Metagenome / Metatranscriptome Family F055570

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F055570
Family Type	Metagenome / Metatranscriptome
Number of Sequences	138
Average Sequence Length	44 residues
Representative Sequence	MRRRLIRIALILLLFPPLLAAVAGWLAAPAFLHPIRRELTPDLI
Number of Associated Samples	109
Number of Associated Scaffolds	138

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	59.85 %
% of genes near scaffold ends (potentially truncated)	97.83 %
% of genes from short scaffolds (< 2000 bps)	86.96 %
Associated GOLD sequencing projects	105
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (96.377 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (34.783 % of family members)
Environment Ontology (ENVO)	Unclassified (35.507 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.174 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 47.22% β-sheet: 0.00% Coil/Unstructured: 52.78%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 138 Family Scaffolds
PF00903	Glyoxalase	4.35
PF12679	ABC2_membrane_2	4.35
PF12698	ABC2_membrane_3	3.62
PF14559	TPR_19	2.90
PF03551	PadR	2.17
PF02225	PA	2.17
PF13482	RNase_H_2	1.45
PF01243	Putative_PNPOx	1.45
PF13180	PDZ_2	1.45
PF13618	Gluconate_2-dh3	1.45
PF00196	GerE	0.72
PF00027	cNMP_binding	0.72
PF03544	TonB_C	0.72
PF02371	Transposase_20	0.72
PF04389	Peptidase_M28	0.72
PF03992	ABM	0.72
PF00005	ABC_tran	0.72
PF13517	FG-GAP_3	0.72
PF13304	AAA_21	0.72
PF02321	OEP	0.72
PF13533	Biotin_lipoyl_2	0.72
PF06884	DUF1264	0.72
PF14534	DUF4440	0.72
PF12762	DDE_Tnp_IS1595	0.72
PF12704	MacB_PCD	0.72
PF01425	Amidase	0.72
PF13365	Trypsin_2	0.72

COG ID	Name	Functional Category	% Frequency in 138 Family Scaffolds
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	2.17
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	2.17
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	2.17
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.45
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.72
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.72
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.38 %
Unclassified	root	N/A	3.62 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.38 %
Unclassified	root	N/A	3.62 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.38 %
Unclassified	root	N/A	3.62 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	63.04 %
Unclassified	root	N/A	3.62 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	2.17 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.72 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	30.43 %
Unclassified	root	N/A	3.62 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2.17 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.90 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	30.43 %
Unclassified	root	N/A	3.62 %
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	2.17 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	1.45 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.45 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.72 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	30.43 %
Unclassified	root	N/A	3.62 %
Opitutales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales	2.17 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.45 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	1.45 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.72 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	30.43 %
Unclassified	root	N/A	3.62 %
Opitutaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	2.17 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1.45 %
actinobacterium LLX17	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium LLX17	0.72 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.72 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	30.43 %
Unclassified	root	N/A	3.62 %
Opitutus	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus	2.17 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1.45 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.72 %
actinobacterium LLX17	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium LLX17	0.72 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	30.43 %
Unclassified	root	N/A	3.62 %
Opitutus terrae	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → Opitutus terrae	2.17 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1.45 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.72 %
actinobacterium LLX17	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium LLX17	0.72 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001867\|JGI12627J18819_10354158	All Organisms → cellular organisms → Bacteria → Acidobacteria	594	Open in IMG/M
3300002910\|JGI25615J43890_1028472	All Organisms → cellular organisms → Bacteria → Acidobacteria	922	Open in IMG/M
3300003224\|JGI26344J46810_1003802	All Organisms → cellular organisms → Bacteria → Acidobacteria	1107	Open in IMG/M
3300004080\|Ga0062385_10812273	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300004092\|Ga0062389_102754473	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300005439\|Ga0070711_101249325	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300005445\|Ga0070708_100075914	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3034	Open in IMG/M
3300005450\|Ga0066682_10734051	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	603	Open in IMG/M
3300005518\|Ga0070699_100753783	All Organisms → cellular organisms → Bacteria → Acidobacteria	890	Open in IMG/M
3300005541\|Ga0070733_10055093	All Organisms → cellular organisms → Bacteria	2492	Open in IMG/M
3300005555\|Ga0066692_10543226	All Organisms → cellular organisms → Bacteria → Acidobacteria	736	Open in IMG/M
3300005557\|Ga0066704_10621197	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	692	Open in IMG/M
3300005560\|Ga0066670_10982050	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300005560\|Ga0066670_10982052	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300005574\|Ga0066694_10435344	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300005598\|Ga0066706_11473471	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	512	Open in IMG/M
3300005610\|Ga0070763_10846294	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium LLX17	542	Open in IMG/M
3300005921\|Ga0070766_10025727	All Organisms → cellular organisms → Bacteria → Acidobacteria	3161	Open in IMG/M
3300005921\|Ga0070766_10860057	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300006162\|Ga0075030_100561064	All Organisms → cellular organisms → Bacteria	907	Open in IMG/M
3300006797\|Ga0066659_11376291	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	589	Open in IMG/M
3300006806\|Ga0079220_10232218	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1090	Open in IMG/M
3300007788\|Ga0099795_10580168	All Organisms → cellular organisms → Bacteria → Acidobacteria	532	Open in IMG/M
3300009012\|Ga0066710_103645610	All Organisms → cellular organisms → Bacteria → Acidobacteria	580	Open in IMG/M
3300009038\|Ga0099829_10038521	All Organisms → cellular organisms → Bacteria → Acidobacteria	3462	Open in IMG/M
3300009038\|Ga0099829_10781103	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	793	Open in IMG/M
3300009088\|Ga0099830_10470748	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1022	Open in IMG/M
3300009137\|Ga0066709_100385272	All Organisms → cellular organisms → Bacteria → Acidobacteria	1939	Open in IMG/M
3300009615\|Ga0116103_1154477	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300010048\|Ga0126373_10108373	All Organisms → cellular organisms → Bacteria → Acidobacteria	2580	Open in IMG/M
3300010303\|Ga0134082_10009897	All Organisms → cellular organisms → Bacteria	3430	Open in IMG/M
3300010343\|Ga0074044_10315100	All Organisms → cellular organisms → Bacteria	1028	Open in IMG/M
3300010358\|Ga0126370_11183851	All Organisms → cellular organisms → Bacteria → Acidobacteria	710	Open in IMG/M
3300010360\|Ga0126372_12723547	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	546	Open in IMG/M
3300010360\|Ga0126372_13016505	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300010361\|Ga0126378_10045470	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4053	Open in IMG/M
3300010361\|Ga0126378_12069617	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300010376\|Ga0126381_104549250	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	535	Open in IMG/M
3300010379\|Ga0136449_101288816	All Organisms → cellular organisms → Bacteria	1140	Open in IMG/M
3300011270\|Ga0137391_10154782	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → Opitutus terrae	1998	Open in IMG/M
3300011270\|Ga0137391_11422533	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	539	Open in IMG/M
3300011271\|Ga0137393_11146846	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	660	Open in IMG/M
3300012096\|Ga0137389_10148706	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1915	Open in IMG/M
3300012189\|Ga0137388_11604121	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	586	Open in IMG/M
3300012198\|Ga0137364_10296809	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1199	Open in IMG/M
3300012203\|Ga0137399_10096546	All Organisms → cellular organisms → Bacteria → Acidobacteria	2277	Open in IMG/M
3300012203\|Ga0137399_10193686	All Organisms → cellular organisms → Bacteria	1647	Open in IMG/M
3300012203\|Ga0137399_11023857	All Organisms → cellular organisms → Bacteria → Acidobacteria	695	Open in IMG/M
3300012203\|Ga0137399_11038498	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	690	Open in IMG/M
3300012205\|Ga0137362_11522848	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	555	Open in IMG/M
3300012206\|Ga0137380_10111350	All Organisms → cellular organisms → Bacteria	2502	Open in IMG/M
3300012208\|Ga0137376_10350604	All Organisms → cellular organisms → Bacteria → Acidobacteria	1282	Open in IMG/M
3300012209\|Ga0137379_10774255	All Organisms → cellular organisms → Bacteria → Acidobacteria	865	Open in IMG/M
3300012361\|Ga0137360_10404010	All Organisms → cellular organisms → Bacteria → Acidobacteria	1152	Open in IMG/M
3300012362\|Ga0137361_11832864	All Organisms → cellular organisms → Bacteria → Acidobacteria	524	Open in IMG/M
3300012363\|Ga0137390_10935694	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300012363\|Ga0137390_11230874	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	695	Open in IMG/M
3300012582\|Ga0137358_10602653	All Organisms → cellular organisms → Bacteria → Acidobacteria	737	Open in IMG/M
3300012582\|Ga0137358_10603449	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	736	Open in IMG/M
3300012683\|Ga0137398_10117714	All Organisms → cellular organisms → Bacteria	1692	Open in IMG/M
3300012683\|Ga0137398_10118255	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1689	Open in IMG/M
3300012685\|Ga0137397_10003484	All Organisms → cellular organisms → Bacteria	10940	Open in IMG/M
3300012917\|Ga0137395_10368971	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1024	Open in IMG/M
3300012918\|Ga0137396_10154397	All Organisms → cellular organisms → Bacteria	1673	Open in IMG/M
3300012918\|Ga0137396_10202767	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1458	Open in IMG/M
3300012918\|Ga0137396_10665891	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	768	Open in IMG/M
3300012923\|Ga0137359_10338163	All Organisms → cellular organisms → Bacteria	1339	Open in IMG/M
3300012923\|Ga0137359_11280978	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	621	Open in IMG/M
3300012923\|Ga0137359_11590546	All Organisms → cellular organisms → Bacteria → Acidobacteria	541	Open in IMG/M
3300012924\|Ga0137413_11331133	All Organisms → cellular organisms → Bacteria → Acidobacteria	578	Open in IMG/M
3300012925\|Ga0137419_11202663	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	634	Open in IMG/M
3300012925\|Ga0137419_11734125	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	533	Open in IMG/M
3300012927\|Ga0137416_10172279	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1715	Open in IMG/M
3300012927\|Ga0137416_11091195	All Organisms → cellular organisms → Bacteria → Acidobacteria	716	Open in IMG/M
3300012927\|Ga0137416_11266352	All Organisms → cellular organisms → Bacteria → Acidobacteria	665	Open in IMG/M
3300012927\|Ga0137416_11933498	All Organisms → cellular organisms → Bacteria → Acidobacteria	540	Open in IMG/M
3300012944\|Ga0137410_11500709	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	588	Open in IMG/M
3300012944\|Ga0137410_11655877	All Organisms → cellular organisms → Bacteria → Acidobacteria	562	Open in IMG/M
3300012976\|Ga0134076_10589060	All Organisms → cellular organisms → Bacteria → Acidobacteria	518	Open in IMG/M
3300014157\|Ga0134078_10095993	All Organisms → cellular organisms → Bacteria → Acidobacteria	1102	Open in IMG/M
3300014157\|Ga0134078_10131421	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	968	Open in IMG/M
3300014157\|Ga0134078_10206190	All Organisms → cellular organisms → Bacteria → Acidobacteria	804	Open in IMG/M
3300014166\|Ga0134079_10269117	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	744	Open in IMG/M
3300015054\|Ga0137420_1369041	All Organisms → cellular organisms → Bacteria	1560	Open in IMG/M
3300015245\|Ga0137409_11561150	All Organisms → cellular organisms → Bacteria → Acidobacteria	510	Open in IMG/M
3300015264\|Ga0137403_10982893	Not Available	691	Open in IMG/M
3300016404\|Ga0182037_10616796	All Organisms → cellular organisms → Bacteria	922	Open in IMG/M
3300017822\|Ga0187802_10152178	All Organisms → cellular organisms → Bacteria → Acidobacteria	884	Open in IMG/M
3300017928\|Ga0187806_1360385	Not Available	521	Open in IMG/M
3300017961\|Ga0187778_10526567	All Organisms → cellular organisms → Bacteria → Acidobacteria	787	Open in IMG/M
3300017975\|Ga0187782_10121140	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → Opitutus terrae	1934	Open in IMG/M
3300017995\|Ga0187816_10143921	All Organisms → cellular organisms → Bacteria	1031	Open in IMG/M
3300018057\|Ga0187858_10406801	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300018060\|Ga0187765_10130182	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1402	Open in IMG/M
3300018086\|Ga0187769_10139596	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → Opitutus terrae	1768	Open in IMG/M
3300018482\|Ga0066669_10809104	All Organisms → cellular organisms → Bacteria → Acidobacteria	831	Open in IMG/M
3300020002\|Ga0193730_1100485	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	806	Open in IMG/M
3300020579\|Ga0210407_10352883	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1151	Open in IMG/M
3300020580\|Ga0210403_10259042	All Organisms → cellular organisms → Bacteria	1427	Open in IMG/M
3300020582\|Ga0210395_11124347	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300021088\|Ga0210404_10734983	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	563	Open in IMG/M
3300021168\|Ga0210406_11126927	All Organisms → cellular organisms → Bacteria → Acidobacteria	576	Open in IMG/M
3300021170\|Ga0210400_10279140	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1369	Open in IMG/M
3300021170\|Ga0210400_10720339	All Organisms → cellular organisms → Bacteria → Acidobacteria	820	Open in IMG/M
3300021401\|Ga0210393_10502421	All Organisms → cellular organisms → Bacteria	990	Open in IMG/M
3300021404\|Ga0210389_10059892	All Organisms → cellular organisms → Bacteria	2918	Open in IMG/M
3300021405\|Ga0210387_10856746	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300021407\|Ga0210383_11139310	Not Available	657	Open in IMG/M
3300021420\|Ga0210394_10344062	All Organisms → cellular organisms → Bacteria	1310	Open in IMG/M
3300021432\|Ga0210384_11847741	Not Available	510	Open in IMG/M
3300021433\|Ga0210391_11050883	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	633	Open in IMG/M
3300021433\|Ga0210391_11077524	All Organisms → cellular organisms → Bacteria → Acidobacteria	624	Open in IMG/M
3300021475\|Ga0210392_10989290	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	630	Open in IMG/M
3300021560\|Ga0126371_10292944	All Organisms → cellular organisms → Bacteria → Acidobacteria	1752	Open in IMG/M
3300021560\|Ga0126371_12786742	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300021560\|Ga0126371_13462966	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	533	Open in IMG/M
3300025439\|Ga0208323_1003929	All Organisms → cellular organisms → Bacteria	4613	Open in IMG/M
3300026523\|Ga0209808_1027622	All Organisms → cellular organisms → Bacteria → Acidobacteria	2761	Open in IMG/M
3300026527\|Ga0209059_1175297	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	749	Open in IMG/M
3300026527\|Ga0209059_1176971	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	743	Open in IMG/M
3300027432\|Ga0209421_1054129	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300027660\|Ga0209736_1000245	All Organisms → cellular organisms → Bacteria → Acidobacteria	17589	Open in IMG/M
3300027671\|Ga0209588_1108399	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	892	Open in IMG/M
3300027701\|Ga0209447_10090559	All Organisms → cellular organisms → Bacteria	840	Open in IMG/M
3300027846\|Ga0209180_10021613	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3411	Open in IMG/M
3300027879\|Ga0209169_10273776	All Organisms → cellular organisms → Bacteria	886	Open in IMG/M
3300027884\|Ga0209275_10101891	All Organisms → cellular organisms → Bacteria	1470	Open in IMG/M
3300027908\|Ga0209006_10085733	All Organisms → cellular organisms → Bacteria	2800	Open in IMG/M
3300029636\|Ga0222749_10464298	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	680	Open in IMG/M
3300029636\|Ga0222749_10615464	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	594	Open in IMG/M
3300031090\|Ga0265760_10086508	All Organisms → cellular organisms → Bacteria	976	Open in IMG/M
3300031754\|Ga0307475_10415374	All Organisms → cellular organisms → Bacteria	1081	Open in IMG/M
3300031795\|Ga0318557_10255007	All Organisms → cellular organisms → Bacteria → Acidobacteria	804	Open in IMG/M
3300031846\|Ga0318512_10374781	All Organisms → cellular organisms → Bacteria → Acidobacteria	714	Open in IMG/M
3300032044\|Ga0318558_10031110	All Organisms → cellular organisms → Bacteria → Acidobacteria	2252	Open in IMG/M
3300033004\|Ga0335084_12039532	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300033289\|Ga0310914_11578350	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	560	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.03%
Aquatic	Environmental → Aquatic	7.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	92.03%
Freshwater	Environmental → Aquatic → Freshwater	7.25%
Sediment	Environmental → Aquatic → Sediment	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	78.99%
Loam	Environmental → Terrestrial → Soil → Loam	8.70%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.25%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.35%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	49.28%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	17.39%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	10.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.52%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.35%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.62%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.17%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.17%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.45%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	34.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.97%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.35%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.62%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.90%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.90%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.17%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.17%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.45%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.72%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.72%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.72%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.72%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.72%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.72%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002910	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm	Environmental	Open in IMG/M
3300003224	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009615	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_100	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025439	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_100 (SPAdes)	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026527	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)	Environmental	Open in IMG/M
3300027432	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027660	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12627J18819_103541582	3300001867	Forest Soil	MRRRLIRSALILLLLPPLLAALAGWLVAPWYLHPIRRELTPDLVREADASFTIT
JGI25615J43890_10284723	3300002910	Grasslands Soil	MHRRLIRIALILLLLPPLLAAVAGWLVAPAYLHPIRRELT
JGI26344J46810_10038021	3300003224	Bog Forest Soil	MPKHVHPIRRRLIRIALILLLFPPLLAAIGGWLAGPTFLH
Ga0062385_108122732	3300004080	Bog Forest Soil	MPTHAHPVRRGLIRIAIILLFFPPLLVAVGGWLAGPTFLHPLRRELTP
Ga0062389_1027544731	3300004092	Bog Forest Soil	MTLRRRLVRILLILLLLPPILAGIAGWLVAPGFLHPIRRELTPDLIRE
Ga0070711_1012493251	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MTLRRRLIRILLILLLFPPLLAGIAGWLVAPSFLHPIRRALTPDLIREADAS
Ga0070708_1000759145	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MRRRLIRIALILLFFPPLLAAVAGWFAGPAFLHPIRRELTPDLIREADASF
Ga0066682_107340511	3300005450	Soil	MRRLIRIALILLLFPPLLAAVAGWLSGPAFLHPIRRELTPDLI
Ga0070699_1007537832	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MRRLARILLVLLLFPPVLAAAVGWLVGPAFLHPFRRELTPDLIRHADAIFSE
Ga0070733_100550933	3300005541	Surface Soil	MTLRRRLIRILLILLLLPPILAGIAGWLVAPGFLRPIRRELTPDLIREAD
Ga0066692_105432262	3300005555	Soil	MRRRLLRIALILLFFPPLLAAVAGWLAGPAFLHPIR
Ga0066704_106211971	3300005557	Soil	MRRRLIRIALILLLFPPLLAAVAGWLAAPAFLHPIRRELTPDLIR
Ga0066670_109820501	3300005560	Soil	MRRRLIRIALILLLLPPLLAAVAGWLVAPWYLHPIRRELTPDL
Ga0066670_109820521	3300005560	Soil	MRKSLIRIALILLLLPPLLAAVAGWLVAPWYLHPIRRELTPDL
Ga0066694_104353442	3300005574	Soil	MRKSLIRIALILLLLPPLLAAVAGWLVAPWYLHPIRRELTPDLVREADASFALTR
Ga0066706_114734712	3300005598	Soil	MRRLIRIALILLLFPPLLAAVAGWLSGPAFLHPIRRELTPDLIREAEASFL
Ga0070763_108462941	3300005610	Soil	MTLRRRLIRILLILLLLPPLLAGIAGWLVAPGFLHPIRRDLTPDLVREADA
Ga0070766_100257271	3300005921	Soil	MATTLPRRIIRILLILLLLPPILAGLAGWLVAPGFLH
Ga0070766_108600571	3300005921	Soil	MALGRRLVRILLILLLLPPILAGVAGWLAAPGFVHPMRRDLTP
Ga0075030_1005610642	3300006162	Watersheds	LRRLIRIALILLLFPPLLSAIGGWLFAPAFLTPLR
Ga0066659_113762912	3300006797	Soil	MRRLIRIALILLLFPPLLAAVGGWLSGPAFLHPIRREL
Ga0079221_117722592	3300006804	Agricultural Soil	MPRRLIRVLCYLLLLPPAIAAIAGWFAAPTFLHPIRRAL
Ga0079220_102322181	3300006806	Agricultural Soil	MRRRLIRIALILLLLPPLLAALAGWMVAPWYLKPIRRE
Ga0099795_105801681	3300007788	Vadose Zone Soil	MRRLIRIALILLLLPPLLSAVAGWLAGPAFLHPIRRELTPDLVREADASFAF
Ga0066710_1036456101	3300009012	Grasslands Soil	MRRRLLRIALILLLFPPLLAAVAGWLAGPAFLHPIRRALTPDPIR
Ga0099829_100385213	3300009038	Vadose Zone Soil	MRRRLLRIALILLLFPPLLAAVAGWLAGPAFLHPIRRELTPDLIRE
Ga0099829_107811031	3300009038	Vadose Zone Soil	MSRRLIRIALIILLFPPILSAVAGWLAGPAFLHPIRRELTPDLIREADASL
Ga0099830_104707481	3300009088	Vadose Zone Soil	MRRRLIRIALILLLFPPLLAAVAGWLAAPAFLHPIRRELTPDLI
Ga0066709_1003852721	3300009137	Grasslands Soil	MRRRLIHIALILLLVPPLLAAVAGWLSAPAFLHPIRRELT
Ga0116103_11544772	3300009615	Peatland	MRTRRRLFRILLILLLFPPVFAGVAGWLAAPAFLHPMRRPLTPDLVVEA
Ga0126373_101083731	3300010048	Tropical Forest Soil	VILLLLPPLLAAVAGWIVAPWYLHPIRRELTPDLI
Ga0134082_100098975	3300010303	Grasslands Soil	MRRRLIRIALILLLLPPLLAAVAGWLVAPWYLHPIRR
Ga0074044_103151002	3300010343	Bog Forest Soil	MRRRLLRILLILLLFPPAFAAVAGWLAAVAFLHPIRRPLTPDLVVQADVSFA
Ga0126370_111838511	3300010358	Tropical Forest Soil	MRKRLIRIALILLLFPPLVAAIAGWLVAPWYLKPIRRELTADLIREADS
Ga0126372_127235472	3300010360	Tropical Forest Soil	MRSRLTRIAPILLLFPPLVAAVAGWMVAPWYLKPIRRELTADLI
Ga0126372_130165051	3300010360	Tropical Forest Soil	MRRRLIRIVLILLLLPPLLAAVAGWLVAPWYLHPIRRELTPDLIR
Ga0126378_100454701	3300010361	Tropical Forest Soil	MRRRLIRIALILLLLPPLLAAVAGWIVAPWYLHPIRR
Ga0126378_120696172	3300010361	Tropical Forest Soil	MPRRVIRVLVVLLVTPPLTAAVAGWLVAPAYLHPIRRELSPDLIRGADATFAEIHAA
Ga0126381_1045492501	3300010376	Tropical Forest Soil	MVILLFLPPVLAAVGGWLVAPAYLDPIRRELTPDLIREADVSF
Ga0136449_1012888161	3300010379	Peatlands Soil	MRRRLLRILLILVLFPPAFAAVGGWLAAPAFLHPIRRPL
Ga0137391_101547821	3300011270	Vadose Zone Soil	MRRLYRILLILLLFPPLLAAAAGWLSGPAFLHPIRRELT
Ga0137391_114225332	3300011270	Vadose Zone Soil	MRHGLIRIALILLLFPPLLAAVAGWFAGPAFLHPIRRELTPDLIR
Ga0137393_111468461	3300011271	Vadose Zone Soil	MRRRLIRIALILLLFPPFLAALAGWLVGPAYLHPIRRELTPDLIREADASFVV
Ga0137389_101487061	3300012096	Vadose Zone Soil	MRHTLIRIALILLLFPPLLAAVAGWFAGPEFLHPIRRE
Ga0137388_116041211	3300012189	Vadose Zone Soil	MSRRLIRIALIILLFPPLLSAVAGWLAGPAFLNPIRREL
Ga0137364_102968093	3300012198	Vadose Zone Soil	MRRLIRIALILLLFPPLLAAVAGWLSGPAFLHPIRRELTPDLIR
Ga0137399_100965461	3300012203	Vadose Zone Soil	MRRRLIRIALILLLFPPLLAAVAGLLAGPAFLHPIRRALTPDLIREADA
Ga0137399_101936862	3300012203	Vadose Zone Soil	MRRRLIRIALILLFFPPLLAAVAGWLAAPAFLHPIRRE
Ga0137399_110238571	3300012203	Vadose Zone Soil	MRRRLIRIALILLLFPPLLAAVAGWLVGPAYLHPIRRELTPDLIREANAS
Ga0137399_110384981	3300012203	Vadose Zone Soil	MRHGLIRIALILLLFPPLLAAVAGWFAGPAFLHPIRRELTPDLIRE
Ga0137362_115228482	3300012205	Vadose Zone Soil	MRCRLIRIALILLLFPPFLAALAGWLVGPAYLHPIRRELTPDL
Ga0137380_101113504	3300012206	Vadose Zone Soil	MRRLIRIALILLLFPPLLAAVAGWLSGPAFLHPIRREL
Ga0137376_103506041	3300012208	Vadose Zone Soil	MYRRLIRIALILLLLPPLLAAVAGWLVAPAYLHPIRRELTPDLIREADAS
Ga0137379_107742553	3300012209	Vadose Zone Soil	MRRLYRILLILLLFPPILAAAAGWLSGPAFLHPIRRELSPD
Ga0137360_104040101	3300012361	Vadose Zone Soil	MRRRLIRIALILLLFPPLLSSVVGWLAGPAFLRPIRRELTPD
Ga0137361_118328641	3300012362	Vadose Zone Soil	MRRRLIRIALILLLFPPVLAAVAGWVAAPAFLHPIRRELTPDLIREADAS
Ga0137390_109356941	3300012363	Vadose Zone Soil	MRRALRFSLKLLIFPPLFAAIAGWLVAPAYLHPIRRALTPDLIQQAD
Ga0137390_112308742	3300012363	Vadose Zone Soil	MRRRLLRIALILLLFPSLLAAVAGWLAGPAFLHPIRRELTPDLIREA
Ga0137358_106026531	3300012582	Vadose Zone Soil	MRRRLIRIALILLLFPPLLAALAGWLVGPAYLHPIRRELTPDLIREADASLAVSGGH
Ga0137358_106034491	3300012582	Vadose Zone Soil	MRRRLIRIALILLLFPPFLAALAGWLVGPAYLHPIRRELTPDLI
Ga0137398_101177143	3300012683	Vadose Zone Soil	MRRRPIRIVMILLFFPPLLAAVAGWLVGPAFLHPIRRELTSDLIRE
Ga0137398_101182552	3300012683	Vadose Zone Soil	MRHGLIRIALILLLFPPLLAAVAGWFAGPAFLHPIR
Ga0137397_1000348411	3300012685	Vadose Zone Soil	MRRRLIRIALTLLLFPPLLAAVAGWLAGPAFLHPIRRELTPDLIRE
Ga0137395_103689711	3300012917	Vadose Zone Soil	MRRLIRIALTFLLFPPLLAAVAGWLSGPAFIHPIRRELTPALIREAAASFLVT
Ga0137396_101543972	3300012918	Vadose Zone Soil	MRRRLIRIALILLFFPPLLAAVAGWLAAPAFLHPIRR
Ga0137396_102027671	3300012918	Vadose Zone Soil	MRHRLLRTALILLLFPSLLAAVAGWLAGPAFLHPIRRELTPDLIREADAS
Ga0137396_106658912	3300012918	Vadose Zone Soil	MRRRLIRIALILLLFPPLLSSVVGWLAGPAFLHPIRRELTPD
Ga0137359_103381632	3300012923	Vadose Zone Soil	MRRRLIRIALILLLFPPFLAALAGWLVGPAYLHPIRRELAP
Ga0137359_112809781	3300012923	Vadose Zone Soil	MRRRLIRIALILLLFPPLLAALAGWLVGPAYLHPIRRELT
Ga0137359_115905462	3300012923	Vadose Zone Soil	MRRRLIRIALILLLFPPLLAALAGWLVGPAYLHPIRRELTPGLIREAD
Ga0137413_113311332	3300012924	Vadose Zone Soil	MRRRLIRIALILLLFPPPLAGVAGWVAAPAFRHPIRRELT
Ga0137419_112026631	3300012925	Vadose Zone Soil	MRRLIRIALILLLFPPLLAAVAGWLSAPAFLHPIRRELTPDLLREAEASFLV
Ga0137419_117341251	3300012925	Vadose Zone Soil	MRRRLIRIALILLLFPPLLAAVAGWLSGPAFLHPIRRE
Ga0137416_101722791	3300012927	Vadose Zone Soil	MRRRFLRIALILLVFPPLLAAVAGWFAGPAFLHPIRRELTPDLIREADAS
Ga0137416_110911951	3300012927	Vadose Zone Soil	MRRRLIRIVLILLLFPPLAAAVAGWLVGPSFLHPIRRELTPD
Ga0137416_112663521	3300012927	Vadose Zone Soil	MRRRFLRIARILLVFPPLLAAVAGWFAGPAFLHPIRRELTPDLIREADAS
Ga0137416_119334981	3300012927	Vadose Zone Soil	MRRRLIRIALILLLFPPLLSSVVGWLAGPAFLRPIRRELTPDLIREAD
Ga0137410_115007091	3300012944	Vadose Zone Soil	MRRRLIRIVLILLLFPPFLAALAGWLVGPAYLHPIRRELTPDLIC
Ga0137410_116558771	3300012944	Vadose Zone Soil	MRRRLIRIALILLLFPPFLAALAGWLVGPAYLHPIRRELTRDLIREADASFAVS
Ga0134076_105890601	3300012976	Grasslands Soil	MRRRLIRIALILLLFPPFLAALAGWLVGPAYLHPIRRELTPDLIREADASFAVSG*
Ga0134078_100959933	3300014157	Grasslands Soil	MRRRLIRIALILLLLPPLLAAVAGWLVAPWYLHPIR
Ga0134078_101314211	3300014157	Grasslands Soil	MRRLIRIALILLLFPPLLAAVAGWLSGPAFLHPIRRELTPDLIREA
Ga0134078_102061901	3300014157	Grasslands Soil	MYRRLLRIALILLLLPPLLAAVAGWLVAPAYLHPIRRELTPDLIREAD
Ga0134079_102691172	3300014166	Grasslands Soil	MRRLIRIALILLLFPPLLAAVGGWLSGPAFLHPIRRELTPDLIREAEASFLV
Ga0137420_13690412	3300015054	Vadose Zone Soil	MRRRLIRIVLILLLFPPFLAALAGWLVGPAYLHPIRRELTPI*
Ga0137409_115611501	3300015245	Vadose Zone Soil	MRRRLIRIALILLLFPPFLAALAGWLVGPAYLHPIRRELTRDLIREADASFAVSG
Ga0137403_109828931	3300015264	Vadose Zone Soil	MRRRLIRIALILLLFPPLAAAVAGVLVGPAFIHAI
Ga0182037_106167961	3300016404	Soil	MRILVILLGTPPLTAAVAGWLVAPAYLHPIRRELSPDLIR
Ga0187802_101521781	3300017822	Freshwater Sediment	MTLRRRLVRVLLILLLFPPLLAGIAGWLVAPNFLHPIRRELTPDLIRE
Ga0187806_13603852	3300017928	Freshwater Sediment	MRRRLIRIAVILLFFPPLAAAVAGWLVGLAYLHPIRRE
Ga0187778_105265671	3300017961	Tropical Peatland	MGRRLIRIAIILLFFPPLAAAVAGWLVGPAYLHPIRRELT
Ga0187782_101211401	3300017975	Tropical Peatland	MRLPRQLLRIFLILVLFPPALAAVAGWMAAPAFLHPIRRPLMPDLVVEA
Ga0187816_101439211	3300017995	Freshwater Sediment	MRRRLLRILLILVLFPPAFAAVAGWLAAPAFLHPIRRPLTPDLVVEADVSF
Ga0187858_104068011	3300018057	Peatland	MGLRRRLFRIFLILLLFPPLFAGVAGWLAAPAFLHPMRRPLTPDLVAEADA
Ga0187765_101301821	3300018060	Tropical Peatland	MSLKRRLIRIALILLLFPPLLAGIAGWIIGPSFLHPIRRELTGESIREA
Ga0187769_101395961	3300018086	Tropical Peatland	MRLRRRILRILLILLLFPPAFAAVAGWLAAPAFLHPMRR
Ga0066669_108091041	3300018482	Grasslands Soil	MRRRLIRIALILLLLPPLLAAVAGWLSAQAFLHPIRREVTPDLVREA
Ga0193730_11004852	3300020002	Soil	MRRRLLRIALILLLFPPLLAAVAGWLAGPAFLHPIRR
Ga0210407_103528832	3300020579	Soil	MKMMKMTLRLRIIRILLILLLLPPILAGAAGWLIAPGFLHPVRRELTPDLIR
Ga0210403_102590421	3300020580	Soil	MTLSRRLIRILLILLLLPPILAGIAGWLVAPGFLHPIRRELTP
Ga0210395_111243472	3300020582	Soil	MRLLRVLRILVLFPALLAGVAGWFAAPAFLHPIRRALTPDLIR
Ga0210404_107349831	3300021088	Soil	MRRRLIRIALILLFFPPLLAAVGGWLAGPAFLHPV
Ga0210406_111269271	3300021168	Soil	MTLRRRLIRILLILLLLPPILAGVAGWLVAPGFLHPIRRELTPDLI
Ga0210400_102791402	3300021170	Soil	MRRRLIRIALILLFFPPLLAAVGGWLAGPAFLHPVRRELTPDL
Ga0210400_107203391	3300021170	Soil	MRRQLIRIALILLLFPPILAAVAGWLSGPAFLHPIRRELTPDLVREADASFAV
Ga0210393_105024212	3300021401	Soil	MATTLRRRILRILLILLLLPPILAGVAGWLVAPGFLHPVRRELTLDLIREADA
Ga0210389_100598924	3300021404	Soil	MRPVSRRLIRIVPILVLFPPLLAAVAGWFVAPTYLH
Ga0210387_108567461	3300021405	Soil	MTLTRRLLRILVILLLFPPLLAAVAGWLVAPNFLH
Ga0210383_111393101	3300021407	Soil	MTLRRRLIRILLILLLLPPILAGIAGWLVAPGFLHPIR
Ga0210394_103440622	3300021420	Soil	MTLRRRLIRILLILLLLPPILAGVAGWLAAPGFLHPIRRDLTPD
Ga0210384_118477411	3300021432	Soil	MKMTLRLRIIRILLILLLLPPILAGVAGWLVAPGFLHPVRRDLT
Ga0210391_110508832	3300021433	Soil	MRRRPIRIALILLLFPPILAAIGGWLAGPAFLHPIRRRL
Ga0210391_110775242	3300021433	Soil	MTLRRRLIRILLILLLLPPILAAIAGWLVAPGFLHPIRRELTPDLIREA
Ga0210392_109892901	3300021475	Soil	MTLRRRLVRILIILLVFPPLLAAVAGWLVGPGFLHPIRREFTPELVREADTYFA
Ga0126371_102929442	3300021560	Tropical Forest Soil	MLRALMGRRILRVMLILLLLPPVLAAVAGWLVAPAYLHPIRRDLTPDLIR
Ga0126371_127867421	3300021560	Tropical Forest Soil	VDPGRETRIRRRLIRIALILLLLPPLLAALAGWIVAPWYLHPIRRELTPDLIREADAS
Ga0126371_134629661	3300021560	Tropical Forest Soil	MTLKRRLVRIALILLLFPPLLAAVAGWIIGPSFLHPIRRELTPDLI
Ga0208323_10039291	3300025439	Peatland	MRTRRRLFRILLILLLFPPVFAGVAGWLAAPAFLHPMRRPLTPDLVVEAD
Ga0209808_10276222	3300026523	Soil	MRRRILRVMLILLLLPPVLAAVAGWLVAPAYLHPIRRELTPDLIRGADA
Ga0209059_11752972	3300026527	Soil	MSKRLIRIALILLLLPPILAAMAGWLVAPAYLHPI
Ga0209059_11769712	3300026527	Soil	MRKRLIRIALILLLLPPILAAMAGWLVAPAYLHPI
Ga0209421_10541291	3300027432	Forest Soil	MHRPIRIVLILLLFPPFVAAVLGWFVAPAFLHPILRPLTPDLVQQADAGL
Ga0209736_10002451	3300027660	Forest Soil	MTLRRRLIRILLILLLFPPILAGVAGWLAAPGFLHP
Ga0209588_11083991	3300027671	Vadose Zone Soil	MRRRLIRIALILLLFPPFLAALAGWLVGPAYLHPIR
Ga0209447_100905592	3300027701	Bog Forest Soil	MPTHAHPVRRGLIRIAIILLFFPPLLVAVGGWLAGPTFLHPLRRELT
Ga0209180_100216133	3300027846	Vadose Zone Soil	MRRRLLRIALILLLFPPLLAAVAGWLAGPAFLHPIRRELTPDLIREADASF
Ga0209169_102737762	3300027879	Soil	MTLRRRLIRILLILLLLPPILAGIAGWLVAPNFLHPIRRE
Ga0209275_101018914	3300027884	Soil	MTLRRRLIRILLILLLLPPILAGVAGWLVAPNFLHPIRRELTPDLIHE
Ga0209006_100857335	3300027908	Forest Soil	MALRRHLIRILLILLLLPPILAGVAGWLAAPGFLHPLRRDLTPDLI
Ga0222749_104642981	3300029636	Soil	MTLRRRLVRILIILLFFPPLLAAVAGWLVGPGFLHPIRRE
Ga0222749_106154641	3300029636	Soil	MRRRLIRIALILLFFPPLLAAVGGWLAGPAFLHPVR
Ga0265760_100865081	3300031090	Soil	MKPSAHPVRRRLVRIAVILLLFPPLLAAVGGWMAGPTFLHPIDRELT
Ga0307475_104153742	3300031754	Hardwood Forest Soil	MRRRLIRIALILLFFPPLAAAVAGWLVGPAFLHPIRRELTPD
Ga0318557_102550072	3300031795	Soil	MRRRIIRVMLILLLLPPVLAAVAGWLVAPAYLHPIRRELTPDLIREADASFAV
Ga0318512_103747811	3300031846	Soil	MRRRIIRVMLILLLLPPVLAAVAGWLVAPAYLHPIRRELTPDLIR
Ga0318558_100311101	3300032044	Soil	MRRRIIRVMLILLLLPPVLAAVAGWLVAPAYLHPIRRELTP
Ga0335084_120395322	3300033004	Soil	MRRSLRILLIVFLFPPLLAAVAGWMAGPGFLHPIRRELTPDMI
Ga0310914_115783501	3300033289	Soil	MLILLLLPPVLAAVTGWLVAPAYLDPVRRGLTPDLIREADVS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F055570

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences