKLIVKIDKDRLI
Ga0126307_104067092	3300009789	Serpentine Soil	MSRRYLVVARTRTKLYKVGSKSTSTGNNTYRHSIFLEKAFVEDSLFPFKAGENLIAKIEADKLVITKKMD*
Ga0126307_106314031	3300009789	Serpentine Soil	TRTKLYKVGSKSTSTGNNTYRHSIFLEKAFVEDSLFPFKAGENLIAKIEADKLVITKKID
Ga0126307_110937701	3300009789	Serpentine Soil	LYKVEAKSVSGKSTYRHSIFLEKAFVEDSLFPFKAGENLIARIEKDRLIITKAD*
Ga0126307_111447241	3300009789	Serpentine Soil	KLYKVGSKSTSTGNNTYRHSIFLEKAFVEDSLFPFKAGENLIAKIEADKLVITKKMD*
Ga0105056_10442121	3300009801	Groundwater Sand	WEDVIVVSHTRTKLYKVESKSTAGKPTFRHSIFLEKAFVEDSLFPFKPGESLIAKIDNNTLIIMKATD*
Ga0105072_11039041	3300009818	Groundwater Sand	MGEAIVVSHTRTKLYKVESKSAAGKPTFRHSIFLEKAFVEDSLFPFKPGENLIAKIDNNTLIIMKATD*
Ga0126313_1000028721	3300009840	Serpentine Soil	VESKSTTTGRPTYRHTIFLEKAFVEDSSFPFKPGDNLMVRIDKDRLIITKAEGSVTTNDM
Ga0105074_10256601	3300010029	Groundwater Sand	HTRTKLYKVESKSAAGKPTFRHSIFLEKAFVEDSLFPFKPGENLIAKIDNNTLIIMKATD
Ga0126305_100844292	3300010036	Serpentine Soil	VVACTRTKLYKVGSKSTSTGNNTYRHSIFLEKAFVEDSLFPFKAGENLIAKIEADKLVITKKMD*
Ga0126305_104414301	3300010036	Serpentine Soil	MASHTRTKLYKVEAKSVSGKSTYRHSIFLEKAFVEDSLFPFKAGENLIARIEKDRLIITKAD*
Ga0126315_101775971	3300010038	Serpentine Soil	MASQTKTKLYKVESKSAKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLIVKIDKDRLIITKLKP*
Ga0126315_103360341	3300010038	Serpentine Soil	MYILIKHISRKYLVVARTRTKLYKVGSKSTSTGNNTYRHSIFLEKAFVEDSLFPFKAGENLIAKIEADKLVITKKMD*
Ga0126315_109054782	3300010038	Serpentine Soil	VESKSTTTGRLTYRHTIFLEKAFVEDSLFPFKPGDNLIVKIDGDKLVITRAIN*
Ga0126309_100767005	3300010039	Serpentine Soil	VVSHTRTKLYKVESKSTTTGNNTYRHSIFLEKAFVEDSLFPFKAGDNLILKIESDKVIIGKENSTF*
Ga0126309_106705191	3300010039	Serpentine Soil	MSRRYLVVARTRTKLYKVGSKSTSTGNNTYRHSIFLEKAFVEDSLFPFKAGENLIAKIEADKLVITKK
Ga0126308_100547162	3300010040	Serpentine Soil	MYILIKHISRKYLVVARTRTKLYKVGSKSTSTGNNTYRHSIFLEKAFVEDSLFPFKAGENLIAKIEADKLVITKKID*
Ga0126308_105352481	3300010040	Serpentine Soil	ISRKYLVVARTRTKLYKVGSKSTSTGNNTYRHSIFLEKAFVEDSLFPFKAGENLIAKIEADKLVITKKMD*
Ga0126308_105507751	3300010040	Serpentine Soil	MASQTKTKLYKVEAKSAKTGVKTYRHSIFLEKAFVEDSLFPFKPGENLIVRIDKDRLIITKL
Ga0126312_100012906	3300010041	Serpentine Soil	VESKSTTTGRPTYRHTIFLEKAFVEDSSFPFKPGDNLMVRIDKDRLIITKAEGSVTTNDT
Ga0126312_101235373	3300010041	Serpentine Soil	MSRRYLVVARTRTKLYKVGSKSTSTGNNTYRHSIFLEKAFVEDSLFPFKAGENLIAKIEADKLVITKKID*
Ga0126312_107220801	3300010041	Serpentine Soil	VESKSTTTGRLTYRHTIFLEKAFVEDSLFPFKPGDNLIVKIDGDKL
Ga0126314_100022964	3300010042	Serpentine Soil	MALQSKTKLYKVESKSAKTGVKTYRHSIFLEKAFVEDSSFPFKPGQNLIVKIDKDRLIITKLEP*
Ga0126314_101016283	3300010042	Serpentine Soil	VVARTRTKLYKVGSKSTSTGNNTYRHSIFLEKAFVEDSLFPFKAGENLIAKIEADKLVITKKID*
Ga0126380_114900111	3300010043	Tropical Forest Soil	MTSHTKTKLYKVGSKSAKTGVKTYRHSIFLEKAFVEDSLFPFKPGENLTVKIDKNRLIITKFKD*
Ga0126310_100417904	3300010044	Serpentine Soil	MYILIKHMSRRYLVVARTRTKLYKVGSKSTSTGNNTYRHSIFLEKAFVEDSLFPFKAGENLIAKIEADKLVITKKID*
Ga0126318_107657181	3300010152	Soil	QTRTKLYKVESKSSKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLSVRIDEDRLIVTRIKD*
Ga0134128_126489651	3300010373	Terrestrial Soil	QSEMASQTRTKLYKVESKSSKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLSVRIDEDRLIVTRVKD*
Ga0126383_113474152	3300010398	Tropical Forest Soil	MASQTKTKLYKVESKSPKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLIVRIDKDRLIITRPKTESP*
Ga0134121_124070891	3300010401	Terrestrial Soil	KVESKSSKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLSVRIDEDRLIVTRVKD*
Ga0150985_1216309511	3300012212	Avena Fatua Rhizosphere	LPISQTRTKLYKVGSKSPKTGVKTYRHSIFLEKAFVEDSQFPFKAGENLVVKIDKDKLVITRPKD*
Ga0136614_103229651	3300012684	Polar Desert Sand	SIYIYSIEAAVYIVVAHTRTKLYKVESKSMATGNNTYRHSIFLEKAFVEDSSFPFRAGESLIAKIEADKLVIAKKID*
Ga0157287_10644653	3300012885	Soil	MASQTKTKLYKVESKSAKTGVKTYRHSIFLEKAFVEDSLFPFKPGENLIVRIDKDR
Ga0157285_102783371	3300012897	Soil	MASQTKTKLYKVGSKSPKTGVKTYRHSIFLEKAFVEDSLFPFKPGENLVVKIDKDKLVITRPKD*
Ga0157297_101309783	3300012914	Soil	MASQTKTKLYKVESKSAKTGVKTYRHSIFLEKAFVEDSLFLFKPGENLIVRWIKID*
Ga0126375_103905261	3300012948	Tropical Forest Soil	MASQTKTKLYKVESKSPKTGVKTYRHSIFLEKAFVEDSLFPFKPGENLTVKIDKNRLIITKFKD*
Ga0164298_100162224	3300012955	Soil	MASQTRTKLYKVESKSSKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLSVRIDENRLIVTRIKD*
Ga0164303_101366782	3300012957	Soil	MYPPPIYLSNSNMASQTKTKLYKVGSKSPKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLVVKIDK
Ga0164299_101023571	3300012958	Soil	MASQTKTKLYKVGSKSPKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLVVKIDK
Ga0164309_102250951	3300012984	Soil	MYPPPIYLSNSNMASQTKTKLYKVGSKSPKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLVVKIDKDKLVITR
Ga0164304_110024782	3300012986	Soil	MASQTKTKLYKVGSKSPKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLLVRIDKDRLVITRPKD*
Ga0164304_111138982	3300012986	Soil	MASQTRTKLYKVESKSSKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLTVRIDEDRLIVTRVKD*
Ga0164305_102801431	3300012989	Soil	KVESKSPKTGVTTYRHSIFLEKAFVEDSSFPFKPSENLKVSIDKDRLIVTRFKE*
Ga0182001_100215121	3300014488	Soil	NMASQTKTKLYKVESKSAKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLIVKIDKDRLIITKFKS*
Ga0182008_101112473	3300014497	Rhizosphere	SQTKTKLYKVESRSAKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLIVKIDKDRLIITKFKP*
Ga0182008_101472092	3300014497	Rhizosphere	MALQSKTKLYKVESKSAKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLIVKIDKDRLIITKLEH*
Ga0182008_108348961	3300014497	Rhizosphere	VESKSAKTGVKTYRHSIFLEKAFVEDSLFPFKPGENLIVRMDKDRLIVTKLKD*
Ga0173478_106799802	3300015201	Soil	QTKTKLYKVESKSAKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLIVRIDKDKLIITKLKD*
Ga0182005_11224531	3300015265	Rhizosphere	MASQTKTKLYKVESRSAKTGVKTYRHSIFLEKAFVEDSLFPFIAGENLIVKIDKDRLIITKFKP*
Ga0132258_107766752	3300015371	Arabidopsis Rhizosphere	LASQTKTKLYKVESKSPKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLLVRIEKDRLIITRP*
Ga0184605_100647052	3300018027	Groundwater Sediment	MVYQTKTKLYKVESESAKTGVKTYRHSIFLEKGFVEDSLFPFKAGDKLIVKIDKDRLIVSKTKD
Ga0184618_103656831	3300018071	Groundwater Sediment	MVYQTKTKLYKVESESAKTGVKTYRHSIFLEKGFVEDSLFPFKAGDKLIVKIDKD
Ga0190275_100837771	3300018432	Soil	VASYTRTKLYKVEAKSVTGKPTYRHSIFLEKAFVEDSLFPFKAGENLIARIESGKLVITKAD
Ga0190275_110459282	3300018432	Soil	VVSHTRTKLYKVESKSTTTGNNTYRHSIFLEKAFVEDSLFPFKAGDNLILNIESDKVVIAKENSVSR
Ga0190268_101446583	3300018466	Soil	VVSHTRTKLYKVESKSTTTGNNTYRHSIFLEKAFVEDSLFPFKAGDNLILKIKSDKVVIAKENNTF
Ga0190268_111861791	3300018466	Soil	MASHTRTKLYKVEAKSVTGKSTYRHSIFLEKAFVEDSLFPFKAGENLIARIENDKLIITK
Ga0190270_101463492	3300018469	Soil	VVSHTRTKLYKVESKSTTTGNNTYRHSIFLEKAFVEDSLFPFKAGDNLILKIKSDKVVIAKENNTI
Ga0190271_111658232	3300018481	Soil	MASHTRTKLYKVEAKSGTGKPTYRHSIFLEKAFVEDSQFPFRAGENLIVRIENDKLIITKASN
Ga0190271_116138971	3300018481	Soil	VVSHTRTKLYKVESKSTTTGNNTYRHSIFLEKAFVEDSLFPFKAGDNLILKIRSDKVVIAKENNTF
Ga0173481_100006098	3300019356	Soil	MASQTKTKLYKVESKSAKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLIVRIDKDKLIITKLKD
Ga0173481_101943862	3300019356	Soil	MASQTRTKLYKVESKSAKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLIVRIDRDRLIVTKFKDQS
Ga0190264_118200252	3300019377	Soil	ASFTRTKLYKVEAKSVTGKPTYRHSIFLEKAFVEDSLFPFKAGENLIARIESGKLVITKA
Ga0193722_10380002	3300019877	Soil	MVYQTNTKLYKVESESAKTGVKTYRHSIFLEKGFVEDSLFPFKAGDKLIVKIDKDRLIVSKTKD
Ga0193719_100936203	3300021344	Soil	MVYQTNTKLYKVESESAKTGVKTYRHSIFLEKGFVEDSLFPFKAGDKLIVKIDKDRLIVS
Ga0213882_100957941	3300021362	Exposed Rock	MAAQTRTKLYKVESKSAKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLIVRIDKDRLIVTKFKDQS
Ga0193750_10251571	3300021413	Soil	MASQTRTKLYKVESKSSKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLIVKIDKDRIIVTKLKD
Ga0182009_100135994	3300021445	Soil	MASQTKTKLYKVESRSAKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLIVKIDKDRLIITKFKP
Ga0193737_10402301	3300021972	Soil	VVSHTRTKLYKVESKSTTTGNNTYRHSIFLEKAFVEDSLFPFKAGDNLILNIESDKVVIAKENNTF
Ga0207693_100900003	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MASQTRTKLYKVESKSSKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLNVRIDEDRLIVTRIKD
Ga0207665_100064377	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MASQTRTKLYKVESKSSKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLTVRIDEDRLIVTRVKD
Ga0207640_107050712	3300025981	Corn Rhizosphere	LYKVGSKSPKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLVVKIDKDKLVITRPKD
Ga0209998_101858331	3300027717	Arabidopsis Thaliana Rhizosphere	MASQTKTKLYKVESKSAKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLIARIESGKLVITKAD
Ga0209073_100088462	3300027765	Agricultural Soil	MASQTRTKLYKVESKSAKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLIVRIDKDRLIVTKLKE
Ga0209177_102659732	3300027775	Agricultural Soil	IYLYISILQLYISNMASQTRTKLYKVESKSAKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLIVRIDKDRLIVTKLKE
Ga0209177_103911911	3300027775	Agricultural Soil	MASQTRTKLYKVESKSSKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLIVRIDKDRLIVT
Ga0209382_102110922	3300027909	Populus Rhizosphere	MGDVIVVSQTRTKLYKVESKSTAGKPTFRHSIFLEKGFVEDSLFPFKPGENLIAKIDNNTLVIMKATD
Ga0209382_103325462	3300027909	Populus Rhizosphere	MASQTKTKLYKVESKSAKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLIVRIDKDRLIITKFRP
Ga0209382_104539641	3300027909	Populus Rhizosphere	MASQTKTKLYKVESKSAKTGVKTYRHSIFLEKGFVEDSLFPFKAGENLIVRIDKDRLIITKFKP
Ga0209820_10429161	3300027956	Freshwater Sediment	MGDVIVVSHTRTKLYKVESKSTAGKPTFRHSIFLEKAFVEDSLFPFKPGENLIAKIDNNTLVIMKATD
Ga0307318_103718692	3300028744	Soil	VVSHTRTKLYKVESKSTTTGNNTYRHSIFLEKAFVEDSLFPFKAGDNLILKIESDKVIIGKENSTF
Ga0307286_103349362	3300028876	Soil	TKTKLYKVESESAKTGVKTYRHSIFLEKGFVEDSLFPFKAGDKLIVKIDKDRLIVSKTKD
Ga0268241_100337212	3300030511	Soil	MYLSSRISIVIGMASQTKTKLYKVESKSAKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLIVRIDKDRLIITKFKP
Ga0268241_100471543	3300030511	Soil	MASQTKTKLYKVESKSAKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLTVKIDKDRLIITKFKP
Ga0308189_102309511	3300031058	Soil	QTKTKLYKVESESAKTGVKTYRHSIFLEKGFVEDSLFPFKAGDKLIVKIDKDRLIVSKTK
Ga0310907_108774371	3300031847	Soil	VVSHTRTKLYKVESKSTTTGNNTYRHSIFLEKAFVEDSLFPFKAGDNLILKIKSDKVVIAKEN
Ga0308175_1001900335	3300031938	Soil	MASQTKTKLYKVESKSAKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLIVRIDKDRLIITKFKD
Ga0308176_111114851	3300031996	Soil	MASQTKTKLYKVESKSAKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLIVRIDKDRLIITKSKD
Ga0307416_1028549652	3300032002	Rhizosphere	VESKSTTTGRLTYRHTIFLEKAFVEDSLFPFKPGDNLIVKIDGDKLVITRAIN
Ga0310906_102213014	3300032013	Soil	RSIVVSHTRTKLYKVESKSTTTGNNTYRHSIFLEKAFVEDSLFPFKAGDNLILKIKSDKVVIAKENNTF
Ga0310890_107899272	3300032075	Soil	VASYTRTKLYKVEAKSVTGKPTYRHSIFLEKAFVEDSLFPFKAGENLIARIENGKLVITKAD
Ga0326726_117739031	3300033433	Peat Soil	MASQTKTKLYKVESKSAKTGVKTYRHSIFLEKAFVEDSLFPFKAGENLIVTIDKDRLVITKLKD
Ga0364923_0076680_83_274	3300034690	Sediment	MVSHTRTKLYKVESKSTAGKPTFRHSIFLEKAFVEDSLFPFKPGENLIAKIDNNTLIIMKATD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F054769

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences