NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F055802

Metagenome / Metatranscriptome Family F055802

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F055802
Family Type Metagenome / Metatranscriptome
Number of Sequences 138
Average Sequence Length 53 residues
Representative Sequence MSGNEPPIEIDLPGQVKSRFSDNNQLSLYMHWAKMLQAKNWSEITSAKNG
Number of Associated Samples 123
Number of Associated Scaffolds 138

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 92.75 %
% of genes from short scaffolds (< 2000 bps) 91.30 %
Associated GOLD sequencing projects 115
AlphaFold2 3D model prediction Yes
3D model pTM-score0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (99.275 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(12.319 % of family members)
Environment Ontology (ENVO) Unclassified
(38.406 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(39.130 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 28.21%    β-sheet: 0.00%    Coil/Unstructured: 71.79%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.36
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 138 Family Scaffolds
PF00866Ring_hydroxyl_B 89.86
PF07355GRDB 3.62
PF03190Thioredox_DsbH 0.72
PF07690MFS_1 0.72
PF09990DUF2231 0.72
PF00848Ring_hydroxyl_A 0.72
PF01734Patatin 0.72
PF00111Fer2 0.72
PF09338Gly_reductase 0.72

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 138 Family Scaffolds
COG55173-phenylpropionate/cinnamic acid dioxygenase, small subunitSecondary metabolites biosynthesis, transport and catabolism [Q] 89.86
COG4638Phenylpropionate dioxygenase or related ring-hydroxylating dioxygenase, large terminal subunitInorganic ion transport and metabolism [P] 1.45
COG1331Uncharacterized conserved protein YyaL, SSP411 family, contains thoiredoxin and six-hairpin glycosidase-like domainsGeneral function prediction only [R] 0.72
COG1752Predicted acylesterase/phospholipase RssA, containd patatin domainGeneral function prediction only [R] 0.72
COG3621Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotRGeneral function prediction only [R] 0.72
COG4667Predicted phospholipase, patatin/cPLA2 familyLipid transport and metabolism [I] 0.72

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms99.28 %
UnclassifiedrootN/A0.72 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2199352025|deepsgr__Contig_93995All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1310Open in IMG/M
2228664022|INPgaii200_c0708110All Organisms → cellular organisms → Bacteria694Open in IMG/M
3300000789|JGI1027J11758_12644242All Organisms → cellular organisms → Bacteria885Open in IMG/M
3300000890|JGI11643J12802_10505162All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium560Open in IMG/M
3300000890|JGI11643J12802_10787426All Organisms → cellular organisms → Bacteria1625Open in IMG/M
3300000953|JGI11615J12901_10332434All Organisms → cellular organisms → Bacteria503Open in IMG/M
3300000955|JGI1027J12803_109338932All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium545Open in IMG/M
3300004114|Ga0062593_101330938All Organisms → cellular organisms → Bacteria763Open in IMG/M
3300004268|Ga0066398_10184169All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia543Open in IMG/M
3300004479|Ga0062595_102096742All Organisms → cellular organisms → Bacteria550Open in IMG/M
3300004778|Ga0062383_10694984All Organisms → cellular organisms → Bacteria520Open in IMG/M
3300005186|Ga0066676_10733478All Organisms → cellular organisms → Bacteria672Open in IMG/M
3300005276|Ga0065717_1015738All Organisms → cellular organisms → Bacteria520Open in IMG/M
3300005332|Ga0066388_103565613All Organisms → cellular organisms → Bacteria794Open in IMG/M
3300005333|Ga0070677_10689272All Organisms → cellular organisms → Bacteria574Open in IMG/M
3300005340|Ga0070689_101421499All Organisms → cellular organisms → Bacteria627Open in IMG/M
3300005353|Ga0070669_101224824All Organisms → cellular organisms → Bacteria649Open in IMG/M
3300005439|Ga0070711_101979321All Organisms → cellular organisms → Bacteria512Open in IMG/M
3300005441|Ga0070700_101284409All Organisms → cellular organisms → Bacteria614Open in IMG/M
3300005458|Ga0070681_11391568All Organisms → cellular organisms → Bacteria625Open in IMG/M
3300005468|Ga0070707_101791510All Organisms → cellular organisms → Bacteria581Open in IMG/M
3300005544|Ga0070686_100171815All Organisms → cellular organisms → Bacteria1533Open in IMG/M
3300005544|Ga0070686_100651004All Organisms → cellular organisms → Bacteria835Open in IMG/M
3300005615|Ga0070702_100172301All Organisms → cellular organisms → Bacteria1409Open in IMG/M
3300005618|Ga0068864_100695185All Organisms → cellular organisms → Bacteria993Open in IMG/M
3300005618|Ga0068864_102289739All Organisms → cellular organisms → Bacteria547Open in IMG/M
3300005713|Ga0066905_100623231All Organisms → cellular organisms → Bacteria916Open in IMG/M
3300005842|Ga0068858_100063255All Organisms → cellular organisms → Bacteria3424Open in IMG/M
3300005883|Ga0075299_1008889All Organisms → cellular organisms → Bacteria829Open in IMG/M
3300006032|Ga0066696_10826136All Organisms → cellular organisms → Bacteria591Open in IMG/M
3300006237|Ga0097621_101094966All Organisms → cellular organisms → Bacteria → Proteobacteria748Open in IMG/M
3300006845|Ga0075421_101506497All Organisms → cellular organisms → Bacteria735Open in IMG/M
3300006846|Ga0075430_100014176All Organisms → cellular organisms → Bacteria → Proteobacteria6794Open in IMG/M
3300006846|Ga0075430_100059512All Organisms → cellular organisms → Bacteria3212Open in IMG/M
3300006847|Ga0075431_101709911All Organisms → cellular organisms → Bacteria586Open in IMG/M
3300006903|Ga0075426_10934505All Organisms → cellular organisms → Bacteria → Proteobacteria655Open in IMG/M
3300006914|Ga0075436_100306622All Organisms → cellular organisms → Bacteria1139Open in IMG/M
3300006969|Ga0075419_10806860All Organisms → cellular organisms → Bacteria672Open in IMG/M
3300006969|Ga0075419_10913126All Organisms → cellular organisms → Bacteria634Open in IMG/M
3300006969|Ga0075419_11368464All Organisms → cellular organisms → Bacteria527Open in IMG/M
3300007255|Ga0099791_10304395All Organisms → cellular organisms → Bacteria760Open in IMG/M
3300009147|Ga0114129_10046358All Organisms → cellular organisms → Bacteria → Proteobacteria6109Open in IMG/M
3300009147|Ga0114129_11076383All Organisms → cellular organisms → Bacteria1008Open in IMG/M
3300009153|Ga0105094_10739849All Organisms → cellular organisms → Bacteria577Open in IMG/M
3300009162|Ga0075423_10067639All Organisms → cellular organisms → Bacteria3706Open in IMG/M
3300009162|Ga0075423_10110181All Organisms → cellular organisms → Bacteria2883Open in IMG/M
3300009167|Ga0113563_12669580All Organisms → cellular organisms → Bacteria604Open in IMG/M
3300009609|Ga0105347_1418990All Organisms → cellular organisms → Bacteria577Open in IMG/M
3300009792|Ga0126374_11668043All Organisms → cellular organisms → Bacteria529Open in IMG/M
3300010040|Ga0126308_10961471All Organisms → cellular organisms → Bacteria597Open in IMG/M
3300010361|Ga0126378_11061022All Organisms → cellular organisms → Bacteria912Open in IMG/M
3300010366|Ga0126379_12617261All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria602Open in IMG/M
3300010397|Ga0134124_11324107All Organisms → cellular organisms → Bacteria744Open in IMG/M
3300010397|Ga0134124_11904438All Organisms → cellular organisms → Bacteria630Open in IMG/M
3300010398|Ga0126383_12841864All Organisms → cellular organisms → Bacteria565Open in IMG/M
3300011119|Ga0105246_10097596Not Available2132Open in IMG/M
3300011119|Ga0105246_10520046All Organisms → cellular organisms → Bacteria1014Open in IMG/M
3300011403|Ga0137313_1106646All Organisms → cellular organisms → Bacteria509Open in IMG/M
3300011424|Ga0137439_1046558All Organisms → cellular organisms → Bacteria824Open in IMG/M
3300011432|Ga0137428_1113135All Organisms → cellular organisms → Bacteria779Open in IMG/M
3300011434|Ga0137464_1083392All Organisms → cellular organisms → Bacteria928Open in IMG/M
3300012171|Ga0137342_1032311All Organisms → cellular organisms → Bacteria1004Open in IMG/M
3300012202|Ga0137363_11298800All Organisms → cellular organisms → Bacteria616Open in IMG/M
3300012203|Ga0137399_10156084All Organisms → cellular organisms → Bacteria1827Open in IMG/M
3300012205|Ga0137362_10571336All Organisms → cellular organisms → Bacteria976Open in IMG/M
3300012361|Ga0137360_11080729All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium693Open in IMG/M
3300012483|Ga0157337_1008206All Organisms → cellular organisms → Bacteria763Open in IMG/M
3300012487|Ga0157321_1026530All Organisms → cellular organisms → Bacteria566Open in IMG/M
3300012515|Ga0157338_1022413All Organisms → cellular organisms → Bacteria746Open in IMG/M
3300012902|Ga0157291_10107108All Organisms → cellular organisms → Bacteria771Open in IMG/M
3300012911|Ga0157301_10166339All Organisms → cellular organisms → Bacteria715Open in IMG/M
3300012930|Ga0137407_10107077All Organisms → cellular organisms → Bacteria2407Open in IMG/M
3300013307|Ga0157372_10115318All Organisms → cellular organisms → Bacteria3080Open in IMG/M
3300013308|Ga0157375_10284998All Organisms → cellular organisms → Bacteria1815Open in IMG/M
3300014313|Ga0075347_1114314All Organisms → cellular organisms → Bacteria621Open in IMG/M
3300014315|Ga0075350_1102543All Organisms → cellular organisms → Bacteria679Open in IMG/M
3300014318|Ga0075351_1019461All Organisms → cellular organisms → Bacteria → Proteobacteria1051Open in IMG/M
3300014326|Ga0157380_10848616All Organisms → cellular organisms → Bacteria935Open in IMG/M
3300014872|Ga0180087_1077250All Organisms → cellular organisms → Bacteria640Open in IMG/M
3300014872|Ga0180087_1113485All Organisms → cellular organisms → Bacteria518Open in IMG/M
3300014882|Ga0180069_1156799All Organisms → cellular organisms → Bacteria555Open in IMG/M
3300015201|Ga0173478_10394699All Organisms → cellular organisms → Bacteria661Open in IMG/M
3300015372|Ga0132256_101877105All Organisms → cellular organisms → Bacteria707Open in IMG/M
3300015372|Ga0132256_102661872All Organisms → cellular organisms → Bacteria600Open in IMG/M
3300018031|Ga0184634_10198331All Organisms → cellular organisms → Bacteria913Open in IMG/M
3300018054|Ga0184621_10115768All Organisms → cellular organisms → Bacteria956Open in IMG/M
3300018066|Ga0184617_1018282All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1523Open in IMG/M
3300018070|Ga0184631_10321107All Organisms → cellular organisms → Bacteria644Open in IMG/M
3300018077|Ga0184633_10602325All Organisms → cellular organisms → Bacteria518Open in IMG/M
3300018079|Ga0184627_10211031All Organisms → cellular organisms → Bacteria1025Open in IMG/M
3300018084|Ga0184629_10072171All Organisms → cellular organisms → Bacteria1633Open in IMG/M
3300018465|Ga0190269_11056823All Organisms → cellular organisms → Bacteria621Open in IMG/M
3300018469|Ga0190270_12887644All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium543Open in IMG/M
3300018481|Ga0190271_12347622All Organisms → cellular organisms → Bacteria638Open in IMG/M
3300019377|Ga0190264_10625303All Organisms → cellular organisms → Bacteria775Open in IMG/M
3300025289|Ga0209002_10740441All Organisms → cellular organisms → Bacteria507Open in IMG/M
3300025324|Ga0209640_10320647All Organisms → cellular organisms → Bacteria1291Open in IMG/M
3300025792|Ga0210143_1084476All Organisms → cellular organisms → Bacteria579Open in IMG/M
3300025914|Ga0207671_10476503All Organisms → cellular organisms → Bacteria995Open in IMG/M
3300025922|Ga0207646_10877243All Organisms → cellular organisms → Bacteria797Open in IMG/M
3300025923|Ga0207681_11447190All Organisms → cellular organisms → Bacteria576Open in IMG/M
3300026014|Ga0208776_1000495All Organisms → cellular organisms → Bacteria3331Open in IMG/M
3300026029|Ga0208002_1013617All Organisms → cellular organisms → Bacteria785Open in IMG/M
3300026035|Ga0207703_10332449All Organisms → cellular organisms → Bacteria1394Open in IMG/M
3300026046|Ga0208780_1003102All Organisms → cellular organisms → Bacteria1427Open in IMG/M
3300027654|Ga0209799_1006194All Organisms → cellular organisms → Bacteria2494Open in IMG/M
3300027713|Ga0209286_1326715All Organisms → cellular organisms → Bacteria530Open in IMG/M
3300027787|Ga0209074_10522976All Organisms → cellular organisms → Bacteria518Open in IMG/M
3300027815|Ga0209726_10345962All Organisms → cellular organisms → Bacteria709Open in IMG/M
3300027873|Ga0209814_10477747All Organisms → cellular organisms → Bacteria551Open in IMG/M
3300027886|Ga0209486_10383249All Organisms → cellular organisms → Bacteria849Open in IMG/M
3300027909|Ga0209382_10287498All Organisms → cellular organisms → Bacteria1857Open in IMG/M
3300027979|Ga0209705_10455874All Organisms → cellular organisms → Bacteria629Open in IMG/M
3300028420|Ga0210366_10204582All Organisms → cellular organisms → Bacteria752Open in IMG/M
3300028771|Ga0307320_10206442All Organisms → cellular organisms → Bacteria769Open in IMG/M
3300028802|Ga0307503_10404422All Organisms → cellular organisms → Bacteria714Open in IMG/M
3300028878|Ga0307278_10193102All Organisms → cellular organisms → Bacteria909Open in IMG/M
3300030620|Ga0302046_10263219All Organisms → cellular organisms → Bacteria1419Open in IMG/M
3300031229|Ga0299913_11383490All Organisms → cellular organisms → Bacteria659Open in IMG/M
3300031548|Ga0307408_100660257All Organisms → cellular organisms → Bacteria936Open in IMG/M
3300031548|Ga0307408_102510839All Organisms → cellular organisms → Bacteria501Open in IMG/M
3300031720|Ga0307469_10328499All Organisms → cellular organisms → Bacteria1274Open in IMG/M
3300031824|Ga0307413_11618166All Organisms → cellular organisms → Bacteria576Open in IMG/M
3300031943|Ga0310885_10820052All Organisms → cellular organisms → Bacteria529Open in IMG/M
3300031954|Ga0306926_10501814All Organisms → cellular organisms → Bacteria1491Open in IMG/M
3300031965|Ga0326597_11766598All Organisms → cellular organisms → Bacteria582Open in IMG/M
3300032013|Ga0310906_11422338All Organisms → cellular organisms → Bacteria509Open in IMG/M
3300032157|Ga0315912_11287054All Organisms → cellular organisms → Bacteria578Open in IMG/M
3300032421|Ga0310812_10067348All Organisms → cellular organisms → Bacteria1416Open in IMG/M
3300032421|Ga0310812_10486455All Organisms → cellular organisms → Bacteria556Open in IMG/M
3300033004|Ga0335084_11225430All Organisms → cellular organisms → Bacteria749Open in IMG/M
3300033412|Ga0310810_10202510All Organisms → cellular organisms → Bacteria2240Open in IMG/M
3300033412|Ga0310810_10553169All Organisms → cellular organisms → Bacteria1123Open in IMG/M
3300033434|Ga0316613_11115290All Organisms → cellular organisms → Bacteria543Open in IMG/M
3300033485|Ga0316626_11577400All Organisms → cellular organisms → Bacteria592Open in IMG/M
3300033811|Ga0364924_143795All Organisms → cellular organisms → Bacteria560Open in IMG/M
3300034150|Ga0364933_209657All Organisms → cellular organisms → Bacteria513Open in IMG/M
3300034819|Ga0373958_0102013All Organisms → cellular organisms → Bacteria674Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil12.32%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere10.87%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil6.52%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil5.80%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment5.07%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil4.35%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands3.62%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.62%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil2.90%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil2.90%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere2.90%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment2.17%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil2.17%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere2.17%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere2.17%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere2.17%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.45%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.45%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.45%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.45%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil1.45%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil1.45%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment1.45%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.45%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere1.45%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere1.45%
Wetland SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment0.72%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands0.72%
GroundwaterEnvironmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater0.72%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine0.72%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands0.72%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil0.72%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.72%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.72%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil0.72%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.72%
SoilEnvironmental → Terrestrial → Soil → Loam → Unclassified → Soil0.72%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.72%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.72%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.72%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.72%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.72%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.72%
Rhizosphere SoilHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil0.72%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.72%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2199352025Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOILEnvironmentalOpen in IMG/M
2228664022Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000789Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000890Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000953Soil microbial communities from Great Prairies - Kansas Corn soilEnvironmentalOpen in IMG/M
3300000955Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004268Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBioEnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300004778Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3FreshEnvironmentalOpen in IMG/M
3300005186Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125EnvironmentalOpen in IMG/M
3300005276Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Mutant cpr5Host-AssociatedOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005333Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaGHost-AssociatedOpen in IMG/M
3300005340Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaGEnvironmentalOpen in IMG/M
3300005353Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaGHost-AssociatedOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005458Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaGEnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005544Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaGEnvironmentalOpen in IMG/M
3300005615Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaGEnvironmentalOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005842Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2Host-AssociatedOpen in IMG/M
3300005883Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_302EnvironmentalOpen in IMG/M
3300006032Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145EnvironmentalOpen in IMG/M
3300006237Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)Host-AssociatedOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006846Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4Host-AssociatedOpen in IMG/M
3300006847Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5Host-AssociatedOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300006914Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5Host-AssociatedOpen in IMG/M
3300006969Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3Host-AssociatedOpen in IMG/M
3300007255Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1EnvironmentalOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009153Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015EnvironmentalOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009167Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)EnvironmentalOpen in IMG/M
3300009609Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890EnvironmentalOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300010040Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300011119Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaGHost-AssociatedOpen in IMG/M
3300011403Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT166_2EnvironmentalOpen in IMG/M
3300011424Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT200_2EnvironmentalOpen in IMG/M
3300011432Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT718_2EnvironmentalOpen in IMG/M
3300011434Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT814_2EnvironmentalOpen in IMG/M
3300012171Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT466_2EnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012483Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.4.yng.040610Host-AssociatedOpen in IMG/M
3300012487Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.4.old.130510Host-AssociatedOpen in IMG/M
3300012515Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.7.yng.070610Host-AssociatedOpen in IMG/M
3300012902Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1EnvironmentalOpen in IMG/M
3300012911Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300013307Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014313Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLC_D1EnvironmentalOpen in IMG/M
3300014315Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleC_D1EnvironmentalOpen in IMG/M
3300014318Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D1_rdEnvironmentalOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300014872Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT790_16_10DEnvironmentalOpen in IMG/M
3300014882Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT231B'_16_10DEnvironmentalOpen in IMG/M
3300015201Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)EnvironmentalOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300018031Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1EnvironmentalOpen in IMG/M
3300018054Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1EnvironmentalOpen in IMG/M
3300018066Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1EnvironmentalOpen in IMG/M
3300018070Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_b1EnvironmentalOpen in IMG/M
3300018077Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1EnvironmentalOpen in IMG/M
3300018079Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1EnvironmentalOpen in IMG/M
3300018084Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1EnvironmentalOpen in IMG/M
3300018465Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 ISEnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300018481Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 TEnvironmentalOpen in IMG/M
3300019377Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 TEnvironmentalOpen in IMG/M
3300025289Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 2EnvironmentalOpen in IMG/M
3300025324Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)EnvironmentalOpen in IMG/M
3300025792Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025914Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026014Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_205 (SPAdes)EnvironmentalOpen in IMG/M
3300026029Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300026035Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026046Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D1 (SPAdes)EnvironmentalOpen in IMG/M
3300027654Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027713Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015 (SPAdes)EnvironmentalOpen in IMG/M
3300027787Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)EnvironmentalOpen in IMG/M
3300027815Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)EnvironmentalOpen in IMG/M
3300027873Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300027886Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)EnvironmentalOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300027979Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015 (SPAdes)EnvironmentalOpen in IMG/M
3300028420Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States ? S.641 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300028771Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369EnvironmentalOpen in IMG/M
3300028802Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_SEnvironmentalOpen in IMG/M
3300028878Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117EnvironmentalOpen in IMG/M
3300030620Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111EnvironmentalOpen in IMG/M
3300031229Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38EnvironmentalOpen in IMG/M
3300031548Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3Host-AssociatedOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031824Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2Host-AssociatedOpen in IMG/M
3300031943Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2EnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300031965Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185EnvironmentalOpen in IMG/M
3300032013Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3EnvironmentalOpen in IMG/M
3300032157Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soilEnvironmentalOpen in IMG/M
3300032421Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3EnvironmentalOpen in IMG/M
3300033004Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4EnvironmentalOpen in IMG/M
3300033412Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NCEnvironmentalOpen in IMG/M
3300033434Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_CT_bEnvironmentalOpen in IMG/M
3300033485Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D5_AEnvironmentalOpen in IMG/M
3300033811Sediment microbial communities from East River floodplain, Colorado, United States - 28_j17EnvironmentalOpen in IMG/M
3300034150Sediment microbial communities from East River floodplain, Colorado, United States - 25_j17EnvironmentalOpen in IMG/M
3300034819Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
deepsgr_014135102199352025SoilMTGNEPPIEIDLPGIVKSRFSDNNQLSMYMHWAKMLQAKNWSEIMSRQNG
INPgaii200_070811022228664022SoilPIEIDLPGIVKSRFSDNNQLSMYMHWAKMLQAKNWSEIMSRQNG
JGI1027J11758_1264424233300000789SoilIELDLPGQTMSRFSDNNQLNLYMHWAKVLEAKNWREIKSTAS*
JGI11643J12802_1050516213300000890SoilPANYQMSGNEPPIEIDLPGQVKSRFSDNNQLNLYMHWAKMLQAKNWGEISSAENG*
JGI11643J12802_1078742613300000890SoilELPGRVASRFSDNNQLNLYMHWAKMMEANSWNEIVGAERA*
JGI11615J12901_1033243423300000953SoilGNEPPLDIDLPGTVTSRFSDNNQLSLYMHWAKMLQAKSWSELLSTQNG*
JGI1027J12803_10933893223300000955SoilPANYQMRGDNSPIEIDLPGRVKSRFSDNNQLSLYMHWAKMLQAKNWGEIMSAENG*
Ga0062593_10133093823300004114SoilIELPGRVKSRFSDNNQLSLYMHWAKMLQAKNWSEVSRATDG*
Ga0066398_1018416923300004268Tropical Forest SoilDLPGRTMSRFSDNNQLNLYMHWAKVLEAKNWDEIKSAAS*
Ga0062595_10209674223300004479SoilMSGNEPPLEVDLPGTIKSRFSDNNQLSLYMHWANMLQAKSWTELLSTQNG*
Ga0062383_1069498413300004778Wetland SedimentIDLPGRVKSRFSDNNQLSLYMHWAKMLQAKNWSEVTSASNG*
Ga0066676_1073347823300005186SoilPANYQMTGNEPPIEIDLPGIVKSRFSDNNQLSMYMHWAKMLQAKSWSEIMSRQNG*
Ga0065717_101573813300005276Arabidopsis RhizosphereAAKSLIGRRHPANYQMSGNEPPLETDLPGTVASRFSDNNQLSLYMHWAKMLQANSWNELLSAQNG*
Ga0066388_10356561313300005332Tropical Forest SoilWAQVTGAAKSLIGRRYPANYQMSGNEPPIALDLPGRTMSRFSDNNQLNLYMHWAKVLEAKNWSEIKSAAD*
Ga0070677_1068927223300005333Miscanthus RhizosphereWIQVTGAAKSLIGRRHPANYQMSGNEPPLETDLPGTVASRFSDNNQLSLYMHWAKMLQANSWNELLSAQNG*
Ga0070689_10142149923300005340Switchgrass RhizospherePANYQMSGNEPPIDIDLPGKVKSRFSDNNQLSMYMHWAKVLQAKNWSEIMSAQNG*
Ga0070669_10122482413300005353Switchgrass RhizosphereYQMTGNEPPIEIDLPGIVKSRFSDNNQLSMYMHWAKMLQAKNWSEIMSRQNG*
Ga0070711_10197932113300005439Corn, Switchgrass And Miscanthus RhizosphereNWAQVTSAAKSLIGRRYPANYQMTGNELPVELDLRGRVRNRFSDNNQLSMYMHWAKMLQAKNWSEVLSAQNG*
Ga0070700_10128440913300005441Corn, Switchgrass And Miscanthus RhizosphereGQRFPANYQMSGNEPPIELDLPGTVKSRFSDNNQLSLYMHWAKMLEAKNWGEITSGQNG*
Ga0070681_1139156823300005458Corn RhizosphereVTGAAKSLIGRGYPANYQMSGNEPPIDIDLPGKVKSRFSDNNQLSMYMHWAKVLQAKNWSEIMSAQNG*
Ga0070707_10179151013300005468Corn, Switchgrass And Miscanthus RhizosphereIDLPGRVKSRFSDNNQLSLYMHWAKMLQAKNWDEIMSAENG*
Ga0070686_10017181513300005544Switchgrass RhizosphereEIDLPGTVTSRFSDNNQLSLYMHWAKMLQAKSWSQLLTTQNG*
Ga0070686_10065100433300005544Switchgrass RhizosphereVEIDLPGRTMSRFSDNNQLNLYMHWAKLLQANNWHEIMDARHG*
Ga0070702_10017230143300005615Corn, Switchgrass And Miscanthus RhizosphereQVTGAAKSLIGRRHPANYQMSGNEPPLETDLPGTVASRFSDNNQLSLYMHWAKMLQANSWSEMLSAQNG*
Ga0068864_10069518513300005618Switchgrass RhizosphereRHPANYQMSGNEPPLETDLPGTVASRFSDNNQLSLYMHWAKMLQANSWSEMLSAQNG*
Ga0068864_10228973923300005618Switchgrass RhizosphereQVTGAAKSLVGRRFPANYQMSGKEPPVQIDLPGRVKSRFSDNNQLSLYMHWAKMLEAKSWSELSSATDG*
Ga0066905_10062323123300005713Tropical Forest SoilTGAAKSLIGQRYPANYQMAGNEPPVDLDLRGRVMNRFSDNNQLSLYMHWAKMLQAKNWSEITGAQNG*
Ga0068858_10006325553300005842Switchgrass RhizosphereNYQMSGNEPPLDIDLPGTVTSRFSDNNQLSLYMHWAKMLQAKSWSQLLTTQNG*
Ga0075299_100888913300005883Rice Paddy SoilELDLPGQIKSRFSDNNQLSLYMHWAKMLQAKNWGEIMSTQHG*
Ga0066696_1082613613300006032SoilQVTSAAKSLIGRRYPANYQMTGNDPPVELDLRGQVRNRFSDNNQLTMYMHWAKMLQAKNWSEILGAQNG*
Ga0097621_10109496623300006237Miscanthus RhizosphereMSGNEPPLDIDLPGTVTSRFSDNNQLSLYMHWAKMLQAKSWNELLTTQNG*
Ga0075421_10150649723300006845Populus RhizosphereRVRNRFSDNNQLSMYMHWAKMLQAKNWSEILSAQNG*
Ga0075430_10001417613300006846Populus RhizosphereLIARRYPANYQMSGGGDEIAQNDLPGRLNSRFSDNNQLNLYMHWAKMMEANSWNEIAGTERV*
Ga0075430_10005951253300006846Populus RhizospherePANYQMSGNEPPIEIDLPGSVKSRFSDNNQLSMYMHWAKMLQAKNWSEIMSRQNG*
Ga0075431_10170991123300006847Populus RhizosphereYPANYQMTGNEPPVELDLRGRVRNRFSDNNQLSMYMHWAKMLQAKNWSEILSAQNG*
Ga0075426_1093450513300006903Populus RhizosphereTGAAKSLIGRRHPANYQMSGNEPPIEIDLPGIVKSRFSDNNQLSMYMHWAKMLQAKNWGEIMSRQNG*
Ga0075436_10030662213300006914Populus RhizospherePPIEIDLPGIVKSRFSDNNQLSMYMHWAKMLQAKNWGEIMSRQNG*
Ga0075419_1080686023300006969Populus RhizosphereQMSGNEPPIEIDLPGSVKSRFSDNNQLSMYMHWAKMLQAKNWSEIMSRQNG*
Ga0075419_1091312623300006969Populus RhizosphereQVTAAAKSLIGQRYPANYQMRGDNSPIEIDLPGRVKSRFSDNNQLSLYMHWAKMLQAKNWGEIMSAENG*
Ga0075419_1136846423300006969Populus RhizospherePIEIDLPGQVKSRFSDNNQLNLYMHWAKMLQAKNWGEISSAENG*
Ga0099791_1030439513300007255Vadose Zone SoilDLPGIVKSRFSDNNQLSMYMHWAKMLQAKNWSEIMSRQNG*
Ga0114129_1004635873300009147Populus RhizosphereEIDLPGRVKSRFSDNNQLTLYMHWAKMLQAKNWAEIISAENG*
Ga0114129_1107638323300009147Populus RhizosphereSEEIIQPELPGRLASRFSDNNQLHLYMHWAKMMEANSWNEIAGNERI*
Ga0105094_1073984913300009153Freshwater SedimentRVKSRFSDNNQLSLYMHWAKLLQAKNWREVASASNG*
Ga0075423_1006763913300009162Populus RhizosphereSLIGRRHPANYQMSGNEPPLDIDLPGTVTSRFSDNNQLSLYMHWAKMLQAKSWNQLLTTQNG*
Ga0075423_1011018153300009162Populus RhizosphereQVTGSVKSLIGRRYPANYQMSGNEPPIELDLPGRTMSRFSDNNQLNLYMHWAKVLEAKNWREIKSTAS*
Ga0113563_1266958013300009167Freshwater WetlandsIGQRFPANYQMIGNEPPVDLDLPGRVKSRFSDNNQLSLYMHWAKMLEAENWREVMNAANG
Ga0105347_141899023300009609SoilARSLIGQRFPANYQMSGNEPPIELELPGTVKSRFSDNNQLSLYMHWAKMLEAKNWGEITSGQNG*
Ga0126374_1166804313300009792Tropical Forest SoilGTVKSRFSDNNQRSLYMHWAKMLQAKNWSELLGTQNG*
Ga0126308_1096147113300010040Serpentine SoilQMSGNEPPIEIDLPGRVKSRFSDNNQLSLYMHWAKMLEAKSWSAVSGAIDG*
Ga0126378_1106102213300010361Tropical Forest SoilGRRYPANYQMSGNEPPLEIDLPGTVKSRFSDNNQRSLYMHWAKMLQAKNWSELLGTQNG*
Ga0126379_1261726123300010366Tropical Forest SoilMSGNEPPIALDLPGRTMSRFSDNNQLNLYMHWAKVLEAKNWDEIKSAAS*
Ga0134124_1132410713300010397Terrestrial SoilPANYQMSGNEPPVQIDLPGRVKSRFSDNNQLSLYMHWAKMLEAKSWSEVASGTDG*
Ga0134124_1190443813300010397Terrestrial SoilGNEPPIDIDLPGKVKSRFSDNNQLSMYMHWAKVLQAKNWSEIMSAQNG*
Ga0126383_1284186413300010398Tropical Forest SoilTGAAKSLIGRRYPANYQMSGNEPPLEIDLPGTVKSRFSDNNQRSLYMNWAKMLQAKNWSELLSTQNG*
Ga0105246_1009759643300011119Miscanthus RhizosphereEPPLDIDLPGTVTSRFSDNNQLSLYMHWAKMLQAKSWNQLLTTQNG*
Ga0105246_1052004633300011119Miscanthus RhizosphereLIGRRHPANYQMSGNEPPLETDLPGTVASRFSDNNQLSLYMHWAKMLQANSWSEMLSAQNG*
Ga0137313_110664613300011403SoilWIQVTGAARSLIGQRFPANYQMSGNEPPIELELPGTVKSRFSDNNQLSLYMHWAKMLGAKNWGEITSGQNG*
Ga0137439_104655823300011424SoilVTGAARSLIGQRFPANYQMSGNEPPVEIDLPGRVKSRFSDNNQLSLYMHWAKMLQAENWREVMNAANG*
Ga0137428_111313523300011432SoilYQMSGNEPPVEIDLPGRVKSRFSDNNQLSLYMHWAKLLQANNWREVANASNG*
Ga0137464_108339233300011434SoilSLIGQRFPANYQMRGNEPPVEFDLPGRVKSRFSDNNQLSLYMHWAKMLQAENWREVMNAANG*
Ga0137342_103231113300012171SoilTGSAKSLIGQRYPANYQMSGNEPAVGLELPGRTMSRFSDNNQLNLYMHWAKMLDAQSWSEVLAK*
Ga0137363_1129880013300012202Vadose Zone SoilPANYQMTGNELPVELDLRGRVRNRFSDNNQLSMYMHWAKMLQAKNWSEVLSAQNG*
Ga0137399_1015608443300012203Vadose Zone SoilPVELDLRGRVRNRFSDNNQLSMYMHWAKMLQAKNWSEVLSAQNG*
Ga0137362_1057133633300012205Vadose Zone SoilSLIGRRYPANYQMTGNEPPVELDLRGRVRNRFSDNNQLSMYMHWAKMLQAKNWSEVLSAQNG*
Ga0137360_1108072923300012361Vadose Zone SoilLIGRRYPANYQMSGNEPPIELDLPGRTMSRFSDNNQLNLYMHWAKVLEAKNWSEIKSAAS
Ga0157337_100820623300012483Arabidopsis RhizosphereHPANYQMTGNEPPIEIDLPGIVKSRFSDNNQLSMYMHWAKMLQAKNWSEIMSRQNG*
Ga0157321_102653013300012487Arabidopsis RhizospherePGTVASRFSDNNQLSLYMHWAKMLQANSWSEMLSAQNV*
Ga0157338_102241323300012515Arabidopsis RhizosphereAKSLIGRRHPANYQMSGNEPPLETDLPGTVASRFSDNNQLSLYMHWAKMLQANSWSEMLSAQNG*
Ga0157291_1010710823300012902SoilQMSGNEPPLDIDLPGTVTSRFSDNNQLSLYMHWAKMLQAKSWNQLLTTQNG*
Ga0157301_1016633923300012911SoilSGNEPPLEIDLPGTVTSRFSDNNQLSLYMHWAKMLQAKSWNELLTTQNG*
Ga0137407_1010707713300012930Vadose Zone SoilNWIQVTAAAKSLIGQRYPANYQMRGDNSPIEIDLPGRVKSRFSDNNQLSLYMHWAKMLQAKNWDEIMSAENG*
Ga0157372_1011531813300013307Corn RhizosphereANYQMSGNEPPLELDLPGTVTSRFSDNNQLSLYMHWAKMLQAKSWNELLTTQNG*
Ga0157375_1028499813300013308Miscanthus RhizosphereAARSLIGRRHPANYQMSGNEPPLDIDLPGTVTSRFSDNNQLSLYMHWAKMLQAKSWNQLLTTQNG*
Ga0075347_111431423300014313Natural And Restored WetlandsWIQVTGAAKSLIGQRFPANYQMSGNEAPVELDLPGRVKSRFSDNNQLSLYMHWAKMLQAKNWSELSRATDG*
Ga0075350_110254313300014315Natural And Restored WetlandsIQVTGAAKSLIAQRFPANYQMSGNEAPVELDLPGRVKSRFSDNNQLSLYMHWAKMLQAKNWSELSRATDG*
Ga0075351_101946133300014318Natural And Restored WetlandsRRFPANYQMSGNEPPVELDLPGRVKSRFSDNNQLSLYLHWAKMLQANNWRELASGTNG*
Ga0157380_1084861633300014326Switchgrass RhizosphereEIDLPGRTMSRFSDNNQLNLYMHWAKLLQANNWHEIMDARHG*
Ga0180087_107725013300014872SoilALPGRAMSRFSDNNQLSLYLHWAKMLEAKNWSEILSDKNG*
Ga0180087_111348523300014872SoilSTVKSRFSDNNQLSLYMHWAKMLQAKNWDEVASAGNG*
Ga0180069_115679913300014882SoilPPVEIDLPGRVKSRFSDNNQLSLYMYWAKLLQAKNWREVASASNG*
Ga0173478_1039469923300015201SoilQMSGKEPPVQIDLPGRVKSRFSDNNQLSLYMHWAKMLEAKSWSELASATDG*
Ga0132256_10187710523300015372Arabidopsis RhizospherePGIVKSRFSDNNQLSMYMHWAKMLQAKNWSEIMSRPNG*
Ga0132256_10266187213300015372Arabidopsis RhizosphereMPGIVKSRFSDNNQLSMYMHWAKMLQAKNWSEIMSRQNG*
Ga0184634_1019833133300018031Groundwater SedimentYQMSGNEPPLEIDLPGRVKSRFSDNNQVSLYMHWAKMLQAKNWSEVASANNG
Ga0184621_1011576833300018054Groundwater SedimentIGQRYPANYQMSGNEPPVELDLPGRVKNRFSDNNQLSLYMHWAKMLQAKNWSEITSTQNG
Ga0184617_101828223300018066Groundwater SedimentMSGNEPPIDIDLPGNVKSRFSDNNQLSMYMHWAKVLQAKNWSEIMSAQNG
Ga0184631_1032110723300018070Groundwater SedimentSGNEPAVGLDLPGRTMSRFSDNNQLNLYMHWAKMLDAKGWNEILGKQNG
Ga0184633_1060232513300018077Groundwater SedimentNWAQVTSAAKSLIGQRYPANYQMSGNEPPVELDLPGRVKSRFSDNNQLSLYMHWAKMLEAKNWSEITSTPNG
Ga0184627_1021103133300018079Groundwater SedimentRFPANYQMSGNEPPVEIDLPGRVKSRFSDNNQLSLYMHWAKMLQAKNWSEVLSASNG
Ga0184629_1007217143300018084Groundwater SedimentPANYQMSGNEPPIDIELPGTVKSRFSDNNQLSLYMHWAKMLQAKNWSEVASAGNG
Ga0190269_1105682313300018465SoilLPIEIELPGRVKSRFSDNNQLSLYMHWAKMLEAKSWSAVSAAING
Ga0190270_1288764423300018469SoilMSGNEPPIEIDLPGQVKSRFSDNNQLSLYMHWAKMLQAKNWSEITSAKNG
Ga0190271_1234762223300018481SoilLIGQRFPANYQMSGNEPPIELELPGTVKSRFSDNNQLSLYMHWAKMLEAKNWGEITSGQN
Ga0190264_1062530323300019377SoilQMSGNEPPIGIDLPGQVKSRFSDNNQLSLYMHWAKMLQAKNWSEISRAQNG
Ga0209002_1074044123300025289SoilNYQMRGNEPPVEVDLPGQVKSRFSDNNQLSMYMHWAEMLQGKSWSEIMGRRHG
Ga0209640_1032064733300025324SoilNEPPIDIELPGTVKSRFSDNNQLSLYMHWAKMLQAKNWSEVASANNG
Ga0210143_108447613300025792Natural And Restored WetlandsQVKSRFSDNNQLSMYMHWAEMLQGKSWSEIMGRRHG
Ga0207671_1047650333300025914Corn RhizosphereMSGNEPPLEIDLPGTVTSRFSDNNQLSLYMHWAKMLQAKSWSQLLTTQNG
Ga0207646_1087724313300025922Corn, Switchgrass And Miscanthus RhizosphereRGDNSSIEIDLPGRVKSRFSDNNQLSLYMHWAKMLQAKNWDEIMSAENG
Ga0207681_1144719013300025923Switchgrass RhizosphereYQMSGNEPPLETDLPGTVASRFSDNNQLSLYMHWAKMLQANSWSEMLSAQNG
Ga0208776_100049563300026014Rice Paddy SoilKSLIGARHPANYQMSGNEPPIELDLPGQIKSRFSDNNQLSLYMHWARMLEAKNWGEIMSTQHG
Ga0208002_101361723300026029Natural And Restored WetlandsRGNEPPVDVDLPGQVKSRFSDNNQLSMYMHWAEMLQGKSWSEIMGRRHG
Ga0207703_1033244943300026035Switchgrass RhizosphereMSGNEPPLDIDLPGTVTSRFSDNNQLSLYMHWAKMLQAKSWNQLLTTQNG
Ga0208780_100310213300026046Natural And Restored WetlandsLPGQVKSRFSDNNQLSMYMHWAEMLQGKSWSEIMGRRHG
Ga0209799_100619433300027654Tropical Forest SoilMSGNEPPIALDLPGRTMSRFSDNNQLNLYMHWAKVLEAKNWDEIKSAAS
Ga0209286_132671513300027713Freshwater SedimentRVKSRFSDNNQLSLYMHWAKLLQAKNWREVASASNG
Ga0209074_1052297623300027787Agricultural SoilRHPANYQMSGNEPPLDIDLPGTVTSRFSDNNQLSLYMHWAKMLQAKSWNELLTTQNG
Ga0209726_1034596213300027815GroundwaterSLIGQRFPANYQMAGNEPPVDIDLPGRVKSRFSDNNQLSLYMHWAKMLQAKNWREVVSELNG
Ga0209814_1047774713300027873Populus RhizospherePGRVKSRFSDNNQLTLYMHWAKMLQAKNWAEIISAENG
Ga0209486_1038324923300027886Agricultural SoilNDLPGRLASRFSDNNQLNLYMHWAKMMEANSWNEIAGTERA
Ga0209382_1028749843300027909Populus RhizosphereRVRNRFSDNNQLSMYMHWAKMLQAKNWSEILSAQNG
Ga0209705_1045587413300027979Freshwater SedimentVKSRFSDNNQLSLYMHWAKLLQAKNWHEVASASNG
Ga0210366_1020458213300028420EstuarineQMTGNEPPIEIELPGKVKSRFSDNNQLSMYMHWARMLQAKNWSEVLSAQDG
Ga0307320_1020644213300028771SoilAAKSLIGQRYPANYQMRGYQAPIEIDLPGRAKSRFSDNNQLSMYMHWAKMLQAKNWDEIMSIKNG
Ga0307503_1040442213300028802SoilARSLMGQRFPANYQMSGNEPPIELDLPGTVKSRFSDNNQLSLYMHWAKMLEAKNWGEITSGQNG
Ga0307278_1019310213300028878SoilAAKSLIGQRYPANYQMRGDQAPIEIDLPGRAKSRFSDNNQLSLYMHWAKMLQAKNWDEIMSMKNG
Ga0302046_1026321913300030620SoilNEPPIDIDLPGRVKSRFSDNNQLSLYMHWARMLQAKDWREVLSMQNG
Ga0299913_1138349023300031229SoilNEPPIEIDLPGQVKSRFSDNNQLSLYMHWAKMLQAKNWGEITSAQNG
Ga0307408_10066025733300031548RhizosphereEIVQNDLPGRLASRFSDNNQLNLYMHWARMMEANSWNEIAGTERV
Ga0307408_10251083923300031548RhizospherePANYQMSGNEPPIGLDLPGKIKSRFSDNNQLSFYMHWAKMLQANGWSDITSAQHG
Ga0307469_1032849913300031720Hardwood Forest SoilANYQMTGNEPPIEIDLPGIVKSRFSDNNQLSMYMHWAKMLQAKNWSEIMSRQNG
Ga0307413_1161816623300031824RhizosphereLPIEIELPGRVKSRFSDNNQLSLYMHWAKMLEANSWSAVSGAIHG
Ga0310885_1082005223300031943SoilLETDLPGTVASRFSDNNQLSLYMHWAKMLQANSWNELLSAQNG
Ga0306926_1050181443300031954SoilVKSRFSDNNQRSLYMNWAKMLQAKNWSELLSTQNG
Ga0326597_1176659823300031965SoilIDIDLPGTVKSRFSDNNQLSLYMHWAKMLQAKNWSEVASANNG
Ga0310906_1142233823300032013SoilELDLPGRVKSRFSDNNQLSLYLHWAKMLQANNWRELASGTNG
Ga0315912_1128705423300032157SoilPVELDLPGRVKSRFSDNNQLSLYMHWAKMLQAENWREVMNAANG
Ga0310812_1006734813300032421SoilQVTSAARSLIGRRHPANYQMSGNEPPLDIDLPGTVTSRFSDNNQLSLYMHWAKMLQAKSWNQLLTTQNG
Ga0310812_1048645523300032421SoilIGRRHPANYQMSGNEPPLETDLPGTVASRFSDNNQLSLYMHWAKMLQANSWSEMLSAQNG
Ga0335084_1122543023300033004SoilRFPANYQMSGNEPPVEIDLPGTAMSRFSDNNQLSLYMHWAKTLHAKNWHEIMDANHG
Ga0310810_1020251053300033412SoilLETDLPGTVASRFSDNNQLSLYMHWAKMLQANSWSEMLSAQNG
Ga0310810_1055316913300033412SoilPLETDLPGTVASRFSDNNQLSLYMHWAKMLQANSWNELLSAQNG
Ga0316613_1111529013300033434SoilGNEPPVELDLPGRVKSRFSDNNQLSLYMHWAKMLQAKNWSEVVSAANG
Ga0316626_1157740023300033485SoilSGNEPAVEIDLPGRVKSRFSDNNQLSLYMHWAKMLEAENWREVMNAANG
Ga0364924_143795_3_1973300033811SedimentAKSLIGRRYPANYRMTGNEPPIEIALPGRAMSRFSDNNQLSFYLHWAKMLQAESWQEILSDKNG
Ga0364933_209657_13_1653300034150SedimentMSGDEPPIDIDLPGKVKSRFSDNNQLSMYMHWAKVLQAKNWNEIMSAQNG
Ga0373958_0102013_557_6733300034819Rhizosphere SoilPGTVASRFSDNNQLSLYMHWAKMLQANSWSEMLSAQNG

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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