Metagenome Family F056943

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F056943
Family Type	Metagenome
Number of Sequences	137
Average Sequence Length	54 residues
Representative Sequence	MQIHFTDFVTAANLLVLLGIYRKMSIIVYQHKLMWTDFAERKGISANGKHAASV
Number of Associated Samples	98
Number of Associated Scaffolds	137

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	81.62 %
% of genes near scaffold ends (potentially truncated)	24.09 %
% of genes from short scaffolds (< 2000 bps)	81.75 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (56.204 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (16.788 % of family members)
Environment Ontology (ENVO)	Unclassified (23.358 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.365 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 46.34% β-sheet: 2.44% Coil/Unstructured: 51.22%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 137 Family Scaffolds
PF13392	HNH_3	32.85
PF09374	PG_binding_3	8.03
PF06325	PrmA	7.30
PF13472	Lipase_GDSL_2	3.65
PF08241	Methyltransf_11	2.19
PF13578	Methyltransf_24	1.46
PF05838	Glyco_hydro_108	1.46
PF05711	TylF	1.46
PF12847	Methyltransf_18	0.73
PF13432	TPR_16	0.73
PF13489	Methyltransf_23	0.73
PF01546	Peptidase_M20	0.73
PF00535	Glycos_transf_2	0.73
PF06831	H2TH	0.73
PF05050	Methyltransf_21	0.73
PF13550	Phage-tail_3	0.73
PF01757	Acyl_transf_3	0.73
PF13649	Methyltransf_25	0.73
PF12873	DUF3825	0.73
PF00883	Peptidase_M17	0.73

COG ID	Name	Functional Category	% Frequency in 137 Family Scaffolds
COG2264	Ribosomal protein L11 methylase PrmA	Translation, ribosomal structure and biogenesis [J]	7.30
COG2890	Methylase of polypeptide chain release factors	Translation, ribosomal structure and biogenesis [J]	7.30
COG3897	Protein N-terminal and lysine N-methylase, NNT1/EFM7 family	Posttranslational modification, protein turnover, chaperones [O]	7.30
COG3926	Lysozyme family protein	General function prediction only [R]	1.46
COG0260	Leucyl aminopeptidase	Amino acid transport and metabolism [E]	0.73
COG0266	Formamidopyrimidine-DNA glycosylase	Replication, recombination and repair [L]	0.73

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	56.20 %
Unclassified	root	N/A	43.80 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	56.20 %
Unclassified	root	N/A	43.80 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	56.20 %
Unclassified	root	N/A	43.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.80 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	16.06 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	12.41 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	8.76 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.46 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.80 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	10.95 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	5.11 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4.38 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.46 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	1.46 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.46 %
Deinococcus-Thermus	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus	0.73 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.73 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.73 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.73 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.73 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.80 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.84 %
Acidobacteria bacterium SCGC AG-212-P17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCGC AG-212-P17	5.11 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	5.11 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4.38 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.46 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	1.46 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.46 %
Deinococci	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	0.73 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.73 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.73 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.73 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.73 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.80 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.84 %
Acidobacteria bacterium SCGC AG-212-P17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCGC AG-212-P17	5.11 %
Pseudanabaenales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales	3.65 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	2.92 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.46 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1.46 %
Cyanophyceae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae	1.46 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	0.73 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.73 %
Gemmatales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales	0.73 %
Aurantimonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae	0.73 %
Deinococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales	0.73 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.73 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.73 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.73 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.80 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.84 %
Acidobacteria bacterium SCGC AG-212-P17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCGC AG-212-P17	5.11 %
Leptolyngbyaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae	3.65 %
Shinella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Shinella	2.92 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	1.46 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1.46 %
Cyanophyceae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae	1.46 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	0.73 %
Stenotrophomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Stenotrophomonas	0.73 %
Polaromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas	0.73 %
Deinococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae	0.73 %
Aurantimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae → Aurantimonas	0.73 %
unclassified Oxalobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae	0.73 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.73 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.73 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.80 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.84 %
Acidobacteria bacterium SCGC AG-212-P17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCGC AG-212-P17	5.11 %
Leptolyngbya	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Leptolyngbya	3.65 %
Shinella daejeonensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Shinella → Shinella daejeonensis	2.92 %
Granulicella mallensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	1.46 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1.46 %
Cyanophyceae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae	1.46 %
Deinococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus	0.73 %
unclassified Polaromonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas → unclassified Polaromonas	0.73 %
Gemmata	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Gemmata	0.73 %
unclassified Stenotrophomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Stenotrophomonas → unclassified Stenotrophomonas	0.73 %
Aurantimonas coralicida	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae → Aurantimonas → Aurantimonas coralicida	0.73 %
Oxalobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium	0.73 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.73 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.73 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.80 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.84 %
Acidobacteria bacterium SCGC AG-212-P17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCGC AG-212-P17	5.11 %
unclassified Leptolyngbya	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Leptolyngbya → unclassified Leptolyngbya	3.65 %
Shinella daejeonensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Shinella → Shinella daejeonensis	2.92 %
Granulicella mallensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	1.46 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1.46 %
Cyanophyceae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae	1.46 %
Polaromonas sp. 35-63-35	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas → unclassified Polaromonas → Polaromonas sp. 35-63-35	0.73 %
unclassified Gemmata	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Gemmata → unclassified Gemmata	0.73 %
Stenotrophomonas sp. BIGb0135	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Stenotrophomonas → unclassified Stenotrophomonas → Stenotrophomonas sp. BIGb0135	0.73 %
Deinococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus	0.73 %
Aurantimonas coralicida	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae → Aurantimonas → Aurantimonas coralicida	0.73 %
Oxalobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium	0.73 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.73 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.73 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.80 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.84 %
Acidobacteria bacterium SCGC AG-212-P17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCGC AG-212-P17	5.11 %
Leptolyngbya sp. SIOISBB	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Leptolyngbya → unclassified Leptolyngbya → Leptolyngbya sp. SIOISBB	3.65 %
Shinella daejeonensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Shinella → Shinella daejeonensis	2.92 %
Granulicella mallensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	1.46 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1.46 %
Cyanophyceae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae	1.46 %
Gemmata sp. JC717	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Gemmata → unclassified Gemmata → Gemmata sp. JC717	0.73 %
Polaromonas sp. 35-63-35	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas → unclassified Polaromonas → Polaromonas sp. 35-63-35	0.73 %
Stenotrophomonas sp. BIGb0135	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Stenotrophomonas → unclassified Stenotrophomonas → Stenotrophomonas sp. BIGb0135	0.73 %
Deinococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus	0.73 %
Aurantimonas coralicida	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae → Aurantimonas → Aurantimonas coralicida	0.73 %
Oxalobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium	0.73 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.73 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.73 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.73 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459010\|GIO7OMY01DCTKU	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus	503	Open in IMG/M
3300002568\|C688J35102_120711202	Not Available	1398	Open in IMG/M
3300002906\|JGI25614J43888_10154392	Not Available	613	Open in IMG/M
3300003321\|soilH1_10295679	All Organisms → cellular organisms → Bacteria	2979	Open in IMG/M
3300004153\|Ga0063455_101087591	Not Available	589	Open in IMG/M
3300005177\|Ga0066690_10829342	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300005178\|Ga0066688_10297819	Not Available	1040	Open in IMG/M
3300005329\|Ga0070683_100040248	All Organisms → cellular organisms → Bacteria	4296	Open in IMG/M
3300005329\|Ga0070683_100268577	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1622	Open in IMG/M
3300005332\|Ga0066388_103270534	Not Available	828	Open in IMG/M
3300005434\|Ga0070709_10305209	Not Available	1163	Open in IMG/M
3300005434\|Ga0070709_10415037	Not Available	1008	Open in IMG/M
3300005434\|Ga0070709_11258296	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCGC AG-212-P17	596	Open in IMG/M
3300005435\|Ga0070714_101847180	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300005435\|Ga0070714_102248893	Not Available	531	Open in IMG/M
3300005436\|Ga0070713_100566681	Not Available	1077	Open in IMG/M
3300005437\|Ga0070710_11068198	Not Available	591	Open in IMG/M
3300005439\|Ga0070711_100180123	All Organisms → cellular organisms → Bacteria	1617	Open in IMG/M
3300005439\|Ga0070711_101172922	Not Available	664	Open in IMG/M
3300005526\|Ga0073909_10116543	All Organisms → cellular organisms → Bacteria	1076	Open in IMG/M
3300005535\|Ga0070684_100797451	Not Available	883	Open in IMG/M
3300005537\|Ga0070730_10025164	All Organisms → cellular organisms → Bacteria → Proteobacteria	4560	Open in IMG/M
3300005537\|Ga0070730_10051054	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2986	Open in IMG/M
3300005537\|Ga0070730_10201641	All Organisms → cellular organisms → Bacteria	1328	Open in IMG/M
3300005537\|Ga0070730_10420129	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCGC AG-212-P17	864	Open in IMG/M
3300005539\|Ga0068853_100204755	All Organisms → cellular organisms → Bacteria	1797	Open in IMG/M
3300005542\|Ga0070732_10018550	All Organisms → cellular organisms → Bacteria	3899	Open in IMG/M
3300005542\|Ga0070732_10059009	All Organisms → cellular organisms → Bacteria	2226	Open in IMG/M
3300005542\|Ga0070732_10472612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Leptolyngbya → unclassified Leptolyngbya → Leptolyngbya sp. SIOISBB	759	Open in IMG/M
3300005542\|Ga0070732_10601895	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	667	Open in IMG/M
3300005575\|Ga0066702_10252809	Not Available	1074	Open in IMG/M
3300005575\|Ga0066702_10547335	Not Available	700	Open in IMG/M
3300005575\|Ga0066702_10894601	Not Available	530	Open in IMG/M
3300005578\|Ga0068854_101233008	Not Available	671	Open in IMG/M
3300005614\|Ga0068856_101353798	Not Available	727	Open in IMG/M
3300005616\|Ga0068852_100129233	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2324	Open in IMG/M
3300005764\|Ga0066903_100040683	All Organisms → cellular organisms → Bacteria	5477	Open in IMG/M
3300005764\|Ga0066903_102975024	Not Available	918	Open in IMG/M
3300005764\|Ga0066903_105951566	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	639	Open in IMG/M
3300005834\|Ga0068851_10114487	All Organisms → cellular organisms → Bacteria → Proteobacteria	1443	Open in IMG/M
3300006028\|Ga0070717_10057294	All Organisms → cellular organisms → Bacteria	3221	Open in IMG/M
3300006028\|Ga0070717_10183220	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1826	Open in IMG/M
3300006041\|Ga0075023_100006977	All Organisms → cellular organisms → Bacteria	2834	Open in IMG/M
3300006163\|Ga0070715_10104682	Not Available	1326	Open in IMG/M
3300006163\|Ga0070715_10450352	Not Available	726	Open in IMG/M
3300006163\|Ga0070715_10899397	All Organisms → cellular organisms → Bacteria → Terrabacteria group	545	Open in IMG/M
3300006173\|Ga0070716_101048017	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	647	Open in IMG/M
3300006175\|Ga0070712_100291080	Not Available	1318	Open in IMG/M
3300006800\|Ga0066660_10320660	All Organisms → cellular organisms → Bacteria → Proteobacteria	1245	Open in IMG/M
3300006806\|Ga0079220_11526870	Not Available	574	Open in IMG/M
3300006854\|Ga0075425_100624281	All Organisms → cellular organisms → Bacteria → Proteobacteria	1239	Open in IMG/M
3300006871\|Ga0075434_100031566	All Organisms → cellular organisms → Bacteria → Proteobacteria	5223	Open in IMG/M
3300006914\|Ga0075436_100602843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas → unclassified Polaromonas → Polaromonas sp. 35-63-35	809	Open in IMG/M
3300006914\|Ga0075436_101527873	Not Available	507	Open in IMG/M
3300006954\|Ga0079219_11754956	Not Available	578	Open in IMG/M
3300007788\|Ga0099795_10509527	Not Available	562	Open in IMG/M
3300009093\|Ga0105240_10473719	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCGC AG-212-P17	1397	Open in IMG/M
3300009093\|Ga0105240_10539031	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae	1293	Open in IMG/M
3300009098\|Ga0105245_12629664	Not Available	556	Open in IMG/M
3300009174\|Ga0105241_11040014	Not Available	768	Open in IMG/M
3300009545\|Ga0105237_11447915	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Leptolyngbya → unclassified Leptolyngbya → Leptolyngbya sp. SIOISBB	693	Open in IMG/M
3300009551\|Ga0105238_11238023	Not Available	771	Open in IMG/M
3300010043\|Ga0126380_11316180	Not Available	630	Open in IMG/M
3300010046\|Ga0126384_12083055	Not Available	544	Open in IMG/M
3300010358\|Ga0126370_10223825	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1440	Open in IMG/M
3300010358\|Ga0126370_10519364	Not Available	1010	Open in IMG/M
3300010358\|Ga0126370_11363746	Not Available	668	Open in IMG/M
3300010359\|Ga0126376_10022830	All Organisms → cellular organisms → Bacteria → Acidobacteria	4118	Open in IMG/M
3300010359\|Ga0126376_13102210	Not Available	514	Open in IMG/M
3300010360\|Ga0126372_10220190	All Organisms → cellular organisms → Bacteria	1600	Open in IMG/M
3300010371\|Ga0134125_10172470	All Organisms → cellular organisms → Bacteria	2410	Open in IMG/M
3300010371\|Ga0134125_11174053	Not Available	839	Open in IMG/M
3300010371\|Ga0134125_12801684	Not Available	530	Open in IMG/M
3300010373\|Ga0134128_12541896	Not Available	564	Open in IMG/M
3300010376\|Ga0126381_100115098	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCGC AG-212-P17	3467	Open in IMG/M
3300010397\|Ga0134124_11794227	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCGC AG-212-P17	647	Open in IMG/M
3300010398\|Ga0126383_11355304	Not Available	801	Open in IMG/M
3300010399\|Ga0134127_10470973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Shinella → Shinella daejeonensis	1261	Open in IMG/M
3300010399\|Ga0134127_11110785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae	855	Open in IMG/M
3300011269\|Ga0137392_10336863	Not Available	1249	Open in IMG/M
3300012189\|Ga0137388_11469387	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	619	Open in IMG/M
3300012202\|Ga0137363_10808893	Not Available	795	Open in IMG/M
3300012931\|Ga0153915_10326000	Not Available	1721	Open in IMG/M
3300012948\|Ga0126375_11613093	Not Available	559	Open in IMG/M
3300012955\|Ga0164298_10699195	Not Available	711	Open in IMG/M
3300012960\|Ga0164301_11000708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Shinella → Shinella daejeonensis	657	Open in IMG/M
3300012960\|Ga0164301_11124061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Shinella → Shinella daejeonensis	626	Open in IMG/M
3300012985\|Ga0164308_11306167	Not Available	659	Open in IMG/M
3300012987\|Ga0164307_10315634	Not Available	1120	Open in IMG/M
3300012988\|Ga0164306_10000263	All Organisms → cellular organisms → Bacteria	20140	Open in IMG/M
3300012988\|Ga0164306_10001867	All Organisms → cellular organisms → Bacteria	9490	Open in IMG/M
3300012989\|Ga0164305_11003343	Not Available	710	Open in IMG/M
3300015245\|Ga0137409_10833882	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	757	Open in IMG/M
3300019789\|Ga0137408_1011182	All Organisms → cellular organisms → Bacteria	5379	Open in IMG/M
3300019789\|Ga0137408_1419434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Stenotrophomonas → unclassified Stenotrophomonas → Stenotrophomonas sp. BIGb0135	798	Open in IMG/M
3300020579\|Ga0210407_10167024	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1701	Open in IMG/M
3300021170\|Ga0210400_10052225	All Organisms → cellular organisms → Bacteria → Acidobacteria	3184	Open in IMG/M
3300021403\|Ga0210397_10000014	All Organisms → cellular organisms → Bacteria	223822	Open in IMG/M
3300021404\|Ga0210389_10297807	All Organisms → cellular organisms → Bacteria → Proteobacteria	1264	Open in IMG/M
3300021475\|Ga0210392_10561446	Not Available	845	Open in IMG/M
3300021560\|Ga0126371_13684627	Not Available	517	Open in IMG/M
3300024347\|Ga0179591_1108114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Leptolyngbya → unclassified Leptolyngbya → Leptolyngbya sp. SIOISBB	2082	Open in IMG/M
3300025898\|Ga0207692_10185779	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Leptolyngbya → unclassified Leptolyngbya → Leptolyngbya sp. SIOISBB	1214	Open in IMG/M
3300025898\|Ga0207692_10460825	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Gemmata → unclassified Gemmata → Gemmata sp. JC717	802	Open in IMG/M
3300025898\|Ga0207692_10729185	All Organisms → cellular organisms → Bacteria → Terrabacteria group	645	Open in IMG/M
3300025905\|Ga0207685_10231360	All Organisms → cellular organisms → Bacteria → Terrabacteria group	884	Open in IMG/M
3300025905\|Ga0207685_10637003	Not Available	575	Open in IMG/M
3300025906\|Ga0207699_10382088	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	1000	Open in IMG/M
3300025906\|Ga0207699_10528508	Not Available	854	Open in IMG/M
3300025911\|Ga0207654_11336754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae → Aurantimonas → Aurantimonas coralicida	522	Open in IMG/M
3300025913\|Ga0207695_10342662	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCGC AG-212-P17	1382	Open in IMG/M
3300025916\|Ga0207663_10221249	Not Available	1377	Open in IMG/M
3300025924\|Ga0207694_10198795	All Organisms → cellular organisms → Bacteria → Proteobacteria	1630	Open in IMG/M
3300025928\|Ga0207700_11332518	Not Available	639	Open in IMG/M
3300025944\|Ga0207661_10049045	All Organisms → cellular organisms → Bacteria → Proteobacteria	3359	Open in IMG/M
3300026041\|Ga0207639_10359599	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1302	Open in IMG/M
3300026078\|Ga0207702_10279825	All Organisms → cellular organisms → Bacteria → Acidobacteria	1577	Open in IMG/M
3300026319\|Ga0209647_1014981	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5018	Open in IMG/M
3300026319\|Ga0209647_1213352	Not Available	659	Open in IMG/M
3300026527\|Ga0209059_1004260	All Organisms → cellular organisms → Bacteria	6434	Open in IMG/M
3300026527\|Ga0209059_1285431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Shinella → Shinella daejeonensis	557	Open in IMG/M
3300026557\|Ga0179587_10182857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium	1321	Open in IMG/M
3300027842\|Ga0209580_10009640	All Organisms → cellular organisms → Bacteria	4143	Open in IMG/M
3300027842\|Ga0209580_10104874	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1369	Open in IMG/M
3300027842\|Ga0209580_10106965	Not Available	1357	Open in IMG/M
3300027842\|Ga0209580_10240250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Leptolyngbya → unclassified Leptolyngbya → Leptolyngbya sp. SIOISBB	900	Open in IMG/M
3300027857\|Ga0209166_10083365	All Organisms → cellular organisms → Bacteria	1803	Open in IMG/M
3300027857\|Ga0209166_10237119	Not Available	972	Open in IMG/M
3300027895\|Ga0209624_10659880	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300027910\|Ga0209583_10104908	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCGC AG-212-P17	1095	Open in IMG/M
3300031057\|Ga0170834_109363814	Not Available	674	Open in IMG/M
3300031249\|Ga0265339_10198874	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	990	Open in IMG/M
3300031446\|Ga0170820_12503287	Not Available	747	Open in IMG/M
3300031474\|Ga0170818_102192690	Not Available	747	Open in IMG/M
3300031938\|Ga0308175_100267374	Not Available	1726	Open in IMG/M
3300033412\|Ga0310810_11158285	Not Available	634	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.67%
Host-Associated	Host-Associated	15.33%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.48%
Plants	Host-Associated → Plants	15.33%
Aquatic	Environmental → Aquatic	2.19%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.48%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.22%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.11%
Sediment	Environmental → Aquatic → Sediment	1.46%
Freshwater	Environmental → Aquatic → Freshwater	0.73%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.20%
Loam	Environmental → Terrestrial → Soil → Loam	26.28%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.49%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.11%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.46%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.73%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.73%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	21.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.49%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.76%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.11%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.65%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.19%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.46%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.46%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.73%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.73%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	16.79%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	10.95%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.57%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.84%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	5.84%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	5.11%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	5.11%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.65%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.92%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.19%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.46%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.46%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.46%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.46%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.73%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.73%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.73%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026527	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031249	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG	Host-Associated	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F62_01044010	2170459010	Grass Soil	PFPLFPIFATAANLLVLLGIYRKMSIIVYQHKLMWSDFAERKGISANGKHAAAGDSL
C688J35102_1207112023	3300002568	Soil	MQIHFIDFVTAANLLVLLGIYRKMSIIAYQHKLMWIDFAERKGISANGKHAASV*
JGI25614J43888_101543921	3300002906	Grasslands Soil	MQLHFADIFTAANLLVLLGIYRKMSIIVYQHKLMWTDFAGRKGIAANGKSAEV*
soilH1_102956793	3300003321	Sugarcane Root And Bulk Soil	MQIHFIDFVTAANLLVLLGIYRKMSIMLYQHKLMWVDFAERKGISANGKHAASV*
Ga0063455_1010875912	3300004153	Soil	MQIHFIDFVTAANLLVLLGIYRKMSIIVYQHKLMWTDFAERKGISANGKHAASV*
Ga0066690_108293421	3300005177	Soil	MQIHFTDFVTAANLLVLLGIYRKLSIIVYQHKLMWTDFADRKGISANGKHAASV*
Ga0066688_102978191	3300005178	Soil	MPFHFSDFATAANLLVLLGIYRKMSIIVYQHKLMWSDFAERKGISANGKHAANV*
Ga0070683_1000402486	3300005329	Corn Rhizosphere	MQIHFTDLATAANLLVLLGIYRKMSIIVYQHKLMWTDFAERKGISANGKHVASA*
Ga0070683_1002685772	3300005329	Corn Rhizosphere	MQIHFTDLVTAANLLVLLGIYRKLSIIVYQHKLMWTDFADRKGISANGKHAPSV*
Ga0066388_1032705342	3300005332	Tropical Forest Soil	MEIRFADFISVGNLFVLLGIYYKMSVMLYQHKLMWKDFAQRKGINGEVNGTH*
Ga0070709_103052092	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MPFHFSDFATAANLLVLLGIYRKMSIIVYQHKLMWNDFAERKGISANGKHAPADNPL*
Ga0070709_104150372	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MQIHFTDFVTAANLLVLLGIYRKLSIIVYQHKLMWTDFADRKGISANGKHVASV*
Ga0070709_112582962	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MQIHFTDFVTAANLLVLLGIYRKLSIIVYQHKLMWTDFADRKGISAN
Ga0070714_1018471802	3300005435	Agricultural Soil	MQLHFSDIFTAANLLVLLGIYRRMSIMVYQHKLMWTDFADRKRIAPNGRQ*
Ga0070714_1022488932	3300005435	Agricultural Soil	MPFHFSDFATAANLLVLLGIYRKMSIIVYQHKLMWSDFAERKGISANGKHAENV*
Ga0070713_1005666811	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MPFHFSDFATAANLLVLLGIYRKMSIIVYQHKLMWNDFAERKGISANGKHA
Ga0070710_110681982	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MQFHFADIVTAANLFVLLGIYRKMSIIVYQHKLMWTDFAERKGISANGKHVASL*
Ga0070711_1001801233	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MPFHFSDFATAANLLVLLGIYRKMSIIVYQHKLMWSDFAERKGISANGKHAATL*
Ga0070711_1011729221	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MPFHFSDFATAANLLVLLGIYRKMSIIVYQHKLMWNDFAERKGISA
Ga0073909_101165433	3300005526	Surface Soil	MQFHFSDVVTAANLFVLLGIYRKMSIIVYQHKLMWTDFADRKGISANGKHLA*
Ga0070684_1007974512	3300005535	Corn Rhizosphere	MQIHFTDVATAANLLVLLGIYRKMSIIVYQHKLMWTDFAERKGISANGKHVASA*
Ga0070730_100251645	3300005537	Surface Soil	MPFHFSDFATAANLLVLLGIYRKMSIIVYQHKLMWSDFAERKGISANGKHAAADNPL*
Ga0070730_100510542	3300005537	Surface Soil	MQLHFSDIFTAANLLVLLGIYRRMSILVYQHKLMWTDFAGRKGIAPNGKELA*
Ga0070730_102016412	3300005537	Surface Soil	MQFHFSDLFTAANLFVLLGIYRRMSIMVYQHKLMWTDFADRKGIAPNGKDLA*
Ga0070730_104201291	3300005537	Surface Soil	MQIHFTDFVTAANLLVLLGIYRKLSIIVYQHKLMWTDFAERKGISAN
Ga0068853_1002047552	3300005539	Corn Rhizosphere	MQIHFTDFATAANLLVLLGIYRKMSIIVYQHKLMWTDFAERKGISANGKHAASV*
Ga0070732_100185503	3300005542	Surface Soil	MQMHFSDFVTAANLVVLLGIYRKMSIIVYQHKLMWTDFAERKGISANGKHAASV*
Ga0070732_100590092	3300005542	Surface Soil	MQMHFSDFVTAANLVVLLGIYRKMSIIVYQHKLMWADFAERKGISANGKHAASV*
Ga0070732_104726121	3300005542	Surface Soil	RKPMQMHFSDFVTAANLLVLLGIYRKLSIIVYQHKLMWTDFAERKGISANGKHAASV*
Ga0070732_106018952	3300005542	Surface Soil	MPFHFSDFATAANLLVLLGIYRKMSIIVYQHKLMWSDFAERKGISANGKSL*
Ga0066702_102528092	3300005575	Soil	MQLHFSDIFTAANLFVLLGIYRKMSIIVYQHKLMWTDFADRKGIAANGKQ*
Ga0066702_105473353	3300005575	Soil	MQIHFTDFVTAANLLVLLGIYRKLSIIVYQHKLMWTDFADRKGISPNGKHAASV*
Ga0066702_108946012	3300005575	Soil	MPLHFSDVFTAANLLVLLGIYRKMSIMVYQHKLMWSEFADRKGISTNGKHAAS*
Ga0068854_1012330082	3300005578	Corn Rhizosphere	MQIHFTDFATVANLLVLLGIYRKMSIIVYQHKLMWTDFAERKGISANGKHAASV*
Ga0068856_1013537982	3300005614	Corn Rhizosphere	ETMQIHFIDFITAANLLVLLGIYRKMSIIVYQHKLMWTDFAERKGISANGKHAASV*
Ga0068852_1001292332	3300005616	Corn Rhizosphere	MQIHFTDFATAANLLVLLGIYRKMSIIVYQHKLMWTDFAERKGISASGKHAASV*
Ga0066903_1000406838	3300005764	Tropical Forest Soil	FHFSDVFTAANLLVLLGIYRKMSIIVYQHKLMWTDFAERKGLSAHGKAAG*
Ga0066903_1029750242	3300005764	Tropical Forest Soil	MQFHFSDLVTAANLFVLLGIYRKLSIIVYQHKLMWSDFAERKGISGNGKAAESH*
Ga0066903_1059515661	3300005764	Tropical Forest Soil	SKGVNMQFHFSDVFTAANLLVLLGIYRKMSIIVYQHKLMWTDFAERKGLSAHGKSTA*
Ga0068851_101144873	3300005834	Corn Rhizosphere	MQIHFTDFATVANLLVLLGIYRKMSIIVYQHKLMWTDFAERKGISANGKHVASA*
Ga0070717_100572941	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MPFHFSDFATAANLLVLLGIYRKMSIIVYQHKLMWSDFAERKGISANGKHAADNPL*
Ga0070717_101832204	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MQIHFTDCVTAANLLVLLGIYRKMSIIVYQHKLMWTDFAERKGISANGKHAASV*
Ga0075023_1000069772	3300006041	Watersheds	MQFHFSDIVTAANLFVLLGIYRKMSIIVYQHKLMWTDFADRKGISANGKHVASH*
Ga0070715_101046821	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MPFHFSDFATAANLLVLLGIYRKLSIIVYQHKLMWSDFAERKGISA
Ga0070715_104503522	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MPFHFSDFATAANLLVLLGIYRKMSIIVYQHKLMWSDFAERKGISANGKHAAGV*
Ga0070715_108993971	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MQIHFTDFVTAANLLVLLGIYRKMSIIVYQHKLMWTDFAERKGISANGKHAAS
Ga0070716_1010480171	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MPLHFSDIFTAANLLVLLGIYRRMSIMVYQHKLMWTDFADRKGLAPMPGSRRER
Ga0070712_1002910802	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MPFHFSDFATAANLLVLLGIYRKMSIIVYQHKLMWNDFAERKGISANGKHAAADNPL*
Ga0066660_103206603	3300006800	Soil	MPLHFSDIFTAANLFVLLGIYRKMSIIVYQHKLMWTDFADRKGIAANGKQ*
Ga0079220_115268701	3300006806	Agricultural Soil	MPFHFSDFATAANLLVLLGIYRKMSIIVYQHKLMWNDFAERKGISANGKHAPAGNPL*
Ga0075425_1006242811	3300006854	Populus Rhizosphere	DPMQFHFSDLVTAANLFVLLGIYRKLSIIVYQHKLMWSDFADRKGISGNGKAAASH*
Ga0075434_1000315664	3300006871	Populus Rhizosphere	MQFHFSDLVTAANLFVLLGIYRKLSIIVYQHKLMWSDFADRKGISGNGKAAASH*
Ga0075436_1006028432	3300006914	Populus Rhizosphere	MPFHFSDFATVANLLVLLGIYRKMSIIVYQHKLMWSDFAERKGISANGKHAVGDNPL*
Ga0075436_1015278731	3300006914	Populus Rhizosphere	GDPMQFHFSDLVTAANLFVLLGIYRKLSIIVYQHKLMWSDFADRKGISGNGKAAASH*
Ga0079219_117549562	3300006954	Agricultural Soil	MPFHFSDFATAANLLVLLGIYRKMSIIVYQHKLMWSDFAERKGISANGKHTAGV*
Ga0099795_105095271	3300007788	Vadose Zone Soil	MQIHFTDFVTAANLLVLLGIYRKMSIIVYQHKLMWTDFAERKGISANGKHAASA*
Ga0105240_104737193	3300009093	Corn Rhizosphere	MQIHFTDFVTAANLLVLLGIYRKMSIIVYQHKLMWNDFAERKGISANGKHAPAGNPL*
Ga0105240_105390312	3300009093	Corn Rhizosphere	MQIHFTDFVTAANLLVLLGIYRKMSIIVYQHKLMWTDFAERKGISANGKHAASV*
Ga0105245_126296642	3300009098	Miscanthus Rhizosphere	LSIYQGDSFYLCALFFQERELMQIHFTDFVTAANLLVLLGIYRKMSIIVYQHKLMWTDFAERKGISANGKHAASV*
Ga0105241_110400141	3300009174	Corn Rhizosphere	LEQIAFLQTILLEREPMQIHFTDFATVANLLVLLGIYRKMSIIVYQHKLMWTDFAERKGISANGKHVASV*
Ga0105237_114479152	3300009545	Corn Rhizosphere	VTAANLLVLLGIYRKLSIIVYQHKLMWTDFADRKGISANGKHAASV*
Ga0105238_112380231	3300009551	Corn Rhizosphere	QTILLEREPMQIHFTDVATAANLLVLLGIYRKMSIIVYQHKLMWTDFAERKGISANGKHAASV*
Ga0126380_113161801	3300010043	Tropical Forest Soil	MEIRFADLISVGNLFVLLGIYYKMSVMLYQHKLMWKDFAQRKGIGEVNGGTS*
Ga0126384_120830551	3300010046	Tropical Forest Soil	MEIRFADFISVGNLFVLLGIYYKMSVMLYQHKLMWKDFAQRKGIGEVNGGTS*
Ga0126370_102238253	3300010358	Tropical Forest Soil	MPFHFSDFATAANLLVLLGIYRKMSIIVYQHKLMWSDFAERKGISANGKHSAASSPL*
Ga0126370_105193642	3300010358	Tropical Forest Soil	MQLHFSDIFTAANLFVLLGIYRRMSLIVYQHKLMWTDFADRKGIAPN
Ga0126370_113637462	3300010358	Tropical Forest Soil	MQFHFSDVFTAANLLVLLGIYRKMSIIVYQHKLMWTDFAERKGLSAHGKAAG*
Ga0126376_100228302	3300010359	Tropical Forest Soil	MQLHFSDIFTAANLFVLLGIYRRMSIIVYQHKLMWTDFADRKGIAPNGKHLA*
Ga0126376_131022101	3300010359	Tropical Forest Soil	HHYHIFQEDPMPFHFSDFATAANLFVLLGIYRKMSIIVYQHKLMWSDFAERKGISANGKHAAGV*
Ga0126372_102201902	3300010360	Tropical Forest Soil	MQLHFSDIFTAANLFVLLGIYRRMSIIVYQHKLMWTDFADRKGIAPNGKRLA*
Ga0134125_101724702	3300010371	Terrestrial Soil	MQLHFSDIFTAANLLVLLGIYRKMSVIVYQHKLMWTDFADRKGISANGKHLA*
Ga0134125_111740531	3300010371	Terrestrial Soil	MNHFPKREFMQIHFIDFVTAANLLVLLGIYRKLSIIVYQHKLMWTDFADRKGISANGKHAASV*
Ga0134125_128016841	3300010371	Terrestrial Soil	LEQIAFLQTILLEREPMQIHFTDFATAANLLVLLGIYRKMSIIVYQHKLMWTDFAERKGISANGKHAASV*
Ga0134128_125418962	3300010373	Terrestrial Soil	MCAISGEETMQIHFTDFITAANLLVLLGIYRKMSIIVYQHKLMWTDFAERKGISANGKHAASV*
Ga0126381_1001150982	3300010376	Tropical Forest Soil	MPFHFSDFATAANLLVLLGIYRKMSIIVYQHKLMWSDFAERKGISANGKHSAVDSPL*
Ga0134124_117942271	3300010397	Terrestrial Soil	MQIHFTDFVTAANLLVLLGICRKMSIIVYQHKLMWTDFAERKGI
Ga0126383_113553042	3300010398	Tropical Forest Soil	MPFHFSDFATAANLIVLLGIYRKMSVIVYQHKLMWSDFAERKGISANGKHAAGV*
Ga0134127_104709732	3300010399	Terrestrial Soil	LEQITFLQTILLEREPMQIHFTDFATAANLLVLLGIYRKMSIIVYQHKLMWTDFAERKGISANGKHAASV*
Ga0134127_111107852	3300010399	Terrestrial Soil	MQIHFSDFVTAANLLVLLGIYRKLSIIVYQHKLMWTDFAERKGISANGKHAASV*
Ga0137392_103368632	3300011269	Vadose Zone Soil	MQIHFTDFVTAANLLVLLGIYRKMSIIVYQHKLMWTDFAERKGISANGKSVEA*
Ga0137388_114693872	3300012189	Vadose Zone Soil	MQFHLSDVFTAANLLVLLALYRKVNIVFYQHKLMWADFAERKGISARANGKAASAG*
Ga0137363_108088932	3300012202	Vadose Zone Soil	MQIHFTDFVTAANLLVLLGIYRKMSIIVYQHKLMWTDFAERKGISANGKHAANV*
Ga0153915_103260002	3300012931	Freshwater Wetlands	MPFHFSDFATAANLLVLLGIYRKMSIIVYQHKLMWSDFAERKGISANGKHAAAGDSL*
Ga0126375_116130931	3300012948	Tropical Forest Soil	FHFSDLVTAANLFVLLGIYRKLSIIVYQHKLMWTDFADRKGISANGKAAESH*
Ga0164298_106991951	3300012955	Soil	PPKIFQEDPMPFHFSDFATAANLLVLLGIYRKMSIIVYQHKLMWNDFAERKGISANGKHAGGV*
Ga0164301_110007081	3300012960	Soil	MQIHFTDFVTAANLLVLLGIYRKLSIIVYQHKLMWTDFADRKGISANGKHAAIV*
Ga0164301_111240612	3300012960	Soil	MQIHFTDFVTAANLLVLLGICRKMSIIVYQHKLMWTDFAERKGISANGKHVASV*
Ga0164308_113061672	3300012985	Soil	MPFHFSDFATAANLLVLLGIYRKMSIIVYQHKLMWSDFAERKGISANGKHAAADNSL*
Ga0164307_103156342	3300012987	Soil	MQLHFSDVFTAANLFVLLGIYRKMSIIVYQHKLMWTEFADRKGISANGKHATS*
Ga0164306_1000026313	3300012988	Soil	MPFHFSDFATAANLLVLLGIYRKMSIIVYQHKLMWNDFAERKGISANGKHAPASNPL*
Ga0164306_1000186714	3300012988	Soil	MNFHFSDIITAANFLVLCGILRKLSIFTYQHKLMWSDFAQRKGIDGNGKAKSAGMGL*
Ga0164305_110033431	3300012989	Soil	MQIHFTDFITAANLVVLLGIYRKMSIIVYQHKLMWADFAERKGISANGKHAASV*
Ga0137409_108338822	3300015245	Vadose Zone Soil	MQIHFADVATAANLLVLLGIYRKMSIIVYQHKLMWTDFAERKGISANGKHVASV*
Ga0137408_10111822	3300019789	Vadose Zone Soil	MQIHFTDFVTAANLLVLLGIYRKMSIIVYQHKLMWTDFAERKGISANGKHAASV
Ga0137408_14194342	3300019789	Vadose Zone Soil	IHFTDFVTAANLLVLLGIYRKMSIIVYQHKLMWTDFAERKGISANGKHAASV
Ga0210407_101670242	3300020579	Soil	MPFHWTDIVTAANLLVLLGIYRKISIVVYQHKLMWEDFAKRKDISIGANGKPIGAG
Ga0210400_100522253	3300021170	Soil	MQLHLSDLFTAANLLVLLALYRKVNIVFYQHKLMWADFAERKGISAQANGKPAGAD
Ga0210397_10000014162	3300021403	Soil	MQFHFSDVVTAANLLVLLGIYRKLSIIVYQHKLMWLDFTDRKGIRANGKHVESV
Ga0210389_102978072	3300021404	Soil	MQFHFGDFITAANLFVLLGIYRKMSIVVYQHKLMWADFAERKGISPNGKHAASV
Ga0210392_105614461	3300021475	Soil	MQFHFADIVTAANLFVLLGIYRKMSIVVYQHKLMWTDFADRKNISANGKHVTSL
Ga0126371_136846271	3300021560	Tropical Forest Soil	MQLHFSDIFTAANLFVLLGIYRRMSIMVYQHKLMWTDFADRKGISANNKAG
Ga0179591_11081143	3300024347	Vadose Zone Soil	MQIHFTDFVTAANLLVLLGIYRKMSIIVYQHKLMWTDFAERKGISANGKDAASV
Ga0207692_101857793	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	VTAANLLVLLGIYRKLSIIVYQHKLMWTDFADRKGISANGKHVASV
Ga0207692_104608252	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	FATAANLLVLLGIYRKMSIIVYQHKLMWSDFAERKGISANGKHAATL
Ga0207692_107291851	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MQFHFADIVTAANLFVLLGIYRKMSIIVYQHKLMWTDFAERKGISANGKHVASL
Ga0207685_102313602	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MPFHFSDFATAANLLVLLGIYRKMSIIVYQHKLMWSDFAERKGISANGKHAAAGNPL
Ga0207685_106370031	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MQIHFTDFVTAANLLVLLGIYRKLSIIVYQHKLMWTDFAERKGISANGKHAASV
Ga0207699_103820882	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MPLHFSDIFTAANLLVLLGIYRRMSIMVYQHKLMWTDFADRKGLAPMPGSRRERA
Ga0207699_105285081	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MPLHFSDFATAANLLVLLGIYRKMSIIVYQHKLMWSDFAERKGISANGKSAVGVG
Ga0207654_113367541	3300025911	Corn Rhizosphere	MQIHFTDLVTAANLLVLLGIYRKLSIIVYQHKLMWTDFADRKGISANGKHAPSV
Ga0207695_103426623	3300025913	Corn Rhizosphere	MQIHFTDFVTAANLLVLLGIYRKLSIIVYQHKLMWTDFADRKGIS
Ga0207663_102212491	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MPFHFSDFATAANLLVLLGIYRKMSIIVYQHKLMWSDFAERKGISANGKHSAA
Ga0207694_101987951	3300025924	Corn Rhizosphere	FWRGEPMQIHFTDVATAANLLVLLGIYRKMSIIVYQHKLMWTDFAERKGISANGKHAASV
Ga0207700_113325181	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MPFHFSDFATAANLLVLLGIYRKMSIIVYQHKLMWSDFAERKGISANGKSAVG
Ga0207661_100490453	3300025944	Corn Rhizosphere	MQIHFTDVATAANLLVLLGIYRKMSIIVYQHKLMWTDFAERKGISANGKHVASA
Ga0207639_103595993	3300026041	Corn Rhizosphere	MQIHFTDFATAANLLVLLGIYRKMSIIVYQHKLMWTDFAERKGISANGKHAASV
Ga0207702_102798253	3300026078	Corn Rhizosphere	MQIHFSDFITAANLLVLLGIYRKMSIIVYQHKLMWTDFAERKGISANGKHAASV
Ga0209647_10149815	3300026319	Grasslands Soil	MQLHFADIFTAANLLVLLGIYRKMSIIVYQHKLMWTDFAGRKGIAANGKSAEV
Ga0209647_12133522	3300026319	Grasslands Soil	MQIHFTDFVTAANLLVLLGIYRKMSIIVYQHKLMWTDFAERKGISANGKHAASA
Ga0209059_10042602	3300026527	Soil	MQLHFSDIFTAANLFVLLGIYRKMSIIVYQHKLMWTDFADRKGIAANGKQ
Ga0209059_12854311	3300026527	Soil	SMQIHFTDFVTAANLLVLLGIYRKLSIIVYQHKLMWTDFADRKGISANGKHAASV
Ga0179587_101828573	3300026557	Vadose Zone Soil	MQIHFTEFVTAANLLVLLGIYRKMSIIVYQHKLMWTDFAERKGISANGKHAASV
Ga0209580_100096401	3300027842	Surface Soil	HFSDFVTAANLVVLLGIYRKMSIIVYQHKLMWADFAERKGISANGKHAASV
Ga0209580_101048743	3300027842	Surface Soil	MPFHFSDFATAANLLVLLGIYRKMSIIVYQHKLMWSDFAERKGISPNGKHAVGVG
Ga0209580_101069653	3300027842	Surface Soil	MQMHFSDFVTAANLVVLLGIYRKMSIIVYQHKLMWTDFAERKGISANGKHAASV
Ga0209580_102402501	3300027842	Surface Soil	MQMHFSDFVTAANLLVLLGIYRKLSIIVYQHKLMWTDFAERKGISANGKHAASV
Ga0209166_100833651	3300027857	Surface Soil	MQFHFSDLFTAANLFVLLGIYRRMSIMVYQHKLMWTDFADRKGIAPNGKDLA
Ga0209166_102371192	3300027857	Surface Soil	MQLHFSDIFTAANLLVLLGIYRRMSILVYQHKLMWTDFAGRKGIAPNGKELA
Ga0209624_106598802	3300027895	Forest Soil	MQFHFGDFITAANLLVLLGIYRKMSIVVYQHKLMWADFAERKGISPNGKHAASV
Ga0209583_101049082	3300027910	Watersheds	MQFHFSDIVTAANLFVLLGIYRKMSIIVYQHKLMWTDFADRKGISANGKHVASH
Ga0170834_1093638141	3300031057	Forest Soil	MQIHFTDFVTAANLLVLLGIYRKMSIIVYQHKLMWTDFAERKGISTNGKHAASV
Ga0170824_1152658392	3300031231	Forest Soil	AANLLVLLGIYRKMSIIVYQHKLMWTDFAERKGISANGKHVASV
Ga0265339_101988742	3300031249	Rhizosphere	MQFHFGDLITAANLFVLLGIYRKMSIVVYQHKLMWADFAERKGISPNGKHAASA
Ga0170820_125032872	3300031446	Forest Soil	MQIHSTDFVTAANLLVLLGIYRKMSIIVYQHKLMWTDFAERKGISANGKHVASV
Ga0170818_1021926902	3300031474	Forest Soil	MQIHFTDFVTAANLLVLLGIYRKMSIIVYQHKLMWTDFAERKGISANGKHVASV
Ga0308175_1002673743	3300031938	Soil	MQIHFTDLVTAANLLVLLGIYRKLSIIVYQHKLMWTDFADRKGISANGKHAAGV
Ga0310810_111582852	3300033412	Soil	MPFHFSDFATAANLLVLLGIYRKMSIIVYQHKLMWNDFAERKGISANGKHAGGV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F056943

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences