Metagenome / Metatranscriptome Family F056873

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F056873
Family Type	Metagenome / Metatranscriptome
Number of Sequences	137
Average Sequence Length	72 residues
Representative Sequence	VAPETAVVVVIVALLVGWYGRMWREREGDRSVTRTRAANARKAVWHARWVIVVMGIVVLAIIDVLLHGGGR
Number of Associated Samples	107
Number of Associated Scaffolds	137

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	22.79 %
% of genes near scaffold ends (potentially truncated)	37.23 %
% of genes from short scaffolds (< 2000 bps)	87.59 %
Associated GOLD sequencing projects	102
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (60.584 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (15.329 % of family members)
Environment Ontology (ENVO)	Unclassified (28.467 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (62.774 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 78.87% β-sheet: 0.00% Coil/Unstructured: 21.13%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 137 Family Scaffolds
PF00589	Phage_integrase	24.09
PF03029	ATP_bind_1	5.11
PF12728	HTH_17	2.92
PF13683	rve_3	2.19
PF03259	Robl_LC7	1.46
PF01522	Polysacc_deac_1	0.73
PF00106	adh_short	0.73
PF07699	Ephrin_rec_like	0.73
PF05331	DUF742	0.73
PF01743	PolyA_pol	0.73
PF13193	AMP-binding_C	0.73
PF13592	HTH_33	0.73
PF12686	DUF3800	0.73
PF02775	TPP_enzyme_C	0.73
PF04542	Sigma70_r2	0.73

COG ID	Name	Functional Category	% Frequency in 137 Family Scaffolds
COG1100	GTPase SAR1 family domain	General function prediction only [R]	5.11
COG2229	Signal recognition particle receptor subunit beta, a GTPase	Intracellular trafficking, secretion, and vesicular transport [U]	5.11
COG2018	Predicted regulator of Ras-like GTPase activity, Roadblock/LC7/MglB family	Signal transduction mechanisms [T]	1.46
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.73
COG0617	tRNA nucleotidyltransferase/poly(A) polymerase	Translation, ribosomal structure and biogenesis [J]	0.73
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.73
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.73
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.73
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.73

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	60.58 %
Unclassified	root	N/A	39.42 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	60.58 %
Unclassified	root	N/A	39.42 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	60.58 %
Unclassified	root	N/A	39.42 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	56.93 %
Unclassified	root	N/A	39.42 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	56.20 %
Unclassified	root	N/A	39.42 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	51.09 %
Unclassified	root	N/A	39.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.42 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	10.22 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	1.46 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	1.46 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.73 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.42 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	3.65 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1.46 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	1.46 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.73 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.42 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	2.19 %
Modestobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Modestobacter	0.73 %
Herbiconiux	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Herbiconiux	0.73 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.73 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.73 %
Blastococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus	0.73 %
unclassified Micromonosporaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → unclassified Micromonosporaceae	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.42 %
Micromonosporaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → unclassified Micromonosporaceae → Micromonosporaceae bacterium	0.73 %
Herbiconiux ginsengi	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Herbiconiux → Herbiconiux ginsengi	0.73 %
Micromonospora olivasterospora	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora olivasterospora	0.73 %
Actinomadura atramentaria	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura atramentaria	0.73 %
Streptomyces yerevanensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces yerevanensis	0.73 %
Modestobacter excelsi	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Modestobacter → Modestobacter excelsi	0.73 %
Blastococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus	0.73 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2070309004\|prs_FIHLEPW02RM87M	Not Available	504	Open in IMG/M
2166559005\|cont_contig75121	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	709	Open in IMG/M
3300000956\|JGI10216J12902_104457778	All Organisms → cellular organisms → Bacteria	1312	Open in IMG/M
3300005166\|Ga0066674_10273946	Not Available	796	Open in IMG/M
3300005175\|Ga0066673_10461947	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	747	Open in IMG/M
3300005177\|Ga0066690_10747188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → unclassified Micromonosporaceae → Micromonosporaceae bacterium	642	Open in IMG/M
3300005332\|Ga0066388_101877629	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1068	Open in IMG/M
3300005332\|Ga0066388_102857033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	882	Open in IMG/M
3300005332\|Ga0066388_103066745	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora olivasterospora	854	Open in IMG/M
3300005332\|Ga0066388_105185469	Not Available	661	Open in IMG/M
3300005434\|Ga0070709_10418694	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1003	Open in IMG/M
3300005434\|Ga0070709_10521425	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	905	Open in IMG/M
3300005435\|Ga0070714_102416986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	510	Open in IMG/M
3300005436\|Ga0070713_100211906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	1754	Open in IMG/M
3300005437\|Ga0070710_10027634	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	3027	Open in IMG/M
3300005440\|Ga0070705_100316169	Not Available	1125	Open in IMG/M
3300005451\|Ga0066681_10166514	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1304	Open in IMG/M
3300005451\|Ga0066681_10417767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	824	Open in IMG/M
3300005456\|Ga0070678_101535619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	624	Open in IMG/M
3300005617\|Ga0068859_102946118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	521	Open in IMG/M
3300005764\|Ga0066903_100993705	All Organisms → cellular organisms → Bacteria	1533	Open in IMG/M
3300005764\|Ga0066903_103194365	Not Available	886	Open in IMG/M
3300005764\|Ga0066903_108051328	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	540	Open in IMG/M
3300005764\|Ga0066903_108126562	Not Available	537	Open in IMG/M
3300005841\|Ga0068863_101286307	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	738	Open in IMG/M
3300006046\|Ga0066652_101785183	Not Available	557	Open in IMG/M
3300006172\|Ga0075018_10148648	Not Available	1079	Open in IMG/M
3300006173\|Ga0070716_100198093	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1332	Open in IMG/M
3300006572\|Ga0074051_11731710	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1630	Open in IMG/M
3300006573\|Ga0074055_10017417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1372	Open in IMG/M
3300006573\|Ga0074055_10018137	Not Available	2149	Open in IMG/M
3300006574\|Ga0074056_11863655	Not Available	639	Open in IMG/M
3300006575\|Ga0074053_10024693	Not Available	661	Open in IMG/M
3300006577\|Ga0074050_12049309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	787	Open in IMG/M
3300006579\|Ga0074054_12164960	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	2182	Open in IMG/M
3300006580\|Ga0074049_12906101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	595	Open in IMG/M
3300006604\|Ga0074060_11434807	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	817	Open in IMG/M
3300006605\|Ga0074057_12273196	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1170	Open in IMG/M
3300006755\|Ga0079222_11799003	Not Available	592	Open in IMG/M
3300006755\|Ga0079222_11884048	Not Available	582	Open in IMG/M
3300006796\|Ga0066665_10661724	Not Available	830	Open in IMG/M
3300006797\|Ga0066659_10457753	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1015	Open in IMG/M
3300006797\|Ga0066659_11269094	Not Available	614	Open in IMG/M
3300006804\|Ga0079221_10306365	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	935	Open in IMG/M
3300006804\|Ga0079221_11028215	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	622	Open in IMG/M
3300006806\|Ga0079220_10167981	Not Available	1230	Open in IMG/M
3300006806\|Ga0079220_10824039	All Organisms → cellular organisms → Bacteria	706	Open in IMG/M
3300006852\|Ga0075433_10141683	Not Available	2137	Open in IMG/M
3300006854\|Ga0075425_100389064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1606	Open in IMG/M
3300006903\|Ga0075426_10081886	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2307	Open in IMG/M
3300006903\|Ga0075426_10344968	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1094	Open in IMG/M
3300006914\|Ga0075436_100097780	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura atramentaria	2042	Open in IMG/M
3300006914\|Ga0075436_100744799	Not Available	727	Open in IMG/M
3300006954\|Ga0079219_10178979	Not Available	1173	Open in IMG/M
3300009012\|Ga0066710_101446251	Not Available	1064	Open in IMG/M
3300009098\|Ga0105245_10778599	Not Available	994	Open in IMG/M
3300009137\|Ga0066709_103222029	Not Available	595	Open in IMG/M
3300009156\|Ga0111538_13606247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	537	Open in IMG/M
3300009174\|Ga0105241_10404761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1198	Open in IMG/M
3300009176\|Ga0105242_12342621	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	581	Open in IMG/M
3300009792\|Ga0126374_10163232	Not Available	1366	Open in IMG/M
3300009792\|Ga0126374_10597532	Not Available	814	Open in IMG/M
3300010043\|Ga0126380_10473545	Not Available	953	Open in IMG/M
3300010046\|Ga0126384_10588038	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	973	Open in IMG/M
3300010046\|Ga0126384_11270600	Not Available	682	Open in IMG/M
3300010154\|Ga0127503_10661627	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1016	Open in IMG/M
3300010301\|Ga0134070_10244971	Not Available	669	Open in IMG/M
3300010337\|Ga0134062_10088266	Not Available	1316	Open in IMG/M
3300010337\|Ga0134062_10456159	Not Available	635	Open in IMG/M
3300010358\|Ga0126370_10430284	Not Available	1094	Open in IMG/M
3300010358\|Ga0126370_11304140	Not Available	681	Open in IMG/M
3300010360\|Ga0126372_10184380	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1717	Open in IMG/M
3300010360\|Ga0126372_10258541	All Organisms → cellular organisms → Bacteria	1500	Open in IMG/M
3300010360\|Ga0126372_11885778	Not Available	642	Open in IMG/M
3300010362\|Ga0126377_10987395	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	908	Open in IMG/M
3300010366\|Ga0126379_10507866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1278	Open in IMG/M
3300010371\|Ga0134125_10864781	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	994	Open in IMG/M
3300010373\|Ga0134128_10264480	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1929	Open in IMG/M
3300010376\|Ga0126381_101271620	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1063	Open in IMG/M
3300010396\|Ga0134126_10660194	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1191	Open in IMG/M
3300010397\|Ga0134124_10192055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	1848	Open in IMG/M
3300010398\|Ga0126383_10884141	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	979	Open in IMG/M
3300010398\|Ga0126383_11027831	Not Available	913	Open in IMG/M
3300010398\|Ga0126383_11617575	Not Available	737	Open in IMG/M
3300011106\|Ga0151489_1042887	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	975	Open in IMG/M
3300011107\|Ga0151490_1598935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	952	Open in IMG/M
3300011119\|Ga0105246_10678632	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	900	Open in IMG/M
3300012198\|Ga0137364_10041454	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Modestobacter → Modestobacter excelsi	3016	Open in IMG/M
3300012198\|Ga0137364_10222261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1389	Open in IMG/M
3300012199\|Ga0137383_10095121	Not Available	2160	Open in IMG/M
3300012200\|Ga0137382_10315774	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Herbiconiux → Herbiconiux ginsengi	1092	Open in IMG/M
3300012200\|Ga0137382_10342691	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1047	Open in IMG/M
3300012201\|Ga0137365_10005427	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	10233	Open in IMG/M
3300012208\|Ga0137376_10040711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3753	Open in IMG/M
3300012208\|Ga0137376_10154013	Not Available	1978	Open in IMG/M
3300012285\|Ga0137370_10091884	Not Available	1698	Open in IMG/M
3300012350\|Ga0137372_10120644	Not Available	2174	Open in IMG/M
3300012354\|Ga0137366_10388948	Not Available	1017	Open in IMG/M
3300012361\|Ga0137360_10946929	Not Available	743	Open in IMG/M
3300012473\|Ga0157340_1003781	Not Available	848	Open in IMG/M
3300012951\|Ga0164300_10706932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	611	Open in IMG/M
3300012960\|Ga0164301_10167651	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1364	Open in IMG/M
3300012971\|Ga0126369_10061388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3257	Open in IMG/M
3300012971\|Ga0126369_10117547	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus	2442	Open in IMG/M
3300012971\|Ga0126369_10203957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1909	Open in IMG/M
3300012985\|Ga0164308_11334594	Not Available	653	Open in IMG/M
3300012988\|Ga0164306_10184634	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1451	Open in IMG/M
3300014969\|Ga0157376_10652147	Not Available	1053	Open in IMG/M
3300015371\|Ga0132258_10343890	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3686	Open in IMG/M
3300015372\|Ga0132256_101187148	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	877	Open in IMG/M
3300015374\|Ga0132255_100851879	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1361	Open in IMG/M
3300017947\|Ga0187785_10104684	Not Available	1137	Open in IMG/M
3300018060\|Ga0187765_10299601	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	964	Open in IMG/M
3300018431\|Ga0066655_10688959	Not Available	692	Open in IMG/M
3300018482\|Ga0066669_11034684	Not Available	741	Open in IMG/M
3300019361\|Ga0173482_10633520	Not Available	543	Open in IMG/M
3300020581\|Ga0210399_10453463	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1068	Open in IMG/M
3300021420\|Ga0210394_10053450	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	3525	Open in IMG/M
3300021559\|Ga0210409_10834435	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	795	Open in IMG/M
3300021560\|Ga0126371_10878603	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1041	Open in IMG/M
3300021560\|Ga0126371_13877600	Not Available	504	Open in IMG/M
3300025898\|Ga0207692_10415618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	841	Open in IMG/M
3300025906\|Ga0207699_10001630	All Organisms → cellular organisms → Bacteria	10636	Open in IMG/M
3300025911\|Ga0207654_11087739	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	582	Open in IMG/M
3300025916\|Ga0207663_10608486	Not Available	859	Open in IMG/M
3300026329\|Ga0209375_1200988	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces yerevanensis	758	Open in IMG/M
3300026377\|Ga0257171_1069145	Not Available	619	Open in IMG/M
3300026498\|Ga0257156_1021831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1274	Open in IMG/M
3300027787\|Ga0209074_10567602	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	502	Open in IMG/M
3300031770\|Ga0318521_10553998	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	693	Open in IMG/M
3300032091\|Ga0318577_10568457	Not Available	539	Open in IMG/M
3300032205\|Ga0307472_100114965	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1887	Open in IMG/M
3300032205\|Ga0307472_102396395	Not Available	535	Open in IMG/M
3300032805\|Ga0335078_10726738	Not Available	1225	Open in IMG/M
3300034817\|Ga0373948_0040015	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	978	Open in IMG/M
3300034819\|Ga0373958_0128157	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	619	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.21%
Host-Associated	Host-Associated	16.06%
Engineered	Engineered	0.73%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.75%
Plants	Host-Associated → Plants	16.06%
Aquatic	Environmental → Aquatic	1.46%
Modeled	Engineered → Modeled	0.73%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.68%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.38%
Freshwater	Environmental → Aquatic → Freshwater	0.73%
Sediment	Environmental → Aquatic → Sediment	0.73%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.73%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	65.69%
Loam	Environmental → Terrestrial → Soil → Loam	13.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.49%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.19%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.19%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.19%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.46%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.73%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.73%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.73%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	42.34%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	10.22%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.49%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.30%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.57%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.84%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.84%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.19%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.19%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.19%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.46%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.73%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.73%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.73%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.73%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	15.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.49%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.30%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.57%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	5.84%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.11%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.11%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.65%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.19%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.19%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.46%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.46%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.46%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.46%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.46%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	1.46%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.73%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.73%
Green-Waste Compost	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Green-Waste Compost	0.73%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.73%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.73%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.73%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.73%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.73%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2070309004	Green-waste compost microbial communities at University of California, Davis, USA, from solid state bioreactor - Luquillo Rain Forest, Puerto Rico	Environmental	Open in IMG/M
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006572	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006574	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006579	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006580	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006604	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011106	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMC (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012473	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.12.yng.090610	Host-Associated	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026377	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-B	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300034817	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1	Host-Associated	Open in IMG/M
3300034819	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
prs_05593970	2070309004	Green-Waste Compost	VAPVTAVVVVIVALFVGWYGRMWREREGDRGVTRTRAGNARKAVWHARWVMVVMVIVVLAIIDVLLHGGGR
cont_0121.00005050	2166559005	Simulated	VAPETAVVVVIVALLVGWYGRMWREREGDRSVTRTRAGNARKAVWHARWVIVVMGIVVLAIIDVLLHGGGR
JGI10216J12902_1044577783	3300000956	Soil	VLADTQTVTREAAAVAVIVALLAGWYGRMWREREADRSVMRTRAANARKAVWKARWVIVVVGIVVAATVDVLLHGGG*
Ga0066674_102739462	3300005166	Soil	VLADTQTVTREAAAVAVIVALLAGWYGRMWREREADRRVMRTRGANARKAVWKARWVIVVVGIVVAATVDVLLHGGG*
Ga0066673_104619471	3300005175	Soil	PLLADTQTVASETAVVVVIVALLVGWYGRMWREREGDRSVTRTRAANARKAVWHARWVIVVMGIVVLAIIDMLLHGGGR*
Ga0066690_107471882	3300005177	Soil	PPVLADTQTVTREAAAVAVIVALLAGWYGRMWREREADRSIMRTRGANARKAVWKARWVIVVVGIVVVATVDVLLHGGG*
Ga0066388_1018776292	3300005332	Tropical Forest Soil	VVVVIVALLVGWYGRMWREREGDRGVMRTRAGNARKAVWHARWVMVVMGIVVLAIIDVLLHGGGR*
Ga0066388_1028570332	3300005332	Tropical Forest Soil	MLASTPLLADTQTVAPETAVAVVIVALLVGWYGRMWREREGDRSVTRTRAGNARKAVWHARWVIVVIGIVVLAIIDVLLHGGGR*
Ga0066388_1030667452	3300005332	Tropical Forest Soil	VLADTRTVTTGAAAVAVIVAFLAGWYGRMWREREGDRSVTRTRAANARKAAWKARWAIVIVGIVAVATIDVLVHGGG*
Ga0066388_1051854692	3300005332	Tropical Forest Soil	VTLGAAAVAVIIAVLVGWYGRMWREREGDRTITRTRAANAKRAVWRARVVIVAVGIIAAAAVYVWLHGSQ*
Ga0070709_104186941	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	VVVVIVALLVGWYGRMWREREGDRSVTRTRAANARHAVWHARWVIVVMGIVVLAIIDVLLHGGGR*
Ga0070709_105214252	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	TVAPETAVVVVIVALLVGWYGRMWREREGDRSVTRTRAANARKAVWHARWVIVVMGIVILAIIDVLLHGGGR*
Ga0070714_1024169861	3300005435	Agricultural Soil	VVVVIVALLVGWYGRMWREREGDRTVTRTRAANARRAVWHARWVIVVVGIVVVATVDVLLHGGGR*
Ga0070713_1002119061	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	TVAPETAVVVVIVALLVGWYGRMWREREGDRSVTRTRAANARRAVWHARWVIVVVGIVVVATVDVLLHGGGR*
Ga0070710_100276346	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	VVIVIVALLVGWYGRMWREREGDRSVTRTRAGNARKAVWHARWVIVVMGIVVLAIVDVLLHGGGR*
Ga0070705_1003161691	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	GWYGRMWREREGDRSVTRTRAANARKAVWHARWVIVVMGIVVLAIIDVLLHGGGR*
Ga0066681_101665141	3300005451	Soil	GWYGRMWREREADRSVMRTRAANARKAVWHARWVIVVMGIVVLAIIDMLLHGGGR*
Ga0066681_104177671	3300005451	Soil	VLADTRTVTREAAAVAVIVALLAGWYGRMWREREADRRVMRTRGANARKAVWKARWVIVVVGIVVAATVDVLLHGGG*
Ga0070678_1015356192	3300005456	Miscanthus Rhizosphere	VVIVIVALLVGWYGRMWREREGDRGVTRTRAANARKAVWHARWVIVVVGIVVVATVDVLLHGGGR*
Ga0068859_1029461182	3300005617	Switchgrass Rhizosphere	VVVIVALLVGWYGRMWREREGDRSVTRTRAANARRAVWHARWVIVVVGIVVLAIIDVLLHGGGR*
Ga0066903_1009937054	3300005764	Tropical Forest Soil	VTLGAAAIAVIIAVLVGWYGRMWREREGDRTVTRTRAANARKAVWRARGVIVAVGIIAVAAIYVWLHGSQ*
Ga0066903_1031943651	3300005764	Tropical Forest Soil	VVVVIVALLVGWYGRMWREREGDRSVTRTRAANARKAAWHARWVMVVMGIVVLAIIDVLLHGGR*
Ga0066903_1080513281	3300005764	Tropical Forest Soil	DTQTVAPETAVVVVIVALLVGWYGRMWREREGDRNVTRTRAANARKAVWHARWVIVGMGIVVVALVDVLLHGGGR*
Ga0066903_1081265621	3300005764	Tropical Forest Soil	EGAMLASTPLLADTQTVAPETAVVVVIVALLVGWYGRMWREREGDRSVTRTRAANAKKAVWHARWVIVVMGIVVVATIDVLLHGGGR*
Ga0068863_1012863071	3300005841	Switchgrass Rhizosphere	VVIVIVALLVGWYGRMWREREGDRSVTRTRAGNARKAVWHARWVIVVMGIVVLAIIDVLLHGGGR*
Ga0066652_1017851831	3300006046	Soil	LPGEGTTLASTPLLADTQTVAPETAVVVVIVALLVGWYGRMWREREADRSVMRTRSANARKAVWHARWVIVVVGIVVLAIIDMLLHGGGR*
Ga0075018_101486481	3300006172	Watersheds	MLASTPLLADTRTVAPETAVVVVIVALLVGWYGRMWREREGDRSVTRTRAANARKAVWHARWVIVVMGIVVLAIIDVLLHGGGR*
Ga0070716_1001980932	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	VVVVIVALLVGWYGRMWREREGDRSVTRTRAGNARKAVWHARWVIVVMGIVVLAIVDVLLHGGGR*
Ga0074051_117317103	3300006572	Soil	VVVVIVALLVGWYGRMWREREGDRSVTRTRAANARKAVWHARWVIVVMGIVVLAIIDVLLHGGGR*
Ga0074055_100174172	3300006573	Soil	VPADTQTVTREAAAVAVIIAALAGWYGRMWREREGDRSVTRTRAANARKAVWHARWVIVVMGIVVLAIIDVLLHGGGR*
Ga0074055_100181374	3300006573	Soil	VTREAAAVAVIIAALAGWYGRMWREREGDRNVTRTRAANARKAAWRARGFIVVVGIVAVATVYVWLHGGR*
Ga0074056_118636551	3300006574	Soil	VTREAAAVAVIIAALAGWYGRMWREREGDRSVTRTRAANARKAVWHARWVIE
Ga0074053_100246931	3300006575	Soil	VPADTQTVTREAAAVAVIIAALAGWYGRMWREREGDRNVTRTRAANARKAAWRARGVIVVVGIVAVATVYVWLHGGR*
Ga0074050_120493091	3300006577	Soil	ETAVVVVIVALLVGWYGRMWREREGDRSVTRTRAANARKAVWHARWVIVVMGIVVLAIIDVLLHGGGR*
Ga0074054_121649602	3300006579	Soil	MLASTPLLADTRTVAPETAVVVVIVALLVGWYGRMWREREGDRGVTRTRAGNARKAVWHARWVIVVMGIVVLAIIDVLLHGGGR*
Ga0074049_129061011	3300006580	Soil	VVVVIVALLVGWYGRMWREREGDRSVTRTRAGNARKAVWHARWVIVVMGIVVLAIIDVLLHGGGR*
Ga0074048_130200102	3300006581	Soil	RMWREREGDRSVTRTRATNARKAVWHARWVIVVMGIVVLAIIDVLLHGGGR*
Ga0074060_114348072	3300006604	Soil	SALASTPPLADTRTVAPETAVVVVIVALLVGWYGRMWREREGDRSVTRTRAGNARKAVWHARWVIVVMGIVVLAIIDVLLHGGGR*
Ga0074057_122731962	3300006605	Soil	MLASTPLLADTRTVAPETAVVVVIVALLVGWYGRMWREREGDRSVTRTRAANARHAVWHARWVIVVMGIVVLAIIDVLLHGGGR*
Ga0079222_117990031	3300006755	Agricultural Soil	VVVVIVALLVGWYGRMWREREGDRGVTRTRAANARKAVWHARWVIVVMGIVVLVTIDVLLHGGGR*
Ga0079222_118840481	3300006755	Agricultural Soil	MLASTPQLADTQIVAPETAVVVVIVALLVGWYGRMWREREGDRSVTRTRAANAKKAVWHARWVIVVLGIVVVAIVDMLLHGAGR*
Ga0066665_106617243	3300006796	Soil	VLADTQTVTREAAAVAVIVALLAGWYGRMWREREADRRVMRTRGANARKAVWKARWVIVVVGIVVAATVNMWLHGRGR*
Ga0066659_104577532	3300006797	Soil	WYGRMWREREGDRSITRTRAANARKAVWHARWVIVVVGIVVLAIIDVLLHGGGR*
Ga0066659_112690942	3300006797	Soil	VLADTQTVTREAAAVAVIVALLAGWYGRMWREREADRRFAQTRAANAMKAVWKARGVIVVVGIVVAATVNMWLHGRGR*
Ga0079221_103063652	3300006804	Agricultural Soil	VVLVIVALLVGWYGRMWREREGDRSVTRTRAANAKKAVWHARWVIVVMGIVVVAIVDMLLHGGGR*
Ga0079221_110282151	3300006804	Agricultural Soil	RMWREREGDRSVTRTRAANARKAVWHARWVIVVMGIVVLVTIDVLLHGGGR*
Ga0079220_101679811	3300006806	Agricultural Soil	MPGLPGEGTVLASTPQLADTQIVAPGTAVVVVVVALLVGWYGRMWREREGDRSVTRTRAANAKKAVAHARWVIVVLGIVV
Ga0079220_108240392	3300006806	Agricultural Soil	VVLVIVALLVGWYGRMWREREGDRSITRTRAANARKAVWHARWVIVVMGIVVLVTIDVLLHGGGR*
Ga0075433_101416832	3300006852	Populus Rhizosphere	MLASTPLLADTQTVAPETAVVVVIVALLVGWYGRMWREREGDRGVTRTRAANARKAVWHARWVIVVMGIVVLAIIDVLLHGGGR*
Ga0075425_1003890641	3300006854	Populus Rhizosphere	VVVVIVALLVGWYGRMWREREGDRSVTRTRAANARKAVWHARWVIVVVGIVVVATVDVLLHGGGR*
Ga0075426_100818864	3300006903	Populus Rhizosphere	ALLVGWYGRMWREREGDRGVTRTRAANARKAVWHARWVIVVMGIVVLAIIDVLLHGGGR*
Ga0075426_103449683	3300006903	Populus Rhizosphere	VVVVIVALLVGWYGRMWREREGDRSVTRTRAANAKKAVWHARWVIVVMGIVVVAIVDMLLHSGGR*
Ga0075436_1000977803	3300006914	Populus Rhizosphere	IVALLVGWYGRMWREREGDRSVTRTRAANARKAVWHARWVIVVMGIVVLAIIDVLLHGGGR*
Ga0075436_1007447991	3300006914	Populus Rhizosphere	VLASTPLLADTQIVAPETAVVVVIVALLVGWYGRMWREREGDRSVTRTRAANAKKAVWHARWVIVVMGIVVVAIVDMLLHSGGR*
Ga0079219_101789792	3300006954	Agricultural Soil	MLASTPLLADTQIVAPETAVVVVIVALLVGWYGRMWREREGDRSVTRTRAANAKKAVAHARWVIVVLGIVVVAIVDMLLHGGGR*
Ga0066710_1014462511	3300009012	Grasslands Soil	VLADTQTVTREAAAVAVIVALLAGWYGRMWREREADRRFAQTRAANAMKAVWKARGVIVVVGIVVVATVNMWLHGRGR
Ga0105245_107785992	3300009098	Miscanthus Rhizosphere	VAPETAVVIVIVALLVGWYGRMWREREGDRSVTRTRAGNARKAVWHARWVIVVMGIVVLAIVDVLLHGGGR*
Ga0066709_1032220291	3300009137	Grasslands Soil	VLADTQTVTREASAVAVIVALLARWYGRMWREREADRSVIRTRRANARKAGCKAPGLIAVVGIAVVATLDVL
Ga0111538_136062472	3300009156	Populus Rhizosphere	VAPETAVVVVIVALLVGWYGRMWREREGDRGVTRTRAANARKAVWHARWVIVVMGIVVLAIIDVLLHGGGR*
Ga0105241_104047612	3300009174	Corn Rhizosphere	VAPETAVVVVIVALLVGWYGRMWREREGDRGVTRTRAANARKAVWHARWVIVVMGIVVLAIVDVLLHGGGR*
Ga0105242_123426211	3300009176	Miscanthus Rhizosphere	VAPETAVVIVIVALLVGWYGRMWREREGDRSVTRTRAANARRAVWHARWVIVVVGIVVVATVDVLLHGGGR*
Ga0126374_101632322	3300009792	Tropical Forest Soil	VVPETAVVVVIVALLVGWYGRMWREREGDRSVTRTRAANARKAAWHARWVMVVMGIVVLAIIDVLLHGGR*
Ga0126374_105975322	3300009792	Tropical Forest Soil	DAQTVAPETAGVVVIVARLVGGYGRMWREREGDRSVTRTRAANAKKAVWHARWVIVVMGIVVVATIDVLLHGGGR*
Ga0126380_104735451	3300010043	Tropical Forest Soil	VTREAAAVAVIVALLAGWYGRMWREREADRSVMRTRAANAKKAVWKARWAIVVVGIVVVATVDVLMHGGG*
Ga0126384_105880381	3300010046	Tropical Forest Soil	VTGEAAAVAVIVALLVGWYGRMWREREGDRSVTRTRAANARKAAWKARWAIVIVGIVVVAYIDVLAHGGG*
Ga0126384_112706001	3300010046	Tropical Forest Soil	VAPETAVVVVIVALLVGWYGRMWREREGDRGVTRTRAGNARKAVWHARWVMVVMGIVVLAIIDVLLHGGR*
Ga0127503_106616272	3300010154	Soil	VAPETAVVVVIVALLVGWYGRMWREREGDRSVTRTRAANARKAVWHARWVIVVMGIVVLAIIDVLLHGGGR*
Ga0134070_102449711	3300010301	Grasslands Soil	PVLADTQTVTREAAAVAVIVALLAGWYGRMWREREADRRVMRTRGANARKAVWKARWVIVVVGIVVAATVDVLLHGGG*
Ga0134062_100882661	3300010337	Grasslands Soil	VASETAVVVVIVALLVGWYGRMWREREGDRSVTRTRAANARKAVWHARWVIVVMGIVVLAIIDMLLHGGGR*
Ga0134062_104561591	3300010337	Grasslands Soil	VTREAAAVAVIVALLAGWYGRMWREREADRRVMRTRGANARKAVWKARWVIVVVGIVVAATVDVLLHGGG*
Ga0126370_104302842	3300010358	Tropical Forest Soil	VLAETRTVTGGAAAVAVIVALLVGWYGRMWREREGDRSVTRTRAANAKKAVWKARWAIVIVGIVVVAYIDVLAHGGG*
Ga0126370_113041401	3300010358	Tropical Forest Soil	VAPETAVVVVIVALLVGWYGRMWREREGDRNVTRTRAANARKAVWHARWVIVGMGIVVLAIIDVLLHGGGR*
Ga0126372_101843801	3300010360	Tropical Forest Soil	ETAVVVVIVALLVGWYGRMWREREGDRNVTRTRAANARKAVWHARWVIVGMGIVVVALVDVLLHGGGR*
Ga0126372_102585413	3300010360	Tropical Forest Soil	VTLGAAAVAVIIAVLVGWYGRMWREREGDRTVTRTRAANARKAVWRARGVIVAVGIIAVAAIYVWLHGSQ*
Ga0126372_118857781	3300010360	Tropical Forest Soil	VVPETAVVVVIVALLVGWYGRMWREREGDRSVTRTRAANARKAAWHARWVMVVMGIVVLAIIDVLLHGGGR*
Ga0126377_109873953	3300010362	Tropical Forest Soil	VVPETAVVVVIVALLVGWYGRMWREREGDRSVTRTRAGNARKAVWHARWVIVVIGIVVLAIIDVLLHGGGR*
Ga0126379_105078661	3300010366	Tropical Forest Soil	VLAETRTVTGGAAAVAVIVALLVGWYGRMWREREGDRSVTRTRAANAKKAAWKARWAIVIVGIVIVAYIDVLAHGGG*
Ga0134125_108647812	3300010371	Terrestrial Soil	VAPETAVVIVIVALLVGWYGRMWREREGDRSVTRTRAGNARKAVWHARWVIVVMGIVVLAIIDVLLHGGGR*
Ga0134128_102644801	3300010373	Terrestrial Soil	VAPETAVVVVIVALLVGWYGRMWREREGDRSVTRTRAGNARKAVWHARWVIVVMGIVVLAIVDVLLHGGGR*
Ga0126381_1012716201	3300010376	Tropical Forest Soil	VAPETAVVVVIVALLVGWYGRMWREREGDRSVTRTRAANAKKAVWHARWVIVVMGIVVVATIDVLLHGGGR*
Ga0134126_106601941	3300010396	Terrestrial Soil	IVALLVGWYGRMWREREGDRSVTRTRAGNARKAVWHARWVIVVMGIVVLAIVDVLLHGGGR*
Ga0134124_101920555	3300010397	Terrestrial Soil	VVVIVALLVGWYGRMWREREGDRSVTRTRAGNARKAVWHARWVIVVVGIVVVATVDVLLHGGGR*
Ga0126383_108841412	3300010398	Tropical Forest Soil	VVPETAVVVVIVALLVGWYGRMWREREGDRAVTRTRAGNARKAVWHARWVMVVMGIVVLAIIDVLLHGGGR*
Ga0126383_110278311	3300010398	Tropical Forest Soil	VTGEAAAVAVIVALLVGWYGRMWREREGDRSVTRTRAANAKKAVWKARWAIVIVGIVVVAYIDVLAHGGG*
Ga0126383_116175752	3300010398	Tropical Forest Soil	VVIVALLVGWYGRMWREREGDRSVTRTRAANARKAAWHARWVMVVMGIVVLAIIDVLLHGGGR*
Ga0151489_10428871	3300011106	Soil	PQLADTRTVAPETAVVVVIVALLVGWYGRMWREREGDRSVTRTRAGNARKAVWHARWVIVVMGIVVLAIIDVLLHGGGR*
Ga0151490_15989352	3300011107	Soil	VAPETAVVVVIVALLVGWYGRMWREREGDRSVTRTRAGNARKAVWHARWVIVVMGIVVLAIIDVLLHGGGR*
Ga0105246_106786321	3300011119	Miscanthus Rhizosphere	VAPETAVVIVIVALLVGWYGRMWREREGDRSVTRTRAANARHAVWHARWVIVVMGIVVLAIIDVLLHGGGR*
Ga0137364_100414545	3300012198	Vadose Zone Soil	VAPETAVVVVIVALLVGWYGRMWREREADRSVMRIRAANARKAVWKARWVIVVVGIVVVATVDVLLHGGG*
Ga0137364_102222611	3300012198	Vadose Zone Soil	TAVVVVIVALLVGWYGRMCREREGDRSVMRTRAANARKAVWHARWVIVVMGIVVVAIVDMLLHGGGR*
Ga0137383_100951211	3300012199	Vadose Zone Soil	MPGLPGEGITLAFTPVLADTQTVTREAAAVAVIVALLAGWYGRMWREREADRRVMRTRGANARKAVWKARWVIVVVGIVVAATVDVLLHGGG*
Ga0137382_103157741	3300012200	Vadose Zone Soil	LSPPVLADTQTVTREAAAVAVIVALLAGWYGRMWREREADRRIMRTRGANARKAVWKARWVIVVVGIVVAATVDVLLHGGG*
Ga0137382_103426911	3300012200	Vadose Zone Soil	LSPPVLADTQTVTREAAAVAVIVALLAGWYGRMWREREADRSVMRIRAANARKAVWKARWVIVVVGIVVVATVDVLLHGGG*
Ga0137365_100054271	3300012201	Vadose Zone Soil	VTREAAAVAVIVALLAGWYGRMWREREADRRVMRTRGANARKAVWQARWVIVVVGIVVAATVDVLLHGGG*
Ga0137376_100407116	3300012208	Vadose Zone Soil	MPGLPGEGITLAFTPVLADTQTVTREAAAVAVIVALLAGWYGRMWREREADRSVMRTRGANARKAVWKARWVIVVVGIVVVATVDVLLHGGG*
Ga0137376_101540133	3300012208	Vadose Zone Soil	VTREAAAVAVIVALLAGWYGRMWREREADRRFAQTRAANAMKAVWKARGGIVVV
Ga0137370_100918841	3300012285	Vadose Zone Soil	VTREAAAVAVIVALLAGWYGRMWREREADRSIMRTRGANARKAVWKARWVIVVVGIVVAATVDVLLHGGG*
Ga0137372_101206442	3300012350	Vadose Zone Soil	VTREAAAVAVIVALLAGWYGRMWREREADRSFAQTRAANAMKAVWKARGVIVVVGIVVAATVNMWLHGRGR*
Ga0137366_103889481	3300012354	Vadose Zone Soil	VTREAAAVAVIVALLAGWYGRMWREREADRSFAQTRAANAMKAVWKARGVIVVVGIVAAATVYVWLHGGR*
Ga0137360_109469291	3300012361	Vadose Zone Soil	GLPGEGITLAFTPVLADTQTVTREAAAVAVIVALLAGWYGRMWREREADRSVMRTRGANARKAVWKARWVIVVVGIVVAATVDVLLRGGG*
Ga0157340_10037811	3300012473	Arabidopsis Rhizosphere	VAAETAVVVVIVALLVGWYGRMWREREGDRSITRTRAANARKAVWHARWVIVVMGIVV
Ga0164300_107069321	3300012951	Soil	AETAVVVVIVALLVGWYGRMWREREGDRSVTRTRAANARKAVWHARWVIVVMGIVVLAIIDVLLHGGGR*
Ga0164301_101676511	3300012960	Soil	VAAETAVVVVIVALLVGWYGRMWREREGDRSVTRTRAANARHAVWHARWVIVVMGIVVLAIIDVLLHGGGR*
Ga0126369_100613881	3300012971	Tropical Forest Soil	LLVGWYGRMWREREGDRSVTRTRAANAKKAVWKARWAIVIVGIVVVAYIDVLAHGGG*
Ga0126369_101175473	3300012971	Tropical Forest Soil	VLADTQTVTREAAAVAVIVALAAGWYGRMWREREGDRSVTRTRAANARKAVWKARWAIVIVGIVAVATIDVLVHGGG*
Ga0126369_102039573	3300012971	Tropical Forest Soil	VAPETAVVVVIVALLVGWYGRMWREREGDRSVTRTRAGNARKAVWHARWVIVVIGIVVLAIIDVLLHGGR*
Ga0164308_113345941	3300012985	Soil	VAPETAVVVVIVALLVGWYGRMWREREGDRSVTRTRAANARHAVWHARWIIVVIGIVVLAMIDVLLHGGGR*
Ga0164306_101846342	3300012988	Soil	VAAETAVVVVIVALLVGWYGRMWREREGDRSVTRTRAANARKAVWHARWVIVVMGIVVLAIIDVLLHGGGR*
Ga0157376_106521471	3300014969	Miscanthus Rhizosphere	LAPETAVVVVIVALLVGWYGRMWREREGDRSVTRTRAGNARKAVWHARWVIVVMGIVVLAIVDVLLHGGGR*
Ga0132258_103438903	3300015371	Arabidopsis Rhizosphere	VAAETAVVVVIVALLVGWYGRMWREREGDRSVMRTRAANARKAVWHARWVIVVMGIVVLVTIDVLLHGGGR*
Ga0132256_1011871481	3300015372	Arabidopsis Rhizosphere	PGEGTVLASTPLLADTQTVAPETAVVVVIVALLVGWYGRMWREREGDRSITRTRAANARKAVWHARWVIVVMGIVVLVTIDVLLHGGGR*
Ga0132255_1008518792	3300015374	Arabidopsis Rhizosphere	VAPETAVVVVIVALLVGWYGRMWREREGDRSITRTRAANARNAVWHARWVIVVMGIVVLAIVDVLLHGGGR*
Ga0187785_101046841	3300017947	Tropical Peatland	ASFHPSCQPILRTVTLEAAAVAVIIAALLGWYGRMWREREGDRSVTRTRAANAKKAVWKARGVILVVGIVAAGAVYVWLHGSQ
Ga0187765_102996012	3300018060	Tropical Peatland	VVVVIVALLVGWYGRMWREREGDRGVTRTRAGNARKAVWHARWVMVVMGIVVLAIIDVLLHGGGR
Ga0066655_106889591	3300018431	Grasslands Soil	VLADTQTVTREAAAVAVIVALLAGWYGRMWREREADRRVMRTRGANARKAVWHARWVIVVMGIVVLAIIDVLLHGGGR
Ga0066669_110346841	3300018482	Grasslands Soil	MPGLPGEGTTLASIPLLADTQTVAPETAVVVVIVALLVGWYGRMWREREADRSVMRIRAANARKAVWKARWVIVVVGIVVAATVDVLLHGGG
Ga0173482_106335202	3300019361	Soil	MDSFRLTLAFTPAPADTQTVTREAAAVAVIIAALAGWYGRMWREWEGDRSVTRTRAANAKKAVWKARGVIVVVGIAAVAAVYVWLHGGR
Ga0210399_104534633	3300020581	Soil	VVVVIVALLVGWYGRMWREREGDRSVTRTRAGNARKAVWHARWVIVVMGIVVLAIIDVLL
Ga0210394_100534502	3300021420	Soil	MLASTPLLADTRTVASETAVVVVIVALLVGWYGRMWREREGDRSVTRTRAANARKAVWHARWVIVVMGIVVLAIIDVLLHGGGR
Ga0210409_108344353	3300021559	Soil	VVVVIVALLVGWYGRMWREREGDRSVTRTRAANARKAVWHARWVIVVMGIVVLA
Ga0126371_108786033	3300021560	Tropical Forest Soil	ADTQTVTREAAAVAVIVALAAGWYGRMWREREGDRSVTRTRAANARKAVWKARWAIVIVGIVAVATIDVLVHGGG
Ga0126371_138776001	3300021560	Tropical Forest Soil	VLAETRTVTGGAAAVAVIVALLVGWYGRMWREREGDRSVTRTRAANARKAAWKARWAIVIVGIVVVAYIDVLAHGGG
Ga0207692_104156181	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	VVVVIVALLVGWYGRMWREREGDRSVTRTRAGNARKAVWHARWVIVVMGIVVLAIVDVLLHGGGR
Ga0207699_100016305	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	VVIVIVALLVGWYGRMWREREGDRSVTRTRAGNARKAVWHARWVIVVMGIVVLAIIDVLLHSGGR
Ga0207654_110877391	3300025911	Corn Rhizosphere	VVIVIVALLVGWYGRMWREREGDRSVTRTRAGNARQAVWHARWVIVVMGIVVLAIVDVLLHGGGR
Ga0207663_106084863	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	VVIVIVALLVGWYGRMWREREGDRSVTRTRAGNARKAVWHARWVIVVMGIVVLAIIDVL
Ga0209375_12009882	3300026329	Soil	PVLADTQTVTREAAAVAVIVALLAGWYGRMWREREADRRVMRTRGANARKAVWKARWVIVVVGIVVAATVDVLLHGGG
Ga0257171_10691451	3300026377	Soil	TVTREAAAVAVIVALLAGWYGRMWREREADRSVMRTRGANARKAVWKARWVIVVVGIVVVATVDVLLHGGG
Ga0257156_10218311	3300026498	Soil	VAPETAVVVVIVALLVGWYGRMWREREGDRSITRTRAGNARKAVWHARWVIVVMGIVVLAIIDVLLHGGGR
Ga0209074_105676022	3300027787	Agricultural Soil	LASTPQLADTQIVAPETAVVVVIVALLVGWYGRMWREREGDRGVTRTRAANARKAVWHARWVIVVMGIVVLVTIDVLLHGGGR
Ga0318521_105539981	3300031770	Soil	VAPVTAVVVVIVALLVGWYGRMWREREGDRSVTRTRAANARHAVWHARWVIVVMGIVVLAIIDVLLHGGGR
Ga0318577_105684571	3300032091	Soil	VVVVIVALFVGWYGRMWREREGDRGVTRTRAGNARKAVWHARWVMVVMVIVVLAIIDVLLHGGGR
Ga0307472_1001149651	3300032205	Hardwood Forest Soil	GRMWREREGDRSVTRTRAGNARKAVWHARWVIVVMGIVVLAIIDVLLHGGGR
Ga0307472_1023963951	3300032205	Hardwood Forest Soil	WYGRMWREREGDRGVTRTRAGNARKAVWRARGAIVVVGIVAVTIVYVWLHGGR
Ga0335078_107267381	3300032805	Soil	RPVAPETAVVVVIVALLVGWYGRMWREREGDRSVTRTRAANARKAVWHARWIIVVMGIVVLAIIDVLLHGGGR
Ga0373948_0040015_422_637	3300034817	Rhizosphere Soil	VAAETAVVVVIVALLVGWYGRMWREREGDRNITRTRAANARKAVWHARWVIVVMGIVVLAIIDVLLHGGGR
Ga0373958_0128157_390_605	3300034819	Rhizosphere Soil	VAPETAVVVVIVALLVGWYGRMWREREGDRSVTRTRAANARHAVWHARWVIVVMGIVVLVTIDVLLHGGGR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F056873

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences