Metagenome / Metatranscriptome Family F057278

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F057278
Family Type	Metagenome / Metatranscriptome
Number of Sequences	136
Average Sequence Length	58 residues
Representative Sequence	MSTEPTPPEKTPEGQVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRIEGQN
Number of Associated Samples	113
Number of Associated Scaffolds	136

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	21.21 %
% of genes near scaffold ends (potentially truncated)	27.21 %
% of genes from short scaffolds (< 2000 bps)	69.12 %
Associated GOLD sequencing projects	99
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (97.059 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (16.912 % of family members)
Environment Ontology (ENVO)	Unclassified (24.265 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.382 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 20.48% β-sheet: 18.07% Coil/Unstructured: 61.45%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.57
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.57
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 136 Family Scaffolds
PF00528	BPD_transp_1	22.06
PF13529	Peptidase_C39_2	9.56
PF12911	OppC_N	8.09
PF00496	SBP_bac_5	2.21
PF00296	Bac_luciferase	1.47
PF01575	MaoC_dehydratas	0.74
PF13191	AAA_16	0.74
PF00202	Aminotran_3	0.74
PF01494	FAD_binding_3	0.74
PF08450	SGL	0.74
PF02780	Transketolase_C	0.74
PF05552	TM_helix	0.74

COG ID	Name	Functional Category	% Frequency in 136 Family Scaffolds
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.47
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	1.47
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.74
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.74
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.74
COG0668	Small-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	0.74
COG3264	Small-conductance mechanosensitive channel MscK	Cell wall/membrane/envelope biogenesis [M]	0.74
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.74
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.74

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.06 %
Unclassified	root	N/A	2.94 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.06 %
Unclassified	root	N/A	2.94 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.06 %
Unclassified	root	N/A	2.94 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	57.35 %
Unclassified	root	N/A	2.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.21 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	57.35 %
Unclassified	root	N/A	2.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.21 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	57.35 %
Unclassified	root	N/A	2.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.21 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	56.62 %
Unclassified	root	N/A	2.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.21 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	56.62 %
Unclassified	root	N/A	2.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.21 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664021\|ICCgaii200_c0405621	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	559	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105509366	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1221	Open in IMG/M
3300000787\|JGI11643J11755_11392559	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	657	Open in IMG/M
3300000956\|JGI10216J12902_104973123	All Organisms → cellular organisms → Bacteria	1812	Open in IMG/M
3300002557\|JGI25381J37097_1068562	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	572	Open in IMG/M
3300002558\|JGI25385J37094_10163736	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	595	Open in IMG/M
3300002561\|JGI25384J37096_10008689	All Organisms → cellular organisms → Bacteria	3816	Open in IMG/M
3300003319\|soilL2_10065710	All Organisms → cellular organisms → Bacteria	3062	Open in IMG/M
3300003324\|soilH2_10320978	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1371	Open in IMG/M
3300003371\|JGI26145J50221_1038581	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	504	Open in IMG/M
3300003998\|Ga0055472_10140064	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	711	Open in IMG/M
3300003999\|Ga0055469_10005003	All Organisms → cellular organisms → Bacteria	2352	Open in IMG/M
3300004463\|Ga0063356_105518144	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	543	Open in IMG/M
3300004480\|Ga0062592_100277264	All Organisms → cellular organisms → Bacteria	1251	Open in IMG/M
3300004643\|Ga0062591_100197172	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1473	Open in IMG/M
3300005166\|Ga0066674_10044083	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2000	Open in IMG/M
3300005171\|Ga0066677_10054229	All Organisms → cellular organisms → Bacteria	2014	Open in IMG/M
3300005175\|Ga0066673_10013838	All Organisms → cellular organisms → Bacteria	3547	Open in IMG/M
3300005176\|Ga0066679_10039567	All Organisms → cellular organisms → Bacteria	2656	Open in IMG/M
3300005180\|Ga0066685_10018838	All Organisms → cellular organisms → Bacteria	4090	Open in IMG/M
3300005186\|Ga0066676_10040260	All Organisms → cellular organisms → Bacteria	2601	Open in IMG/M
3300005186\|Ga0066676_10718919	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	680	Open in IMG/M
3300005332\|Ga0066388_107020072	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	566	Open in IMG/M
3300005444\|Ga0070694_100559338	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	917	Open in IMG/M
3300005445\|Ga0070708_100508335	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1137	Open in IMG/M
3300005468\|Ga0070707_100143235	All Organisms → cellular organisms → Bacteria	2326	Open in IMG/M
3300005556\|Ga0066707_10038886	All Organisms → cellular organisms → Bacteria	2693	Open in IMG/M
3300005558\|Ga0066698_10124257	All Organisms → cellular organisms → Bacteria → Proteobacteria	1723	Open in IMG/M
3300005560\|Ga0066670_10089527	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1698	Open in IMG/M
3300005575\|Ga0066702_10490522	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	749	Open in IMG/M
3300005576\|Ga0066708_10910782	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	548	Open in IMG/M
3300005713\|Ga0066905_100788897	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	823	Open in IMG/M
3300005985\|Ga0081539_10000069	All Organisms → cellular organisms → Bacteria	236854	Open in IMG/M
3300006034\|Ga0066656_10082367	All Organisms → cellular organisms → Bacteria	1922	Open in IMG/M
3300006049\|Ga0075417_10094341	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1351	Open in IMG/M
3300006049\|Ga0075417_10234734	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	876	Open in IMG/M
3300006049\|Ga0075417_10314134	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	762	Open in IMG/M
3300006755\|Ga0079222_10016946	All Organisms → cellular organisms → Bacteria	2822	Open in IMG/M
3300006794\|Ga0066658_10107105	All Organisms → cellular organisms → Bacteria	1337	Open in IMG/M
3300006800\|Ga0066660_10010678	All Organisms → cellular organisms → Bacteria	4924	Open in IMG/M
3300006806\|Ga0079220_10024208	All Organisms → cellular organisms → Bacteria	2607	Open in IMG/M
3300006845\|Ga0075421_100146548	All Organisms → cellular organisms → Bacteria	2951	Open in IMG/M
3300006845\|Ga0075421_100188072	All Organisms → cellular organisms → Bacteria	2564	Open in IMG/M
3300006846\|Ga0075430_100693303	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	839	Open in IMG/M
3300006871\|Ga0075434_102063645	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	575	Open in IMG/M
3300006880\|Ga0075429_100570930	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	991	Open in IMG/M
3300006880\|Ga0075429_100856471	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	796	Open in IMG/M
3300006903\|Ga0075426_10458223	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	945	Open in IMG/M
3300006903\|Ga0075426_10930851	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	656	Open in IMG/M
3300006954\|Ga0079219_10005391	All Organisms → cellular organisms → Bacteria	3870	Open in IMG/M
3300006969\|Ga0075419_11372216	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	527	Open in IMG/M
3300007255\|Ga0099791_10009331	All Organisms → cellular organisms → Bacteria	4073	Open in IMG/M
3300007255\|Ga0099791_10395021	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	665	Open in IMG/M
3300007255\|Ga0099791_10589628	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	543	Open in IMG/M
3300007258\|Ga0099793_10588414	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	557	Open in IMG/M
3300007265\|Ga0099794_10190918	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1047	Open in IMG/M
3300009100\|Ga0075418_10026350	All Organisms → cellular organisms → Bacteria	6355	Open in IMG/M
3300009100\|Ga0075418_10261546	All Organisms → cellular organisms → Bacteria	1843	Open in IMG/M
3300009143\|Ga0099792_10570268	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	718	Open in IMG/M
3300009147\|Ga0114129_10322619	All Organisms → cellular organisms → Bacteria → Proteobacteria	2053	Open in IMG/M
3300009162\|Ga0075423_11408660	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	746	Open in IMG/M
3300009162\|Ga0075423_12314982	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	585	Open in IMG/M
3300009817\|Ga0105062_1078152	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	635	Open in IMG/M
3300010046\|Ga0126384_10585112	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	975	Open in IMG/M
3300010046\|Ga0126384_10632740	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	940	Open in IMG/M
3300010048\|Ga0126373_12799915	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	544	Open in IMG/M
3300010119\|Ga0127452_1103281	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	555	Open in IMG/M
3300010133\|Ga0127459_1062179	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	509	Open in IMG/M
3300010360\|Ga0126372_10070232	All Organisms → cellular organisms → Bacteria	2487	Open in IMG/M
3300011269\|Ga0137392_10539654	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	969	Open in IMG/M
3300011333\|Ga0127502_10402535	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	697	Open in IMG/M
3300012198\|Ga0137364_11300483	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	541	Open in IMG/M
3300012203\|Ga0137399_10348819	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1229	Open in IMG/M
3300012203\|Ga0137399_10902667	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	744	Open in IMG/M
3300012361\|Ga0137360_11615152	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	553	Open in IMG/M
3300012362\|Ga0137361_11124555	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	707	Open in IMG/M
3300012396\|Ga0134057_1012032	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	503	Open in IMG/M
3300012397\|Ga0134056_1132617	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1152	Open in IMG/M
3300012469\|Ga0150984_112008367	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	609	Open in IMG/M
3300012685\|Ga0137397_10072699	All Organisms → cellular organisms → Bacteria	2491	Open in IMG/M
3300012918\|Ga0137396_10158916	All Organisms → cellular organisms → Bacteria	1649	Open in IMG/M
3300012929\|Ga0137404_10882486	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	815	Open in IMG/M
3300012971\|Ga0126369_10348174	All Organisms → cellular organisms → Bacteria	1503	Open in IMG/M
3300014265\|Ga0075314_1078944	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	685	Open in IMG/M
3300014884\|Ga0180104_1101775	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	818	Open in IMG/M
3300014885\|Ga0180063_1019307	All Organisms → cellular organisms → Bacteria	1856	Open in IMG/M
3300015054\|Ga0137420_1342434	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1126	Open in IMG/M
3300015264\|Ga0137403_10435687	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1187	Open in IMG/M
3300015371\|Ga0132258_11607852	All Organisms → cellular organisms → Bacteria	1640	Open in IMG/M
3300015372\|Ga0132256_101712453	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	738	Open in IMG/M
3300015374\|Ga0132255_103758200	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	645	Open in IMG/M
3300017659\|Ga0134083_10020265	All Organisms → cellular organisms → Bacteria → Proteobacteria	2340	Open in IMG/M
3300018468\|Ga0066662_10254659	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1438	Open in IMG/M
3300018468\|Ga0066662_12614233	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	533	Open in IMG/M
3300018482\|Ga0066669_10009117	All Organisms → cellular organisms → Bacteria	4928	Open in IMG/M
3300019458\|Ga0187892_10000079	All Organisms → cellular organisms → Bacteria	219117	Open in IMG/M
3300020067\|Ga0180109_1249480	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300022563\|Ga0212128_10084823	All Organisms → cellular organisms → Bacteria	2044	Open in IMG/M
3300024330\|Ga0137417_1065115	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1142	Open in IMG/M
3300025559\|Ga0210087_1095315	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	585	Open in IMG/M
3300025791\|Ga0210115_1038743	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1037	Open in IMG/M
3300025795\|Ga0210114_1009998	All Organisms → cellular organisms → Bacteria	2143	Open in IMG/M
3300026295\|Ga0209234_1002707	All Organisms → cellular organisms → Bacteria	6714	Open in IMG/M
3300026295\|Ga0209234_1064027	All Organisms → cellular organisms → Bacteria	1400	Open in IMG/M
3300026297\|Ga0209237_1001662	All Organisms → cellular organisms → Bacteria	13161	Open in IMG/M
3300026297\|Ga0209237_1077963	All Organisms → cellular organisms → Bacteria	1529	Open in IMG/M
3300026298\|Ga0209236_1018974	All Organisms → cellular organisms → Bacteria	3882	Open in IMG/M
3300026315\|Ga0209686_1013025	All Organisms → cellular organisms → Bacteria	3427	Open in IMG/M
3300026330\|Ga0209473_1078344	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1398	Open in IMG/M
3300026550\|Ga0209474_10631239	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	550	Open in IMG/M
3300026551\|Ga0209648_10009567	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	8398	Open in IMG/M
3300026552\|Ga0209577_10038303	All Organisms → cellular organisms → Bacteria	4122	Open in IMG/M
3300027614\|Ga0209970_1100363	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	553	Open in IMG/M
3300027643\|Ga0209076_1015649	All Organisms → cellular organisms → Bacteria	2010	Open in IMG/M
3300027643\|Ga0209076_1161324	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	625	Open in IMG/M
3300027671\|Ga0209588_1104277	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	912	Open in IMG/M
3300027682\|Ga0209971_1012295	All Organisms → cellular organisms → Bacteria	2025	Open in IMG/M
3300027765\|Ga0209073_10034689	All Organisms → cellular organisms → Bacteria	1585	Open in IMG/M
3300027765\|Ga0209073_10510903	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	508	Open in IMG/M
3300027787\|Ga0209074_10045754	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1319	Open in IMG/M
3300027873\|Ga0209814_10029133	All Organisms → cellular organisms → Bacteria	2268	Open in IMG/M
3300027873\|Ga0209814_10107091	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1188	Open in IMG/M
3300027873\|Ga0209814_10275143	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	731	Open in IMG/M
3300027909\|Ga0209382_10123927	All Organisms → cellular organisms → Bacteria	3012	Open in IMG/M
3300027909\|Ga0209382_11862163	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	583	Open in IMG/M
3300028809\|Ga0247824_10095099	All Organisms → cellular organisms → Bacteria	1565	Open in IMG/M
3300031548\|Ga0307408_100380170	All Organisms → cellular organisms → Bacteria	1207	Open in IMG/M
3300031731\|Ga0307405_11763120	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	550	Open in IMG/M
3300031820\|Ga0307473_10057448	All Organisms → cellular organisms → Bacteria	1881	Open in IMG/M
3300031820\|Ga0307473_10916777	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	634	Open in IMG/M
3300031903\|Ga0307407_11231356	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	585	Open in IMG/M
3300032002\|Ga0307416_100298542	All Organisms → cellular organisms → Bacteria	1599	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	72.79%
Host-Associated	Host-Associated	27.21%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	64.71%
Plants	Host-Associated → Plants	27.21%
Aquatic	Environmental → Aquatic	8.09%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	63.97%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.32%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.88%
Marine	Environmental → Aquatic → Marine	4.41%
Freshwater	Environmental → Aquatic → Freshwater	1.47%
Sediment	Environmental → Aquatic → Sediment	1.47%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.74%
Cave	Environmental → Terrestrial → Cave	0.74%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	19.85%
Loam	Environmental → Terrestrial → Soil → Loam	5.88%
Wetlands	Environmental → Aquatic → Marine → Wetlands	4.41%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.41%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.47%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.47%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.47%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.74%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.74%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.74%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.74%
Sand	Environmental → Terrestrial → Soil → Sand	0.74%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.74%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.53%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	23.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	19.85%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.35%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	4.41%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.41%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.21%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.21%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.47%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.47%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.47%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.47%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.47%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.74%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.74%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	0.74%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.74%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.74%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.74%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.74%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	16.91%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	15.44%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	14.71%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	8.82%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	4.41%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.41%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.68%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.68%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	3.68%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.94%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.21%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.21%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.47%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.47%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.47%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.47%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.47%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.47%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.74%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.74%
Thermal Springs	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs	0.74%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.74%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.74%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.74%
Bio-Ooze	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze	0.74%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.74%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.74%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.74%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm	Environmental	Open in IMG/M
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300003371	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM	Host-Associated	Open in IMG/M
3300003993	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2	Environmental	Open in IMG/M
3300003998	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D2	Environmental	Open in IMG/M
3300003999	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005985	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009817	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010119	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010133	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011333	Cornfield soil microbial communities from Stanford, California, USA - CI-CA-CRN metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012396	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012397	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014265	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailC_D2	Environmental	Open in IMG/M
3300014884	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_1Da	Environmental	Open in IMG/M
3300014885	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_10D	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019458	Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaG	Environmental	Open in IMG/M
3300020067	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT47_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022563	OV2_combined assembly	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025559	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025791	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025795	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D2 (SPAdes)	Environmental	Open in IMG/M
3300026295	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026315	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027614	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027682	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICCgaii200_04056212	2228664021	Soil	MAPALHPAPGMSTEPESTQPTPTGPVVHQFTVLRGMAVALVIETCDWYSGLLQAALARVRLEGQN
INPhiseqgaiiFebDRAFT_1055093661	3300000364	Soil	VASALHPDTSMNDPTPSEQTPERQVVHTFTVLRGMAIAIVIETRDWYSGLLQAAVARVRIEGLN*
JGI11643J11755_113925591	3300000787	Soil	MAPALHPAPGMSTEPESTQPTPTGPAVHQFTVLRGMAVALVIETCDWYSGLLQ
JGI10216J12902_1049731232	3300000956	Soil	MNDPTPSEQTPERQVVHTFTVLRGMAIAIVIETRDWYSGLLQAAVARVRIEGLN*
JGI25381J37097_10685622	3300002557	Grasslands Soil	VASALQPDTSMSTEPTPPEKTPEGQVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRIEGQN*
JGI25385J37094_101637361	3300002558	Grasslands Soil	MATEPAPSEKTPEGQVVHTFTVLRGMAVELVIETRDWYLGLLQAALARVRIEGQN*
JGI25384J37096_100086891	3300002561	Grasslands Soil	MATEPAPSEKTPEGQVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRIEGQN*
soilL2_100657101	3300003319	Sugarcane Root And Bulk Soil	VAPAPGMSAEPESTQPTPTGPVVHQFTVLRGMAVALVIETCDWYSGLLQAALAR
soilH2_103209781	3300003324	Sugarcane Root And Bulk Soil	VALALHPDTGMSTEPDPSQPPGTVVHTFTVLRGMAVALVIETCDWYSGLLQSALARVRLEGQN*
JGI26145J50221_10385811	3300003371	Arabidopsis Thaliana Rhizosphere	MAPALHPAPGMSTEPESTQPTPTGPAVHQFTVLRGMAVALVIETCDWYSGLLQAALARVRLEGQN*
Ga0055468_102781622	3300003993	Natural And Restored Wetlands	VSRRNCAETTVGPVAPALQPDTGMSTEPDSSAPTPTGPVVHQFTVLRGMAVALVIETRDWYSGLLQAALARVRLEGQN*
Ga0055472_101400642	3300003998	Natural And Restored Wetlands	VAPALQPDTGMSTEPDSSAPTPTGPVVHQFTVLRGMAVALVIETRDWYSGLLQAALARVRLEGQN*
Ga0055469_100050033	3300003999	Natural And Restored Wetlands	LQPDTGMSTEPDSSAPTPTGPVVHQFTVLRGMAVALVIETRDWYSGLLQAALARVRLEGQN*
Ga0063356_1026262282	3300004463	Arabidopsis Thaliana Rhizosphere	RKRAETTVGPVAPALQPDTGMSTEPDPSAPTPTGPVVHQFTVLRGMAVAIVIETSDWYSGLLHAALARVRLEGLN*
Ga0063356_1055181442	3300004463	Arabidopsis Thaliana Rhizosphere	MSTEPESTPPAPTGPVVHQFTVLRGMAVALVIETCDWYSGLLQAALARVRLEGQN*
Ga0062592_1002772641	3300004480	Soil	MSTEPESTQPTPTGPVVHQFTVLRGMAVALVIETCDWYSGLLQAALARVRLEGQN*
Ga0062591_1001971723	3300004643	Soil	MSTEPESSQPTPAGPAVHQFTVLRGMAVALVIETCDWYSGLLQAALARVRLEGQN*
Ga0066674_100440832	3300005166	Soil	VASALHRDTSMTDPMPWDKTPEGEVVHTFTVLRGMAIALVIETRDWYSGLLQAALARIRIEGQN*
Ga0066677_100542291	3300005171	Soil	MTDPMSWDKTPEGEVVHTFTVLRGMAIALVIETRDWYSGLLQAALARIRIEGQN*
Ga0066673_100138381	3300005175	Soil	VASALQPDTSMSTEPSPPEKTPEGQVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRIEGQN*
Ga0066679_100395674	3300005176	Soil	LQPDTSMSTEPTPPEKTPEGQVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRIEGQN*
Ga0066685_100188384	3300005180	Soil	MTDPMPWDKTPEGEVVHTFTVLRGMAIALVIETRDWYSGLLQAALARIRIEGQN*
Ga0066676_100402604	3300005186	Soil	MATEPAPSEKRPQGRPFHTFTVLRGMAVALVIETHDWYSGLLQAALARVRIE
Ga0066676_107189191	3300005186	Soil	LQPDTGMTDPTPSDETPEAQVVHTFTVLRGMAIALVIETRDWYSGLLQAAVARVRIEGQN
Ga0065707_107512012	3300005295	Switchgrass Rhizosphere	MRASVRKAAENTGRAMALALQSDTIMSTEPESAQPTPAGPVVHQFTVLRGMAVALVIETCDWYSGLLQAALARVRLEGQN*
Ga0066388_1070200722	3300005332	Tropical Forest Soil	MTDPTPSEQVPEGQVVHTFTVLRGMAIAIVIETRDWYSGLLQAAVARVRIEGLN*
Ga0070694_1005593381	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	PEGQVVHTFTVLRGMAVAIVIETRDWYSGLLQAAVARVRIEGLN*
Ga0070708_1005083351	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VASALQPDTGMSTEPAPPEKTPEGQVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRIEGQN*
Ga0070707_1001432351	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VASTLQPDTGMNEPTPSEQTPEGQVVHTFTVQRGMAVAIVIETRDWYSGLLQAAVARVRIEGLN*
Ga0066707_100388861	3300005556	Soil	PPEKTPEGQVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRIEGQN*
Ga0066698_101242571	3300005558	Soil	ALHRDTSMTDPMPWDKTPEGEVVHTFTVLRGMAIALVIETRDWYSGLLQAALARIRIEGQN*
Ga0066670_100895272	3300005560	Soil	MPWDKTPEGEVVHTFTVLRGMAIALVIETRDWYSGLLQAALARIRIEGQN*
Ga0066702_104905221	3300005575	Soil	MTDPMPWDKTPEGEVVHTFTVLRGMAIALVIETRDWYSGLLQAALARVRIEGQN*
Ga0066708_109107822	3300005576	Soil	VASALHFDTIMSDPPPSENLPEGQVVHTFTVLRGMAVALVIETCDWYSGLLQAALARVRIEGQN*
Ga0066905_1007888972	3300005713	Tropical Forest Soil	MNDPMPSEQTPEGQVVHTFTVLRGMAIAIVIETRDWYSGLLQAAVARVRIEGLN*
Ga0081539_10000069101	3300005985	Tabebuia Heterophylla Rhizosphere	MTEPATPDETPQAQPQAQDVHTFTVLRGMVVAIVIETRDWYSGLLQAALARVRIEGLN*
Ga0066656_100823671	3300006034	Soil	MPWDKTPEGEVVHTFTVLRGMAIALVIETRDWYSGLLQAALARVRIEGQN*
Ga0075417_100943412	3300006049	Populus Rhizosphere	MTEPAPPDETPQTQDVHTFTVLRGMVVAIVIETRDWYSGLLQAALARVRIDGMN*
Ga0075417_102347341	3300006049	Populus Rhizosphere	MNDPTPSEQTPEGQVVHTFTVLRGMAIAIVIETRDWYSGLLQAAVARVRIEGLN*
Ga0075417_103141342	3300006049	Populus Rhizosphere	MNDPTPSEQTPERQVVHTFTVLRGMAIAIVIETHDWYSGLLQAAVARVRIEGLN*
Ga0079222_100169464	3300006755	Agricultural Soil	VAFALHSDTGMSDPTPSSQPSPEGVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRIEGQN*
Ga0066658_101071051	3300006794	Soil	EPTPPEKTPEGQVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRIEGQN*
Ga0066660_100106782	3300006800	Soil	MSTEPSPPEKTPEGQVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRIEGQN*
Ga0079220_100242083	3300006806	Agricultural Soil	MSDPTPSSQPSPEGVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRIEGQN*
Ga0075421_1001465482	3300006845	Populus Rhizosphere	MSTEPESTQPAPTGPVVHQFTVLRGMSVAVVIETCDWYSGLLQAALARVRLEGQN*
Ga0075421_1001880722	3300006845	Populus Rhizosphere	MNDPMPSEQTPEGQVVHTFTVLRGMAIAIVIETRDWYSGLVQAAVARVRIEGLN*
Ga0075421_1004114042	3300006845	Populus Rhizosphere	VAPALHPYEGMSTEPDVPQPAPAAQPVVYQFTVLRGMATALVIETHDWYLGLLQAALARVRLEGQN*
Ga0075430_1006933031	3300006846	Populus Rhizosphere	VAPALHPYEGMSTEPDVPQPAPAAQPVVYQFTVLRGMATALVIETHDWYLGLLQAAHARVRLEGQN*
Ga0075434_1020636451	3300006871	Populus Rhizosphere	HPDTGMTDPTPPDQTPEGVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRIEGQN*
Ga0075429_1005709301	3300006880	Populus Rhizosphere	VASALHPDTSMNDPTPSEQTPERQVVHTFTVLRGMAIAIVIETHDWYSGLLQAAVARVRIEGLN*
Ga0075429_1008564712	3300006880	Populus Rhizosphere	MSTEPDVPQPAPAAQPVVYQFTVLRGMATALVIETHDWYLGLLQAALARVRLEGQN*
Ga0075426_104582233	3300006903	Populus Rhizosphere	VALALHPDTGMATEPTPSEKTPEGQVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRLEGKN*
Ga0075426_109308511	3300006903	Populus Rhizosphere	MDREISSPFPKDESLHTFKVQRGMAVAVVIETPDWYSGLLQSAFIRVRIEGQN*
Ga0079219_100053914	3300006954	Agricultural Soil	VAFTLQSDTGMSDPTPSSQPSPEGVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRIEGQN*
Ga0075419_113722161	3300006969	Populus Rhizosphere	MNDPTPSEQTPERQVVHTFTVLRGMAIAIVIETHDWYSGLLQAAVAR
Ga0099791_100093314	3300007255	Vadose Zone Soil	MSTEPAPPEKTPEGQVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRIEGQN*
Ga0099791_103950212	3300007255	Vadose Zone Soil	MATEPAPPEKTPEGQVVHTFTVLRGMAVALVIETRDWYSGLLQAALVRVRIEGQN*
Ga0099791_105896281	3300007255	Vadose Zone Soil	ETSMATEPAPSEKTPEGQVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRLEGKN*
Ga0099793_105884142	3300007258	Vadose Zone Soil	ALQPDTSMSTEPAPPEKTPEGQVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRIEGQN*
Ga0099794_101909182	3300007265	Vadose Zone Soil	MATEPTPSEKTPEGQVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRLEGKN*
Ga0075418_100263503	3300009100	Populus Rhizosphere	MSEPAPSEERPEEHTSDAQVVHTFTVLRGMAIALVIETRDWYSGLLQAALARVRIEGQN*
Ga0075418_102615462	3300009100	Populus Rhizosphere	MSTEPEPTQPESSEPIPPGPVVHQFTVLRGMAVALVIETCDWYSGLLQAALARVRLEGQN
Ga0099792_105702681	3300009143	Vadose Zone Soil	ASALQPDTSMSTEPAPPEKTPEGQVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRIEGQN*
Ga0114129_103226193	3300009147	Populus Rhizosphere	GMSTEPESTQPTPTGPAVHQFTVLRGMAVALVIETCDWYSGLLQAALARVRLEGQN*
Ga0075423_114086601	3300009162	Populus Rhizosphere	MSTEPESPQPTPAGPVVHQFTVLRGMAVALVIETCDWYSGLLQAALARVRLEGQN*
Ga0075423_123149822	3300009162	Populus Rhizosphere	TDPTPSDKTPEGEVVHTFTVLRGMAIALVIETRDWYSGLLQAALARVRIEGQN*
Ga0105062_10781521	3300009817	Groundwater Sand	VASALQRDTGMATEPTPSEKTPEGQVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRIEGKN*
Ga0126384_105851122	3300010046	Tropical Forest Soil	MSDPTPSEQVPEGQVVHTFTVLRGMAIAIVIETRDWYSGLLQAAVARVRIEGLN*
Ga0126384_106327401	3300010046	Tropical Forest Soil	VASALHPDTTMNDPTPPDQTPERQVVHTFTVLRGMAIAIVIETHDWYSGLLQAAVARVRIEGLN*
Ga0126373_127999151	3300010048	Tropical Forest Soil	MNDPTPSEQTPERQVVHTFTVLRGMAIAIVIETRDWYSGLLQAAVAR
Ga0127452_11032811	3300010119	Grasslands Soil	VASALQPDTGMTDPTPSDETPEAQVVHTFTVLRGMAIALVIETRDWYSGLLQAAVARVRIEGQN*
Ga0127459_10621791	3300010133	Grasslands Soil	LRVASALQPDTGMTDPTPSDETPEAQVVHTFTVLRGMAIALVIETRDWYSGLLQAAVARVRIEGQN*
Ga0126372_100702322	3300010360	Tropical Forest Soil	MNDPTPSEQTPERQVVHTFTVLRGMAIAIVIETRDWYSGLLQAAVARVRIEGMN*
Ga0137392_105396542	3300011269	Vadose Zone Soil	MSSEPAPPEKTPEGQVVHTFTVLRGMAVALVIETRDWYSGRLQAALARVRIEGQN*
Ga0127502_104025352	3300011333	Soil	MSTEPDSSAPTPTGPVVHQFTVLRGMAVALVIETRDWYSGLLQAALARVRLEGQN*
Ga0137364_113004831	3300012198	Vadose Zone Soil	GVASALHRDTSMTDPMPWDKTPEGEVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRIEGQN*
Ga0137399_103488193	3300012203	Vadose Zone Soil	MSTEPAPPEKTPEGQVVHTFTVLRGMAIALVIETRDWYSGLLQAALARVRIEGQN*
Ga0137399_109026673	3300012203	Vadose Zone Soil	MATEPAPPEKTPEGQVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRLEGKN*
Ga0137360_116151521	3300012361	Vadose Zone Soil	MATEPAPSEKTPAGQAVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRIEGSEVGGSCGGRG
Ga0137361_111245552	3300012362	Vadose Zone Soil	MSTEPTPPEKTPEGQVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRIEGQN*
Ga0134057_10120321	3300012396	Grasslands Soil	SALQPDTGMTDPTPSDETPEAQVVHTFTVLRGMAIALVIETRDWYSGLLQAAVARVRIEGQN*
Ga0134056_11326172	3300012397	Grasslands Soil	VASALQPDTGMTDPTPSDETPEAQVVHTFTVLRGMAVALVIETRDWYSGLLQAAVARVRIEGQN*
Ga0150984_1120083671	3300012469	Avena Fatua Rhizosphere	MSTEPESTPPTPTGPVVHQFTVLRGMAVALVIETCDWYSGLLQAALARVRLEGQN*
Ga0137397_100726993	3300012685	Vadose Zone Soil	MATEPAPPEKTPEGQVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRIEGQN*
Ga0137396_101589161	3300012918	Vadose Zone Soil	MATEPAPSEKTPEGQVVHTFTVLRGMAIALVIETRDWYSGLLQAALARVRIEGRN*
Ga0137404_108824861	3300012929	Vadose Zone Soil	VASALQPDTGMTDPTPSDETPEAQVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVQIEGQN*
Ga0126369_103481742	3300012971	Tropical Forest Soil	MAFALHPDTGMSDPTPSEQVPEGQVVHTFTVLRGMAIAIVIETRDWYSGLLQAAVARVRIEGLN*
Ga0075314_10789441	3300014265	Natural And Restored Wetlands	MSTEPDSSAPTPTGPVVHQFTVLRVMAVALLIETRDWYSGLLQAALARVRLEGQN*
Ga0180104_11017752	3300014884	Soil	MSTEPEPFQPTPAGPVVHQFTVLRGMAVALVIETCDWYSGLLQAALARVRLEGQN*
Ga0180063_10193071	3300014885	Soil	MSTEPESFQPTPAGPVVHQFTVLRGMAVALVIETCDWYSGLLQAALARVRLEGQN*
Ga0137420_13424341	3300015054	Vadose Zone Soil	MSTEPAPPEKTPEGQVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRIE
Ga0137403_104356873	3300015264	Vadose Zone Soil	VASALQPDTGMTDPTPSDETPEAQVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVQIEGQI*
Ga0132258_116078522	3300015371	Arabidopsis Rhizosphere	LNFGVALALQSDTGMSTEPDPAQPPGTVVHTFTVLRGMAVALVIETSDWYSGLLQSALARVRLDGQN*
Ga0132256_1017124531	3300015372	Arabidopsis Rhizosphere	MNDPQPSDNGPEGQSVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRIEGQN*
Ga0132255_1037582001	3300015374	Arabidopsis Rhizosphere	MNDPQPSDNGPEGQIVHTFPVLRGMAVALVIEPRDWYSGLLQSALARVRI
Ga0134083_100202651	3300017659	Grasslands Soil	PSDETPEAQVVHTFTVLRGMAIALVIETRDWYSGLLQAAVARVRIEGQN
Ga0066662_102546592	3300018468	Grasslands Soil	MTDPMPWDKTPEGEVVHTFTVLRGMAIALVIETRDWYSGLLQAALARIRIEGQN
Ga0066662_126142331	3300018468	Grasslands Soil	VASALQPDTSMSTEPTPPEKTPEGQVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRIEGQN
Ga0066669_100091174	3300018482	Grasslands Soil	MPWDKTPEGEVVHTFTVLRGMAIALVIETRDWYSGLLQAALARIRIEGQN
Ga0187892_1000007910	3300019458	Bio-Ooze	MPPEPDWPIEDPPGVVMHRFTVNRGMMIAFVIETTDWYWGLLQAAAARVRIEGLN
Ga0180109_12494802	3300020067	Groundwater Sediment	VAPALQSDTGMSTEPEPFQPTPAGPVVHQFTVLRGMAVALVIETCDWYSGLLQAALARVRLEGQN
Ga0212128_100848231	3300022563	Thermal Springs	VAPLLQFDTGMQPDPNQPGETAPQAIVHQFTVLRGMAVALVIETRDWYAGLLQAALARVRLEGLN
Ga0137417_10651152	3300024330	Vadose Zone Soil	VASALQPDTSMSTEPAPPEKTPEGQVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRIEGQN
Ga0210087_10953152	3300025559	Natural And Restored Wetlands	VSRRNCAETTVGPVAPALQPDTGMSTEPDSSAPTPTGPVVHQFTVLRGMAVALVIETRDW
Ga0210115_10387431	3300025791	Natural And Restored Wetlands	VSRRNCAETTVGPVAPALQPDTGMSTEPDSSAPTPTGPVVHQFTVLRGMAVALVIETRDWYSGLLQAALARVR
Ga0210114_10099983	3300025795	Natural And Restored Wetlands	MSTEPDSSAPTPTGPVVHQFTVLRGMAVALVIETRDWYSGLLQAALARVRLEGQN
Ga0209234_10027075	3300026295	Grasslands Soil	MSTEPTPPEKTPEGQVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRIEGQN
Ga0209234_10640271	3300026295	Grasslands Soil	TSMTDPMPWDKTPEGEVVHTFTVLRGMAIALVIETRDWYSGLLQAALARIRIEGQN
Ga0209237_100166215	3300026297	Grasslands Soil	MATEPAPSEKTPEGQVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRIEGQN
Ga0209237_10779631	3300026297	Grasslands Soil	MSTEPTPSEQTPEGQVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRLEG
Ga0209236_10189742	3300026298	Grasslands Soil	MATEPAPSEKTPEGQVVHTFTVLRGMAVELVIETRDWYLGLLQAALARVRIEGQN
Ga0209686_10130252	3300026315	Soil	MSWDKTPEGEVVHTFTVLRGMAIALVIETRDWYSGLLQAALARIRIEGQN
Ga0209473_10783442	3300026330	Soil	MTDPMSWDKTPEGEVVHTFTVLRGMAIALVIETRDWYSGLLQAALARIRIEGQN
Ga0209474_106312391	3300026550	Soil	VASALHRDTSMTDPMPWDKTPEGEVVHTFTVLRGMAIALVIETRDWYSGLLQAALARVRIEGQN
Ga0209648_1000956710	3300026551	Grasslands Soil	MSTEPVPPEKSPEGQVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRIEGKN
Ga0209577_100383037	3300026552	Soil	MSTEPSPPEKTPEGQVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRIEGQN
Ga0209970_11003631	3300027614	Arabidopsis Thaliana Rhizosphere	MAPALHPAPGMSTEPESTQPTPTGPAVHQFTVLRGMAVALVIETCDWYSGLLQAALARVRLEGQN
Ga0209076_10156494	3300027643	Vadose Zone Soil	MSTEPAPPEKTPEGQVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRI
Ga0209076_11613242	3300027643	Vadose Zone Soil	STEPAPPEKTPEGQVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRIEGQN
Ga0209588_11042772	3300027671	Vadose Zone Soil	MATEPTPSEKTPEGQVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVR
Ga0209971_10122951	3300027682	Arabidopsis Thaliana Rhizosphere	MSTEPESTQPTPTGPVVHQFTVLRGMAVALVIETCDWYSGLLQAALARVRLEGQN
Ga0209073_100346893	3300027765	Agricultural Soil	PSSQPSPEGVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRIEGQN
Ga0209073_105109032	3300027765	Agricultural Soil	MSTEPTRSESDGQVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRIEGQN
Ga0209074_100457542	3300027787	Agricultural Soil	MSDPTPSSQPSPEGVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRIEGQN
Ga0209814_100291332	3300027873	Populus Rhizosphere	MTEPAPPDETPQTQDVHTFTVLRGMVVAIVIETRDWYSGLLQAALARVRIDGMN
Ga0209814_101070912	3300027873	Populus Rhizosphere	MNDPTPSEQTPEGQVVHTFTVLRGMAIAIVIETRDWYSGLLQAAVARVRIEGLN
Ga0209814_102751431	3300027873	Populus Rhizosphere	LHPDTSMNDPTPSEQTPERQVVHTFTVLRGMAIAIVIETHDWYSGLLQAAVARVRIEGLN
Ga0209382_101239274	3300027909	Populus Rhizosphere	MSTEPESTQPAPTGPVVHQFTVLRGMSVAVVIETCDWYSGLLQAALARVRLEGQN
Ga0209382_118621632	3300027909	Populus Rhizosphere	MNDPMPSEQTPEGQVVHTFTVLRGMAIAIVIETRDWYSGLVQAAVARVRIEGLN
Ga0247824_100950992	3300028809	Soil	MALALQSDTIMSTEPESAQPTPAGPVVHQFTVLRGMAVALVIETCDWYSGLLQAALARVRLEGQN
Ga0307408_1003801702	3300031548	Rhizosphere	RVAPARGMSTEPESTQPTPTGPVVHQFTVLRGMAVALVIETCDWYSGLLQAALARVRLEGQN
Ga0307405_117631201	3300031731	Rhizosphere	MAPALHPELGMSTEPESTQPTPTGPVVHQFTVLRGMAVALVIETCDWYSGLLQAALARVRLEGQT
Ga0307473_100574483	3300031820	Hardwood Forest Soil	VASALQPDTGMSTEPAPPEKTPEGQVVHTFTVLRGMAVALVIETRDWYSGLLQAALARVRIEGLN
Ga0307473_109167771	3300031820	Hardwood Forest Soil	LQSDTGMNEPTPSEQTPDGQVVHTFTVLRGMAVAIVIETRDWYSGLLQAAVARVRIEGLN
Ga0307407_112313561	3300031903	Rhizosphere	MSTEPESTQPTPTGPVVLQFTVLRGMAVALVIETCDWYSGLLQAALARVRLEGQN
Ga0307416_1002985423	3300032002	Rhizosphere	MSTEPESSQPAPAGPVVHQFTVLRGMAVALVIETCDWYSGLLQAALARVRLEGQN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F057278

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences