NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F057530

Metagenome / Metatranscriptome Family F057530

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F057530
Family Type Metagenome / Metatranscriptome
Number of Sequences 136
Average Sequence Length 45 residues
Representative Sequence MTTQTIPEYLEEERQKASDTQLRTEEEAARIQPLRHGHHRTA
Number of Associated Samples 113
Number of Associated Scaffolds 136

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 5.88 %
% of genes from short scaffolds (< 2000 bps) 5.88 %
Associated GOLD sequencing projects 107
AlphaFold2 3D model prediction Yes
3D model pTM-score0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (94.853 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland
(15.441 % of family members)
Environment Ontology (ENVO) Unclassified
(44.853 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(54.412 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 42.86%    β-sheet: 0.00%    Coil/Unstructured: 57.14%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.41
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 136 Family Scaffolds
PF05239PRC 6.62
PF01594AI-2E_transport 3.68
PF04366Ysc84 2.94
PF11645PDDEXK_5 2.21
PF05532CsbD 1.47
PF16576HlyD_D23 1.47
PF00990GGDEF 1.47
PF12836HHH_3 1.47
PF14690zf-ISL3 0.74
PF03795YCII 0.74
PF01979Amidohydro_1 0.74
PF01741MscL 0.74
PF13545HTH_Crp_2 0.74
PF13620CarboxypepD_reg 0.74
PF00589Phage_integrase 0.74
PF12706Lactamase_B_2 0.74
PF03069FmdA_AmdA 0.74
PF05988DUF899 0.74
PF01381HTH_3 0.74
PF06745ATPase 0.74
PF14534DUF4440 0.74
PF13358DDE_3 0.74
PF00689Cation_ATPase_C 0.74
PF04397LytTR 0.74
PF00702Hydrolase 0.74

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 136 Family Scaffolds
COG0628Predicted PurR-regulated permease PerMGeneral function prediction only [R] 3.68
COG2930Lipid-binding SYLF domain, Ysc84/FYVE familyLipid transport and metabolism [I] 2.94
COG3237Uncharacterized conserved protein YjbJ, UPF0337 familyFunction unknown [S] 1.47
COG0474Magnesium-transporting ATPase (P-type)Inorganic ion transport and metabolism [P] 0.74
COG1970Large-conductance mechanosensitive channelCell wall/membrane/envelope biogenesis [M] 0.74
COG2350YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHisSecondary metabolites biosynthesis, transport and catabolism [Q] 0.74
COG2421Acetamidase/formamidaseEnergy production and conversion [C] 0.74
COG4312Predicted dithiol-disulfide oxidoreductase, DUF899 familyGeneral function prediction only [R] 0.74


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A94.85 %
All OrganismsrootAll Organisms5.15 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300009029|Ga0066793_10497949All Organisms → cellular organisms → Bacteria697Open in IMG/M
3300014159|Ga0181530_10322232Not Available805Open in IMG/M
3300016750|Ga0181505_10236757All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium918Open in IMG/M
3300021170|Ga0210400_10612219Not Available898Open in IMG/M
3300027570|Ga0208043_1033982All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1558Open in IMG/M
3300027641|Ga0208827_1176114All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium580Open in IMG/M
3300027908|Ga0209006_10154165All Organisms → cellular organisms → Bacteria → Acidobacteria2015Open in IMG/M
3300028069|Ga0255358_1042891All Organisms → cellular organisms → Bacteria641Open in IMG/M
3300032160|Ga0311301_10853854All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis → Candidatus Koribacter versatilis Ellin3451237Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland15.44%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland8.09%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil7.35%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa6.62%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil5.88%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil5.88%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil5.88%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog5.15%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog5.15%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil4.41%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.68%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil2.94%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost2.94%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen2.94%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil2.21%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil2.21%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere2.21%
PalsaEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa1.47%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.74%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.74%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.74%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil0.74%
Permafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil0.74%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog0.74%
Prmafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil0.74%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.74%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.74%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere0.74%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.74%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.74%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.74%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000955Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300004091Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300005290Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1Host-AssociatedOpen in IMG/M
3300005457Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaGHost-AssociatedOpen in IMG/M
3300005994Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049EnvironmentalOpen in IMG/M
3300006059Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012EnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006642Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-DEnvironmentalOpen in IMG/M
3300006795Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-BEnvironmentalOpen in IMG/M
3300006864Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 3 DNA2013-193EnvironmentalOpen in IMG/M
3300009029Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189EnvironmentalOpen in IMG/M
3300009521Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaGEnvironmentalOpen in IMG/M
3300009523Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaGEnvironmentalOpen in IMG/M
3300009524Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaGEnvironmentalOpen in IMG/M
3300009616Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100EnvironmentalOpen in IMG/M
3300009621Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_150EnvironmentalOpen in IMG/M
3300009624Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10EnvironmentalOpen in IMG/M
3300009637Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40EnvironmentalOpen in IMG/M
3300009639Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_40EnvironmentalOpen in IMG/M
3300009651Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-063EnvironmentalOpen in IMG/M
3300009760Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_100EnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300014158Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaGEnvironmentalOpen in IMG/M
3300014159Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaGEnvironmentalOpen in IMG/M
3300014164Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaGEnvironmentalOpen in IMG/M
3300014165Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaGEnvironmentalOpen in IMG/M
3300014489Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaGEnvironmentalOpen in IMG/M
3300014495Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaGEnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014654Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaGEnvironmentalOpen in IMG/M
3300014745Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaGHost-AssociatedOpen in IMG/M
3300014838Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300016750Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017925Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40EnvironmentalOpen in IMG/M
3300017938Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150EnvironmentalOpen in IMG/M
3300017948Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10EnvironmentalOpen in IMG/M
3300018003Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_40EnvironmentalOpen in IMG/M
3300018004Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_100EnvironmentalOpen in IMG/M
3300018016Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40EnvironmentalOpen in IMG/M
3300018035Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10EnvironmentalOpen in IMG/M
3300018038Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10EnvironmentalOpen in IMG/M
3300018042Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10EnvironmentalOpen in IMG/M
3300018043Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10EnvironmentalOpen in IMG/M
3300018044Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10EnvironmentalOpen in IMG/M
3300018046Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10EnvironmentalOpen in IMG/M
3300018047Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10EnvironmentalOpen in IMG/M
3300018057Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150EnvironmentalOpen in IMG/M
3300019258Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021402Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-OEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300022730Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU2Host-AssociatedOpen in IMG/M
3300022873Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 10-14EnvironmentalOpen in IMG/M
3300023250Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 10-14EnvironmentalOpen in IMG/M
3300025412Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10 (SPAdes)EnvironmentalOpen in IMG/M
3300025460Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150 (SPAdes)EnvironmentalOpen in IMG/M
3300025473Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10 (SPAdes)EnvironmentalOpen in IMG/M
3300025481Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-092012 (SPAdes)EnvironmentalOpen in IMG/M
3300025484Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 deep-092012 (SPAdes)EnvironmentalOpen in IMG/M
3300025500Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40 (SPAdes)EnvironmentalOpen in IMG/M
3300025527Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 shallow-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300025581Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 deep-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300025878Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D (SPAdes)EnvironmentalOpen in IMG/M
3300025921Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026291Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)EnvironmentalOpen in IMG/M
3300027334Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027570Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027641Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027667Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027824Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)EnvironmentalOpen in IMG/M
3300027825Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027855Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)EnvironmentalOpen in IMG/M
3300027879Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)EnvironmentalOpen in IMG/M
3300027884Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)EnvironmentalOpen in IMG/M
3300027908Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300028069Peat soil microbial communities from Stordalen Mire, Sweden - G.F.S.T0EnvironmentalOpen in IMG/M
3300028759Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1EnvironmentalOpen in IMG/M
3300028780Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2EnvironmentalOpen in IMG/M
3300028798Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2EnvironmentalOpen in IMG/M
3300028800Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaGHost-AssociatedOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300029882III_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300029883I_Bog_E2 coassemblyEnvironmentalOpen in IMG/M
3300029914III_Bog_E2 coassemblyEnvironmentalOpen in IMG/M
3300029917I_Bog_E1 coassemblyEnvironmentalOpen in IMG/M
3300029922III_Fen_E1 coassemblyEnvironmentalOpen in IMG/M
3300029939I_Bog_E3 coassemblyEnvironmentalOpen in IMG/M
3300029943I_Palsa_N3 coassemblyEnvironmentalOpen in IMG/M
3300029984I_Fen_E1 coassemblyEnvironmentalOpen in IMG/M
3300030002II_Fen_N1 coassemblyEnvironmentalOpen in IMG/M
3300030339III_Bog_N1 coassemblyEnvironmentalOpen in IMG/M
3300030507Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_2EnvironmentalOpen in IMG/M
3300030580II_Palsa_N1 coassemblyEnvironmentalOpen in IMG/M
3300030618II_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030741Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assemblyEnvironmentalOpen in IMG/M
3300030862Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030906Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3EnvironmentalOpen in IMG/M
3300030940Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030943III_Fen_N2 coassemblyEnvironmentalOpen in IMG/M
3300031010Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031040Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE6 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031344Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaGHost-AssociatedOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300034163Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI1027J12803_10957253713300000955SoilMTTKTIPAYLDDEHQKGRDTQLRTEEEAARIHPLRHGHHRTAK
JGI12635J15846_1055058023300001593Forest SoilMTTKTIPEYLEDERQKGTDAQQSMEEEAARIQPLN
JGI12635J15846_1089923123300001593Forest SoilMATKTIPEYLEDERRNRADTELRTEEEAAHIQALHHGHHRT
JGIcombinedJ26739_10000703513300002245Forest SoilMTTQTIPEYLEEERQKTAETRLRTEKEAARIEPLQHGHHRNAKQSKPELELV
JGIcombinedJ26739_10057853823300002245Forest SoilMTTKTIPMYLEDERRKRTGAELRLAEEGARIQPLHH
Ga0062387_10100794423300004091Bog Forest SoilMTTKTIPEYLEDERRKLTEAQLRTEEEAARIQALHPAHRRT
Ga0065712_1009297733300005290Miscanthus RhizosphereMTTKTIPEYLEDERQKERDAQLRREEETDRIQLLKHGHHRTMKQPKL
Ga0070662_10178496013300005457Corn RhizosphereMTTKTIPEYLEDERQKERDAQLRREEETDRIQLLKHGHHRTMKQ
Ga0066789_1004384433300005994SoilMTTKTIPEYLEDERQKDTDAQLRMDEESARIQPLNHGHHRTAK*
Ga0075017_10022496613300006059WatershedsMTTKTIPAYLEDERQKGRDTQQRIEADAARIQPLHRGHHRTARQPKLEL
Ga0070765_10071322813300006176SoilMTTKTIPEYLEDERRKLTEAQLRTEEEAARIQALHRAHVALPNSPR*
Ga0075521_1034591013300006642Arctic Peat SoilMATKTIPEYLEDERRSREETQLRTDEEADRIQLLHQGHHRTRKQPN
Ga0075521_1067796623300006642Arctic Peat SoilMATKTIPEYLEDERRNRADTELRTEEEAAHIQALHNGHHRTRKPPKPELL
Ga0075520_121125323300006795Arctic Peat SoilMTTKTIPEYLADERRSLEDTTLRTENEAALIQSLHPGHHRTRKSPELES
Ga0066797_121241513300006864SoilMTTKTIPAYLEDERQKGRDTQLRMEAEAARIQPLQHGHHRIAKQPK
Ga0066793_1049794913300009029Prmafrost SoilMTTKTIPAYLEDERQKDCDAQLRMEEEAARIQQLNHGHHRTAKQPERELPSVV
Ga0116222_103126533300009521Peatlands SoilMTTKTIPAYLEDERQKSKDALLRMEAEGARIQPLRHGHSRRTISNVE*
Ga0116221_116864713300009523Peatlands SoilMTAQTIPEYLEEERKKQQTLSHERKKEAARIHPLQHGHHRTAKQPK
Ga0116225_122347013300009524Peatlands SoilMTTKTIPEYLEDERQKRSDDQLRIGEEAARIQPLHHGHHRTAKQP
Ga0116225_136671113300009524Peatlands SoilMTAQTIPEYLEEERQKTTDIQLRTEEEAARIQPLQHGRHRKAKQPRL
Ga0116111_112868213300009616PeatlandMTTKTIPEYLEDERQKRSDDQLRIGEEAARIQPLHHGHHRTAKQPKLELPPAVEAA
Ga0116116_104211833300009621PeatlandMTTKTIPAYLEDERRKRGDDQVRIEEEAARIQLLHHSHHRTAKQPKLELLS
Ga0116105_124487013300009624PeatlandMTTQTIPEYLEEERQKAADTQLRTEEEAARIQPLQ
Ga0116118_127051813300009637PeatlandMTTKTIPAYLEDERRKLGDAQLRVEEEAARTQPLHHGHHRTAKQPKLELPAPAEA
Ga0116122_118742923300009639PeatlandMTTKTIPEYLEDERQKSKDDQLRMEAEAARIQPLHHGHHRTAKQP
Ga0105859_126314013300009651Permafrost SoilMTTKTIPEYLEDERRSREDTQLRTDEEADRIQLLHPGHHRTRKQ
Ga0116131_103379313300009760PeatlandMTTKTIPAYLEDERQKNRDAQLRIEAEAARIRPLRHGHHRNAKQPQLE
Ga0116131_123145013300009760PeatlandMTTKTIPAYLEDERQKDCDAQLRMEAEAARIQPLNHGHHRTAKQPKQEL
Ga0134125_1080369013300010371Terrestrial SoilMTTKTIPEYLEDERQKERDAQLRREEETDRIQLLKHGHHRTMKQPKLELQSSTKAAPKAR
Ga0150983_1125629023300011120Forest SoilMTTKTISAYLEDERQKGRDAQLRTQEEAARIQPLHHGHHRTAK
Ga0181521_1017558313300014158BogMTTKTIPEYLEDERHKSKDDQLRIEEEAVRIRPLHHGHHRTAKQPKLELRSPV
Ga0181530_1032223213300014159BogMTTKTIPAYLEDERRKHGDDQLRMEEEAARILPLHHGRH
Ga0181532_1001243463300014164BogMTTKTIPEYLEDERHKSKDDQLRIEEEAARIQPLHHGHHRTAKQPKLELRSPVEAAG
Ga0181523_1009529243300014165BogMATKTIPEYLEDERRNRADTELRTEEEAAHIQSLNHGHHRTPKPPRPELVVPV
Ga0181523_1034683023300014165BogMTTKTIPAYLEDERRKRRDAQRRMEEEAARIQPLHHGHHR
Ga0181523_1056932013300014165BogMTTKTISAYLEGERQKEDRDTQLRMEEEAARIQPLNHGHHRAGKQPKLELPAA
Ga0182018_1016091013300014489PalsaMTTKTIPEYLEDERQKDCDAQLRMETEAARIQPLNHGHHRTAKQPK
Ga0182015_1003603623300014495PalsaMTTKTIPAYLEDERKKDKDAQQRIQEEAARIQPLHHGHHRAAKQPK
Ga0182024_1014198863300014501PermafrostMTAQTIPEYLEEERQKAAETQTRTEEEAARIQPLQHGHHR
Ga0182024_1122847023300014501PermafrostMTIQTIPEYLEEERQKAADTQLRTEEEAARIQPLHHGHHRKAK
Ga0182024_1162841013300014501PermafrostMTTKTIPAYLEDERQKDCDAQLRMEEEAARIQPLNHGHHRTAKQPKLE
Ga0182024_1211727813300014501PermafrostMTVQTIPEYLEEERQKAADTQLRTEEEAARIQPLHHGHHRKAK
Ga0181525_1046618213300014654BogMSSQTIAEYLDEERQKYAANQLRVDEEAARIQPLQHGHHRAGNQPKLELVPAIKS
Ga0157377_1064656423300014745Miscanthus RhizosphereMTTKTIPEYLEDERQKERDAQLRREEETDRIQLLKHGHHRTMKQPKLELQS
Ga0182030_1018210023300014838BogMTTKTIPEYLEDERREDTDTQRRKEEEAARNLALHHGTHHTPKPAQTELSEL*
Ga0132258_1346928213300015371Arabidopsis RhizosphereMTTKTIPAYLEDDRQKGRDAQLRMEEEAARIQSRHHGHHRT
Ga0181505_1023675723300016750PeatlandMTTKTIPAYLEDERRKHGDDQLRMEEEAARILPLHHGRHRTAKQPQLEL
Ga0187856_100665863300017925PeatlandMTTKTIPEYLEDERQKRSDDQLRIGEEAARIQPLHHGHHR
Ga0187854_1031292923300017938PeatlandMTTKTIPEYLEDERQKSKDDQLRMEAEAARIQPLHH
Ga0187847_1020620223300017948PeatlandMATKTIPEYLEDERRNRVDTELRAEEEAAHIQSLTHGHH
Ga0187876_100618653300018003PeatlandMTTKTIPEYLEDERQKRSDDQLRIGEEAARIQPLHHGHHRTAKQPKLEL
Ga0187865_120908023300018004PeatlandMAMATKTIPEYLEDERRNRADTELRTEEEAARIQP
Ga0187880_127630323300018016PeatlandMAMATKTIPEYLEDERRNRADTELRTEEEAARIQSLPHG
Ga0187875_1045858413300018035PeatlandMTTKTIPEYLEDERREDTDTQRRREEEAARIQALHHSQHRTPKPPRPELPA
Ga0187855_1015000213300018038PeatlandMTTQTIKEYLDEEREKASETQLRTEEEAARIQPLQHGHH
Ga0187855_1034634823300018038PeatlandMTTKTISAYLEDERQKDRDAQLRAEEEATRIQPLHHGHHRTAKQPKREL
Ga0187871_1047271213300018042PeatlandMTVQTIPKYLEEERQKAVDTQLRTEEEAARIQPLH
Ga0187887_1026146923300018043PeatlandMTTQTIKEYLDEEREKASETQLRTEEEAARIQPLQHGHHR
Ga0187887_1030987223300018043PeatlandMFCHTPAMTTKTIPEYLEDERQKNSATQLRTEDDAARNLALH
Ga0187887_1068220823300018043PeatlandMTTKTIPAYLENERRKDCDAQLRMEAEAARIKPLNHGHHRTAKQPKRELLSLA
Ga0187890_1013160543300018044PeatlandMATKTIPEYLEDERRSSEDTQLRTDEEADRIQLLHQGHHRTRKQPKPE
Ga0187890_1077669223300018044PeatlandMTTKTIPAYLEDERQKNRDAQLRMEAEAARIRPLRHGHHRNAK
Ga0187890_1087539413300018044PeatlandMTTRTIRAYLEDERQKDYDARLRMEAEAARLQPLNHGHHRTAKQPV
Ga0187851_1013172113300018046PeatlandMTTQTIKEYLDEEREKASETQLRTEEEAARIQPLQHGHHRMAKQPE
Ga0187859_1017802713300018047PeatlandMTTHTIKEYLDEEREKASETQLRTEEEAARIQPLQHGHHR
Ga0187858_1033296523300018057PeatlandMTAQTIPEYLEEERQKAADTQLRTEEEAARIQALQHGRRRKA
Ga0181504_143345813300019258PeatlandMSSQTIAEYLDEERQKYAANQLRVDEEAARIQPLQ
Ga0210395_1003701943300020582SoilMTTKTIPEYLEDERRKLTEAQLRTEEEAARIQALHPAH
Ga0210401_1161475913300020583SoilMSTKTISSYLEDERKRCRDTQLRVEEEAARIQPLNHGHHRTARQPK
Ga0210400_1061221913300021170SoilMTTKTISAYLEDERRKGRDTQVRVEEEAARTQLLNHGRHRTAKQPKRDLPAV
Ga0210388_1164619923300021181SoilMSTQTIAEYLDEERQKYAANQLRVDEEAARIQPLQHGHHRAAKQPKLELLRPAK
Ga0210393_1130897413300021401SoilMTVQTIPEYLEEERQKTADTELRTEEEAARIQPLQHGHHRKAKQP
Ga0210385_1117705113300021402SoilMSTQTIAEYLDEERQKYVANQLRVDEEAARIRPLQHGHHRAGNRPKL
Ga0210410_1122830223300021479SoilMTTKTIPEYLEEERQKARDTQLRTAEEAARIQPLNHGHHRTSKQSKREL
Ga0224570_10650613300022730RhizosphereMTTQTIPEYLEEERQKTAATQLRTEKEAARIEPLQHGHHRNAKPSKLELELV
Ga0224550_102445713300022873SoilMTTQTIAEYLEEERQKAADTQLRTEEEAARIQPLQHGHHR
Ga0224544_100495013300023250SoilMTTQTIPEYLEEERQKAADTQLRTQEEAARIQPLQHCHHRTAKQ
Ga0208194_105474113300025412PeatlandMTLHTIPEYLEEERQKAEDTQVRTEEEAARIQPLRHGHHRQAKQP
Ga0208562_106569813300025460PeatlandMTTKTIPEYLEDERQKRSDDQLRIGEEAARIQPLHHGHHRTAKQPKL
Ga0208190_102928013300025473PeatlandMTTQTIKEYLDEEREKASETQLRTEEEAARIQPLQHGH
Ga0208079_101727813300025481Arctic Peat SoilMTTKTIPEYLEDERRNRADTQLRTEEEAARIQPLHHGHHRTPKPP
Ga0208587_101873133300025484Arctic Peat SoilMTTRTIPEYLEDEHRKLRNAQLRIEEEAARIQPLHHG
Ga0208686_104217613300025500PeatlandMAMATKTIPEYLEDERRNRADTELRTEEEAARIQSLHHGHHRTQKPPKLE
Ga0208714_104435413300025527Arctic Peat SoilMAMATKTIPEYLEDERRNSADTQLRTEEEAARIQPLNHGHHRTRKPPKLELP
Ga0208355_102429633300025581Arctic Peat SoilMATKTIPEYLEDERRSREDTQLRTDEEADRIQLLHPGHHRTRKQ
Ga0209584_1034090613300025878Arctic Peat SoilMATKTIPEYLEDERRSREDTQLRTDEEADRIQLLHQGHH
Ga0207652_1188490413300025921Corn RhizosphereMTTKAIPEYLEDERQKGRDAQQSIEEEAARIQPLNHGHHRTAKRPKLE
Ga0209890_1022893423300026291SoilMTTKTIPEYLEDQRQKDADAQLRMDEESARIQPLNP
Ga0209529_105890213300027334Forest SoilMTTQTIPQYLKEERQKTADTQLRTEQEAARIEPLQHGHHRNSNQS
Ga0208043_103398223300027570Peatlands SoilMTTKTIPAYLEDERQKSKDALLRMEAEGARIQPLRHGHSRRTISNVE
Ga0208827_117611423300027641Peatlands SoilMTAQTIPEYLEEERQKTTDIQLRTEEEAARIQPLQHGRHR
Ga0208827_120402813300027641Peatlands SoilMTTKTIPAYLEDERQRNQDDLLRMEAEAARIQPLRHGHHRTAK
Ga0209009_115399213300027667Forest SoilMTTKTIPEYLEEERQKATYTQLRTEEEAARIQPLQHGYHRTPK
Ga0209040_1053774413300027824Bog Forest SoilMTTQTIPEYLEEERQKTADTQLRTEKEAARIEPLQHGHHRHSA
Ga0209039_1016448013300027825Bog Forest SoilMAIKTIPEYLEDERRSREDTQLRTEEEADRIQLLHPGHH
Ga0209039_1035373613300027825Bog Forest SoilMTTKTIPEYLEDERRNRADTQLRTEEEAARIQPLQHGHHRTPKPP
Ga0209693_1012667613300027855SoilMTTRTIPQYLEEERQKTADTQLRTEQEAARIEPLQHGHHRSSNQPKPELELVPP
Ga0209693_1045214813300027855SoilMSTQTIAEYLDEERQKYVANQLRVDEEAARIRPLQHGHHRAGNRPKLELVTAVKS
Ga0209169_1021117713300027879SoilMTTKTIPAYLEEERQKDRNAQLRKEEEAARIQLLHHGHHRTAKQPKLE
Ga0209275_1062644733300027884SoilMTTQTIPEYLEEERQKASDTQLRTEEEAARIQPLRHGHHRTA
Ga0209006_1015416513300027908Forest SoilMTTKTIPEYLEDERQKDRDAQLRTEEEAARIQPLNHGRHRTSK
Ga0255358_104289113300028069SoilMTTKTIPEYLEDERQKDCDAQLRMEDEAARIQPLNHGH
Ga0302224_1003895813300028759PalsaMTTQTIPEYLEEERQKAADTQLRTQEEAARIQPLQHGHHRT
Ga0302225_1011157413300028780PalsaMTTQTIPEYLEEERQKAADTQLRTQEEAARIQPLQHGHHR
Ga0302222_1032681213300028798PalsaMTTKTIPEYLEGERQKERDAELRAEEEAARIQPLNHGHHRTAKQPK
Ga0265338_1026413823300028800RhizosphereMTTKTIPEYLEDERQKSKDDQVRMEEEATRIQPLRHGHHR
Ga0265338_1102437923300028800RhizosphereMTTKTIPEYLQDQCQKDRNEQMRKEEEAARIQPLY
Ga0308309_1090635913300028906SoilMTTKTIPEYLEDERQKNCDARLRIEAEAARIQPLNH
Ga0311368_1027509533300029882PalsaMTTQTIPEYLEEERQKATDNQLRTEEEAARIQPLQHG
Ga0311327_1007860933300029883BogMTSQTIAEYLDEERQKAADTQLRTAEEAARIQPLQHGHHRTAKQAKV
Ga0311327_1013977913300029883BogMTTQTIKEYLDEEREKASETQLRTEEEAARIQPLQHGHHRMAKQPERTARK
Ga0311359_1018149333300029914BogMTSQTIAEYLDEERQKAADTQLRTAEEAARIQPLQHG
Ga0311326_1049390313300029917BogMTTQTIKEYLDEEREKASETQLRTEEEAARIQPLQHGHHRMAKQPEGTAKQPKLKLL
Ga0311363_1084099043300029922FenMTTKTIPAYLEDERKKDKEAQQRIQEEAARIQPLHHGHHRAAKQPKQEL
Ga0311328_1037941813300029939BogMTTQTIKEYLDEEREKASETQLRTEEEAARIQPLQHGHHRMAKQPERTARKPK
Ga0311340_1083261213300029943PalsaMSTQTIPEYLEEERQKTADTQLRTEKEAARIEPLQHGHHRHSTQSKLEL
Ga0311340_1129284523300029943PalsaMTTKTIPAYLEDERQKDCDSQLRMEEEAARIQPLNHGHHRAAK
Ga0311332_1127750823300029984FenMATKTIPEYLEDERRSREDTQLRTEEEADRIQLLHPGHHRTRKSPEPELPAP
Ga0311350_1008493613300030002FenMTTKTIPEYLEDERQKRKGDLLRTEAEAARIQPLRHGHHRTTKQPELEIASSN
Ga0311360_1019777333300030339BogIPEYLEDERQKRKGDLLRTEAEAARIQPLRHGHHRTTKQPELEIASSN
Ga0302192_1014021123300030507BogMSMATKTIPEYLEDERRNRADTELRTEEEAAHIQSLHHGHHRTPKPPKPELPA
Ga0311355_1158128213300030580PalsaMTTKTIPAYLEDERKKDKDAQQRIQEEAARIQPLHHGHHRAAKQPKQE
Ga0311354_1193034713300030618PalsaMATKTIPEYLEDERRSREGTQLLTDEEAARIHTLHQ
Ga0265459_1336557713300030741SoilMSTQTIAEYLDEEREKYAANQLRTEEEAARIQPLQHGHHRTAKQPRLELVP
Ga0265753_109034713300030862SoilMTTKTIPEYLEDERRKLTEAQLRTEEEAARIQALHP
Ga0302314_1132597123300030906PalsaMATKTIPEYLEDERRKDSDAQLRLEEEAARIQLLNHGRHRTA
Ga0265740_101702923300030940SoilMTTQTIPEYLEDESQKRRDAQLRKEEEAARIRPLRHGHHRTAK
Ga0311366_1095896513300030943FenMATKTIPEYLEDERRSREDTQLRTEEEADRIQLLHPGHHRTR
Ga0265771_101131233300031010SoilMTTQTIPEYLEEERQKAAEAQTRTEEEAARIQPLQHGHHRRAKQPKEL
Ga0265754_103424923300031040SoilMTTQTIPEYLEEERQKTAATQLRTDKEAARIEPLQHGHHR
Ga0265316_1005154953300031344RhizosphereMTTKTIPEYLEDERQKDCDAQLRMEDEAARIQPLNHGHHRTAKQP
Ga0310813_1124624623300031716SoilMTTKTIPEYLEDERQKDRDAQLRMAEEAARIQPLNHGHHRTAKQPKLE
Ga0311301_1085385413300032160Peatlands SoilMTTKTIPAYLEDERQKGRDTQLRIEAEAARIQPLHHGHHRTARQPKL
Ga0311301_1106120013300032160Peatlands SoilMSTQTIAEYLDEERQKYAANQLRVDEEAARIQPLQHGHHRTGKQP
Ga0311301_1250419513300032160Peatlands SoilMTTKTIPEYLEDERRGDADTQRRREEEAARIQALH
Ga0370515_0079239_3_1523300034163Untreated Peat SoilMTTKTIPEYLEAERQKNEDDRIRMEAEAAGIKLLHHGNHRTARQPKLEIP


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.