Metagenome / Metatranscriptome Family F057185

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F057185
Family Type	Metagenome / Metatranscriptome
Number of Sequences	136
Average Sequence Length	81 residues
Representative Sequence	MNFPKTSRLTALLGTASLLTMAQAEGVYAGEVVAQAEEIPETVLITGSLIRGTTAVGVPVIGLSPQDFAMTG
Number of Associated Samples	93
Number of Associated Scaffolds	136

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	93.18 %
% of genes near scaffold ends (potentially truncated)	96.32 %
% of genes from short scaffolds (< 2000 bps)	89.71 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (68.382 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (19.118 % of family members)
Environment Ontology (ENVO)	Unclassified (36.029 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (40.441 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 35.00% β-sheet: 0.00% Coil/Unstructured: 65.00%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.27
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.27
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 136 Family Scaffolds
PF00245	Alk_phosphatase	1.47
PF00753	Lactamase_B	1.47
PF01161	PBP	0.74
PF13545	HTH_Crp_2	0.74
PF00596	Aldolase_II	0.74
PF00120	Gln-synt_C	0.74
PF12697	Abhydrolase_6	0.74
PF07969	Amidohydro_3	0.74
PF14903	WG_beta_rep	0.74
PF00593	TonB_dep_Rec	0.74
PF07478	Dala_Dala_lig_C	0.74
PF03949	Malic_M	0.74
PF02775	TPP_enzyme_C	0.74
PF00924	MS_channel	0.74
PF06707	DUF1194	0.74

COG ID	Name	Functional Category	% Frequency in 136 Family Scaffolds
COG1785	Alkaline phosphatase	Inorganic ion transport and metabolism [P]	1.47
COG0281	Malic enzyme	Energy production and conversion [C]	0.74
COG0668	Small-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	0.74
COG0686	Alanine dehydrogenase (includes sporulation protein SpoVN)	Amino acid transport and metabolism [E]	0.74
COG1881	Uncharacterized conserved protein, phosphatidylethanolamine-binding protein (PEBP) family	General function prediction only [R]	0.74
COG3264	Small-conductance mechanosensitive channel MscK	Cell wall/membrane/envelope biogenesis [M]	0.74

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.38 %
All Organisms	root	All Organisms	31.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.38 %
cellular organisms	root	All Organisms → cellular organisms	31.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.38 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	31.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.38 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	22.79 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.21 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.38 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	16.91 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.21 %
uncultured bacterium BLR3	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium BLR3	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.38 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	8.82 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3.68 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.21 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.74 %
uncultured bacterium BLR3	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium BLR3	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.38 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	8.82 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	3.68 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	2.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.21 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.74 %
uncultured bacterium BLR3	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium BLR3	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.38 %
Novosphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium	5.88 %
Nitrospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Nitrospirillum	2.94 %
Massilia group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group	2.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.21 %
Citromicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Citromicrobium	0.74 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.74 %
Sphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	0.74 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.74 %
uncultured bacterium BLR3	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium BLR3	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.38 %
unclassified Novosphingobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium	5.88 %
Massilia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia	2.94 %
Nitrospirillum amazonense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Nitrospirillum → Nitrospirillum amazonense	2.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.21 %
unclassified Azospirillum	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum	0.74 %
unclassified Citromicrobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Citromicrobium → unclassified Citromicrobium	0.74 %
unclassified Sphingobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → unclassified Sphingobium	0.74 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.74 %
uncultured bacterium BLR3	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium BLR3	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.38 %
Novosphingobium sp. PP1Y	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium → Novosphingobium sp. PP1Y	5.88 %
Massilia niastensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia → Massilia niastensis	2.94 %
Nitrospirillum amazonense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Nitrospirillum → Nitrospirillum amazonense	2.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.21 %
Sphingobium sp. AP50	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → unclassified Sphingobium → Sphingobium sp. AP50	0.74 %
Citromicrobium sp. JLT1363	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Citromicrobium → unclassified Citromicrobium → Citromicrobium sp. JLT1363	0.74 %
Azospirillum sp. B4	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum → Azospirillum sp. B4	0.74 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.74 %
uncultured bacterium BLR3	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium BLR3	0.74 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000363\|ICChiseqgaiiFebDRAFT_10997189	Not Available	863	Open in IMG/M
3300000550\|F24TB_15414010	Not Available	604	Open in IMG/M
3300002907\|JGI25613J43889_10219202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium → Novosphingobium sp. PP1Y	513	Open in IMG/M
3300003319\|soilL2_10062371	Not Available	1922	Open in IMG/M
3300004052\|Ga0055490_10195467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum → Azospirillum sp. B4	610	Open in IMG/M
3300004114\|Ga0062593_101134783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium → Novosphingobium sp. PP1Y	814	Open in IMG/M
3300004145\|Ga0055489_10053067	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1090	Open in IMG/M
3300004282\|Ga0066599_101538323	Not Available	512	Open in IMG/M
3300004463\|Ga0063356_100584466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1504	Open in IMG/M
3300004463\|Ga0063356_101668282	Not Available	952	Open in IMG/M
3300004463\|Ga0063356_102101695	Not Available	857	Open in IMG/M
3300004463\|Ga0063356_104905840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium → Novosphingobium sp. PP1Y	575	Open in IMG/M
3300004463\|Ga0063356_105181989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium → Novosphingobium sp. PP1Y	560	Open in IMG/M
3300004778\|Ga0062383_10073591	All Organisms → cellular organisms → Bacteria	1405	Open in IMG/M
3300004779\|Ga0062380_10484646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Nitrospirillum → Nitrospirillum amazonense	547	Open in IMG/M
3300005093\|Ga0062594_101135248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium → Novosphingobium sp. PP1Y	767	Open in IMG/M
3300005332\|Ga0066388_105281642	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Nitrospirillum → Nitrospirillum amazonense	655	Open in IMG/M
3300005364\|Ga0070673_101451758	Not Available	646	Open in IMG/M
3300005406\|Ga0070703_10431699	Not Available	580	Open in IMG/M
3300005438\|Ga0070701_11156935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium → Novosphingobium sp. PP1Y	547	Open in IMG/M
3300005440\|Ga0070705_100981935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium → Novosphingobium sp. PP1Y	684	Open in IMG/M
3300005545\|Ga0070695_101460447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Citromicrobium → unclassified Citromicrobium → Citromicrobium sp. JLT1363	568	Open in IMG/M
3300005578\|Ga0068854_100826329	Not Available	809	Open in IMG/M
3300006844\|Ga0075428_101415244	Not Available	730	Open in IMG/M
3300006845\|Ga0075421_100132714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3121	Open in IMG/M
3300006846\|Ga0075430_100642938	Not Available	875	Open in IMG/M
3300006846\|Ga0075430_100663125	Not Available	860	Open in IMG/M
3300006846\|Ga0075430_101718398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Nitrospirillum → Nitrospirillum amazonense	515	Open in IMG/M
3300006847\|Ga0075431_101180122	Not Available	729	Open in IMG/M
3300006853\|Ga0075420_100068371	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3146	Open in IMG/M
3300006853\|Ga0075420_101863686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Nitrospirillum → Nitrospirillum amazonense	514	Open in IMG/M
3300006881\|Ga0068865_101907414	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium → Novosphingobium sp. PP1Y	538	Open in IMG/M
3300006894\|Ga0079215_10042040	All Organisms → cellular organisms → Bacteria → Acidobacteria	1718	Open in IMG/M
3300007004\|Ga0079218_13935140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia → Massilia niastensis	505	Open in IMG/M
3300009094\|Ga0111539_10462872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1477	Open in IMG/M
3300009094\|Ga0111539_12502641	Not Available	599	Open in IMG/M
3300009094\|Ga0111539_13018488	Not Available	544	Open in IMG/M
3300009100\|Ga0075418_11577028	Not Available	713	Open in IMG/M
3300009100\|Ga0075418_11703330	Not Available	685	Open in IMG/M
3300009100\|Ga0075418_12093528	Not Available	617	Open in IMG/M
3300009100\|Ga0075418_12531495	Not Available	560	Open in IMG/M
3300009147\|Ga0114129_12282969	Not Available	650	Open in IMG/M
3300009148\|Ga0105243_12635859	Not Available	543	Open in IMG/M
3300009156\|Ga0111538_10142617	Not Available	3043	Open in IMG/M
3300009156\|Ga0111538_10431515	All Organisms → cellular organisms → Bacteria	1669	Open in IMG/M
3300009156\|Ga0111538_10772156	Not Available	1217	Open in IMG/M
3300009176\|Ga0105242_13073287	Not Available	517	Open in IMG/M
3300009597\|Ga0105259_1080808	Not Available	754	Open in IMG/M
3300010046\|Ga0126384_12347093	Not Available	516	Open in IMG/M
3300010047\|Ga0126382_11022351	Not Available	726	Open in IMG/M
3300010047\|Ga0126382_11915970	Not Available	561	Open in IMG/M
3300010047\|Ga0126382_12471815	Not Available	506	Open in IMG/M
3300010398\|Ga0126383_13627125	Not Available	504	Open in IMG/M
3300010399\|Ga0134127_10216325	All Organisms → cellular organisms → Bacteria	1792	Open in IMG/M
3300010399\|Ga0134127_11294728	Not Available	798	Open in IMG/M
3300010399\|Ga0134127_12887679	Not Available	560	Open in IMG/M
3300011403\|Ga0137313_1021649	Not Available	1041	Open in IMG/M
3300011403\|Ga0137313_1102228	Not Available	520	Open in IMG/M
3300011412\|Ga0137424_1119077	Not Available	551	Open in IMG/M
3300011415\|Ga0137325_1056062	Not Available	846	Open in IMG/M
3300011417\|Ga0137326_1001471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7049	Open in IMG/M
3300011420\|Ga0137314_1021286	All Organisms → cellular organisms → Bacteria	1611	Open in IMG/M
3300011420\|Ga0137314_1075613	Not Available	820	Open in IMG/M
3300011425\|Ga0137441_1163638	Not Available	555	Open in IMG/M
3300011429\|Ga0137455_1219696	Not Available	564	Open in IMG/M
3300011435\|Ga0137426_1006928	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium BLR3	2565	Open in IMG/M
3300012039\|Ga0137421_1237405	Not Available	529	Open in IMG/M
3300012167\|Ga0137319_1056937	Not Available	785	Open in IMG/M
3300012167\|Ga0137319_1114538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → unclassified Sphingobium → Sphingobium sp. AP50	541	Open in IMG/M
3300012173\|Ga0137327_1056371	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	865	Open in IMG/M
3300012173\|Ga0137327_1152895	Not Available	503	Open in IMG/M
3300012175\|Ga0137321_1091125	Not Available	684	Open in IMG/M
3300012202\|Ga0137363_10370384	All Organisms → cellular organisms → Bacteria → Acidobacteria	1189	Open in IMG/M
3300012228\|Ga0137459_1091258	Not Available	882	Open in IMG/M
3300012231\|Ga0137465_1083962	All Organisms → cellular organisms → Bacteria	952	Open in IMG/M
3300012361\|Ga0137360_10039411	All Organisms → cellular organisms → Bacteria → Proteobacteria	3335	Open in IMG/M
3300012906\|Ga0157295_10388826	Not Available	517	Open in IMG/M
3300012948\|Ga0126375_10409214	Not Available	983	Open in IMG/M
3300014326\|Ga0157380_10081788	All Organisms → cellular organisms → Bacteria	2643	Open in IMG/M
3300014878\|Ga0180065_1118222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia → Massilia niastensis	609	Open in IMG/M
3300016294\|Ga0182041_11419785	Not Available	637	Open in IMG/M
3300018063\|Ga0184637_10670983	Not Available	572	Open in IMG/M
3300018063\|Ga0184637_10746450	Not Available	528	Open in IMG/M
3300018079\|Ga0184627_10271130	Not Available	892	Open in IMG/M
3300018084\|Ga0184629_10027588	Not Available	2426	Open in IMG/M
3300018084\|Ga0184629_10500204	Not Available	633	Open in IMG/M
3300018429\|Ga0190272_10841962	Not Available	851	Open in IMG/M
3300018429\|Ga0190272_11114997	Not Available	766	Open in IMG/M
3300018481\|Ga0190271_10281039	All Organisms → cellular organisms → Bacteria → Proteobacteria	1716	Open in IMG/M
3300019228\|Ga0180119_1144058	Not Available	595	Open in IMG/M
3300019229\|Ga0180116_1032811	Not Available	627	Open in IMG/M
3300019229\|Ga0180116_1033503	Not Available	507	Open in IMG/M
3300019238\|Ga0180112_1139184	Not Available	552	Open in IMG/M
3300019238\|Ga0180112_1277455	Not Available	568	Open in IMG/M
3300019248\|Ga0180117_1149445	Not Available	561	Open in IMG/M
3300019248\|Ga0180117_1421018	Not Available	568	Open in IMG/M
3300019257\|Ga0180115_1360596	Not Available	535	Open in IMG/M
3300019263\|Ga0184647_1382513	Not Available	508	Open in IMG/M
3300019377\|Ga0190264_10249981	Not Available	1028	Open in IMG/M
3300019377\|Ga0190264_11981412	Not Available	533	Open in IMG/M
3300019377\|Ga0190264_12300559	Not Available	506	Open in IMG/M
3300019377\|Ga0190264_12318263	Not Available	504	Open in IMG/M
3300020063\|Ga0180118_1226535	Not Available	609	Open in IMG/M
3300020066\|Ga0180108_1074730	Not Available	506	Open in IMG/M
3300020066\|Ga0180108_1129653	Not Available	547	Open in IMG/M
3300020067\|Ga0180109_1248491	Not Available	505	Open in IMG/M
3300021073\|Ga0210378_10133180	Not Available	963	Open in IMG/M
3300021081\|Ga0210379_10086018	Not Available	1294	Open in IMG/M
3300021081\|Ga0210379_10243233	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300025310\|Ga0209172_10210558	Not Available	1017	Open in IMG/M
3300025937\|Ga0207669_11369546	Not Available	602	Open in IMG/M
3300025960\|Ga0207651_11159132	Not Available	693	Open in IMG/M
3300025981\|Ga0207640_10627742	All Organisms → cellular organisms → Bacteria	913	Open in IMG/M
3300026075\|Ga0207708_11073074	Not Available	701	Open in IMG/M
3300027513\|Ga0208685_1037292	All Organisms → cellular organisms → Bacteria → Proteobacteria	1063	Open in IMG/M
3300027513\|Ga0208685_1093944	Not Available	645	Open in IMG/M
3300027513\|Ga0208685_1098648	Not Available	628	Open in IMG/M
3300027778\|Ga0209464_10106037	Not Available	965	Open in IMG/M
3300027840\|Ga0209683_10013783	All Organisms → cellular organisms → Bacteria → Proteobacteria	3276	Open in IMG/M
3300027843\|Ga0209798_10078358	All Organisms → cellular organisms → Bacteria → Acidobacteria	1698	Open in IMG/M
3300027907\|Ga0207428_10595188	Not Available	797	Open in IMG/M
3300027907\|Ga0207428_10795930	Not Available	672	Open in IMG/M
3300027909\|Ga0209382_10130559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	2924	Open in IMG/M
3300027909\|Ga0209382_11310272	Not Available	733	Open in IMG/M
3300027909\|Ga0209382_11926170	Not Available	570	Open in IMG/M
3300030553\|Ga0247645_1244172	Not Available	507	Open in IMG/M
3300031854\|Ga0310904_11070188	Not Available	577	Open in IMG/M
3300034115\|Ga0364945_0118091	Not Available	784	Open in IMG/M
3300034257\|Ga0370495_0255673	Not Available	573	Open in IMG/M
3300034643\|Ga0370545_108115	Not Available	612	Open in IMG/M
3300034643\|Ga0370545_126610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia → Massilia niastensis	576	Open in IMG/M
3300034664\|Ga0314786_138938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia → Massilia niastensis	559	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	69.85%
Host-Associated	Host-Associated	30.15%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	39.71%
Terrestrial	Environmental → Terrestrial	30.15%
Plants	Host-Associated → Plants	30.15%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	29.41%
Rhizosphere	Host-Associated → Plants → Rhizosphere	23.53%
Sediment	Environmental → Aquatic → Sediment	20.59%
Freshwater	Environmental → Aquatic → Freshwater	16.91%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.62%
Marine	Environmental → Aquatic → Marine	1.47%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.74%
Floodplain	Environmental → Terrestrial → Floodplain	0.74%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	23.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	21.32%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	20.59%
Sediment	Environmental → Aquatic → Freshwater → Sediment	12.50%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.62%
Loam	Environmental → Terrestrial → Soil → Loam	5.15%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.68%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.21%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.47%
Pond	Environmental → Aquatic → Freshwater → Pond	0.74%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	0.74%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.74%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.74%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	21.32%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	20.59%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.44%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	12.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.62%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.68%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.68%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.21%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.47%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.47%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.47%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.47%
Sediment	Environmental → Aquatic → Freshwater → Pond → Sediment	0.74%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	0.74%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.74%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.74%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.74%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.74%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	19.12%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	16.91%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	12.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.35%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.41%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	4.41%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	3.68%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.68%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.68%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.21%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.47%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.47%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.47%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.47%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.47%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.47%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.47%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.47%
Freshwater	Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater	0.74%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	0.74%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.74%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.74%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.74%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.74%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.74%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.74%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300004052	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqC_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004145	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D2	Environmental	Open in IMG/M
3300004282	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Initial sediment	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh	Environmental	Open in IMG/M
3300004779	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009597	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT299	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011403	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT166_2	Environmental	Open in IMG/M
3300011412	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT620_2	Environmental	Open in IMG/M
3300011415	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT469_2	Environmental	Open in IMG/M
3300011417	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT500_2	Environmental	Open in IMG/M
3300011420	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT199_2	Environmental	Open in IMG/M
3300011425	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT244_2	Environmental	Open in IMG/M
3300011429	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT600_2	Environmental	Open in IMG/M
3300011435	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT660_2	Environmental	Open in IMG/M
3300012039	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT534_2	Environmental	Open in IMG/M
3300012167	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT333_2	Environmental	Open in IMG/M
3300012173	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT517_2	Environmental	Open in IMG/M
3300012175	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT399_2	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012228	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT700_2	Environmental	Open in IMG/M
3300012231	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT828_2	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014878	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200A_16_10D	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019228	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT790_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019229	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_1_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019238	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT466_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019248	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_2_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019257	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019263	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300020063	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT730_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020066	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT45_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020067	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT47_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300025310	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027513	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890 (SPAdes)	Environmental	Open in IMG/M
3300027778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare1Fresh (SPAdes)	Environmental	Open in IMG/M
3300027840	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare2Fresh (SPAdes)	Environmental	Open in IMG/M
3300027843	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300030553	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cnb10 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300034115	Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17	Environmental	Open in IMG/M
3300034257	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_17	Environmental	Open in IMG/M
3300034643	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_120 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034664	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiFebDRAFT_109971891	3300000363	Soil	MNRPKTSRVTTLLGTASLLTMAQVEQAYPAEMVAQAEEIPETVLITGSLIRGTEAVGVPVIGLSPQDFAMTGTL
F24TB_154140101	3300000550	Soil	MYSGTLTRAYGARLATLLGTASFLTMGTAIDAKAQGEAAQADEIPETVLITGSLIRGTTAVGVPVTNLSPQDF
JGI25613J43889_102192021	3300002907	Grasslands Soil	MNFVASRENALSARLAALLGSASLLTMANALPAYAQGAVAQNEEIPETVLITGSLIRGTAAVGVPVTNLSPMDFK
soilL2_100623711	3300003319	Sugarcane Root And Bulk Soil	MNFSKMSRVTTLLGTASLLAITQAEGVYAAEVVAQAEEIPETVLITGSLIRGTTAVGVPVVNLSPQDFAM
Ga0055490_101954671	3300004052	Natural And Restored Wetlands	MNRPKTLRVTMLLGTASLLTMSQVERAYSAEVVAQADEIPETVLITGSLIRGTAAVGVPVVNLSPQDFAMTGAITASDLFRTIPQFNVNPGPV
Ga0062593_1011347831	3300004114	Soil	MYSGTLTRAYGARLATLLGTASFLTMGNAIDAHAQGEVAQADEIPETVLITGSLIRGTTAVGVPVTNLSPMDFATTGALTTAD
Ga0055489_100530671	3300004145	Natural And Restored Wetlands	MNFSKTSRVTALLGTASLLAMVQAEDAYGAEVVAQGEEIPETVLITGSLIRGTTAVGVPVINLSPQDLAMTGTLTASDLFRTIPQFNVSPGPVGTQGAAQE
Ga0066599_1015383232	3300004282	Freshwater	MNTSASKVISMRARLATLLGTASFLTMANAGPGLAQGEMVAQAEDIPETVLITGSLIRGTAAVGVPVTNLSPMDFAQ
Ga0063356_1005844663	3300004463	Arabidopsis Thaliana Rhizosphere	MNRPKISRVTTLLGTASLLAIAQMEQAYSAEAVAQAEEIPETVLITGSLIRGTTAVGVPVIGLSPQDFAMTGTLTASDLF
Ga0063356_1013861413	3300004463	Arabidopsis Thaliana Rhizosphere	MNFSKISRVTTLLGTASLLTMAQAEGVYAAEVVAQAEEIPETVLITGSLIRGTAAVGVPVVNLSP
Ga0063356_1016682821	3300004463	Arabidopsis Thaliana Rhizosphere	MNRPKTSRVTTLLGTASLLVMAQAEGVHAAEVLAQADEIPETVLITGSLIRGTTAVGVPVVNLSPQDFAMTGAITASDLFRTIPQFNVN
Ga0063356_1021016951	3300004463	Arabidopsis Thaliana Rhizosphere	MNLAKTSRVTALLGTASFLTMAQAEGVYAGEVVAQAEELPETILVTGSLIRGTVAVGVPVIGLSPQ
Ga0063356_1049058401	3300004463	Arabidopsis Thaliana Rhizosphere	MSWTTSRHGLRLVGLMGSASLLTMANANPVFAQGEVAQADEIPETVLITGSLIRGTAAVGVPVTNLSPMDFAQTGALTTA
Ga0063356_1051819891	3300004463	Arabidopsis Thaliana Rhizosphere	MNFPKTSRVTTLLGTASLLAMAQAEGVYAAEAVAQAEEIPETVLITGSLIRGTTAVGVPVIGLSPQDFAMTGTLTA
Ga0062383_100735912	3300004778	Wetland Sediment	MNFPKTSRVTTLLGTASLLAMAQADSAYAGEAVAQADEIPETVLITGSLIRGTTAVGVPVVNLSPQDFAMTGAITASDLFRTIPQFNVNPGP
Ga0062380_104846461	3300004779	Wetland Sediment	MNYPKTSRLTALLGTASLLTLAQAERASAAEMVAQAEEIPETVLITGSLIRGTTAVGVPVVNLSPQDFAMTGTLTASDLFRTIPQFNVNPGPVAT
Ga0062594_1011352481	3300005093	Soil	MTYPRTSRFTALLGSASLLTLANAEGGYAGEVVAQAEDIPETVLITGSLIRGTTAVGVPVVNLSPQDFAMTGTLTASDLFRTIPQFNVNPGPVATGAANN
Ga0066388_1052816421	3300005332	Tropical Forest Soil	MTYQRTSRLTALLGSASLLTIAQSEGVYAQGEMVAQAEEIPETVLITGSLIRGTAAVGVPVVNLSPQDFAMTGVLTASDLFRTIPQFN
Ga0070673_1014517581	3300005364	Switchgrass Rhizosphere	MNPTTPSIRASRLTTLLGTASLLSMAQADNVYAQGAVAQAEEIPETVLITGSLIRGTAAVGVPVVNLSPQDFAMTGTLT
Ga0070703_104316991	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MNLAKTSRVTALLGTASVLTMAQAEGVDAGEVIAQAEELPETVLVTGSLIRGTTAVGVPVVNLSPQDFAMTG
Ga0070701_111569351	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MSWTTSRHGLRLVGLMGSASLLTMANANPVFAQGEVAQADEIPETVLITGSLIRGTAAVGVPVTNLSPMDFAQTGA
Ga0070705_1009819351	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MNLAKTSRVTALLGTASFLTMAQAEGVYAGEVIAQAEELPETVLVTGSLIRGTTAVGVPVVNLSPQDFAMTGTITAADLFRTI
Ga0070695_1014604471	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MNSDTFGRSTAAHLTALSGSVSLLALASAASPAFAQGEMVAQAEEIPETVLITGSLIRGTAAVGVPVTNLNPSDFAMIGAL
Ga0068854_1008263292	3300005578	Corn Rhizosphere	MYSGTLTRAYGARLATLLGTASFLTMGNAIDAHAQGEVAQADEIPETVLITGSLIRGTTAVGVPVTNLSPMDFATTGAL
Ga0075428_1014152442	3300006844	Populus Rhizosphere	MNYPKTSRLTALLGTASFLTIAQTEGAFAGEVVAQAEEIPETVLITGSLIRGTAAVGVPVVNLSPQ
Ga0075421_1001327141	3300006845	Populus Rhizosphere	MNYPKTSRLTALLGTASLLTIAQTAGAFAGEVVAQAEEIPETVLITGSLIRGTTAVGVPVVNLSPQDFAMTGTLTASDLFRTIPQFNVNPGPVATQA
Ga0075421_1025293811	3300006845	Populus Rhizosphere	MNSDSARLTAGTRLAVLGGTASLLAMASAMPGYAQGQAAAEADEVPETVLITGSLIRGTSAIGAPVTNLTPQDF
Ga0075430_1006429381	3300006846	Populus Rhizosphere	MYYPKTSRLTALLGTASLLTLAQAERAYAAEMVAQAEEIPETVLITGSLIRGTTAVGVPVVNLSPQDFAMTGTLTASDLFRTIPQFNVNPG
Ga0075430_1006631252	3300006846	Populus Rhizosphere	MNLKAQCLSARSTRLATLFGTASLLTLAQTTTGHAQGEVAQAEEVPETVLITGSLIRGTAAVGVPVTNLNPQDFAM
Ga0075430_1017183981	3300006846	Populus Rhizosphere	MNSTKSRLNERGARLATLLGTASVLSVANATDVLAQGEVVAQAEEIPETVLITGSLIRGTAAVGVPVTNLTPQDFAQT
Ga0075431_1011801222	3300006847	Populus Rhizosphere	MNPTTSRLCIRGSRLTALLGTASFLTIAQTEGAFAQGEVAQAEEIPETVLITGSLIRGTTAVGVPVVNLSPQDFAMTGTLTASDLFRT
Ga0075420_1000683711	3300006853	Populus Rhizosphere	MNYPKTSRLTALLGTASFLTIAQTEGAFAGEVVAQAEEIPETVLITGSLIRGTAAVGVPVVNLSPQDFAM
Ga0075420_1018636861	3300006853	Populus Rhizosphere	MTSIRSANSIGAKLTALLGSASLLTIAYTGAAYAQGEQVAQTEEIPETVLITGSLIRGTAAVGVPVTNLSPMDFAVVGAL
Ga0068865_1019074141	3300006881	Miscanthus Rhizosphere	MNLSKTSRVTTLLGTASLLAMAQAEEVYSAEMVAQAEEIPETVLITGSLIRGTTAVGVPVIGLSPQDFAMTGTLTASDLFR
Ga0079215_100420401	3300006894	Agricultural Soil	MYSNTFGRANGARLATLLGTTSFLTMGYAIDAQAQGEVVAQADEIPETVLITGSLIRGTTAVGVPVTNLSPQDFA
Ga0079218_139351401	3300007004	Agricultural Soil	MNRPKTSRVTTLLGTASFLTMAQAEGVYAAAVVAQADEIPETVLITGSLIRGTAAVGVPVINLSPQDFAMTGTLTTSDLFRTIPQFNV
Ga0111539_104628721	3300009094	Populus Rhizosphere	MNPTTSRLCIRGSRLTALLGTASFLTIAQTEGAFAQGEVAQAEEIPETVLITGSLIRGTTAVGVPVVNLSPQDFAMTGTLTASDLFRTIPQ
Ga0111539_125026411	3300009094	Populus Rhizosphere	MNPITPRQNAGTHIATLLGSVSLLAVAGAMPALAQGQVTQADEIPETVLITGSLIRGTAAVGVPVVNLSPQDFAMTGTLTASDLFRTIPQFN
Ga0111539_130184881	3300009094	Populus Rhizosphere	MNYPNTSRLTALLGTASFLTIAQTEGAFAGEVVAQAEEIPETVLITGSLIRGTTAVGVPVVNLSPQDFAMTG
Ga0075418_115770281	3300009100	Populus Rhizosphere	MNPTTSRLCIRGSRLTALLGTASFLTIAQTEGAFAGEVVAQAEEIPETVLITGSLIRGTTAVGVPVVNLSPQDFAMTGTLTASDLFRTIPQFNVNPGPVA
Ga0075418_117033302	3300009100	Populus Rhizosphere	MNLNTGANSIGAKLTALLGSVSLLSLAYASEAYAAEQIAQAEEIPETVLITGSLIRGTAAVGVPVTNLAPMDFAVTGALTTA
Ga0075418_120935281	3300009100	Populus Rhizosphere	MNPTTSRLCIRGSRLTALLGTASLLTIAQTEGAFAQGEVAQAEEIPETVLITGSLIRGTAAVGVPVVNLSPQDFAMTGTL
Ga0075418_125314951	3300009100	Populus Rhizosphere	MSMNPKTSILATLLGTASLATMAVAIPAFAQGQAVTQAEEIPETVLITGSLIRGTIAVGVPVVNLGPQDFAQTGAISTADLFRSIPEFNVNVGGGVGTVAAG
Ga0114129_122829692	3300009147	Populus Rhizosphere	MNYPNTSRLTALLGTASFLTIAQTEGAFAGEVVAQAEEIPETVLITGSLIRGTAAVGVPVVNLAPQ
Ga0105243_126358591	3300009148	Miscanthus Rhizosphere	MNFSKTSRVTALLGTASLLTMAQAEGVYAGEVVAQAEEIPETVLITGSLIRGTTAVGVPVIGLSPQ
Ga0111538_101426174	3300009156	Populus Rhizosphere	MNPMRGANSIGARLAALLGSASLLTLACTSAAFAQQEQVAQAEEIPETVLITGSLIRGTAAVGVPVTNLSPMDFAVTGSL
Ga0111538_104315154	3300009156	Populus Rhizosphere	MNSSKPCFEAHAVRFATLLGTASAITIATAMDAYAQGEMVAQAEEIPETVLITGSLIRGTAAVGVPVTNLSPQDFAMTGALNTAD
Ga0111538_107721562	3300009156	Populus Rhizosphere	MISIISERSSMRAKLAGLLGTASFFALANAGDALAQGEVAQAEEIPETVLITGSLIRGTTAVGVPVTNLSPQDFATTGALTTA
Ga0105242_130732871	3300009176	Miscanthus Rhizosphere	MNFPKTSRVTTLLGTASLLAIAQAEGAYAGEVVAEEIPETVLITGSLIRGTTAVGVPVVNLSPQDF
Ga0105259_10808081	3300009597	Soil	MNPNTARQNAGTRITALLGSVSLLAVAGAAPAIAQGEMVAQAEEIPETVLITGSLIRGTTAVGVPVTNLSPQDFANVG
Ga0126384_123470931	3300010046	Tropical Forest Soil	MTALLGTASLLAMTQAERGYAGEAVAQAEEIPETVLITGSLIRGTAAVGVPVVNLSPQDFAMTGTLTASD
Ga0126382_110223511	3300010047	Tropical Forest Soil	MTALLGTASLLAMTQAERGYAGEAVAQAEEIPETVLITGSLIRGTAAVGVPVVNLSPQDFAMTGTL
Ga0126382_119159701	3300010047	Tropical Forest Soil	MNFPKTSRVTALLGTASLLAMAQAEQVYAGEVIAQAEELPETILVTGSLIRGTVAVGVPVVNLSPQDLAMTGTLTVA
Ga0126382_124718151	3300010047	Tropical Forest Soil	MNFSKTSRVTALLGTASLLTMAQAEGVYAGEVIAQAEELPETILVTGSLIRGTVAVGVPVVNLSPQDLA
Ga0126383_136271251	3300010398	Tropical Forest Soil	MNLISSNDNISARLAALLGSASFLAIANAMPAEAQGMAVAQAEEVPETVLITGSLIRGTAAVGVPVTNLTPQDFAMTGA
Ga0134127_102163251	3300010399	Terrestrial Soil	MNFPKTSRLTTLLGTASLLAIAQTEGVHAAEVVAQAEEIPETVLITGSLIRGTAAVGVPVVNLSPQDFAMTGAITTSDLFRTIPQFNV
Ga0134127_112947281	3300010399	Terrestrial Soil	MNPTTSRLCIRGSRLTALLGTASLLTMAQTEGAFAGEVVAQAEEIPETVLITGSLIRGTAAVGVPVVNLSPQDFAMTGTLTASDLFRTIPQFNVNPGP
Ga0134127_128876791	3300010399	Terrestrial Soil	LLGTTSALAITSVLDAHAQGEVAQAEEIPETVLITGSLIRGTAAVGVPVTNLSPQDFATTGALN
Ga0137313_10216491	3300011403	Soil	MNFPKTSRLTALLGTASLLAIAQAEGVHAGEVVAQAEEIPETVLITGSLIRGTSAVGVPVVNLSPQDFAMTGAITP
Ga0137313_11022281	3300011403	Soil	MNRPKLSRVTTLLGTASLLAMAGAMPSYAQGQVGAQEEEVPEVVLITGSLIRGTAAVGVPVINLSPQDFAMTGTLTASDLFRTIPQFNVNPGPVATGAANNE
Ga0137424_11190771	3300011412	Soil	MNFPKTSRVTTLLGTASLLVMAQAEGVRAAEVVAQAEEIPETVLITGSLIRGTTAVGVPVIGLSPQDFAMTGTLTASDLFRNIPQFNVSPGPVATQGA
Ga0137325_10560621	3300011415	Soil	MYSGTLARAYGARLATLLGTASFLTMGNAIDAHAQGEVAQADEIPETVLITGSLIRGTTAVGVPVTNLSPMD
Ga0137326_10014711	3300011417	Soil	MLTLAQAERAYAQEVVAQAEEIPETVLITGSLIRGTTAVGVPVINLSPQDFAMTGTLTASDLFRTIPQFNVNPGPVATGAANNERGT
Ga0137314_10212861	3300011420	Soil	MNFPKTSRLTALLGTASLLAIAQAEGVHAGEVVAQAEEIPETVLITGSLIRGTSAVGVPVVNLSPQDFAMTGAITTSDLFRTIPQFNVNPGPVSTQGNNRQR
Ga0137314_10756131	3300011420	Soil	MNRPKTSPLTALLGTASLLAMAQAEGVYAGEVVAQAEEIPETVLITGSLIRGTTAVGVPVIGLSPQDFAM
Ga0137441_11636381	3300011425	Soil	MNSIKGANSIGAKLTALLGSASLLTLAYASSAYAQGEQVAQAEEIPETVLITGSLIRGTAAVGVPVTNLSPMDFAVTGAL
Ga0137455_12196961	3300011429	Soil	MNFPKTSRLTALLGTASLLVMAQVEGVYAAEVVAQAEEIPETVLITGSLIRGTTAVGVPVVNLSPQDFAMTGAITTSDLFRTIPQFNVNPGPV
Ga0137426_10069281	3300011435	Soil	MHPTTSELCVRGSRLTALLGTASLLALAQGERAYAQEVVAQAEEIPETVLITGSLIRGTTAVGVPVINLSPQDFAMTGTLTASDLFRTIPQFNVNPGPVAT
Ga0137421_12374051	3300012039	Soil	MHFPKTSRVTTLLGTASLLAIAQAEGVYAAEVVAQAEEIPETVLITGSLIRGTAAVGVPVVNLSPQDFAMTGAITTSDLFR
Ga0137319_10569372	3300012167	Soil	MNLTMSRLTERGARLATLLGTASFFTIASALDAYAQGYMVAQAEDIPQTVLITGAMIRGTTAVGVPVTNLSPQ
Ga0137319_11145381	3300012167	Soil	LLGTASFLTLALAEGAYAGEAVAQSEEIPETVLITGSLIRGTAPVGVPLVNLSPQDFARTGTLTASDLFRTIPQFNVSPGPVATGVANNERGVRVN
Ga0137327_10563711	3300012173	Soil	LLGTASFLTLALAEGAYAGEAVAQSEEIPETVLITGSLIRGTAPVGVPLVNLSPQDFARTGTLTASDLFRTIPQ
Ga0137327_11528951	3300012173	Soil	MYSSTFGRANGARLATLLGTTSSLTMGYAIDAHAQGEVAQADEIPETVLITGSLIRGTTAVGVPVTNLSPQDFAMSGALTTADLF
Ga0137321_10911251	3300012175	Soil	MSYPKTSRLTALLGTASLLALAQAERAYAQEVVAQAEDIPETVLITGSLIRGTTAVGVPVVNLSPQDFAMTGTLT
Ga0137363_103703842	3300012202	Vadose Zone Soil	MNSSSLGLDAYGVRLATLLGSASLLTMANALPAYAQGAVAQNEEIPETVLITGSLIRGTAAVGVPVTNLSPQDFAMTGALTTA
Ga0137459_10912581	3300012228	Soil	MNFPKISRVTTLLGTASLLTMAQVEQAYPAEVVAQADEIPETVLITGSLIRGTAAVGVTMVNLSPQDFAMTGSITASDLFRTIPQFNVNPGPV
Ga0137465_10839622	3300012231	Soil	MNPNTARQNAGTRITALLGSVSLLAVAGAVPAVAQGGMVTQSEEIPETVLITGSLIRGTTAVGVPVTNLSPQDFAMTGALTTA
Ga0137360_100394114	3300012361	Vadose Zone Soil	MNSSSLGLDAYGVRLATLLGSASLLTMANALPAYAQGAVAQNEEIPETVLITGSLIRGTAAVGVPVTNLSPQ
Ga0157295_103888261	3300012906	Soil	MNFPKTSRVTTLLGTASLLAIAQAEGVNAAEMVAQAEEIPETVLITGSLIRGTSAVGVPVVNLSPQDFAMTGAITTSDLFR
Ga0126375_104092142	3300012948	Tropical Forest Soil	MNSHARALSAKLTTLLGTASLLTLASAASAQQVAQGPVAQAEEVPETVLITGSLIRGTAAVGVPVTNLSPQDFAMTGALTT
Ga0157380_100817881	3300014326	Switchgrass Rhizosphere	MTYPRTSRFTALLGSASLLTLANAEGGYAGEVVAQAEDIPETVLITGSLIRGTTAVGVPVVNLSPQD
Ga0180065_11182221	3300014878	Soil	MNAITSERFSARAKLAALLGTTSVFALAGAGDAYAQGEVVAQAEEIPETVLITGSLIRGTAAVGVPVTNLSPQDFAMTGALTTADLFRTFP
Ga0182041_114197852	3300016294	Soil	MYSTGYRLNTLGARLATLLGSASLLTLANATAAQAQMGQMAQAEEVPENVLITGSLIRGAAAVGVPVTNLSP
Ga0184637_106709831	3300018063	Groundwater Sediment	MNSSKSRLDNYAARLATLLGTASVFAIAGALDAYAQGEVVAQAEEIPETVLITGSLIRGTAAVGVPVTNLSPQDFANIGALNTADL
Ga0184637_107464501	3300018063	Groundwater Sediment	MYPNTPRHTVGSRLTAFLGSASLLALAGSMPALAGEVVAQPEEIPETVLITGSLIRGTAAVGVPVINL
Ga0184627_102711301	3300018079	Groundwater Sediment	MHPTTSQLCVRGSRLTALLGTASLLTLAQAEGAYAGEVIAQAEEIPETVLITGSLIRGTTAVGVPVINLSPQDFAMTGTLTASDLFRTIPQ
Ga0184629_100275883	3300018084	Groundwater Sediment	MSWTTSRRGSRLVALMGSASLLTMANANSAVAQGEVAQAEEIPETVLITGSLIRGTAAVGVPVTNLSPQDFAMTGALTTADLFR
Ga0184629_105002042	3300018084	Groundwater Sediment	MYSGTLTRAYGARFATLLGTTSFLTMGYALDAQAQGEVAQADEIPETVLITGSLIRGTTAVGVPVTNLSPMDFAQSGALTTAD
Ga0190272_108419621	3300018429	Soil	MNLCKSNLDFNAGRLATLLGTASVLTIAGSLDTYAGEAVAQAEEVPETVLITGSLIRGTAAVGVPVTNLSPMDF
Ga0190272_111149973	3300018429	Soil	MNTNASNVISIRARLATLLGTASFVTMAGASPALAQGEVVAQADEIPETVLITGSLIRGTTAVGVPVTNLSPMDFAQSGALTTA
Ga0190271_102810392	3300018481	Soil	MNRPKMSRVTTLLGTASLLTMAQAEGAYGAQVVAQADEIPETVLITGSLIRGTAAVGVPVINLAPQDFAMTGALTTSDLFRTIPQFNVAPGPVATQGAAE
Ga0180119_11440581	3300019228	Groundwater Sediment	MTYPKNMRLTALLGTASFLVIAQTEGVFAGEVVAQAEEIPETVLITGSLIRGTAAVGVPVVNLSPQDFAMTGTLTASDLFRTIPQFNVNP
Ga0180116_10328111	3300019229	Groundwater Sediment	MNLIKSRLDERGVRLAALFGTASVLALTNGMDAYAQGEVVAQAEEIPETVLITGSLIRGTTAVGVPVVNLSPQDFAMTGTLTASDLFRTIPQFNVNPG
Ga0180116_10335031	3300019229	Groundwater Sediment	MHFPKTSRVTTLLGTASLLAIAQAEGVYAAEVVAQADEIPETVLITGSLIQGAVSVGVPVSSLKTLDF
Ga0180112_11391841	3300019238	Groundwater Sediment	MNFPKTSRLTALLGTASLLVMAQAEGVHAGEVVAQAEEIPETVLITGSLIRGTAAVGVPVVNLSPQDFAMTGAITASD
Ga0180112_12774551	3300019238	Groundwater Sediment	MNSSKLSLDSYAVRLAALLGSASVFTIAGALDAYAQGEMVAQAEDIPETVLITGSLIRGTAAVGVPVTNLNPSDFANVGALNT
Ga0180117_11494451	3300019248	Groundwater Sediment	MHFPKTSRVTTLLGTASLLVMAQAEGVHAAEVVAQADEIPETVLITGSLIRGTTAVGVPVVNLSPQDFAMTGAITASDLFRTIPQ
Ga0180117_14210181	3300019248	Groundwater Sediment	MNLIKSRLDERGVRLATLFGTASVLALTSGMDAYAGEVVAQTEDIPETVLITGSLIRGTTAVGVPVTNLNPSDFANIGALN
Ga0180115_13605961	3300019257	Groundwater Sediment	MNFPKTSRLTALLGTASLLVMAQVEGVYAAEVVAQAEEIPETVLITGSLIRGTTAVGVPVVNLSPQD
Ga0184647_13825131	3300019263	Groundwater Sediment	MNRPKTSPLTMLLGTASLLTMAQAEGVYAGEVVAQAEEPPETVLVTGSLIRGTAAVGVPVINLSPQDFAMTGALT
Ga0190264_102499812	3300019377	Soil	MSWNTTSHGSRLAALLGSASLMTMANTSPALAQGEMVAQADEIPETVLITGPLIRGPAAVGVPVTNLSPMDFAMTGALTTAD
Ga0190264_119814121	3300019377	Soil	MNFPKTSRVTTLLGTASLLAIIQAEGVYAAEVAQAEDIPETVLITGSLIRGTTAVGVPVVNLSP
Ga0190264_123005591	3300019377	Soil	MNYAKTSRLTALLGTASLLTLAQSERIHAAEMVAQAEEIPETVLITGSLIRGTAAVGVPVVNLSPQDFAMTGTLTASDLFRTIPQFNVNPGPVATG
Ga0190264_123182631	3300019377	Soil	MNSGKFSLDSYALRLTTLLGSASVLSIAGALDAYAQGEVVAQAEEIPETVLITGSLIRGTAAVGVPVTNLSPMDFANVGALNTADLFRAFP
Ga0180118_12265351	3300020063	Groundwater Sediment	MNHPKTSRLTALLGTVSLLTLAQAESVYGGEVVDQAEEIPETVLITGSLIRGTTAVGVPVINLVPQDFAMTGALTPSDLLRTIPQFNVSPGP
Ga0180108_10747301	3300020066	Groundwater Sediment	MMSIKARPGEGRARLATLFGTASVLALANATDALAGEVVAQAEEIPETVLITGSLIRGTAAVGVPVTNLTPQDFAIT
Ga0180108_11296531	3300020066	Groundwater Sediment	MNRPKTSPLTALLGTASLLAMAQAEGVYAGEVVAQAEEIPETVLITGSLIRGTTAVGVPVIGLSPQDFAMTGTLTASD
Ga0180109_12484911	3300020067	Groundwater Sediment	MNSTLSRLTKRASRLATLLQTASVLVLANATDAHAQGEVAQAEEIPETVLITGSLIRGTTAVGVPVIGLTPQDLAMTGTLTTADLFRTIPRSMSLPAQ
Ga0180109_14056071	3300020067	Groundwater Sediment	MTLINARPGEGRARLATLFGTASVLALANATDALAGEVVAQAEEIPETVLITGSLIRGTAAVGVPVTNL
Ga0210378_101331801	3300021073	Groundwater Sediment	MNFPKTLRVTTLLGTASLLAIAQAEGAYAGEVVAQAEEIPETVLITGSLIRGTTAVGVPVVNLSPQDFAMTG
Ga0210379_100860181	3300021081	Groundwater Sediment	MSWTTSRRGSRLVALMGSASLLTMANANSAVAQGEVAQAEEIPETVLITGSLIRGTAAVGVPVTNLSPQDFAMTGA
Ga0210379_102432332	3300021081	Groundwater Sediment	MISIQSRLNERGARLATLLGTASVLTLANTMDAAAQGEMVAQAEEIPETVLITGSLIRGTAAVGVPVTNLTPQDFA
Ga0209172_102105581	3300025310	Hot Spring Sediment	MDWNTAPRILGTRLTGLLGSTSLIAVSGAMPAMAAEVVAQAEEIPETVLITGSLIRGTAAVGVPVTNLS
Ga0207669_113695461	3300025937	Miscanthus Rhizosphere	MNFPKISRVTTLLGTASLLAIAQADGAYAAEVAQAEQIPETVLITGSLIRGTTAVGVPVVNLSP
Ga0207651_111591321	3300025960	Switchgrass Rhizosphere	MNPTTPSIRASRLTTLLGTASLLSMAQADNVYAQGAVAQAEEIPETVLITGSLIRGTAAVGVPVVNLSPQDFAMTGTLTASDLFRTIPQFNVNPG
Ga0207640_106277421	3300025981	Corn Rhizosphere	MYSGTLTRAYGARLATLLGTASFLTMGNAIDAHAQGEVAQADEIPETVLITGSLIRGTTAVGVPVTNLSPMDFATTGALT
Ga0207708_110730741	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MNLAKTSRVTALLGTASFLTMAQAEGVYAGEVIAQAEELPETVLVTGSLIRGTTAVGVPVVNLSRKTSR
Ga0208685_10372922	3300027513	Soil	MTYPKTSRLTALLGSASLLTLAQSEGVYSAEMVAQAEDIPETVLITGSLIRGTTAVGVPVTNLSPQDFANIG
Ga0208685_10939441	3300027513	Soil	MNPTTSQLCIRGSRLTALLGTASLLTMAQAEGAYAAEMVAQAEEIPETVLITGSLIRGTAAVGVPVVNLSPQDFAMTGTLTASDLFRT
Ga0208685_10986481	3300027513	Soil	MNSIKGANSIGAKLTALLGSASLLTLAYASSAYAQGEQVAQAEEIPETVLITGSLIRGTAAVGVPVTNLSPMDFAVT
Ga0209464_101060372	3300027778	Wetland Sediment	MHPTAAQLCVRGSRLTALLGTASLLTLAQAEGAYAAEMVAQAEEIPETVLITGSLIRGTTAVGVPVVNLSPQDFA
Ga0209683_100137833	3300027840	Wetland Sediment	MNFPKTSRVTTLLGTASLLAMAQADSAYAGEAVAQADEIPETVLITGSLIRGTTAVGVPVVNLSPQDFAMTGAITASDLFRTIPQFN
Ga0209798_100783582	3300027843	Wetland Sediment	MNFPKTSRVTTLLGTASLLAMAQADSAYAGEAVAQADEIPETVLITGSLIRGTTAVGVPVVNLSPQDFAMTGAITASDLFRTIPQFNV
Ga0207428_105951881	3300027907	Populus Rhizosphere	MNFSKTSRVTALLGTASFLTMAQAEGVYAGEVVAQAEEIPETVLITGSLIRGTTAVGVPVIGLSPQDFAMTGTL
Ga0207428_107959301	3300027907	Populus Rhizosphere	MNYPNTSRLTALLGTASFLTIAQTEGAFAGEVVAQAEEIPETVLITGSLIRGTAAVGVPVVNLSPQDFAMTGTLTASDLFRTIPQFNVNPGPVAT
Ga0209382_101305591	3300027909	Populus Rhizosphere	MNLSKTSRVTALLGTASLLAMAQAEGVYAGEVVAQAEEIPETVLITGSLIRGTAAVGVPVIGLSPQDFAMTGTLTASD
Ga0209382_107767881	3300027909	Populus Rhizosphere	MNFSTSERSSTRATLAGLLGTASFFALANAGDALAQGEVAQAEEIPETVLITGSLIRGTAAVGVPVTNLSPQDFA
Ga0209382_113102721	3300027909	Populus Rhizosphere	MNYPKTSRLTALLGTASLLTIAQTAGAFAGEVVAQAEEIPETVLITGSLIRGTTAVGVPVVNLSPQDFAMTGTLTASDLFRIIPQFNVNPGPVATGAANNE
Ga0209382_119261701	3300027909	Populus Rhizosphere	MNFSKISRVTALLGTASLLAIAQAEGVYAGEVVAQAEEIPETVLITGSLIRGTAAVGVPVVNLSPQDFAMTGAITASDLFR
Ga0247645_12441721	3300030553	Soil	MSWTTSSHGLRLVALMGSASLLTMANANPAVAQGEVAQADEIPETVLITGSLIRGTAAVGVPVTNLSPMDFA
Ga0310904_110701881	3300031854	Soil	MSLTTSRHGLRLVALMSSASLLTMANANPASAQGEVAQADEIPETVLITGSLIRGTAAVGVPVTNLSPMDF
Ga0364945_0118091_2_238	3300034115	Sediment	MYSRALTRAYGARLATLLGTASVLTMGNAIDAKAQGEVAQAEDIPETVLITGSLIRGTTAVGVPVTNLSPQDFAMTGAL
Ga0370495_0255673_2_217	3300034257	Untreated Peat Soil	MNFPKTSRLTALLGTASLLTMAQAEGVYAGEVVAQAEEIPETVLITGSLIRGTTAVGVPVIGLSPQDFAMTG
Ga0370545_108115_3_257	3300034643	Soil	MNYPRTSRLAALLGSASLLTLAQSENVHAQGMVVAQEDIPETVLITGSLIRGTTAVGVPVVNLSPQDFAMTGTLTASDLFRTIPQ
Ga0370545_126610_2_262	3300034643	Soil	MNRPKTSRVTTLLGTASLLVMAQAEGVHAGEALAQAEEIPETVLITGSLIRGTAAVGVPVVNLSPQDFAMTGAITASDLFRTIPQFN
Ga0314786_138938_286_558	3300034664	Soil	MNFPKTSRVTTLLGTASLLAIAQAEGVNAAEMVAQAEEIPETVLITGSLIRGTAAVGVPVVNLSPQDFAMTGTLTASDLFRTIPQFNVNPG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F057185

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences