NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F055510

Metagenome / Metatranscriptome Family F055510

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F055510
Family Type Metagenome / Metatranscriptome
Number of Sequences 138
Average Sequence Length 47 residues
Representative Sequence MSTATDADLIALGERFEKLLLEHMDAWLEWAPRMRAALAEVRDNTAAL
Number of Associated Samples 101
Number of Associated Scaffolds 137

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 83.33 %
% of genes near scaffold ends (potentially truncated) 8.70 %
% of genes from short scaffolds (< 2000 bps) 7.97 %
Associated GOLD sequencing projects 95
AlphaFold2 3D model prediction Yes
3D model pTM-score0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (91.304 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(39.130 % of family members)
Environment Ontology (ENVO) Unclassified
(58.696 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(47.101 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 60.53%    β-sheet: 0.00%    Coil/Unstructured: 39.47%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.58
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 137 Family Scaffolds
PF12850Metallophos_2 11.68
PF04392ABC_sub_bind 8.76
PF03976PPK2 2.19
PF00072Response_reg 0.73
PF00891Methyltransf_2 0.73
PF02627CMD 0.73
PF13458Peripla_BP_6 0.73
PF13592HTH_33 0.73
PF08281Sigma70_r4_2 0.73
PF11154DUF2934 0.73
PF00005ABC_tran 0.73
PF01565FAD_binding_4 0.73
PF13467RHH_4 0.73
PF01028Topoisom_I 0.73
PF13779DUF4175 0.73
PF13683rve_3 0.73
PF02589LUD_dom 0.73
PF11953DUF3470 0.73
PF02653BPD_transp_2 0.73

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 137 Family Scaffolds
COG2984ABC-type uncharacterized transport system, periplasmic componentGeneral function prediction only [R] 8.76
COG2326Polyphosphate kinase 2, PPK2 familyEnergy production and conversion [C] 2.19
COG0599Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase familyGeneral function prediction only [R] 0.73
COG2128Alkylhydroperoxidase family enzyme, contains CxxC motifInorganic ion transport and metabolism [P] 0.73
COG3569DNA topoisomerase IBReplication, recombination and repair [L] 0.73


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A91.30 %
All OrganismsrootAll Organisms8.70 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000597|AF_2010_repII_A1DRAFT_10067232All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium911Open in IMG/M
3300005713|Ga0066905_100598845All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium933Open in IMG/M
3300006880|Ga0075429_101741482All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium541Open in IMG/M
3300010398|Ga0126383_10752315All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1055Open in IMG/M
3300016445|Ga0182038_10960589All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium755Open in IMG/M
3300026552|Ga0209577_10387753All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1012Open in IMG/M
3300031747|Ga0318502_10456207All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium763Open in IMG/M
3300031910|Ga0306923_11095359All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium858Open in IMG/M
3300031912|Ga0306921_12235450All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium575Open in IMG/M
3300031954|Ga0306926_10018216All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales8010Open in IMG/M
3300031981|Ga0318531_10063867All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1583Open in IMG/M
3300032010|Ga0318569_10529998All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium549Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil39.13%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil19.57%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil9.42%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil8.70%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil7.25%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil5.80%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil3.62%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere2.90%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.72%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.72%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.72%
AgaveHost-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave0.72%
Tropical Rainforest SoilEnvironmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil0.72%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000363Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000597Forest soil microbial communities from Amazon forest - 2010 replicate II A1EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005363Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146EnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005562Agave microbial communities from Guanajuato, Mexico - As.Ma.eHost-AssociatedOpen in IMG/M
3300005575Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151EnvironmentalOpen in IMG/M
3300005598Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155EnvironmentalOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006846Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4Host-AssociatedOpen in IMG/M
3300006880Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3Host-AssociatedOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012204Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012350Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012355Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012360Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300025915Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026310Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026325Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)EnvironmentalOpen in IMG/M
3300026552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)EnvironmentalOpen in IMG/M
3300027655Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)EnvironmentalOpen in IMG/M
3300031543Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20EnvironmentalOpen in IMG/M
3300031545Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26EnvironmentalOpen in IMG/M
3300031561Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26EnvironmentalOpen in IMG/M
3300031564Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21EnvironmentalOpen in IMG/M
3300031572Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19EnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031668Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23EnvironmentalOpen in IMG/M
3300031680Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22EnvironmentalOpen in IMG/M
3300031681Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20EnvironmentalOpen in IMG/M
3300031719Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)EnvironmentalOpen in IMG/M
3300031724Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031747Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22EnvironmentalOpen in IMG/M
3300031748Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22EnvironmentalOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031794Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23EnvironmentalOpen in IMG/M
3300031796Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24EnvironmentalOpen in IMG/M
3300031797Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23EnvironmentalOpen in IMG/M
3300031805Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23EnvironmentalOpen in IMG/M
3300031821Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20EnvironmentalOpen in IMG/M
3300031832Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25EnvironmentalOpen in IMG/M
3300031833Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178EnvironmentalOpen in IMG/M
3300031846Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031896Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19EnvironmentalOpen in IMG/M
3300031897Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031941Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300031946Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172EnvironmentalOpen in IMG/M
3300031947Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000HEnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300031981Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032010Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22EnvironmentalOpen in IMG/M
3300032035Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170EnvironmentalOpen in IMG/M
3300032039Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21EnvironmentalOpen in IMG/M
3300032044Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20EnvironmentalOpen in IMG/M
3300032052Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19EnvironmentalOpen in IMG/M
3300032063Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17EnvironmentalOpen in IMG/M
3300032065Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20EnvironmentalOpen in IMG/M
3300032066Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032089Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23EnvironmentalOpen in IMG/M
3300032091Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25EnvironmentalOpen in IMG/M
3300032094Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M
3300033290Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
ICChiseqgaiiFebDRAFT_1081687623300000363SoilMSTVDAALIALGERFERRLLEYMDAWLAWAPLMRAAR
AF_2010_repII_A1DRAFT_1006723233300000597Forest SoilMSTATDAELIALGDRFEKLLLEHMDAWLVWAPRMRAALAEVRDNTAALAVAIQRNGCDVAQAR
Ga0066388_10050372853300005332Tropical Forest SoilMSTAMDDELIVLGERFEKLLLEQMDAWLEWAPRMRAALAEVRDNTAALAVAIQR
Ga0066388_10454443343300005332Tropical Forest SoilMSTATDAELIALGERFEKLLLEHMDAWLAWAPRMRAAHAEVRDN
Ga0008090_1002901333300005363Tropical Rainforest SoilMSTATDADLIALGERFEKLLLEHMDTWLEWAPRMRAALAEVRDNTAALAVAIQRNGC
Ga0066697_1032146813300005540SoilMGEFPTSTATDTELIALGEQLEELLREYMDAWLEWAPRMRAAHAEAKDNTSALAVA
Ga0066697_1062287313300005540SoilMSTATDATLMAIGERFEKLLREHMDAWLTWAPRMRAARAEVEDNTASLAVA
Ga0066700_1075289033300005559SoilASRSMSTANPDAELVALGERFEKFLLEYMDAWLEWRR*
Ga0058697_1017465813300005562AgaveMSTATDGELIARCQRFERRLLEYMDAWLAWAPLMRAARAEAEK
Ga0066702_1095153513300005575SoilMSTANPDAELVAGGERFEKFLLEYMDAWLDWARRTRASGR*
Ga0066706_1138961313300005598SoilMGEFPTSALAETELIALGAQLERLLCEYMDAWLEWAPRMRAAHAEAKDN
Ga0066905_10017662113300005713Tropical Forest SoilMTTTDAALIALGERFEKLLLEHMDAWLEWAPRMRAAHAEVRDNMAAL
Ga0066905_10059884523300005713Tropical Forest SoilMSTADAALIALGERFERRLLEYMDAWLAWAPLMRAAR
Ga0066905_10147925913300005713Tropical Forest SoilMSTAMDDELIVLGERFEKLLLEHMDAWLEWAPRMRAAL
Ga0066905_10199456823300005713Tropical Forest SoilMTATDVALISLGERFEKLLLEHMDAWLEWAPRMRAAHAEVRDNMAALAV
Ga0066903_10578579013300005764Tropical Forest SoilMSTATDADLIALGERFEKLLLEHMDAWLEWAPRMRAALAEVRD
Ga0066903_10802496213300005764Tropical Forest SoilMSTATDAELIAIGERFEKLLLEHMDAWLVWAPRMRAAHAE
Ga0066652_10189289813300006046SoilMSTADAALIALGERFERRLLEYMDAWLAWAPLMRAA
Ga0075430_10085363223300006846Populus RhizosphereMSTAADSELVALGERFEKLLLEYLGSWLDWAPRMRAAHAEVGDNAAALAAAIQRTGG
Ga0075429_10174148213300006880Populus RhizosphereMREFPTSTATDTELIARGGQFEGLLREYMDVWLEWAPRMRAARAEARDNTVSLAVAIQRTGC
Ga0099793_1049592213300007258Vadose Zone SoilMSTANPDAELVARGERFEKFLLEYMDAWLEWAPLM
Ga0099829_1073448523300009038Vadose Zone SoilMSTANPDAELVARGERFEKFLLEYMDAWLEWAPLMRAARA
Ga0066709_10365465413300009137Grasslands SoilMGEFPTSTATDTELIALGAQLERLLCEYMDAWLEWAPRMRAAHAEAKDNTSA
Ga0114129_1075113013300009147Populus RhizosphereMSTANPDAELVARGERFEKFLLEYMDAWLEWAPLMRAARAEV
Ga0111538_1286227813300009156Populus RhizosphereMTATDAALIALGERFEKFLLEYMDAWLEWAPLMRAARA
Ga0126384_1206583823300010046Tropical Forest SoilMTATDAALIALGERFEKLLLKHMDAWLEWAPRMRAAHAEVRDN
Ga0126384_1213902813300010046Tropical Forest SoilMTATDAALIALGERFEKLLLEHMDAWLEWAPRMRAAHAEV
Ga0126382_1074130413300010047Tropical Forest SoilMMSTATDAELIALGERFEKLLLEYVDAWLAWAPLMRAARA
Ga0126376_1022788843300010359Tropical Forest SoilMSTATDAELIALGDRFEKLLLEHMDAWLVWAPRMRAALA
Ga0126378_1311115423300010361Tropical Forest SoilMTATDVALISLGERFEKLLLEHMDAWLEWAPRMRAAHAEVRDNMA
Ga0126381_10027213343300010376Tropical Forest SoilMSTETDTKLIALGERFEKLLLEHMDAWLEWAPRMRAA
Ga0126381_10312423133300010376Tropical Forest SoilMSTATDAELIALGERFEKLLLEHLDAWLEWAPRMRAALAEVRDNTAALAAAIQRSG
Ga0126381_10426604313300010376Tropical Forest SoilMSTETDTKLTALGERFEKLLLEHMDAWLEWAPRMRA
Ga0126383_1017445313300010398Tropical Forest SoilMSTANPDDDLVALGERFEKFLLEYMDAWLEWAPLMR
Ga0126383_1075231513300010398Tropical Forest SoilMTATDAALIALGERFEKLLLVHMDAWLEWAPRMRAAHAEVRDNMAALAVAIQRTGCDVAQ
Ga0126383_1082746313300010398Tropical Forest SoilMSTATDAELIALGERFEKLLLEHMDAWLAWAPRMRAALAEVRDNTAALA
Ga0137364_1084036223300012198Vadose Zone SoilMSTATDATLMALGERFERLLREHMDAWLTWAPRMRAARAE
Ga0137374_1119386213300012204Vadose Zone SoilMSTAPDAELVALGERFEKLLLEYVDAWLEWAPLMRAARA
Ga0137362_1116215923300012205Vadose Zone SoilMDLIALGEQLEGLLREYMDAWLEWAPLMRAARAQVGDDIAVL
Ga0137378_1087872913300012210Vadose Zone SoilMSTANPDAELVAGGERFEKFLLEYMDAWLDWAPLTRTHS
Ga0137377_1069715543300012211Vadose Zone SoilMSTATDATLMAIGERFEKLLREHMDAWLTWAPRMRAARAEVED
Ga0137372_1067355523300012350Vadose Zone SoilMSIATDATLIALGERFEKLLLEHMDAWLTWAPRMRAARAEVEDNTASLA
Ga0137369_1046157013300012355Vadose Zone SoilMSTANPDAELVARGERFEKFLLEYMDAWLEWAPLMRAARAQV
Ga0137385_1162636723300012359Vadose Zone SoilMGEFPTSTATDTELIALGEQLEGLLREYMNAWLEWAPRMR
Ga0137375_1037907023300012360Vadose Zone SoilMSTATDATLIALGERFEKLLLEHMDAWLTWAPRMRAARAEVEDN
Ga0137359_1106477213300012923Vadose Zone SoilMTTATDVELIELGERFEKLLLEHMDAWLAWAPRMRAAHAEVRDNTAALAVAIQRTGC
Ga0126369_1155855433300012971Tropical Forest SoilMSTATDADLIALGERFEKLLLEHMDAWLEWAPRMRAALAEVRDNTAALVVAMRRN
Ga0164305_1212838823300012989SoilMTATDAALIALGERFEKLLLEHMDAWLEWAPRMRAAHAE
Ga0182036_1012421933300016270SoilMSTATDADLIALGERFEKLLLEHMDAWLEWAPRMRAALAEVRDNTAAL
Ga0182036_1143337613300016270SoilMSAAMDVELIALGERFEKLLLEHMDAWLAWAPRMRAAHAEVRDNMAALAVAIQRT
Ga0182041_1036714613300016294SoilMSTATDAELIAIGEQFEKLLLEHMDAWLEWAPRMRAALAEVRDNTAALAVATQRNG
Ga0182041_1052800213300016294SoilMSTATDAELIALGDRFEKLLLEHMDAWLVWAPRMRAA
Ga0182041_1175294423300016294SoilMSTATDADLIALGERFEKLLLEHMDAWLEWAPRMRAALAEVRDNTAALA
Ga0182033_1010557513300016319SoilMSTATDADLIALGERFEKLLLEHMDAWLEWAPRMRAALAEV
Ga0182034_1121731123300016371SoilMSTAMDDELIVLGERFEKLLLEQMDAWLEWAPRMRAALAEVRDNTAALAV
Ga0182037_1036525323300016404SoilMSTATDAELIAIGEQFEKLLLEHMDAWLEWAPRMRAALAEVRDNTAALAVA
Ga0182037_1106360423300016404SoilMSTATDADLIALGERFEKLLLEHMDTWLEWAPRMRAALAEVRDNTAAL
Ga0182038_1039794113300016445SoilMSTAMDDELIVLGERFEKLLLEQMDAWLVWAPRMRAALAEV
Ga0182038_1064785523300016445SoilMSTATDADLIALGERFEKLLLEHMDAWLQWAPRMRAALAEVRDNTAALAVA
Ga0182038_1096058923300016445SoilMTATDAALIALGERFEKLLLEHMDAWLEWAPRMRAAHAEVRDNMAALAVAIQRTGCDVAQ
Ga0066655_1091380823300018431Grasslands SoilMSTATDATLMAIGERFEKLLREHMDAWLTWAPRMRAAR
Ga0066667_1194929113300018433Grasslands SoilMGEFPTSALAETELIALGAQLERLLCEYMDAWLEWAPRMRAAHAEAKDNTSA
Ga0066667_1235628923300018433Grasslands SoilMSTATDATLMALGERFEKLLREHMDAWLTWAPRMRAARA
Ga0207693_1047216533300025915Corn, Switchgrass And Miscanthus RhizosphereMSTANPDAELVAGGERFEKFLLEYMDAWLDWAPLMRTA
Ga0209239_120084413300026310Grasslands SoilMGEFPTSTATDTELIALGEQLEGLLREYMDAWLEWAP
Ga0209152_1047999013300026325SoilMGEFPTSTATNTELIALGERLEGLLREYMDAWLEWAPRMRAAHAEAKDNTSAL
Ga0209577_1038775323300026552SoilMSTANLYAELIAGGERFEKVLLEYMDAWLEWAPLMRTARAQV
Ga0209577_1087248313300026552SoilMGEFPTSTATDTELIALGERLEGLLREYMDAWLEWAPRMRAAHAEAKDNTSALAVAVQRT
Ga0209388_113022823300027655Vadose Zone SoilMSTANPDAELVARGERFEKFLLEYMDAWLEWAPLMR
Ga0318516_1026621213300031543SoilMSTATDADLIALGERFEKLLLEHMDAWLEWAPRMRAALAEVRDNAAALAVAV
Ga0318541_1017188713300031545SoilMSTATNADLIALGERFEKLLLEHMDAWLEWAPRMRAA
Ga0318528_1035816813300031561SoilMSTETDTKLIALGERFEKLLLEHMDAWLVWAPRMRAALAEVRDNTAALAV
Ga0318528_1035816823300031561SoilMSTETDTKLIALGERFEKLLLEHMDAWLEWAPRMRAALAEVRDNTAALAVAIQRNGCD
Ga0318528_1051632313300031561SoilMTATDVALIALGERFEKLLLEHMDAWLEWAPRMRAAHAEVRDNMAALA
Ga0318528_1051634713300031561SoilMSTATDAELIAIGEQFEKLLLEHMDAWLEWAPRMRAALAEVRDNTAALAVATQRN
Ga0318573_1080568913300031564SoilMSTATNADLIALGERFEKLLLEHMDAWLEWAPRMRAALAEVRDNTAALAVAIQ
Ga0318515_1065366513300031572SoilMTETDAALIALGERFEKLLLEHMDAWLEWAPRMRAALAEVSDNMAAIAVAI
Ga0310915_1085844913300031573SoilMSTATDADLIALGERFEKLLLEHMDAWLQWAPRMRAALAEVRDNTAAL
Ga0318542_1015144223300031668SoilMSTATDAELIAIGEQFEKLLLEHMDAWLEWAPRMRAALAEVRDNTAAL
Ga0318542_1052742513300031668SoilMTATDAALIALGERFEKLLLEHMDAWLEWAPRMRA
Ga0318574_1067328613300031680SoilMTATDAALIALGERFEKLLLEHMDAWLEWAPRMRAAHAEVRDNM
Ga0318572_1077254213300031681SoilMTATDAALIALGERFEKLLLEHMDAWLEWAPRMRAAHAEVRDNMGALAVAIQ
Ga0306917_1021893033300031719SoilMSTATDADLIALGERFEKLLLEHMDAWLEWAPRMRAALAE
Ga0318500_1030660723300031724SoilMSTATDADLIALGERFEKLLLEHMDAWLEWAPRMRAALAEVRDNTAALVVAIRRSGCGVA
Ga0306918_1036965613300031744SoilMSTATDAELIAIGEQFEKLLLEHMDAWLEWAPRMRAALAEVRDNTAALAVATQRNGCD
Ga0318502_1045620723300031747SoilMSTETDTKLIALGERFEKLLLEHMDAWLEWAPRMRAALAEVRDNTAALAVAIQRNGCDVAQARM
Ga0318492_1017182313300031748SoilMSTATDAELIAIGEQFEKLLLEHMDAWLEWAPRMRAALAEVRDNTAALAV
Ga0318546_1064342213300031771SoilMSTATDAELIAIGEQFEKLLLEHMDAWLEWAPRMRAA
Ga0318503_1026689913300031794SoilMSTATDAELIAIGEQFEKLLLEHMDAWLEWAPRMRAALAEVRD
Ga0318576_1020836133300031796SoilMSTATDADLIALGERFEKLLLEHMDAWLEWAPRMRAALAEVRDNTAALVVAIRRSGC
Ga0318576_1031800913300031796SoilMGEFPTSTATDTDLIALGGQLEGLLREYMDAWLEWAPRMRAARTEAKDNMSALAVAIQ
Ga0318550_1009078523300031797SoilMSTATDAELIAIGEQFEKLLLEHMDAWLEWAPRMRAALAEVRDNTAALAVAIQR
Ga0318497_1034905213300031805SoilMTATDAALIALGERFEKLLLEHMDAWLAWAPRMRAAHAEVRD
Ga0318567_1079304313300031821SoilMSTATDADLIALGERFEKLLLEYMDAWLEWAPRMRAALAEVRDNTAALAVAIRR
Ga0318499_1032563313300031832SoilMSTETDTKLIALGERFEKLLLEHMDAWLVCAPRMR
Ga0310917_1005217333300031833SoilMSTATDAELIAIGERFEKLLLEHMDAWLVWAPRMRAAHAEVRDNTVALVAVIERSG
Ga0318512_1033867223300031846SoilMSTATDADLIALGERFEKLLLEHMDAWLEWAPRMRAALAEVRDNTAALVVAIRRTAMW
Ga0318512_1050790713300031846SoilMSTATDAELIAIGEQFEKLLLEHMDAWLEWAPRMRAALAEVRDNTAALAVAIQRP
Ga0306919_1015089513300031879SoilMSTATDADLIALGERFEKLLLEHMDAWLEWAPRMRAALVEVRDSTAALAVA
Ga0306925_1010036453300031890SoilMSTATDADLIALGERFEKLLLEHMDAWLEWAPRMRAALAEVRDNTAALV
Ga0306925_1019485563300031890SoilMSTATDADLIALGERFEKLLLEHMDAWLQWAPRMRAALAEVRDNTAALAVAIRRNGCDVG
Ga0306925_1046190913300031890SoilMSTATDAELIAIGEQFEKLLLEHMDAWLEWAPRMRAALAEVRDNTAALAVAIQ
Ga0318551_1060717213300031896SoilMSTETDTKLIALGERFEKLLLEHMDAWLVWAPRMRAAL
Ga0318520_1013186913300031897SoilMSTATDADLIALGERFEKLLLEHMDAWLEWAPRMRAALAEVRDNTAALVVAI
Ga0306923_1109535923300031910SoilMSTATDADLIALGERFEKLLLEYMDAWLEWAPRMRAALAEVRDNTAALAVAIRRNGCDV
Ga0306921_1137479513300031912SoilMTATDAALIALGERFEKLLLEHMDAWLEWAPRMRAA
Ga0306921_1223545013300031912SoilMSTETDTKLIALGERFEKLLLEHMDAWLEWAPRMRAALAEVRDNTAALAVAIQRNGCDVAQA
Ga0310912_1053139713300031941SoilMSTATDADLIALGERFEKLLLEHMDAWLEWAPRMRAALAEVRDNTAALVVAIRRT
Ga0310912_1070481213300031941SoilMSTATDAELIAIGEQFEKLLLEHMDAWLEWAPRMRAALAEVRDNTAA
Ga0310912_1140841723300031941SoilMSTATNADLIALGERFEKLLLEHMDAWLEWAPRMRAALAEVR
Ga0310916_1005351713300031942SoilMSTATDADLIALGERFEKLLLEHMDAWLEWAPRMRAALAEVRDNTAALVVAIRRNGCD
Ga0310910_1069436613300031946SoilMSTETDTKLIALGERFEKLLLEHMDAWLVWAPRMRAALAEVRDNTAA
Ga0310909_1005459853300031947SoilMSTATDADLIALGERFEKLLLEHMDAWLEWAPRMRAALAEVRDNTAALVVAIRRSG
Ga0310909_1022566313300031947SoilMTATDAALIALGERFEKLLLEHMDAWLEWAPRMRGAHAEVRDNMAA
Ga0310909_1030772043300031947SoilMDDELIVLGERFEKLLLEHMDAWLEWAPRMRAALAEVRDNTAALAVAVKRTGCDV
Ga0306926_1001821613300031954SoilMSTATDADLIALGERFEKLLLEYMDAWLEWAPRMRAALAEVRDNTAALAVAIRRNGCDVG
Ga0306926_1045768513300031954SoilMSTATDAELIAIGEQFEKLLLEHMDAWLEWAPRMRA
Ga0318531_1002750343300031981SoilMSTATDADLIALGERFEKLLLEHMDAWLEWAPRMRAALAEVRDN
Ga0318531_1006386733300031981SoilMSTATDAELIAIGEQFEKLLLEHMDAWLEWAPRMRAALAEVRDNTAALAVATQRNGCDVAQARM
Ga0306922_1034447013300032001SoilMSTATDADLIALGERFEKLLLEYMDAWLEWAPRMRAALAEVR
Ga0318569_1019230913300032010SoilMSAAMDVELIALGERFEKLLPEHMDAWLAWAPRMRAAHAEVRDNTAALAVAI
Ga0318569_1052999823300032010SoilMSTATDADLIALGERFEKLLLEHMDAWLEWAPRMRAALAEVRDNTAALVVAIRRSGCGV
Ga0310911_1013089813300032035SoilMSTATDAELIAIGEQFEKLLLEHMDAWLEWAPRMRAALAEVRDN
Ga0318559_1012288833300032039SoilMSTATDADLIALGERFEKLLLEHMDAWLEWAPRMRAALAEVRDNTAA
Ga0318559_1056945613300032039SoilMSTETDTKLIALGERFEKLLLEHMDAWLVWAPRMRAALAEVRDNT
Ga0318558_1062877823300032044SoilMTATDAALIALGERFEKLLLEHMDAWLEWAPRMRAAHAEVRDNMGALAVAIQR
Ga0318506_1011787913300032052SoilMSTATDADLIALGERFEKLLLEHMDAWLEWAPRMRA
Ga0318504_1049069113300032063SoilMSTATDAELIAIGEQFEKLLLEHMDAWLEWAPRMRAALAEVRDNT
Ga0318513_1060600113300032065SoilMSTATDAELIAIGEQFEKLLLEHMDAWLEWAPRMRAALAEVRDNTAALAVAI
Ga0318514_1015292133300032066SoilMSTATDADLIALGERFEKLLLEHMDAWLEWAPRMRAALAEVRDNTAALVVAIRSSGCGVA
Ga0306924_1001610973300032076SoilMSTATDADLIALGERFEKLLLEYMDAWLEWAPRMRAALAEVRHNTAALAVAIRRNGCD
Ga0318525_1041161113300032089SoilMSTATDAELIAIGEQFEKLLLEHMDAWLEWAPRMRAALAEVRDNTAALAVATQR
Ga0318577_1061416313300032091SoilMTATDAALIALGERFEKLLLEHMDAWLEWAPRMRAAHAEVRDNMGA
Ga0318540_1011635333300032094SoilMSTATDADLIALGERFEKLLLEHMDAWLEWAPRMRAALAEVRDNTAALVVAIRRS
Ga0306920_10036316413300032261SoilMSTETDTKLIALGERFEKLLLEHMDAWLEWAPRMRAALAEVRDNTAALAVAIQRNGC
Ga0306920_10112414113300032261SoilMSAAMDVELIALGERFEKLLLEHMDAWLAWAPRMRAAHAEVRDNMAALAVAIQ
Ga0310914_1109309513300033289SoilMSTAMDDELIVLGERFEKLLLEQMDAWLEWAPRMRAALAEVR
Ga0318519_1064283323300033290SoilMSTAMDDELIVLGERFEKLLLEHMDAWLEWAPRMRAALAEVRDNAA


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.