Metagenome Family F055630

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F055630
Family Type	Metagenome
Number of Sequences	138
Average Sequence Length	39 residues
Representative Sequence	MSATPDSTLANPEQLIADLQRQLAEREAELAECKAERDEALE
Number of Associated Samples	82
Number of Associated Scaffolds	138

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	97.79 %
% of genes near scaffold ends (potentially truncated)	92.03 %
% of genes from short scaffolds (< 2000 bps)	91.30 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (62.319 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (49.275 % of family members)
Environment Ontology (ENVO)	Unclassified (79.710 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.275 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.86% β-sheet: 0.00% Coil/Unstructured: 57.14%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 138 Family Scaffolds
PF13751	DDE_Tnp_1_6	2.17
PF00072	Response_reg	1.45
PF00891	Methyltransf_2	1.45
PF04986	Y2_Tnp	1.45
PF03692	CxxCxxCC	1.45
PF00239	Resolvase	1.45
PF00999	Na_H_Exchanger	1.45
PF02518	HATPase_c	1.45
PF01548	DEDD_Tnp_IS110	1.45
PF07040	DUF1326	1.45
PF00536	SAM_1	1.45
PF13561	adh_short_C2	0.72
PF04392	ABC_sub_bind	0.72
PF08028	Acyl-CoA_dh_2	0.72
PF09391	DUF2000	0.72
PF02538	Hydantoinase_B	0.72
PF00903	Glyoxalase	0.72
PF13602	ADH_zinc_N_2	0.72
PF08388	GIIM	0.72
PF00378	ECH_1	0.72
PF00589	Phage_integrase	0.72
PF00180	Iso_dh	0.72
PF08031	BBE	0.72
PF01590	GAF	0.72
PF07589	PEP-CTERM	0.72
PF02796	HTH_7	0.72
PF04828	GFA	0.72
PF06559	DCD	0.72
PF03928	HbpS-like	0.72
PF13193	AMP-binding_C	0.72
PF13185	GAF_2	0.72

COG ID	Name	Functional Category	% Frequency in 138 Family Scaffolds
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	1.45
COG0146	N-methylhydantoinase B/oxoprolinase/acetone carboxylase, alpha subunit	Amino acid transport and metabolism [E]	1.45
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	1.45
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	1.45
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	1.45
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	1.45
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	1.45
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.45
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	1.45
COG5588	Uncharacterized conserved protein, DUF1326 domain	Function unknown [S]	1.45
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.72
COG0717	dCTP deaminase	Nucleotide transport and metabolism [F]	0.72
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.72
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.72
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.32 %
All Organisms	root	All Organisms	37.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.32 %
cellular organisms	root	All Organisms → cellular organisms	37.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.32 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	37.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.32 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	26.81 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.72 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.32 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	21.74 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.72 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.72 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.32 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7.97 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	3.62 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2.90 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.72 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.72 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.72 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.32 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4.35 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.62 %
unclassified Terriglobales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales	0.72 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.72 %
Elioraeaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Elioraeaceae	0.72 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.72 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.72 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.72 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.72 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.32 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.35 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.62 %
Elioraea	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Elioraeaceae → Elioraea	0.72 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.72 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	0.72 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.72 %
Methylocella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella	0.72 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.72 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.72 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.32 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.62 %
Methylocella tundrae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella tundrae	0.72 %
Bradyrhizobium jicamae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	0.72 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.72 %
Microvirga tunisiensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga tunisiensis	0.72 %
Elioraea rosea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Elioraeaceae → Elioraea → Elioraea rosea	0.72 %
unclassified Sphingomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas	0.72 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.72 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.72 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.72 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.32 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.62 %
Sphingomonas sp. JC676	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. JC676	0.72 %
Methylocella tundrae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella tundrae	0.72 %
Bradyrhizobium jicamae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	0.72 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.72 %
Microvirga tunisiensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga tunisiensis	0.72 %
Elioraea rosea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Elioraeaceae → Elioraea → Elioraea rosea	0.72 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.72 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.72 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.72 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005177\|Ga0066690_10536298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	784	Open in IMG/M
3300005764\|Ga0066903_104182892	Not Available	772	Open in IMG/M
3300005764\|Ga0066903_107415014	Not Available	566	Open in IMG/M
3300005937\|Ga0081455_10944383	Not Available	535	Open in IMG/M
3300006755\|Ga0079222_11481102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	634	Open in IMG/M
3300009162\|Ga0075423_10227667	Not Available	1954	Open in IMG/M
3300010048\|Ga0126373_10033119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4487	Open in IMG/M
3300010361\|Ga0126378_10869591	Not Available	1009	Open in IMG/M
3300010361\|Ga0126378_12568432	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300010361\|Ga0126378_13175655	Not Available	523	Open in IMG/M
3300010373\|Ga0134128_11484752	Not Available	746	Open in IMG/M
3300010376\|Ga0126381_100793671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1359	Open in IMG/M
3300010376\|Ga0126381_101419546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1003	Open in IMG/M
3300012971\|Ga0126369_11257911	Not Available	830	Open in IMG/M
3300013306\|Ga0163162_12004927	Not Available	663	Open in IMG/M
3300016270\|Ga0182036_10172934	Not Available	1559	Open in IMG/M
3300016270\|Ga0182036_11936833	Not Available	500	Open in IMG/M
3300016294\|Ga0182041_10447233	Not Available	1110	Open in IMG/M
3300016294\|Ga0182041_10796473	Not Available	844	Open in IMG/M
3300016319\|Ga0182033_10340306	Not Available	1251	Open in IMG/M
3300016341\|Ga0182035_10204350	Not Available	1565	Open in IMG/M
3300016341\|Ga0182035_11567119	Not Available	594	Open in IMG/M
3300016341\|Ga0182035_12093749	Not Available	514	Open in IMG/M
3300016341\|Ga0182035_12171426	Not Available	503	Open in IMG/M
3300016357\|Ga0182032_10383351	Not Available	1133	Open in IMG/M
3300016357\|Ga0182032_10567957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	940	Open in IMG/M
3300016357\|Ga0182032_10950765	Not Available	732	Open in IMG/M
3300016371\|Ga0182034_10151976	All Organisms → cellular organisms → Bacteria → Proteobacteria	1740	Open in IMG/M
3300016387\|Ga0182040_11120661	Not Available	660	Open in IMG/M
3300016404\|Ga0182037_11326650	Not Available	635	Open in IMG/M
3300016422\|Ga0182039_10216242	All Organisms → cellular organisms → Bacteria	1539	Open in IMG/M
3300016422\|Ga0182039_11937513	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300016445\|Ga0182038_11524952	Not Available	600	Open in IMG/M
3300016445\|Ga0182038_12199339	Not Available	500	Open in IMG/M
3300020583\|Ga0210401_10849670	Not Available	772	Open in IMG/M
3300021178\|Ga0210408_11139938	Not Available	598	Open in IMG/M
3300021178\|Ga0210408_11368035	Not Available	534	Open in IMG/M
3300021560\|Ga0126371_10561631	Not Available	1290	Open in IMG/M
3300021560\|Ga0126371_11368659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	839	Open in IMG/M
3300021560\|Ga0126371_12613675	Not Available	612	Open in IMG/M
3300021560\|Ga0126371_12645614	Not Available	608	Open in IMG/M
3300021560\|Ga0126371_12847464	Not Available	586	Open in IMG/M
3300021560\|Ga0126371_12972127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	574	Open in IMG/M
3300021560\|Ga0126371_13595412	Not Available	523	Open in IMG/M
3300025915\|Ga0207693_10452775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1003	Open in IMG/M
3300027874\|Ga0209465_10546635	Not Available	576	Open in IMG/M
3300031543\|Ga0318516_10303455	Not Available	923	Open in IMG/M
3300031543\|Ga0318516_10853073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga tunisiensis	513	Open in IMG/M
3300031544\|Ga0318534_10243547	All Organisms → cellular organisms → Bacteria	1037	Open in IMG/M
3300031545\|Ga0318541_10283353	Not Available	923	Open in IMG/M
3300031546\|Ga0318538_10381185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	762	Open in IMG/M
3300031546\|Ga0318538_10514934	Not Available	649	Open in IMG/M
3300031546\|Ga0318538_10559416	All Organisms → cellular organisms → Bacteria → Proteobacteria	620	Open in IMG/M
3300031572\|Ga0318515_10398470	Not Available	737	Open in IMG/M
3300031640\|Ga0318555_10399486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	745	Open in IMG/M
3300031640\|Ga0318555_10519324	Not Available	645	Open in IMG/M
3300031679\|Ga0318561_10230260	Not Available	1008	Open in IMG/M
3300031679\|Ga0318561_10243369	All Organisms → cellular organisms → Bacteria	980	Open in IMG/M
3300031679\|Ga0318561_10375267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	780	Open in IMG/M
3300031679\|Ga0318561_10602682	Not Available	605	Open in IMG/M
3300031713\|Ga0318496_10106452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1509	Open in IMG/M
3300031715\|Ga0307476_10983337	Not Available	622	Open in IMG/M
3300031719\|Ga0306917_10147986	Not Available	1739	Open in IMG/M
3300031719\|Ga0306917_10355344	All Organisms → cellular organisms → Bacteria → Proteobacteria	1139	Open in IMG/M
3300031724\|Ga0318500_10633950	Not Available	543	Open in IMG/M
3300031736\|Ga0318501_10175053	Not Available	1114	Open in IMG/M
3300031744\|Ga0306918_10198101	Not Available	1512	Open in IMG/M
3300031744\|Ga0306918_10778545	Not Available	747	Open in IMG/M
3300031744\|Ga0306918_10958834	Not Available	665	Open in IMG/M
3300031744\|Ga0306918_11429619	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300031748\|Ga0318492_10293389	Not Available	845	Open in IMG/M
3300031748\|Ga0318492_10513617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	636	Open in IMG/M
3300031751\|Ga0318494_10563802	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300031765\|Ga0318554_10349674	Not Available	840	Open in IMG/M
3300031765\|Ga0318554_10399479	Not Available	780	Open in IMG/M
3300031765\|Ga0318554_10737965	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	552	Open in IMG/M
3300031768\|Ga0318509_10462681	Not Available	709	Open in IMG/M
3300031771\|Ga0318546_10091467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1981	Open in IMG/M
3300031771\|Ga0318546_10194857	Not Available	1382	Open in IMG/M
3300031771\|Ga0318546_11115804	Not Available	554	Open in IMG/M
3300031777\|Ga0318543_10124556	All Organisms → cellular organisms → Bacteria	1121	Open in IMG/M
3300031781\|Ga0318547_10932045	Not Available	542	Open in IMG/M
3300031781\|Ga0318547_11019690	Not Available	517	Open in IMG/M
3300031782\|Ga0318552_10655178	Not Available	535	Open in IMG/M
3300031796\|Ga0318576_10255627	Not Available	826	Open in IMG/M
3300031797\|Ga0318550_10219117	Not Available	922	Open in IMG/M
3300031797\|Ga0318550_10463393	Not Available	612	Open in IMG/M
3300031798\|Ga0318523_10330994	Not Available	759	Open in IMG/M
3300031805\|Ga0318497_10138551	All Organisms → cellular organisms → Bacteria	1326	Open in IMG/M
3300031819\|Ga0318568_10821467	Not Available	576	Open in IMG/M
3300031821\|Ga0318567_10555408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	652	Open in IMG/M
3300031833\|Ga0310917_10329919	Not Available	1034	Open in IMG/M
3300031879\|Ga0306919_10504597	All Organisms → cellular organisms → Bacteria	932	Open in IMG/M
3300031890\|Ga0306925_10037797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	4973	Open in IMG/M
3300031890\|Ga0306925_10054299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4182	Open in IMG/M
3300031890\|Ga0306925_10896427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella tundrae	912	Open in IMG/M
3300031896\|Ga0318551_10096962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Elioraeaceae → Elioraea → Elioraea rosea	1565	Open in IMG/M
3300031896\|Ga0318551_10721379	Not Available	578	Open in IMG/M
3300031897\|Ga0318520_10814561	Not Available	586	Open in IMG/M
3300031910\|Ga0306923_10026421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6211	Open in IMG/M
3300031910\|Ga0306923_10032305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5661	Open in IMG/M
3300031910\|Ga0306923_11150072	Not Available	833	Open in IMG/M
3300031912\|Ga0306921_10021540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7080	Open in IMG/M
3300031912\|Ga0306921_10042684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	5124	Open in IMG/M
3300031942\|Ga0310916_10104376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	2281	Open in IMG/M
3300031942\|Ga0310916_10475990	All Organisms → cellular organisms → Bacteria → Proteobacteria	1064	Open in IMG/M
3300031942\|Ga0310916_11243294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	614	Open in IMG/M
3300031945\|Ga0310913_10720458	Not Available	705	Open in IMG/M
3300031945\|Ga0310913_10798044	Not Available	666	Open in IMG/M
3300031946\|Ga0310910_10530234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. JC676	934	Open in IMG/M
3300031947\|Ga0310909_10888138	Not Available	732	Open in IMG/M
3300031954\|Ga0306926_10657684	Not Available	1274	Open in IMG/M
3300031981\|Ga0318531_10521338	Not Available	538	Open in IMG/M
3300032001\|Ga0306922_10189485	All Organisms → cellular organisms → Bacteria	2206	Open in IMG/M
3300032001\|Ga0306922_10495395	All Organisms → cellular organisms → Bacteria → Proteobacteria	1303	Open in IMG/M
3300032035\|Ga0310911_10924421	Not Available	503	Open in IMG/M
3300032052\|Ga0318506_10128658	Not Available	1099	Open in IMG/M
3300032054\|Ga0318570_10482799	Not Available	565	Open in IMG/M
3300032055\|Ga0318575_10361947	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	735	Open in IMG/M
3300032059\|Ga0318533_11238183	Not Available	546	Open in IMG/M
3300032063\|Ga0318504_10040063	Not Available	1918	Open in IMG/M
3300032063\|Ga0318504_10376925	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300032065\|Ga0318513_10411373	All Organisms → cellular organisms → Bacteria → Proteobacteria	660	Open in IMG/M
3300032066\|Ga0318514_10728235	Not Available	527	Open in IMG/M
3300032076\|Ga0306924_10303268	All Organisms → cellular organisms → Bacteria	1833	Open in IMG/M
3300032076\|Ga0306924_11087543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	872	Open in IMG/M
3300032076\|Ga0306924_11311144	Not Available	777	Open in IMG/M
3300032076\|Ga0306924_11827954	Not Available	632	Open in IMG/M
3300032089\|Ga0318525_10235957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	940	Open in IMG/M
3300032090\|Ga0318518_10437141	Not Available	670	Open in IMG/M
3300032091\|Ga0318577_10209895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	932	Open in IMG/M
3300032261\|Ga0306920_100271165	Not Available	2530	Open in IMG/M
3300032261\|Ga0306920_100661160	Not Available	1542	Open in IMG/M
3300032261\|Ga0306920_103629404	Not Available	568	Open in IMG/M
3300033289\|Ga0310914_11813681	Not Available	514	Open in IMG/M
3300033290\|Ga0318519_10809742	Not Available	576	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.83%
Host-Associated	Host-Associated	2.17%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.83%
Plants	Host-Associated → Plants	2.17%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.83%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.45%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	94.93%
Loam	Environmental → Terrestrial → Soil → Loam	2.90%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	82.61%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.17%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.45%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.72%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	49.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	32.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.14%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.17%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.72%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.72%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.72%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066690_105362981	3300005177	Soil	LANPEQLIADLQRQLAECSAERDEALQRETATRCNALDLSGSE*
Ga0066903_1041828922	3300005764	Tropical Forest Soil	MRATPDSTFTSPERLIAELQRQLAEREVELAECKAERHEAL*
Ga0066903_1074150141	3300005764	Tropical Forest Soil	MSATPDSTLANPEQLLADLQRQLAEREAELAECKAERDEA
Ga0081455_109443832	3300005937	Tabebuia Heterophylla Rhizosphere	MSATPDSTLADPQELIADLQRQLAEREAELAEALAER
Ga0079222_114811022	3300006755	Agricultural Soil	MNAPPENTAADPEQLIADLRRQLAEREAERDEGLQ
Ga0075423_102276673	3300009162	Populus Rhizosphere	MSATPDNTFADPEQRIADLEHQLAEREAELAVSNAERDEALQRQT
Ga0126373_100331195	3300010048	Tropical Forest Soil	MSAMPERTLADTERLIADLQRQLDECRAELAARNSE*
Ga0126378_108695911	3300010361	Tropical Forest Soil	MSAKPDSTFINPEQRIADLERQLAEREAELAESNAER
Ga0126378_125684322	3300010361	Tropical Forest Soil	MSATPDSTLANPEQLIADLQRQLAEREAELAERKAER
Ga0126378_131756551	3300010361	Tropical Forest Soil	MRATPDSTFTSPERLIAELQRQLAEREVELAECKAERQEAL*
Ga0134128_114847523	3300010373	Terrestrial Soil	MSATPDSTLVDPEQRIADLKRQLAEREAELAECRAERD
Ga0126381_1007936711	3300010376	Tropical Forest Soil	MSATPDSTFTNPEQRIADLERQLAESQAERDAYKAERDEALER
Ga0126381_1014195462	3300010376	Tropical Forest Soil	MSAIPDSTLAASEQLIADLQRQLAEFRAERDEARTARDRDR*
Ga0126369_112579112	3300012971	Tropical Forest Soil	MRAMPDSTFTSPERLIAELQRQLAEREVELAECKAERHEAL*
Ga0163162_120049272	3300013306	Switchgrass Rhizosphere	MSATPDSTVANPEQQIAELERRLAGREAELAACKAERDEALEQ
Ga0182036_101729344	3300016270	Soil	MSATPDSTLANPEQRIADLERQLAEREAELAECKAERDQGLQRE
Ga0182036_119368331	3300016270	Soil	MSATPESTLVNPEQLIADLQRQLAAREAELAECKA
Ga0182041_104472331	3300016294	Soil	MSATPDSTLANPEQRIADLERQLAEREAELAECQAE
Ga0182041_107964731	3300016294	Soil	MGATPDSMLGKPEQLIADLQRQLAEREAELAECKAER
Ga0182033_103403061	3300016319	Soil	MSATPESTVANPEQLIADLQRQLAEREAELAECKAE
Ga0182035_102043501	3300016341	Soil	MTATPDSTLATPEQLIADLQRQLAEREAELAEGKAERDEALQWE
Ga0182035_115671191	3300016341	Soil	MSTTPAGTLADSEQLIADLQRQLAEREAELADRRAECNEALQREA
Ga0182035_120937492	3300016341	Soil	MSAAHDSTLANPEQFIADLQRQLAEREAELAEREAELAECKAERDEAL
Ga0182035_121714261	3300016341	Soil	MSTTPASTLADSEQLIADLQRQLAEREAELADRRAECNEAL
Ga0182032_103833511	3300016357	Soil	MSATPDSTLAYPDQPIADLERQLAEREAELAECKAERDEA
Ga0182032_105679572	3300016357	Soil	MSATPDSTLAASERRIADLERQLAEREAELAECKAERDEA
Ga0182032_109507652	3300016357	Soil	MSAKPDSSLANPEQLIADLQRQLAEREAELAECKAERDEALQR
Ga0182034_101519763	3300016371	Soil	MSATPDSRLADSEQLIADLQRQLAEREAELAECKA
Ga0182040_111206611	3300016387	Soil	MSATPYSTLANSEQRIADLERQLAEREAELAECKAERDEALEQQ
Ga0182037_113266502	3300016404	Soil	MRATPDSTFTSPERLIAELQRQLAEREVELAECKAERHEGL
Ga0182039_102162424	3300016422	Soil	MSATPDSTFTSPEQRIADLERQLAEREAELAECKAE
Ga0182039_119375132	3300016422	Soil	MSTTPAGTLADSEQLIADLQRQLAEREAELADRRAECNEALQREAA
Ga0182038_115249522	3300016445	Soil	MRTTPDSTLANSDRVIAGLQRQLAERAAELAECQAE
Ga0182038_121993391	3300016445	Soil	MSAKPESQLANPEQRIADLERQLAEREAELAECKADRDAGLE
Ga0210401_108496702	3300020583	Soil	MSATPDSTLANPEQLIADLQRQLAEREAELTECKAE
Ga0210408_111399381	3300021178	Soil	MSATPDSTLADSEQLIANLHRQLAEREAELAECRAGRDEA
Ga0210408_113680351	3300021178	Soil	MSATPDSTLANPEQLIADLQRQLAEREAELAECKAE
Ga0126371_105616313	3300021560	Tropical Forest Soil	MRATPDSTFTSPERLIAELQRQLAEREVELAECKAERHEAL
Ga0126371_113686593	3300021560	Tropical Forest Soil	MSATPDSTLANPEQRIADLERQLAERTAERDEALHR
Ga0126371_126136751	3300021560	Tropical Forest Soil	MSATHDSTFANPEQRIADLQRQLGEYKAERDEAHRQLADTAA
Ga0126371_126456143	3300021560	Tropical Forest Soil	MSPTPDSTFTNPEQRIADLERQLAERQAELDKAQRK
Ga0126371_128474641	3300021560	Tropical Forest Soil	MSTTPDNTLAEPEQRIADLERQLAEREAELAECKAE
Ga0126371_129721271	3300021560	Tropical Forest Soil	MSATPDSKLADPQQRIADLERQLAEREAELAERTAEHDEALEQ
Ga0126371_135954122	3300021560	Tropical Forest Soil	MSATPESTLTNPEQRIADLERQLAEREAELAESNAERDEALEQ
Ga0207693_104527752	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MSTIPASTLADSERLIADLQRQLAEREAELAECKAERDEA
Ga0209465_105466352	3300027874	Tropical Forest Soil	MSATPDSTLANLEQRIADLERQLAERKAERDEAFAERDKAKRSVAERIAE
Ga0318516_103034551	3300031543	Soil	MSATRDSTLADSEQLIADLQRQLAKCRAERDEAPTFPPPRWGR
Ga0318516_108530731	3300031543	Soil	MSATPDSTLANPEQRIADLERQLAEREADLAECKA
Ga0318534_102435472	3300031544	Soil	MRTTPGSTLANPEQRIADLERQLAEREAELAEARK
Ga0318541_102833531	3300031545	Soil	MSATPDSTLVNPEQLIADLQRQLAEREAELAEAQRNL
Ga0318538_103811851	3300031546	Soil	QMRATPDSTFTSPERLIADLQRQLAEREVELAECKAERHEAL
Ga0318538_105149342	3300031546	Soil	MSATPDSTLATPEQLIADLQRQLAEREAELAEGKAERDEALQR
Ga0318538_105594162	3300031546	Soil	MSATPDSTLANPEQRIADLQRQLVERETELAECKA
Ga0318515_103984702	3300031572	Soil	MSATPDSTLANPEQRIADLERQLAEREAEFAEALQR
Ga0318555_103994861	3300031640	Soil	MSATPDSTLANPEQRIADLERQLAEREAELAECKAE
Ga0318555_105193242	3300031640	Soil	MSATHDSTLANPEQLIADLQRQLAECKAERDKALQRE
Ga0318561_102302601	3300031679	Soil	MSATPDSTLANPEQRIADLQRQLVERTAERDEALKQQTA
Ga0318561_102433691	3300031679	Soil	MSATPDSTLANPEQLIADLRRQLVECKAELAECKAERDEALQ
Ga0318561_103752673	3300031679	Soil	MSATPDSTLADSEQLIADLQRQLAEREAELAECKAER
Ga0318561_106026821	3300031679	Soil	MSATPDSTLANPEQLIADLQRQLAECQAERDEWKAERDEA
Ga0318496_101064524	3300031713	Soil	MSATPDSTLANPEQLIADLQRQLAEHEAELAECKAERD
Ga0307476_109833372	3300031715	Hardwood Forest Soil	MSATPDSTLANPEQLIADLQRQLAEREAELAVCKAERDEALQRET
Ga0306917_101479861	3300031719	Soil	MSTTPDSTLANPDQRIADLERQLGEREAELAECKAER
Ga0306917_103553442	3300031719	Soil	MSATPESTFTSPEQLITDLQRQLAEREVELAECRAERDEALEQQTAAAEV
Ga0318500_106339501	3300031724	Soil	MSATPNSTLANSEQLIVDLQRQLAECRAELAECKA
Ga0318501_101750532	3300031736	Soil	MSATPDSTLANSEQLIADLQRQLAECQAERDECQAERDECKAE
Ga0306918_101981014	3300031744	Soil	MSATPDSTLATPEQLIADLQRQLAEREAELAEVKAERDEA
Ga0306918_107785451	3300031744	Soil	MSATPDSTLANPEQLIADLQRQLAECQAERDEWKA
Ga0306918_109588341	3300031744	Soil	MSATPDSTLANPDQRIADLERQLAERDVELAEREAE
Ga0306918_114296192	3300031744	Soil	MSTTPASTVADSEQLIADLQRQLAEREAELAEREAELAEAR
Ga0318492_102933891	3300031748	Soil	MSATPDSALANPEQLIADLQRQLAEREAELAEGKAERDEAL
Ga0318492_105136172	3300031748	Soil	MSATPDSTLANPDQRIADLERQLAEREAELAEAQRNLN
Ga0318494_105638021	3300031751	Soil	MSATTEKTLANPEQRIADLERQLAEREVELAECKAERDEALKQQTA
Ga0318554_103496741	3300031765	Soil	MSATPDSTLANPEQLIADLRRQLVECKAELAECKAERDE
Ga0318554_103994792	3300031765	Soil	MSATRDSTLADSEQLIADLQRQLAKCRAERDEAPT
Ga0318554_107379652	3300031765	Soil	MSATPNITLANPEQRIADLEHQLAERDAELAEREAE
Ga0318509_104626811	3300031768	Soil	MSATPDSTLAYPDQPIADLERQLAEREAELAECKA
Ga0318546_100914672	3300031771	Soil	MSATPDSTLANSEQRIADLELQLAEREAELAECKAERDEALEQQTA
Ga0318546_101948573	3300031771	Soil	MSATPEKTLANPEQRIADLERQLAEREVELAECKAERDEAL
Ga0318546_111158042	3300031771	Soil	MSATPDSTLADSERRIADLERQLAEREAELAECKAERDASKV
Ga0318543_101245563	3300031777	Soil	MSTTPASTLADSEQLIADLQRQLAEREAELADRQAECN
Ga0318543_103557991	3300031777	Soil	MSATPDSTLTNPDQLIADLRRQVAEREAELAEAQRNLN
Ga0318547_109320451	3300031781	Soil	MRATPDSTFTSPERLIADLQRQLAEREVELAECKAE
Ga0318547_110196902	3300031781	Soil	MSATPDSTLANPEHRIADLERQLVERAAELAECRAERD
Ga0318552_106551782	3300031782	Soil	MSATPDSTLANPEHRIADLERQLAERAAELAECRAERDE
Ga0318576_102556272	3300031796	Soil	MSATPDSTLANPEQRIGDLERQLAEREAELAECKAERDEAREQQ
Ga0318550_102191171	3300031797	Soil	MSATPDSTLANPEQLIADLQRQFAEREADLAECKAERDEALQR
Ga0318550_104633931	3300031797	Soil	MSATPDSTLADSEQLIADLQRQLAEREAELAECKAE
Ga0318523_103309941	3300031798	Soil	MSATPDSTLATPEQLIADLQRQLAEREAELAEVKAERDEALQRE
Ga0318497_101385511	3300031805	Soil	MSATQDSTLANPEQFIADLQRQLAECRAELAECKAERDEALAQ
Ga0318568_108214671	3300031819	Soil	MSATPDSTFTNPEQRIADLERQLAEREAELAESNAERDEALEQQ
Ga0318567_105554082	3300031821	Soil	MSATPDSTLAHPEQLIADLQRQLAEREVELADCRAE
Ga0310917_103299191	3300031833	Soil	MSATPDSTFTSAEQLIADLQRQLVECKAERDEALEQ
Ga0306919_105045971	3300031879	Soil	MSTTPASTLADSEQLIADLQRQLAEREAELADHRAECN
Ga0306925_100377975	3300031890	Soil	MSATPDSTLANSEQRIADLERQLAEREAELAECKAERDEALEQQT
Ga0306925_100542994	3300031890	Soil	MSATPDSTLANPEQLIADLQRQLAVCRAERDECKA
Ga0306925_108964271	3300031890	Soil	MSATPDITFTDPKQRIADLERQLAEREAELAERTAERDEALEQQ
Ga0318551_100969623	3300031896	Soil	MSATPDSTLAHPEQLIADLQRQLAEREVELADCRAERDEAQR
Ga0318551_107213791	3300031896	Soil	MSATPDSTLANPDQLIADLQRQLAEREAELAECKAERDEALEQ
Ga0318520_108145611	3300031897	Soil	MSATPDNTLADSERRIADLERQLAEREAELAECKAERDEALEQQT
Ga0306923_100264217	3300031910	Soil	MSTTPASTVADSEQLIADLQRQLAEREAELAEYKAER
Ga0306923_100323057	3300031910	Soil	MSATPDSTLANPEQRIADLERQLAEREAELAECKAERDEAR
Ga0306923_111500721	3300031910	Soil	MSATPDSTLANPEQRIADLERQLAEREAELAEALQR
Ga0306921_100215402	3300031912	Soil	MRATPDSTFTSPERLIADLQRQLAEREVELAECKAERHEAL
Ga0306921_100426845	3300031912	Soil	MSATPDSTLANSEQRIADLERQLAEREAELAECKAERDEALE
Ga0310916_101043761	3300031942	Soil	MSATPDSTFTNPEQRIADLERQLAEREAELTQAREQ
Ga0310916_104759901	3300031942	Soil	GPQMRATPDSTFTSPERLIADLQRQLAEREVELAECKAERHEAL
Ga0310916_112432942	3300031942	Soil	MSATPDSTFANPELRIADLERQLAEREAELAECRA
Ga0310913_107204581	3300031945	Soil	MSAAHDSTLANPEQFIADLQRQLAEREAELAEREAE
Ga0310913_107980441	3300031945	Soil	MSATHDSTLANPEQLIADLQRQLAECKAEIDEALEQQTAT
Ga0310910_105302341	3300031946	Soil	MSATSDSTLANPEQRIADLERQLAEREAELAERTAE
Ga0310909_108881381	3300031947	Soil	MSATPDSMLADPDQRIADLERQLAEREAELAERTAERDEA
Ga0306926_103657973	3300031954	Soil	MSATPESMLANPEHLIADVQRQLAEREAELAEAQRNLN
Ga0306926_106576843	3300031954	Soil	MSATPDSTLANPDQRIADLERQLAEREAELAECKPERDEGLQRETA
Ga0318531_105213381	3300031981	Soil	MSATPDNTLADSERRIADLERQLAEREAELAECKA
Ga0306922_101894851	3300032001	Soil	MSTTPASTLADSEQLIADLQRQLAEREAELADRRAECNEALQREAATA
Ga0306922_104953951	3300032001	Soil	MSATPDSTLANSEQRIADLERQLAEREAELAECKAERDE
Ga0310911_109244211	3300032035	Soil	LSATPDSTLANPEQRIADLERQLAEREAELAEAQRSLNET
Ga0318506_101286582	3300032052	Soil	MSATPDSTLANPERRIADLERQLAEREAELAECKAERDKALQRE
Ga0318570_104827991	3300032054	Soil	MSATPDTTLADSERRIADLERHLAEREAELADCKAERDEALE
Ga0318575_103619471	3300032055	Soil	MSATPESTFTSPEQRIADLERQLAEREVELAEAQRN
Ga0318533_112381831	3300032059	Soil	MSATPDSTLANPEQLIADLQRQLAEREAELAECKA
Ga0318504_100400635	3300032063	Soil	MSATPDSTLANPEQRIADLQRQLVERTAERDEALKQ
Ga0318504_103769252	3300032063	Soil	MSATQDSTLANPEQFIADLQRQLAECRAELAECKAE
Ga0318513_104113731	3300032065	Soil	MSATPDSTLANPEQRIADLQRQLVEREAELAECKA
Ga0318514_107282351	3300032066	Soil	MSATPYSTLANSEQRIADLERQLAEREAELAECKAERDEALE
Ga0306924_103032681	3300032076	Soil	MSATPDSRLADSEQLIADLQRQLAEREAELAECKAERDEA
Ga0306924_110875433	3300032076	Soil	MSATPDSTLANPDQRIADLERQLAERETELAECKAE
Ga0306924_113111441	3300032076	Soil	MSATPDSTLANPEQLIADLQRQLAEREAELAECKAERDEALE
Ga0306924_118279541	3300032076	Soil	MSTTPDSTLVDPERRIADLERQLAKREAELAECKAERNEALDQQTA
Ga0318525_102359572	3300032089	Soil	MSATPDSTLANPEQRIADLERQLAEREAELAEALQRE
Ga0318518_104371411	3300032090	Soil	MSATPDSTLANSEQRIADLERQLAEREAELAECKAERDEALEQQ
Ga0318577_102098952	3300032091	Soil	MNATPDSTLANPEQRIADLERQLAEREAELAEALRR
Ga0306920_1002711655	3300032261	Soil	MSATPNSTLANSEQLIVDLQRQLAECRAELAECKAERDEALA
Ga0306920_1006611604	3300032261	Soil	MSTTPASTLADSEQLIADLQRQLAEREAELADRRAECNEALQREAAT
Ga0306920_1036294041	3300032261	Soil	MNATPDSTLASPEQRIADLERQLAEREAELAKRDAELT
Ga0310914_118136811	3300033289	Soil	MRTTPDSTLANSDRVIAGLQRQLAERAAELAECQAERDQGLQ
Ga0318519_108097421	3300033290	Soil	MAATPDSTLANPEQLIADLQRQLAERKAERDQYKAERD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F055630

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences