Metagenome Family F055312

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Overview

Basic Information
Family ID	F055312
Family Type	Metagenome
Number of Sequences	138
Average Sequence Length	59 residues
Representative Sequence	GTQKLLSRVTRGFYSPDSPLGSQKLLSRVTRGFDSPDGPLVSQKLLSRVTRGFGSPDSP
Number of Associated Samples	17
Number of Associated Scaffolds	137

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	12.37 %
% of genes near scaffold ends (potentially truncated)	58.70 %
% of genes from short scaffolds (< 2000 bps)	55.80 %
Associated GOLD sequencing projects	17
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.18

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (73.913 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem (73.913 % of family members)
Environment Ontology (ENVO)	Unclassified (99.275 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (97.826 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 22.99% β-sheet: 0.00% Coil/Unstructured: 77.01%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.18
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.18
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.91 %
All Organisms	root	All Organisms	26.09 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.91 %
Viruses	superkingdom	All Organisms → Viruses	26.09 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	26.09 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300006051\|Ga0075364_11006279	Not Available	566	Open in IMG/M
3300006051\|Ga0075364_11006279	Not Available	566	Open in IMG/M
3300006051\|Ga0075364_11234088	Not Available	506	Open in IMG/M
3300032354\|Ga0325403_1024804	Not Available	5252	Open in IMG/M
3300032354\|Ga0325403_1058041	All Organisms → Viruses → Predicted Viral	2496	Open in IMG/M
3300032354\|Ga0325403_1060052	All Organisms → Viruses → Predicted Viral	2400	Open in IMG/M
3300032354\|Ga0325403_1062322	All Organisms → Viruses → Predicted Viral	2301	Open in IMG/M
3300032354\|Ga0325403_1073917	All Organisms → Viruses → Predicted Viral	1855	Open in IMG/M
3300032354\|Ga0325403_1104675	All Organisms → Viruses → Predicted Viral	1102	Open in IMG/M
3300032354\|Ga0325403_1117468	Not Available	920	Open in IMG/M
3300032354\|Ga0325403_1139983	Not Available	709	Open in IMG/M
3300032354\|Ga0325403_1140031	Not Available	708	Open in IMG/M
3300032354\|Ga0325403_1152859	Not Available	610	Open in IMG/M
3300032354\|Ga0325403_1165842	Not Available	536	Open in IMG/M
3300032354\|Ga0325403_1166499	Not Available	532	Open in IMG/M
3300032355\|Ga0325401_1047922	All Organisms → Viruses → Predicted Viral	3323	Open in IMG/M
3300032355\|Ga0325401_1051041	All Organisms → Viruses → Predicted Viral	3152	Open in IMG/M
3300032355\|Ga0325401_1060425	All Organisms → Viruses → Predicted Viral	2701	Open in IMG/M
3300032355\|Ga0325401_1063869	All Organisms → Viruses → Predicted Viral	2561	Open in IMG/M
3300032355\|Ga0325401_1100507	Not Available	1558	Open in IMG/M
3300032355\|Ga0325401_1105826	Not Available	1463	Open in IMG/M
3300032355\|Ga0325401_1183356	Not Available	738	Open in IMG/M
3300032355\|Ga0325401_1190986	Not Available	700	Open in IMG/M
3300032355\|Ga0325401_1197356	Not Available	672	Open in IMG/M
3300032355\|Ga0325401_1223078	Not Available	578	Open in IMG/M
3300032355\|Ga0325401_1234596	Not Available	545	Open in IMG/M
3300032355\|Ga0325401_1249049	Not Available	509	Open in IMG/M
3300032374\|Ga0325400_1186169	Not Available	969	Open in IMG/M
3300032374\|Ga0325400_1198857	Not Available	902	Open in IMG/M
3300032374\|Ga0325400_1270243	Not Available	644	Open in IMG/M
3300032389\|Ga0325405_1033420	All Organisms → Viruses → Predicted Viral	3848	Open in IMG/M
3300032389\|Ga0325405_1036969	All Organisms → Viruses → Predicted Viral	3493	Open in IMG/M
3300032389\|Ga0325405_1040603	All Organisms → Viruses → Predicted Viral	3177	Open in IMG/M
3300032389\|Ga0325405_1078623	All Organisms → Viruses → Predicted Viral	1292	Open in IMG/M
3300032389\|Ga0325405_1088773	All Organisms → Viruses → Predicted Viral	1039	Open in IMG/M
3300032389\|Ga0325405_1093324	Not Available	953	Open in IMG/M
3300032389\|Ga0325405_1097654	Not Available	884	Open in IMG/M
3300032389\|Ga0325405_1117016	Not Available	640	Open in IMG/M
3300032389\|Ga0325405_1130731	Not Available	517	Open in IMG/M
3300032390\|Ga0325404_1029052	All Organisms → Viruses → Predicted Viral	4398	Open in IMG/M
3300032390\|Ga0325404_1061726	All Organisms → Viruses → Predicted Viral	1835	Open in IMG/M
3300032390\|Ga0325404_1072080	All Organisms → Viruses → Predicted Viral	1413	Open in IMG/M
3300032390\|Ga0325404_1083121	All Organisms → Viruses → Predicted Viral	1086	Open in IMG/M
3300032390\|Ga0325404_1103429	Not Available	748	Open in IMG/M
3300032390\|Ga0325404_1110774	Not Available	645	Open in IMG/M
3300032390\|Ga0325404_1111087	Not Available	641	Open in IMG/M
3300032735\|Ga0325410_1067566	All Organisms → Viruses → Predicted Viral	1525	Open in IMG/M
3300032735\|Ga0325410_1083962	All Organisms → Viruses → Predicted Viral	1018	Open in IMG/M
3300032735\|Ga0325410_1091042	Not Available	889	Open in IMG/M
3300032735\|Ga0325410_1097797	Not Available	799	Open in IMG/M
3300032735\|Ga0325410_1126317	Not Available	523	Open in IMG/M
3300032740\|Ga0325411_1043235	All Organisms → Viruses → Predicted Viral	2910	Open in IMG/M
3300032740\|Ga0325411_1115634	Not Available	532	Open in IMG/M
3300032741\|Ga0325414_1098360	Not Available	982	Open in IMG/M
3300032741\|Ga0325414_1103996	Not Available	897	Open in IMG/M
3300032741\|Ga0325414_1111101	Not Available	813	Open in IMG/M
3300032741\|Ga0325414_1114052	Not Available	784	Open in IMG/M
3300033160\|Ga0325402_1063213	All Organisms → Viruses → Predicted Viral	2230	Open in IMG/M
3300033160\|Ga0325402_1066082	All Organisms → Viruses → Predicted Viral	2110	Open in IMG/M
3300033160\|Ga0325402_1089310	All Organisms → Viruses → Predicted Viral	1379	Open in IMG/M
3300033160\|Ga0325402_1106343	Not Available	1038	Open in IMG/M
3300033160\|Ga0325402_1114254	Not Available	921	Open in IMG/M
3300033160\|Ga0325402_1141270	Not Available	647	Open in IMG/M
3300033160\|Ga0325402_1153963	Not Available	553	Open in IMG/M
3300034389\|Ga0325419_071679	All Organisms → Viruses → Predicted Viral	1411	Open in IMG/M
3300034389\|Ga0325419_079391	Not Available	1187	Open in IMG/M
3300034389\|Ga0325419_097856	Not Available	857	Open in IMG/M
3300034389\|Ga0325419_107526	Not Available	758	Open in IMG/M
3300034389\|Ga0325419_116155	Not Available	665	Open in IMG/M
3300034389\|Ga0325419_119237	Not Available	637	Open in IMG/M
3300034688\|Ga0325420_049078	All Organisms → Viruses → Predicted Viral	2628	Open in IMG/M
3300034688\|Ga0325420_098269	All Organisms → Viruses → Predicted Viral	1092	Open in IMG/M
3300034688\|Ga0325420_116972	Not Available	851	Open in IMG/M
3300034688\|Ga0325420_138169	Not Available	656	Open in IMG/M
3300034688\|Ga0325420_143296	Not Available	616	Open in IMG/M
3300034688\|Ga0325420_157168	Not Available	526	Open in IMG/M
3300034689\|Ga0325421_044352	All Organisms → Viruses → Predicted Viral	2771	Open in IMG/M
3300034689\|Ga0325421_067910	All Organisms → Viruses → Predicted Viral	1659	Open in IMG/M
3300034689\|Ga0325421_075899	All Organisms → Viruses → Predicted Viral	1409	Open in IMG/M
3300034689\|Ga0325421_097071	Not Available	971	Open in IMG/M
3300034689\|Ga0325421_120514	Not Available	719	Open in IMG/M
3300034689\|Ga0325421_150167	Not Available	503	Open in IMG/M
3300034778\|Ga0325423_075626	All Organisms → Viruses → Predicted Viral	1301	Open in IMG/M
3300034778\|Ga0325423_124451	Not Available	598	Open in IMG/M
3300034819\|Ga0373958_0116193	Not Available	642	Open in IMG/M
3300034899\|Ga0325407_044700	All Organisms → Viruses → Predicted Viral	2892	Open in IMG/M
3300034899\|Ga0325407_060845	All Organisms → Viruses → Predicted Viral	1979	Open in IMG/M
3300034899\|Ga0325407_091767	All Organisms → Viruses → Predicted Viral	1039	Open in IMG/M
3300034899\|Ga0325407_095103	Not Available	983	Open in IMG/M
3300034899\|Ga0325407_110691	Not Available	786	Open in IMG/M
3300034901\|Ga0325409_033864	All Organisms → Viruses → Predicted Viral	3881	Open in IMG/M
3300034901\|Ga0325409_050430	Not Available	2467	Open in IMG/M
3300034901\|Ga0325409_077426	All Organisms → Viruses → Predicted Viral	1255	Open in IMG/M
3300034901\|Ga0325409_098290	Not Available	835	Open in IMG/M
3300034901\|Ga0325409_119452	Not Available	602	Open in IMG/M
3300034901\|Ga0325409_127989	Not Available	539	Open in IMG/M
3300034901\|Ga0325409_130645	Not Available	523	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	100.00%

Habitat	Taxonomy	Distribution
Wood	Host-Associated → Plants → Wood	73.91%
Phylloplane	Host-Associated → Plants → Phylloplane	23.19%
Roots	Host-Associated → Plants → Roots	2.17%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Wood → Unclassified	73.91%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	23.19%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	2.17%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Wood → Unclassified → Unclassified	73.91%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	23.19%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	2.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Xylem	Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem	73.91%
Leaf	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Leaf	23.19%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	2.17%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300032354	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R4	Host-Associated	Open in IMG/M
3300032355	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R2	Host-Associated	Open in IMG/M
3300032374	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R1	Host-Associated	Open in IMG/M
3300032389	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2	Host-Associated	Open in IMG/M
3300032390	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R1	Host-Associated	Open in IMG/M
3300032735	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdIQD-R3	Host-Associated	Open in IMG/M
3300032740	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdIQD-R4	Host-Associated	Open in IMG/M
3300032741	Populus deltoides microbial communities from Bellville, Georgia, United States - Leaf-PdKOR-R3	Host-Associated	Open in IMG/M
3300033160	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R3	Host-Associated	Open in IMG/M
3300034389	Populus deltoides microbial communities from Bellville, Georgia, United States - Leaf-Control-R4	Host-Associated	Open in IMG/M
3300034688	Populus deltoides microbial communities from Bellville, Georgia, United States - Leaf-PdIQD-R1	Host-Associated	Open in IMG/M
3300034689	Populus deltoides microbial communities from Bellville, Georgia, United States - Leaf-PdIQD-R2	Host-Associated	Open in IMG/M
3300034778	Populus deltoides microbial communities from Bellville, Georgia, United States - Leaf-PdIQD-R4	Host-Associated	Open in IMG/M
3300034819	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1	Host-Associated	Open in IMG/M
3300034899	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R4	Host-Associated	Open in IMG/M
3300034901	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdIQD-R2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0075364_110062791	3300006051	Populus Endosphere	GTQKLLSRVTRGFYSPDSPLGSQKLLSRVTRGFDSPDGPLVSQKLLSRVTRGFGSPDSP*
Ga0075364_110062792	3300006051	Populus Endosphere	VDSTARQPPRSQKLLSRVTRGFDSRDSPLGTQKLLSRVTRGFYSPDSPLGSQKLLSRVT
Ga0075364_112340882	3300006051	Populus Endosphere	VTRKFDRPDSPLGSQKQLSRERRGFDSRDSSLGTQKHLSRVTRGFESPDSPLGSQK
Ga0325403_10248041	3300032354	Xylem	VDVTALGTQKLLSRLTRGFDSPDSPLGTQKLLSRVTCGFDSPHTFLGSQKLLSRVTCGFDSPHTSLGSQKLLS
Ga0325403_10580413	3300032354	Xylem	RPDSPLGTEKLLSQVSRGFDSPIGSQKLLSRVTRGFDRSDSPKGSQKLLSPVTRGFDSQTAP
Ga0325403_10600523	3300032354	Xylem	LLSRVTRGFDSPHSPLGSQKLLSRVKHVFDNPHTQLGSQELLSRVTRGFDRPHNPLGKQNCH
Ga0325403_10623221	3300032354	Xylem	ITGVAWIRQPTQRLGNQQLLSMVTREFDSPHSPLGSQKLLSRVTRGFDSPHIPLGSQERVSRVTLGLDSPHSP
Ga0325403_10739173	3300032354	Xylem	VTRGFDRPESRLGSQKLLSRVTRGFDTPHNPQVSQKLLSPVKRGFDSLDSP
Ga0325403_11046753	3300032354	Xylem	VSRLTRGFDCPDSPLGTQKLLSRVTRGFDSPLGSQKLLSRVTREFDSPDSPLGTQKLL
Ga0325403_11048881	3300032354	Xylem	VHPTARQPPRSQKLLSRVTRGFDSPDSPLGSQKLLSRVTRGFDSPYSPLGSQKLLSRVTR
Ga0325403_11174682	3300032354	Xylem	LGTQKLLSRVTRGFYSRDSPLGSQKLLSRVTRGFHRPDSPLRSQKLLSRVTRGFGSPDSP
Ga0325403_11373271	3300032354	Xylem	DRPDSPLQSQKLLSRVTRGFESRDIPLRGQKLLSRVTRGFDSPLDIQKLLSRVARGFDSPDSPLGTEKHL
Ga0325403_11399831	3300032354	Xylem	PLGSQKLLSRVTRGFDSPHSPLGSQKLLSRVTRGFDSPHSPLESQKLLSRGTRGFYN
Ga0325403_11400311	3300032354	Xylem	MLLRVTRGFDSRDIPLGTQKLLSRVTRGFDSPDGPLVSQKLLSRVTRGFDS
Ga0325403_11528592	3300032354	Xylem	LGSQKLLSRVTREFDSPDSPLGTQKLLSRVTRGFDSPLGSQTLQSMVTRGFDSQTAP
Ga0325403_11658421	3300032354	Xylem	KLLSRVTREFDSPDSPLGTQKLLSRVTRGFDSPLGSQKLQSMVTRGFDSQTAP
Ga0325403_11664991	3300032354	Xylem	LIRQPRQPLGTEELLSRVTREFDSRDRPLGTQKLLSRVTRGFDSPLGSQKLLSRVTREFDSPDSPLG
Ga0325403_11668871	3300032354	Xylem	VTREFDSPDSPLGTQKLLSQVTRGFDSPLESQKLLSRVTREFDS
Ga0325401_10479223	3300032355	Xylem	MESETVSRVTRGFDILDSPLGSQKLLSRVTRGFDSRDSPLRSQKLVSRVTRGFDSPDSP
Ga0325401_10510412	3300032355	Xylem	MVTREFDSPHSPLGSQKLLSRVTRGFDSPPIPLGSQERVSRVTRGLDNPHSP
Ga0325401_10604252	3300032355	Xylem	MVTREFDSPHSPLGSQKLLSRVTRGFDSPHIPLGSQERVSRVTLGLDSPHSP
Ga0325401_10638691	3300032355	Xylem	MVTREFDSPHSPLGSQKLLSRVTRGFDSPHIPLGSQERVSRVTRGLDSPHSP
Ga0325401_11005071	3300032355	Xylem	VSRVTRGFDSPTSNLGSQKLLSRVTRGFDSPHIPLGRQERVSRVTRG
Ga0325401_11058263	3300032355	Xylem	LDSPHNPLGTEKLLSRVTRGFDRPDSPLGSQKLLSLVTRGFDRPDSPLGTEKLLSPVT
Ga0325401_11833561	3300032355	Xylem	YSPDSPLESQKLLSRVTRGFYSPDSPLGSQKLLSRVTRGFDSPDSPIVSQKLLSRVTR
Ga0325401_11870551	3300032355	Xylem	VTRGFYSPDSPLGSQKLLSRVTRGFDRPDSPVETQKLLSRVTRGFDSP
Ga0325401_11909861	3300032355	Xylem	VTREFDRLDSPLGSQKLLLLVTHGFDRPDSPLGTEKLLSPVTRGYDRPDSPLGSQKLLSRVTRGF
Ga0325401_11933871	3300032355	Xylem	RLTRGFDSPDSPLRSQNLLSRVTRKFDRPYSPLGSQKLLSRVTGGFDSHTAH
Ga0325401_11973561	3300032355	Xylem	VTREFDRPDSPLGSQKLLLLVTPGFDRPDSPLGTEKLLSPVTRGYDRPDSPLG
Ga0325401_12093012	3300032355	Xylem	GFDRPDSPLGTEKLLSPVTRGYDRPDSPLGSQKLLSRVTRGFDRPDSPLGTEKLLSLVTRGFDSPDSP
Ga0325401_12142682	3300032355	Xylem	VSRLTRGFDSPDSPLGTQKLLSRVTRGFYSPDSPLGSQKLLSRVTRGFDRPDSPVETQKLLSRVT
Ga0325401_12230781	3300032355	Xylem	MSRVPRGFHSPHSPLGSQKLLSRVTRVFNSPHSPLGSQKLLSRLTREFYCPHS
Ga0325401_12345961	3300032355	Xylem	MRQPRQPLGIEELLSRVTRAFDSPDSPLGTQKLLSRVTRGFDSPLGSQKLLSRVTREFDSPD
Ga0325401_12490491	3300032355	Xylem	RGFDSPLGTQKLLSRVRRGFDSPQGGQKLLSRVTRGFGSPLGRQKLLSRVTRGFDSQTAP
Ga0325400_11044681	3300032374	Xylem	MLSRVTCGFDSRPSPLGSQKPLSRVTRGFDSPHIPLGRQERVSRVTRGFDSPHSPYGVSNCCH
Ga0325400_11399721	3300032374	Xylem	KLLSRVTLGFDRPDSPLGSQKLLSLVTRGFDRPDSPLGTEKLLSPVTR
Ga0325400_11861691	3300032374	Xylem	LLSRVTRGFDSPHSPLGSQKLLSRVTRGFDSPHSPLGSQKLLSRVTRGFYSQDSPLGSEKSSTKCCHG
Ga0325400_11988571	3300032374	Xylem	VTRGFDSRDSPLGTQKLLSQVTRGFDRPDSPVRSQKLLSRVTRGFDSPDGPLVSQKLLSRVTRGLYSPDSPL
Ga0325400_11999951	3300032374	Xylem	VTRGFDSPHSPLGSQKLLSRVTRGFDSPHSPLGSQKLLSRVTRVFNSPHSPLGSQKLLSRLTREFYCPHS
Ga0325400_12567581	3300032374	Xylem	RVTRGFDSPHSPLGSQKLLSRVTRGFDSPHSPLESQKLLSRGTRGFYN
Ga0325400_12702431	3300032374	Xylem	DSPLGTEKLLSLVTRGFDRPDSPLGSQKLLSLVTRGFDRPDSPLGSQKLLSLVTRGFDRPDSP
Ga0325400_12939041	3300032374	Xylem	PLGAEKLLSPVTRGFERPDSSLGSQKLLSRVTRGFDRPDSPLGTEKLLSLVKRRFDSLDS
Ga0325400_12957712	3300032374	Xylem	VTRGFDRPDSPLQSQKLLSRVTRGFESRDIPLRSQKLLSRVTRGFDSPLDIQKLLSRVTRGF
Ga0325405_10334205	3300032389	Xylem	VTRGFDSPLGSQKLLSRVTREFDSPDSPLGTQKLLSRVMRGFDSPLGSQKLLSRVTRGFDSQTAP
Ga0325405_10369694	3300032389	Xylem	VTRGFYRPDSPLRSQKLLSRVTRGFYRPDSPLRSQKLLSRVTRGFDSPDGPLVSQKLLSRVTRGFGSPDSP
Ga0325405_10406032	3300032389	Xylem	MVTREFDSPHSPLGSQKLLSRVTRGFDSPPIPLGSQERVSRVTRGLDSPHSP
Ga0325405_10786231	3300032389	Xylem	SQKLLSRVTREFDSPDSPLGTQKLLSRVTRGFDSPLGSQKLQSRVTRGFDSPTAP
Ga0325405_10887731	3300032389	Xylem	MSRVTRGFDSPPSPLGSQKLLSRVTRGFDSPHIPLGSQKRESRVTRGFDSPHSPLGSQ
Ga0325405_10933241	3300032389	Xylem	VTREFDSPDSPLGTQKLLSRVTRGFDSPLGSQKLLSRVTREFDSPDSPLETQKLLS
Ga0325405_10976541	3300032389	Xylem	YSPDSPLGSQKLLSRVTRGFDSPDGPLVSQKLLSRVTRGFDSQDSPLGTQKLL
Ga0325405_11082582	3300032389	Xylem	EELLSRVTRAFDSPDSPLGTQKLLSRVTRGFDSPLGSQKLLSRVTRGFDSQTAP
Ga0325405_11140371	3300032389	Xylem	IPLRSQKLLSRVTRGFDSPLDIQKLLSRVTRGFDSPDSPLGTEKHLSRVRR
Ga0325405_11170162	3300032389	Xylem	MLLRVTRGFDSRDSPLGSQKLLSRVTRGFYSPDSPLGSQKLLSRVTRGFDSQTAPL
Ga0325405_11193161	3300032389	Xylem	VTREFDSPDSPLGIQKLLSRVTRGFDSPLGSQKLLSRVTRGFDSQT
Ga0325405_11307311	3300032389	Xylem	GFYSPDSPLGSQKLLSRVTPGFDRPDSPLQSQKLLSRVTRGFESRDIPLRGQKLLSRVTRGFDSQ
Ga0325404_10290521	3300032390	Xylem	VTRGFYNPDSPLGSQKLLSRVTRGFDRPDSRLRSQKLLSRVTRGFDSPDGTHVSQKLLSRVTRGFGSPDSP
Ga0325404_10465681	3300032390	Xylem	VDSTARQPPRSQKLLSRVTRGFDSRDSPLGTQKLLSRVTRGFDSTLGSQKLLSRVTRGFDSQTAP
Ga0325404_10617261	3300032390	Xylem	VTREFDSQDSPLGTQKLLSRVTRGFDSPLGSQKLLSWVTREFDSPDSPLGTQKLLS
Ga0325404_10720801	3300032390	Xylem	VTRGFYSPDSPLRSQKLLSRVTRGFDSPDGPLVSQKLLSRVTRGFDSRD
Ga0325404_10742581	3300032390	Xylem	DGSDSLLGTQKLQSRVTRGLYSPDSPLGSQKLLSRVTRGFDSPHSPVETQKLVSRVTRGFDSPDNPLGTQKHLSRVRR
Ga0325404_10831211	3300032390	Xylem	VTRGFDSPDSPLRSQKLLSRVTRGFDSPDGPLVSQKLLSRVTRGFDSRDSPLGTQKLLS
Ga0325404_11034291	3300032390	Xylem	VTRGFYSPDSPLGSQKLLSRVTRGFDSPDGPLVSQKLLSRVTRGFDSRDSPLGTQ
Ga0325404_11068381	3300032390	Xylem	TRGFESRDIPLRSQKLLSRVTRGFDSPLDIQKLLSRVTRGFDSPDSPLGTEKHLSRVRR
Ga0325404_11107741	3300032390	Xylem	LDSRDSPLGSQKLLSRVTLGFDRPDSPLGSQKLLSLVTRGFDRPDSPLGTEKLLSPVTRGFDRPDSPLGT
Ga0325404_11110871	3300032390	Xylem	MLSRVTRGFDSPHIPLGSQERVSRVTRGVDNPHSPLGSQKLLSRVTRGLDSPHSPLGVRN
Ga0325404_11139221	3300032390	Xylem	VSRLTRGFDCPDSPLGTQKLLSRVTRGFDGADSLLGTQKLQSRVTRGLYSPDSPLGSQKLLS
Ga0325410_10402403	3300032735	Xylem	VSRVTRGFDSPHSPLGSQILLSRVTRGFDSPHSPVGSQQLPSRVTRGFYSQDSPLRSEK
Ga0325410_10675661	3300032735	Xylem	VTRRFDSPHGNLGSQKLLSRVTRGFDSPHIPLGRQERVSRVTRGVDSP
Ga0325410_10839621	3300032735	Xylem	MSRVTRGFDSPPSPLGSQKLLSRVTRGFDSPHIPLGSQKRESRVTRGFDSPHSPLGSQQL
Ga0325410_10910421	3300032735	Xylem	VSRVTRGFDSPTSNLGSQKLLSRVTRGFDSPHIPLGRQERVS
Ga0325410_10977971	3300032735	Xylem	VTRGFDSPDGPLVSQKLLSRVTRGFYSPDSPLGSQKLLSRVTRGFDRPDSPLRSQKLLSRVTRGFGSPDSP
Ga0325410_11152161	3300032735	Xylem	LSRVTRGFESRDIPLRSQKLLSRVTRGFDSPLDIQKLLSRVTRGFDSPDSPLGTEKHLSRVRR
Ga0325410_11263171	3300032735	Xylem	DSPLGSQKLLSRVTRGFDRPDSPLRSQKLLSRVTRGFKSRDSRLGSQKLLSLVMR
Ga0325411_10327601	3300032740	Xylem	VTRGFDSPHSPLGSQKLLSQVTRGFDSPQSPLGSQKLLSRVTRGFYNQDSPLGSEKSSTNCC
Ga0325411_10432354	3300032740	Xylem	VTRGFDSPLGSQKLLSRVTREFDSPDSPLGTQKLLSRVTRGFDSPLGSQKLQLMVTRGFDSQTAP
Ga0325411_10920871	3300032740	Xylem	VSTLTSGFDCPDSPLGTQKLVSRVTRGFNSPLGSQKLLSRVTRGFDSPHSPVETQKTAVT
Ga0325411_11156342	3300032740	Xylem	RGFDSPLGTQKLLSRVRRGFDSPQGGQKLLSRVTRGFDSPLGSQKLLSRVTRGFDNQTAL
Ga0325414_10774362	3300032741	Leaf	FDRPESPLGSQKLLSWLTRGFDRPDSPLGSQKLLSRVTRGFERPDSPLGS
Ga0325414_10983601	3300032741	Leaf	GFDSRDSPLGTQKLLSRVTRGFYSRDSPLGSQKLLSRVTRGFHRPDSPLRSQKLLSRVTRGFGSPDSP
Ga0325414_11039961	3300032741	Leaf	QKLLSRVTREFDSPDSPLGTQKLLSRVTRGFDSPLGSQKLQSMVTRGFDSQTAP
Ga0325414_11111011	3300032741	Leaf	LIRQPRQPLGTEELLSRVTREFDSRDRPLGTQKLLSRVTRGFDSPLGSQKLLSRVTREFDSPDSPLGTQ
Ga0325414_11140521	3300032741	Leaf	MRQPRQPLGIEELLSRVTRAFDSPDSPLGTQKLLSRVTRGFDSPLGSQKLLSRVTRAFDSPD
Ga0325414_11301732	3300032741	Leaf	LSRVTRGFDRPDSPLGTEKLLSLVTRGFDTPHNPLVSQKLLSPVKRGFDSLDSP
Ga0325414_11343421	3300032741	Leaf	EKLLSPVTHGYDRPDSPLGSHKLLSRVTRGFDRPDSPLGTEKLLSLVTRGFDSPDSP
Ga0325402_10607571	3300033160	Xylem	LLSRVTRGFDRPDSPLQSQKLLSRVTRGFESRDIPLRSQKLLSRVTRRFDSPDSPLGTEKHLSRVRR
Ga0325402_10632132	3300033160	Xylem	VTREFDSPHSPLGSQKLLSRVTRGFDSPHIPLGSQERVSRVTLGLDSPHSP
Ga0325402_10660823	3300033160	Xylem	KLLSRVTRGFDRPDSPLGSQKLQSRVTRGFDRPDSPLGSHKLLSRVTLGFDRPDSP
Ga0325402_10696211	3300033160	Xylem	VTRGFGSLDSPLRTQKLLSPVTRGFDSLDSPLGSQKLLSRVTRGYDSRDSPLRSQKLLSRVTREFDSPDSP
Ga0325402_10791471	3300033160	Xylem	VSRLTRGFDSPDSPLGTQKLLSRVTRGFYSPDSPLGSQKLLSRVTRGFDRPDSPVETQKLLSRV
Ga0325402_10893101	3300033160	Xylem	MVTREFDSPHSPLGSQKLLSRVTRGFDSPHIPLGSQERVSRVT
Ga0325402_11063431	3300033160	Xylem	PLGSQKLLSRVTRGFHSPHTALGNQKLLSRVTRGFDSPHSLVGTQKLLSPVTRGFDTPHT
Ga0325402_11142542	3300033160	Xylem	LGTQKLLSRVTRGFYSPDSPLGSQKLLSRVTRGFDSPDGPLVCQKLLSRVTRGFGSPDSP
Ga0325402_11345691	3300033160	Xylem	VDSTARQPPRSQKLLSRVTRGFDSRDSPLGTQKLLSRVTRGFDSPLGSQKLLSRVTRGFDSQ
Ga0325402_11412701	3300033160	Xylem	VTRAFDSPDIPLGTQKLLSRVTRGFDSPLGSQKLLSRVTRGFDSRDSPLGTQK
Ga0325402_11539631	3300033160	Xylem	VTREFDSPHSPLGSQKLLSRVTRGFDSPHIPLGSQERVSRVTRGLDSPHSP
Ga0325402_11559441	3300033160	Xylem	VDSTARQPPRSQKLLSRVTRGFDSRDSPLGTQKLLSRVTRGFYGPDSLLGSQKLLSGVTRGFGSPDSA
Ga0325419_039499_709_888	3300034389	Leaf	MSRVTRGFDSPHSPLGSQILLSRVTRGFDSPHSPVGSQQLPSRVTRGFYSQDSPLRSEK
Ga0325419_071679_1_192	3300034389	Leaf	LSPLGSQKLLSRVTRGFDSPHSPLGSQKLLSRVTRGFDSPHSPLGSQKLLSRVTNGFYNQDSP
Ga0325419_079391_1_168	3300034389	Leaf	MTREFDSPDSPLGTQKLLSRVTRGFDSPLGSQKLLSRVTREFDSPDSPLETQKLLS
Ga0325419_097856_484_681	3300034389	Leaf	MKRGFDSPLGSQKLLSRVTREFDSRDSPLGTQKLLSRVTRGFDSPLGSQKLLSRVTRGFDSQTAP
Ga0325419_101417_3_182	3300034389	Leaf	MSTLTSGFDCPDSPLGTQKLVSRVTRGFNSPLGSQKLLSRVTRGFDSPHSPVETQKTAVT
Ga0325419_107526_1_150	3300034389	Leaf	MVTREFDSPHSPLGSQKLLSRVTGGFDRPHIPLRSQVRVSRVTRGLDSPH
Ga0325419_116155_463_663	3300034389	Leaf	MTRGFYRPDSPLRSQKLLSRVTRGFYRPDSPLRSQKLLSRVTRGFDSPDGPLVSQKLLSRVTRGFGS
Ga0325419_119237_3_170	3300034389	Leaf	MTRGFDSRDSPLGTQKLLSRVTRGFYSPDSPLGSQKLLSRVTRGFDSPDGPLVSQK
Ga0325419_125640_2_196	3300034389	Leaf	MDSTARQPPRSQKLLSRVTRGFDSPLGTQKLLSLVTRGFYSPDSPLGSQKLLSRVTRGFDSQTAP
Ga0325420_049078_2464_2628	3300034688	Leaf	QKLLSRVTREFDSPDSPLGTQKLLSRVTRGFDSPLGSQKLQSRVTRGFDSPTAP
Ga0325420_098269_927_1091	3300034688	Leaf	QKLLSRVTREFDSPDSPLGTQKLLSRVTRGFDSPLGSQKLLSRVTRGFDNQTAP
Ga0325420_116972_3_185	3300034688	Leaf	MSRVTRWFDSPHSNLGSQKLLSRVTRGFDSPPSPLGSQKLLSRVTRGFDSPHSLVGSQKT
Ga0325420_138169_464_655	3300034688	Leaf	MTRGFDSRDSPLGTQKLLSRVTRGFDRPDSPLRSQKLLSRVTRGFDSPDGPLVSQKLLSRVTRG
Ga0325420_143296_440_616	3300034688	Leaf	SQKLLSRVTRGFDSPHSPLGSQKLLSRVTRGFDSPHSPLGSQKLLSRVTNGFYNQDSP
Ga0325420_157168_1_153	3300034688	Leaf	MSRVTRGFDSPPSPLGSQKLLSRVTRGFDSPHIPLGSQKRESRVTRGFDSP
Ga0325421_044352_2_184	3300034689	Leaf	RQPDSPLGTQKLLSRVRRGFDSPLGTQKLLSRVRRGFDSPQGSQKLLSRVTRGFDSQTAL
Ga0325421_067910_3_188	3300034689	Leaf	MTRGFDSPLGSQKLLSRVTREFDSPDSPLGTQKLLSRVMRGFDSPLGSQKLLSRVTRGFDSQ
Ga0325421_075899_2_190	3300034689	Leaf	SPLGSQKLLSRVTRGFDSPHSPLGSQKLLSRVTRGFDSPHSPLGSQKLLSRVTNGFYNQDSP
Ga0325421_097071_229_426	3300034689	Leaf	MTRGFDSPLGSQKLLSRVTREFDSPDSPLGTQKLLSRVTRGFDSPLGSQKLQLMVTRGFDSQTAP
Ga0325421_120514_1_204	3300034689	Leaf	MTRGFYRPDSPLRSQKLLSRVTRGFYRPDSPLRSQKLLSRVTRGFDSPDGPLVSQKLLSRVTRGFGSP
Ga0325421_129347_1_162	3300034689	Leaf	MSTLTRGFDCPDSPLGTQKLLSRVTRGFDGSDSLLGTQKLQSRVTRGLYSPDSP
Ga0325421_150167_348_503	3300034689	Leaf	MTSGFDSPYSPLGSQKQLSRVTRGFDSPYSPLGSQKQLSRVTRGFYSPNSPL
Ga0325423_075626_1_198	3300034778	Leaf	MSRLTRGFDSPDSPLESQKLLSRVTRGFDRPDSPLRSQKLLSRVTRGFKSRDSPLGSQKLLSRVTH
Ga0325423_124451_1_150	3300034778	Leaf	MTRGFYSPDSPLRSQKLLSRVTRGFDSPDGPLVSQKLLSRVTRGFDSRDS
Ga0325423_133114_2_181	3300034778	Leaf	QKLLSRVTRGFDSPLDIQKLLSRVTRGFDNPHTSLGNQKLLSRVTRGFYSPHSPLETLK
Ga0373958_0116193_2_178	3300034819	Rhizosphere Soil	MSRVTRWFDSPHSNLGSQKLLSRVTRGFDSPHIPLGSQKRVSRVTRGFDSPPSPIGSQK
Ga0325407_044700_2426_2641	3300034899	Xylem	MTRGFYRPDSPLRSQKLLSRVTRGFYRPDSPLRSQKLLSRVTRGFDSPDGPLVSQKLLSRVTRGFGSPDSP
Ga0325407_060845_1_207	3300034899	Xylem	QPPPLAPPPTHLRTQKQLSRVTRGFDSRDSPLGTQKLLSRVTRGFDSPLGSQKLLSRVTREFDIPDSP
Ga0325407_091767_447_662	3300034899	Xylem	MTRGFYNPDSPLGSQKLLSRVTRGFDRPDSRLRSQKLLSRVTRGFDSPDGTHVSQKLLSRVTRGFGSPDSP
Ga0325407_095103_827_982	3300034899	Xylem	VTRGFDSPHSPLGSQKLLSRVTRGFDSPHSPLGSQKLLSRVTNGFYNQDSP
Ga0325407_095717_799_972	3300034899	Xylem	SRVTRGFDRPDSPLGTEKLLSLVTSGFDRPDSPLGTEKLLSRVTRGFDRPDSPLGSQ
Ga0325407_107123_3_188	3300034899	Xylem	MSTLTSGFDCPDSPLGTQKLVSRVTRGFNSPLGSQKLLSRVTRGFDSPHSPVETQKTAVTGD
Ga0325407_110691_619_786	3300034899	Xylem	MTRAFDNPDSPLGSQKLLSRVTRGFDSPLGSQKLLSWVTREFDSPDSPLGTQKLLS
Ga0325409_033864_1_201	3300034901	Xylem	RGFYSPDSPLGSQKLLSRVTRGFDSPLGSQKLLSRVTRGFDSPDGPLVSQKLLSRGTRGFGSPDSP
Ga0325409_050430_2_127	3300034901	Xylem	MSRVTRGFDSPTSNLGSQKLLSRVTRGFDSPHIPLGRQERVS
Ga0325409_059075_3_191	3300034901	Xylem	SPLGSQKLLSRVTCGFDSPDSPLGTQKLLSRETRGFDGPHSPLGSQKQLSRVTRGFDSQTAP
Ga0325409_077426_1035_1253	3300034901	Xylem	RVQRGFDSPHSPLGSQKLLSRVTRGFDSPHSPLGSQKLLSRVTRGFDSPHSPLGSQKLLSRVTNGFYNQDSP
Ga0325409_092708_695_913	3300034901	Xylem	MDSTARQPPRSQKLLSRVTRGFDSRDSPLGTQKLLSRVTREFDSPDSPLETQKLLSRVTRGFDSPLGSQKLLS
Ga0325409_098290_626_835	3300034901	Xylem	MRRGFDSPLGTQKLLSRVRRGFDSPQGGQKLLSRVTRGFDSPLGSQKLLSRVTREFDSPDSPLETQKLLS
Ga0325409_119452_412_600	3300034901	Xylem	SPLGSQKLLSRVTRGFGRPDSPLRSQKLLSRVTRGFDSPDGPLVSQKLLSRVTRGFGSPDSP
Ga0325409_127989_293_469	3300034901	Xylem	MTRGFYSPDSPLGSQKLLSRVTRGFDSPDGPLVSQKLLSRVTRGFDSRDSPLGTQKLL
Ga0325409_130645_3_188	3300034901	Xylem	PLGSQKLLSRVTRGFDRPDSPLGSQKLLSRVTRGFDWPDNPKGSQKLLSPVTRGFDSQTA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F055312

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences