Metagenome / Metatranscriptome Family F057545

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F057545
Family Type	Metagenome / Metatranscriptome
Number of Sequences	136
Average Sequence Length	42 residues
Representative Sequence	MLREDLMNPDLFSEIVLLGSAALIVVALLLIVVAAFTQPAALA
Number of Associated Samples	91
Number of Associated Scaffolds	136

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	83.21 %
% of genes near scaffold ends (potentially truncated)	22.06 %
% of genes from short scaffolds (< 2000 bps)	66.18 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (83.088 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (26.471 % of family members)
Environment Ontology (ENVO)	Unclassified (38.971 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (83.088 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 46.48% β-sheet: 0.00% Coil/Unstructured: 53.52%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 136 Family Scaffolds
PF00027	cNMP_binding	20.59
PF13545	HTH_Crp_2	18.38
PF12779	WXXGXW	3.68
PF00072	Response_reg	1.47
PF00196	GerE	1.47
PF13481	AAA_25	0.74
PF05532	CsbD	0.74
PF04909	Amidohydro_2	0.74
PF02684	LpxB	0.74
PF11999	Ice_binding	0.74
PF13490	zf-HC2	0.74
PF00069	Pkinase	0.74

COG ID	Name	Functional Category	% Frequency in 136 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	2.94
COG0763	Lipid A disaccharide synthetase	Cell wall/membrane/envelope biogenesis [M]	0.74
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.74

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.09 %
Unclassified	root	N/A	16.91 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.09 %
Unclassified	root	N/A	16.91 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	83.09 %
Unclassified	root	N/A	16.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	50.74 %
Unclassified	root	N/A	16.91 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	27.94 %
Unclassified	root	N/A	16.91 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	6.62 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.94 %
Unclassified	root	N/A	16.91 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	5.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.94 %
Unclassified	root	N/A	16.91 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001082\|JGI12664J13189_1000531	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	5356	Open in IMG/M
3300001593\|JGI12635J15846_10012981	All Organisms → cellular organisms → Bacteria → Acidobacteria	6973	Open in IMG/M
3300002245\|JGIcombinedJ26739_100093417	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2810	Open in IMG/M
3300002245\|JGIcombinedJ26739_100622724	All Organisms → cellular organisms → Bacteria	956	Open in IMG/M
3300002245\|JGIcombinedJ26739_100913704	Not Available	760	Open in IMG/M
3300003370\|JGI26337J50220_1025518	Not Available	678	Open in IMG/M
3300003505\|JGIcombinedJ51221_10025183	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2123	Open in IMG/M
3300004099\|Ga0058900_1414469	Not Available	589	Open in IMG/M
3300004103\|Ga0058903_1473081	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	866	Open in IMG/M
3300004120\|Ga0058901_1000606	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300004135\|Ga0058884_1061567	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	779	Open in IMG/M
3300004135\|Ga0058884_1405353	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1470	Open in IMG/M
3300004468\|Ga0068977_1216364	Not Available	831	Open in IMG/M
3300004631\|Ga0058899_10072511	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1266	Open in IMG/M
3300004631\|Ga0058899_12194411	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300004631\|Ga0058899_12302380	Not Available	549	Open in IMG/M
3300005538\|Ga0070731_10045917	All Organisms → cellular organisms → Bacteria	2918	Open in IMG/M
3300005602\|Ga0070762_10120040	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1544	Open in IMG/M
3300005602\|Ga0070762_10292229	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1024	Open in IMG/M
3300005602\|Ga0070762_11160291	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300005602\|Ga0070762_11160292	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300005610\|Ga0070763_10207764	All Organisms → cellular organisms → Bacteria → Acidobacteria	1046	Open in IMG/M
3300006176\|Ga0070765_100045209	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3554	Open in IMG/M
3300006176\|Ga0070765_100112364	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2375	Open in IMG/M
3300006893\|Ga0073928_10031967	All Organisms → cellular organisms → Bacteria	5040	Open in IMG/M
3300009520\|Ga0116214_1019777	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2400	Open in IMG/M
3300009521\|Ga0116222_1434820	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300009522\|Ga0116218_1033921	All Organisms → cellular organisms → Bacteria	2299	Open in IMG/M
3300009525\|Ga0116220_10414033	All Organisms → cellular organisms → Bacteria → Acidobacteria	604	Open in IMG/M
3300009623\|Ga0116133_1004796	All Organisms → cellular organisms → Bacteria → Acidobacteria	3448	Open in IMG/M
3300009628\|Ga0116125_1005737	All Organisms → cellular organisms → Bacteria	3606	Open in IMG/M
3300009700\|Ga0116217_10374386	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	906	Open in IMG/M
3300010343\|Ga0074044_10013179	All Organisms → cellular organisms → Bacteria → Acidobacteria	6171	Open in IMG/M
3300010379\|Ga0136449_100450597	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2258	Open in IMG/M
3300010379\|Ga0136449_104442302	All Organisms → cellular organisms → Bacteria → Acidobacteria	516	Open in IMG/M
3300011072\|Ga0138563_1046802	Not Available	656	Open in IMG/M
3300011078\|Ga0138565_1033713	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	684	Open in IMG/M
3300011120\|Ga0150983_10274312	All Organisms → cellular organisms → Bacteria → Acidobacteria	544	Open in IMG/M
3300011120\|Ga0150983_10276010	All Organisms → cellular organisms → Bacteria → Acidobacteria	508	Open in IMG/M
3300011120\|Ga0150983_12315369	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1233	Open in IMG/M
3300011120\|Ga0150983_13706282	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1715	Open in IMG/M
3300011120\|Ga0150983_14577327	Not Available	853	Open in IMG/M
3300011120\|Ga0150983_15531906	All Organisms → cellular organisms → Bacteria → Acidobacteria	570	Open in IMG/M
3300011120\|Ga0150983_15535190	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300014489\|Ga0182018_10079769	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1943	Open in IMG/M
3300014501\|Ga0182024_10066064	All Organisms → cellular organisms → Bacteria	5530	Open in IMG/M
3300014501\|Ga0182024_10120347	All Organisms → cellular organisms → Bacteria	3758	Open in IMG/M
3300014501\|Ga0182024_10446337	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1660	Open in IMG/M
3300014501\|Ga0182024_10505406	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1536	Open in IMG/M
3300017822\|Ga0187802_10084612	All Organisms → cellular organisms → Bacteria → Acidobacteria	1184	Open in IMG/M
3300017822\|Ga0187802_10115422	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300017942\|Ga0187808_10603495	Not Available	510	Open in IMG/M
3300017943\|Ga0187819_10131149	All Organisms → cellular organisms → Bacteria	1494	Open in IMG/M
3300017946\|Ga0187879_10064844	All Organisms → cellular organisms → Bacteria → Acidobacteria	2128	Open in IMG/M
3300018012\|Ga0187810_10308676	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300018038\|Ga0187855_10023215	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4031	Open in IMG/M
3300018038\|Ga0187855_10902413	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300018043\|Ga0187887_10010241	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6385	Open in IMG/M
3300018046\|Ga0187851_10015343	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5500	Open in IMG/M
3300019182\|Ga0184598_133954	Not Available	781	Open in IMG/M
3300019186\|Ga0184588_142442	Not Available	739	Open in IMG/M
3300019188\|Ga0184599_145956	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	697	Open in IMG/M
3300019786\|Ga0182025_1127350	Not Available	831	Open in IMG/M
3300020579\|Ga0210407_10384219	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1099	Open in IMG/M
3300020579\|Ga0210407_10741809	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300020579\|Ga0210407_11072176	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300020580\|Ga0210403_10008994	All Organisms → cellular organisms → Bacteria	8203	Open in IMG/M
3300020580\|Ga0210403_10121782	All Organisms → cellular organisms → Bacteria	2123	Open in IMG/M
3300020580\|Ga0210403_10374720	All Organisms → cellular organisms → Bacteria → Acidobacteria	1164	Open in IMG/M
3300020580\|Ga0210403_10775465	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	764	Open in IMG/M
3300020581\|Ga0210399_10287873	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1371	Open in IMG/M
3300020581\|Ga0210399_10511947	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	997	Open in IMG/M
3300020581\|Ga0210399_10847860	All Organisms → cellular organisms → Bacteria → Acidobacteria	744	Open in IMG/M
3300020581\|Ga0210399_11126027	Not Available	627	Open in IMG/M
3300020582\|Ga0210395_10017142	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5323	Open in IMG/M
3300020582\|Ga0210395_10241167	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1358	Open in IMG/M
3300020582\|Ga0210395_11084967	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300020583\|Ga0210401_10445144	All Organisms → cellular organisms → Bacteria	1158	Open in IMG/M
3300020583\|Ga0210401_11079393	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	661	Open in IMG/M
3300021168\|Ga0210406_10127882	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2144	Open in IMG/M
3300021170\|Ga0210400_10044577	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3445	Open in IMG/M
3300021170\|Ga0210400_10078274	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2596	Open in IMG/M
3300021171\|Ga0210405_10131731	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1978	Open in IMG/M
3300021171\|Ga0210405_10174499	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1703	Open in IMG/M
3300021178\|Ga0210408_11130499	Not Available	601	Open in IMG/M
3300021404\|Ga0210389_10089484	All Organisms → cellular organisms → Bacteria → Acidobacteria	2366	Open in IMG/M
3300021404\|Ga0210389_10402396	All Organisms → cellular organisms → Bacteria → Acidobacteria	1076	Open in IMG/M
3300021405\|Ga0210387_10889268	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	784	Open in IMG/M
3300021407\|Ga0210383_10077107	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2789	Open in IMG/M
3300021407\|Ga0210383_11511386	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300021420\|Ga0210394_10002649	All Organisms → cellular organisms → Bacteria → Acidobacteria	24197	Open in IMG/M
3300021420\|Ga0210394_11349970	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300021474\|Ga0210390_10642260	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	887	Open in IMG/M
3300021474\|Ga0210390_11043235	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300021478\|Ga0210402_11268780	All Organisms → cellular organisms → Bacteria → Acidobacteria	664	Open in IMG/M
3300021479\|Ga0210410_10060541	All Organisms → cellular organisms → Bacteria	3307	Open in IMG/M
3300021559\|Ga0210409_10064570	All Organisms → cellular organisms → Bacteria → Acidobacteria	3413	Open in IMG/M
3300022557\|Ga0212123_10689258	All Organisms → cellular organisms → Bacteria → Acidobacteria	631	Open in IMG/M
3300022726\|Ga0242654_10374187	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300022881\|Ga0224545_1035880	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300024225\|Ga0224572_1092215	Not Available	559	Open in IMG/M
3300026335\|Ga0209804_1000909	All Organisms → cellular organisms → Bacteria	20931	Open in IMG/M
3300027370\|Ga0209010_1000007	All Organisms → cellular organisms → Bacteria	230472	Open in IMG/M
3300027565\|Ga0209219_1114523	Not Available	660	Open in IMG/M
3300027604\|Ga0208324_1019109	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2128	Open in IMG/M
3300027641\|Ga0208827_1174824	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300027660\|Ga0209736_1011519	All Organisms → cellular organisms → Bacteria	2826	Open in IMG/M
3300027729\|Ga0209248_10002148	All Organisms → cellular organisms → Bacteria	6327	Open in IMG/M
3300027768\|Ga0209772_10215864	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300027854\|Ga0209517_10286869	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	968	Open in IMG/M
3300027854\|Ga0209517_10523973	All Organisms → cellular organisms → Bacteria → Acidobacteria	641	Open in IMG/M
3300027854\|Ga0209517_10637327	Not Available	558	Open in IMG/M
3300027855\|Ga0209693_10006777	All Organisms → cellular organisms → Bacteria	5264	Open in IMG/M
3300027855\|Ga0209693_10447815	Not Available	621	Open in IMG/M
3300027889\|Ga0209380_10315899	All Organisms → cellular organisms → Bacteria	917	Open in IMG/M
3300027895\|Ga0209624_10387452	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	932	Open in IMG/M
3300028016\|Ga0265354_1004664	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1426	Open in IMG/M
3300028037\|Ga0265349_1027787	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	526	Open in IMG/M
3300028047\|Ga0209526_10832663	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300028906\|Ga0308309_10004798	All Organisms → cellular organisms → Bacteria	8158	Open in IMG/M
3300030862\|Ga0265753_1051784	All Organisms → cellular organisms → Bacteria	731	Open in IMG/M
3300030991\|Ga0073994_10021940	Not Available	679	Open in IMG/M
3300031231\|Ga0170824_112389926	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300031446\|Ga0170820_11352896	All Organisms → cellular organisms → Bacteria	912	Open in IMG/M
3300031708\|Ga0310686_111827034	All Organisms → cellular organisms → Bacteria → Acidobacteria	1902	Open in IMG/M
3300031708\|Ga0310686_115432940	All Organisms → cellular organisms → Bacteria	2131	Open in IMG/M
3300031715\|Ga0307476_10005016	All Organisms → cellular organisms → Bacteria	7980	Open in IMG/M
3300031718\|Ga0307474_10397955	All Organisms → cellular organisms → Bacteria	1071	Open in IMG/M
3300031962\|Ga0307479_10555196	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1131	Open in IMG/M
3300031962\|Ga0307479_10588565	All Organisms → cellular organisms → Bacteria → Acidobacteria	1095	Open in IMG/M
3300032160\|Ga0311301_10358858	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2271	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.53%
Host-Associated	Host-Associated	1.47%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.03%
Aquatic	Environmental → Aquatic	12.50%
Plants	Host-Associated → Plants	1.47%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	84.56%
Freshwater	Environmental → Aquatic → Freshwater	11.03%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.47%
Peat	Environmental → Terrestrial → Peat	1.47%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.47%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	49.26%
Loam	Environmental → Terrestrial → Soil → Loam	30.15%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	11.03%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.15%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.47%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.47%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.74%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.74%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	30.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	30.15%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.65%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.88%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	4.41%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.68%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.47%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.47%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.47%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.74%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.74%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.47%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	20.59%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	11.76%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	9.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.15%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	3.68%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.68%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	3.68%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.94%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.21%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.47%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.47%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.47%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.74%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.74%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.74%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.74%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.74%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.74%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.74%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001082	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3	Environmental	Open in IMG/M
3300001084	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003370	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004099	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF236 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004103	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF242 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004120	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF238 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004135	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004468	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 74 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009623	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10	Environmental	Open in IMG/M
3300009628	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011072	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 48 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011078	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 50 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300019182	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZE1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019186	Soil microbial communities from Bohemian Forest, Czech Republic ? CSE3 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019188	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZE2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022881	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 20-24	Environmental	Open in IMG/M
3300024225	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU5	Host-Associated	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300027370	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)	Environmental	Open in IMG/M
3300027565	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027590	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)	Environmental	Open in IMG/M
3300027604	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)	Environmental	Open in IMG/M
3300027641	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)	Environmental	Open in IMG/M
3300027660	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027768	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300028016	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1	Host-Associated	Open in IMG/M
3300028037	Soil microbial communities from Maridalen valley, Oslo, Norway - NSE1	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030862	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12664J13189_10005317	3300001082	Forest Soil	MSREDLMKPDLLSEIVLLGSAAVIVVVLLLIVVAALTQPTALA*
JGI12648J13191_10302372	3300001084	Forest Soil	MKPDLLSQIVPLGSAAVMVFVLLLILVAALTQATAPA*
JGI12635J15846_100129819	3300001593	Forest Soil	MSREDLMKPDLLSEIVLLGSAAVIVVVLLLIAVAALTQPTALA*
JGIcombinedJ26739_1000934174	3300002245	Forest Soil	MRQQDLMNPDLLSEIVLLGSAALLVAGLLLIVVAAVTRSAALA*
JGIcombinedJ26739_1006227241	3300002245	Forest Soil	MRCEDLMSPDLISEVVLLGSAVLIVVVLMLIVVAAFT
JGIcombinedJ26739_1009137042	3300002245	Forest Soil	MRREDLMSPDLLSEIVLLGSVALMVVTLLLIVVAAFTQPTAHMAGM*
JGI26337J50220_10255182	3300003370	Bog Forest Soil	MSREDLMKPDLLSEIVLLGSAAVMVVVLLLIVVAALTQPIALA*
JGIcombinedJ51221_100251832	3300003505	Forest Soil	MLREDVMDPDLFSEIVLLGSAALIVVAFLLIVMATFTQPAALA*
Ga0058900_14144692	3300004099	Forest Soil	GDLMNPDLFSEIVLLGSAALIVVAFLLIVMATFTQPAALA*
Ga0058903_14730812	3300004103	Forest Soil	MRREDLMSPDLLSEIVLLGSAALMIVTLLLIVVAAFTQPTASMAGM*
Ga0058901_10006061	3300004120	Forest Soil	MLREDVMDPDLFSEIVLLGSAALIVVAFLLIVVAAFTQPAALA*
Ga0058884_10615671	3300004135	Forest Soil	DLMNPDLLSEIVLLGSAALIAVTLLLIVASALTQPAALA*
Ga0058884_14053533	3300004135	Forest Soil	MLPEDLMNPDLLSEVVLLGSAALIIVALLLIVAAVLTQPAALA*
Ga0068977_12163642	3300004468	Peatlands Soil	RTEMRREDLMSPDLLSEIVLLGSAALIVVAWLLIVVAALTQPAALA*
Ga0058899_100725113	3300004631	Forest Soil	MRREDLMNPDLLSEIVLLGSAALLVVGLSLIVAAALAQSAVLA*
Ga0058899_121944111	3300004631	Forest Soil	NPGEVRTEMLPEDLMNPDLLSEVVLLGTAALIIVALLLIVAAVLTQPAALA*
Ga0058899_123023801	3300004631	Forest Soil	MRQQDLMSPDLLSEIVLLGSAALLVVGLLLIVAAALTQPVALA*
Ga0070731_100459172	3300005538	Surface Soil	MCCEDLMSPDLVSEVVLVGSAALMLAVLILVVVAALTQPAALA*
Ga0070762_101200403	3300005602	Soil	MLRGDLMNPDLFSEIVLLGSAALIVVAFLLIVVAAFTQPAALA*
Ga0070762_102922291	3300005602	Soil	REDLMKPDLFSEVVLLGSAALIVVALLLIVVAAFTQPAALA*
Ga0070762_111602912	3300005602	Soil	MLREDLMKPDLFSEVVLLGSAALIVVALLLIVVAAFTQPAA
Ga0070762_111602922	3300005602	Soil	MFREDLMKPDLFSEVVLLGSAALIVVALLLIVVAAFTQPAA
Ga0070763_100704464	3300005610	Soil	MNRKDLMKPDLLSQIVPLGSAAVMVFVLLLILVAALTQATAPA*
Ga0070763_102077642	3300005610	Soil	MFREDLMKPDLFSEVVLLGSAALIVVALLLIVVAAFTQPAALA*
Ga0070765_1000452095	3300006176	Soil	MSPDLLSEIVLLGSVGLMVVALLFTVVAALAQPSALA*
Ga0070765_1001123646	3300006176	Soil	GKTEMNRKDLMKPDLLSQIVPLGSAAVMVFVLLLILVAALTQATAPA*
Ga0073928_100319673	3300006893	Iron-Sulfur Acid Spring	MRREDLMSPDLLSEIVLLGSAALMVVTLLLIVVAAFTQPTASMAGM*
Ga0116214_10197772	3300009520	Peatlands Soil	MKPDLFSEIVLLGSAALIVVALLLIVVAAFTQPAALA*
Ga0116222_14348202	3300009521	Peatlands Soil	MRREDLMSPDLLSEIVLLGSAALIVVAWLLIVVAALTQPAALA*
Ga0116218_10339213	3300009522	Peatlands Soil	MRREDLMSPDLLSEIVLLGSAALIVVTWLLIVVAALTHAAVLA*
Ga0116220_104140332	3300009525	Peatlands Soil	MRREDLMSPDLLSKIVLLGRVALMVVALLLIVVAALTQPTALA*
Ga0116133_10047963	3300009623	Peatland	MSRKDLMSPDLLSEIVLLGSAAVIVVVWLLIAVAALTQPIALT*
Ga0116125_10057375	3300009628	Peatland	MSRKDLMSPDLLSEIVLLGSAAVIVVVWLLIVVAALTQPIALT*
Ga0116217_103743861	3300009700	Peatlands Soil	MRREDLMSPDLLSKIVLLGSVALMVVALLLIVVAALTQPTALA*
Ga0074044_100131796	3300010343	Bog Forest Soil	MRREDLMSPDLLSEIVLLGSVALMVVALLLIVVAALTQPAALA*
Ga0136449_1004505972	3300010379	Peatlands Soil	MRREDLMQPDLLSEIVLLGSAALIVVALLLIAVAAFTQPTALA*
Ga0136449_1044423022	3300010379	Peatlands Soil	MLREDLMNPDLFSEIVLLGSAALIVVALLLIVVAAFTQPAALA*
Ga0138563_10468021	3300011072	Peatlands Soil	TEMRREDLMSPDLLSEIVLLGSAALIVVAWLLIVVAALTQPAALA*
Ga0138565_10337132	3300011078	Peatlands Soil	MRREDLMSPDLLSEIVLLGSVALMVVALLLIVVAALTQPTALA*
Ga0150983_102743122	3300011120	Forest Soil	HREDLMQPDLLSEIVLVGSVALMVVALALIVVAAFTQPTALA*
Ga0150983_102760102	3300011120	Forest Soil	HREDLMQPDLLSEIVLVGSVALMVVALALIVVAAFTQPTAPA*
Ga0150983_123153691	3300011120	Forest Soil	MNPDLLSEVVLLGSAALIIVALLLIVAAVLTQPAALA*
Ga0150983_137062822	3300011120	Forest Soil	MNPDLFSEIVLLGSAALIVVALLLIAVAAFTQPAALA*
Ga0150983_145773271	3300011120	Forest Soil	RHSWGTEMRREDLMNPDLLSEIVLLGSAAVIVVALLLIVVAALTQPTALA*
Ga0150983_155319061	3300011120	Forest Soil	MRRDDLMSPDLLSEIVLLGSGALMVVALLLTVAAVLTQPAALA*
Ga0150983_155351902	3300011120	Forest Soil	MRQQDLMNPDLLSEVVLVGSAALLVVGLLLVVLAALTQSAALA*
Ga0182018_100797691	3300014489	Palsa	MRCEDLMSPDLVSEIVLVGSVALMVAVLIGIVVAALTQPAALA*
Ga0182024_100660642	3300014501	Permafrost	MRREDLMSPDLLSEIVLLGSVALMVVTLLLIAVAAFTQPTARIAGM*
Ga0182024_101203472	3300014501	Permafrost	MRREDLMSPDLLSEIVLLGSVALIVVTLLLIVVAAFTQPTARIAGM*
Ga0182024_104463371	3300014501	Permafrost	MRCDDLMSPDLVSEIVLVGSIALMVAVLVLIVVAALTQPAALA*
Ga0182024_105054064	3300014501	Permafrost	MRREDLMSSDLLSEIVLLGSVALMVVTLLLIVVAAFTQPTARMAGM*
Ga0187802_100846123	3300017822	Freshwater Sediment	MRREDLMSPDLLSEIVLLGSAALIVVAWLLIVVAALTQPAALA
Ga0187802_101154222	3300017822	Freshwater Sediment	MLREDLMNPDLFSEIVLLGSAALIVVALLLIAVAAFTQPAALA
Ga0187808_106034951	3300017942	Freshwater Sediment	MLREDLMNPDLFSEIVLLGSAALIVVALLLIVVAAFTQPGALA
Ga0187819_101311493	3300017943	Freshwater Sediment	MRHEDLMSPDLLSEIVLLGSVAVLVVGLLLIVLAALAQPAALA
Ga0187879_100648442	3300017946	Peatland	MSRKDLMSPDLLSEIVLLGSAAVIVVVWLLIAVAALTQPIALT
Ga0187810_103086762	3300018012	Freshwater Sediment	MLREDLMNPDLFSEIVLLGSAALIVVALLLIVVAAF
Ga0187855_100232156	3300018038	Peatland	MSRKDLMSPDLLSEIVLLGSAAVIVVVWLLIVVAALTQPIALT
Ga0187855_109024132	3300018038	Peatland	DLMSPDLLSEIVLLGSAAVIVVVWLLIAVAALTQPIALT
Ga0187887_100102414	3300018043	Peatland	MSPDLLSEIVLLGSAAVIVVVWLLIAVAALTQPIALT
Ga0187851_100153435	3300018046	Peatland	MSPDLLSEIVLLGSAAVIVVVWLLIVVAALTQPIALT
Ga0184598_1339542	3300019182	Soil	NPDLFSEIVLLGSAALIVVAFLLIVVAAFTQPAALA
Ga0184588_1424421	3300019186	Soil	MLREDLMNPDLFSEIVLLGSAALIVVAFLLIVVAAFTQPAALA
Ga0184599_1459561	3300019188	Soil	MLREDLMNPDLFSEIVLLGSAALIVVALLLIVVAAFTQPAALA
Ga0182025_11273502	3300019786	Permafrost	MRREDLMSPDLLSEIVLLGSVALIVVTLLLIVVAAFTQPTARIAGM
Ga0210407_103842192	3300020579	Soil	MLREDLMNPDLFSEIVLLGSAALIAVAWLLIVVAAFIQPAALA
Ga0210407_107418092	3300020579	Soil	MLLEDLMKPDLFSEVVLLGSAALIVVALLLIVVAAFTQPAALA
Ga0210407_110721761	3300020579	Soil	MLREDLMKPDMLSEIVLLGSAAPFVVAFVLIAVAVLTQPGALA
Ga0210403_100089944	3300020580	Soil	MKPDLFSEVVLLGSAALIAVALLVIVVAAFTQPAALA
Ga0210403_101217822	3300020580	Soil	MRQQDLMNPDLLSEIVLLGSAALLVVGLLLIVVAAFTQPAALV
Ga0210403_103747202	3300020580	Soil	MKPDMLSEIVLLGSAAPFVVAFVLIAVAVLTQPGALA
Ga0210403_107754652	3300020580	Soil	RTEMLREDLMNPDLFSEIVLLGSAALIAVAWLLIVVAAFTQPAALA
Ga0210399_102878732	3300020581	Soil	VLREDLMKPDLFSEVVLLGSAALIAVALLVIVVAAFTQPAALA
Ga0210399_105119472	3300020581	Soil	MLLEDLMKPDLFSEIVLLGSAALIVVALLLIVVAAFTQPAALA
Ga0210399_108478602	3300020581	Soil	MLRDDLMKPDLLSEVVLLGSAALIVVALFLIVVAAFTQPVALA
Ga0210399_111260272	3300020581	Soil	TEMRREDLMNPDLLSEIVLLGSAAVIVVALLLIVVAALTQPTALA
Ga0210395_100171423	3300020582	Soil	MLREDLMNPDLFSEIVLLGSAALIAVAWLLIVVAAFIQPAALV
Ga0210395_102411673	3300020582	Soil	MLREDVMDPDLFSEIVLLGSAALIVVAFLLIVMATFTQPAALA
Ga0210395_110849672	3300020582	Soil	MLREDLMNPDLFSEIVLLGSAALIVVALLLIAVAAFTQPA
Ga0210401_104451445	3300020583	Soil	MLPEDLMRPDLLSEIVLLGSPALIIVVLLLIVAAAFRQPAALA
Ga0210401_110793931	3300020583	Soil	PDLLSEIVLLGSGALMVVALLLTVAAVLTQPAALA
Ga0210406_101278821	3300021168	Soil	MLREDLMNPDLFSEIVLLGSGALIAVAWLLIVVAAFTQPAALA
Ga0210400_100445775	3300021170	Soil	MRQQDLMNPDLLSEILLLGSAALLVVGLLLIVVAAFTQPAALV
Ga0210400_100782743	3300021170	Soil	MRQQDLMNPDLLSEVVLVGSAALLVVGLLLVVLAALTQSAALA
Ga0210405_101317313	3300021171	Soil	MLRGGLMKPDLLSEIVLLDMGALIVVALLLIVVAAVTQPTALQVAR
Ga0210405_101744992	3300021171	Soil	MLREDLMKPDLFSEVVLLGSAALIVVALLLTVVAAFTQPAALA
Ga0210408_111304991	3300021178	Soil	MLREDLMKPDLLSEIVLLGSAAAIIVVLLLIVAAALTQPAALA
Ga0210389_100894843	3300021404	Soil	MLREGLMKPDLLSEIVLLDMGALIVVALLLIVVAAVTQPTALQVAR
Ga0210389_104023962	3300021404	Soil	MLREDLMNPDLFSEIVLLGSAALIAVAWLLIVVAAFTQPAALA
Ga0210387_108892681	3300021405	Soil	LMKPDMLSEIVLLGSAAPFVVAFVLIAVAVLTQPGALA
Ga0210383_100771075	3300021407	Soil	SRQNWRTEMLREDLMNPDLFSEIVLLGSAALVVVAWLLIVVAAFAQPAALA
Ga0210383_115113861	3300021407	Soil	MLREDLMNPDLFSEVVLLGSAALIVVALLLIVVAACTQP
Ga0210394_1000264916	3300021420	Soil	MRREDLMSPDLLSEIVLLGSAALMIVTLLLIVVAAFTQPTASMAGM
Ga0210394_113499703	3300021420	Soil	MLREDLMNPDLFSEIVLLGSAALVVVALLLIVVAAFAQPAALA
Ga0210390_106422601	3300021474	Soil	MLREDLMNPDLFSEIVLLGSAALVVVAWLLIVVAAFAQPAALA
Ga0210390_110432351	3300021474	Soil	MLREDVMDPDLFSEIVLLGSAALIVVAFLLIVMATF
Ga0210402_112687801	3300021478	Soil	MRQQDLMNRDLLSEIVLLGSAALLVVGLLLIVVAAFTQPAALV
Ga0210410_100605411	3300021479	Soil	MQPDLLSEIVLVGSVALMVVALALIVVAAFTQPTALA
Ga0210409_100645704	3300021559	Soil	MFREDLMKPDLFSEVVLLGSAALIVVALLLIVVAAFTQPAALA
Ga0212123_106892582	3300022557	Iron-Sulfur Acid Spring	MRREDLMSPDLLSEIVLLGSAALMVVTLLLIVVAAFTQPTASMAGM
Ga0242654_103741871	3300022726	Soil	REDLMNPDLLSEIVLLGSAAVIVVALLLIVVAALTQPTALA
Ga0224545_10358802	3300022881	Soil	MRREDLMSSDLLSEIVLLGSVALMVVTLLLIVVAAFTQPTARMAGM
Ga0224572_10922152	3300024225	Rhizosphere	MLREDLMKPDLFSEIVLLGSAALIVVALLLIVVAAFTQPAALA
Ga0209804_10009093	3300026335	Soil	MHPEELMKPDLFSEIMLLGIGELIFVALLLIVVAALTRS
Ga0209010_1000007151	3300027370	Forest Soil	MSREDLMKPDLLSEIVLLGSAAVIVVVLLLIVVAALTQPTALA
Ga0209219_11145232	3300027565	Forest Soil	MKPDLLSEIVLLGSAALLVAGLLLIVAAALIQPAALA
Ga0209116_10343501	3300027590	Forest Soil	RGKTEMNRKDLMKPDLLSQIVPLGSAAVMVFVLLLILVAALTQATAPA
Ga0208324_10191093	3300027604	Peatlands Soil	MPREDLMKPDLFSEIVLLGSAALIVVALLLIVVAAFTQPAALA
Ga0208827_11748242	3300027641	Peatlands Soil	MRREDLMSPDLLSEIVLLGSAALIVVTWLLIVVAALTHAAVLA
Ga0209736_10115192	3300027660	Forest Soil	MRQEDLMSPDLLSEIVLLGSAALLVVGLLLIVAAALTQPVALA
Ga0209248_100021482	3300027729	Bog Forest Soil	MSREDLMKPDLLSEIVLLGSAAVMVVVLLLIVVAALTQPIALA
Ga0209772_102158641	3300027768	Bog Forest Soil	MSREDLMKPDLLSEIVLLGSAAVMVVVLLLIVVAALTQPI
Ga0209517_102868693	3300027854	Peatlands Soil	MRREDLMSPDLLSKIVLLGSVALMVVALLLIVVAALTQPTALA
Ga0209517_105239732	3300027854	Peatlands Soil	MKPDLFSEIVLLGSAALIVVALLLIVVAAFTQPAALA
Ga0209517_106373271	3300027854	Peatlands Soil	MRREDLMSPDLLSEIVLLGSVALMVVALLLIVVAALTQPAALA
Ga0209693_100067772	3300027855	Soil	MLRGDLMNPDLFSEIVLLGSAALIVVAFLLIVVAAFTQPAALA
Ga0209693_104478151	3300027855	Soil	MRQQDLMSPDLLSEIVLLGSAALLVVGLLLIVAAALTQPVALA
Ga0209380_100199724	3300027889	Soil	MNRKDLMKPDLLSQIVPLGSAAVMVFVLLLILVAALTQATAPA
Ga0209380_103158992	3300027889	Soil	MNPDLFSEIVLLGSAALIVVAFLLIVVAAFTQPAALA
Ga0209624_103874522	3300027895	Forest Soil	MRREDLMSPDLLSEIVLLGSVALMVVTLLLIVVAAFTQPTAHMAGM
Ga0265354_10046643	3300028016	Rhizosphere	MLREDLMNPDLFSEIVLLGSAALVVVALLLIVAAAFAQPAALV
Ga0265349_10277872	3300028037	Soil	DLMNPDLFSEIVLLGSAALVVVAWLLIVVAAFAQPAALA
Ga0209526_108326632	3300028047	Forest Soil	MRREDLMSPDLLSELVLLGSAAVIVGALLLIGAVT
Ga0308309_100047984	3300028906	Soil	MSPDLLSEIVLLGSVGLMVVALLFTVVAALAQPSALA
Ga0311339_110513561	3300029999	Palsa	FWRQGKTEMNRKDLMKPDLLSQIVPLGSAAVMVFVLLLILVAALTQATAPA
Ga0265753_10517842	3300030862	Soil	MLREDLMKPDLLSEIVLLGSAALIIVVLLLIVAAAFTQPAALA
Ga0073994_100219402	3300030991	Soil	MRQQDLMNPDLLSEVVLVGSAALLVVGLLLVVLAALTQPAALA
Ga0170824_1123899261	3300031231	Forest Soil	MHREDLMNPDLLSEIVLLGSAAVIVVALLLIVVAALTQPTALA
Ga0170820_113528961	3300031446	Forest Soil	MHREDLMNPDLLSEIVLLGSAAVIVVALLLIVVAALTPPTALA
Ga0310686_1118270342	3300031708	Soil	MNPDLFGEIVLLGRAALIVVAMLLVVVAAFTQPAALA
Ga0310686_1154329402	3300031708	Soil	MLREDLMNPDLLSEIVLLGSAALIVLALLLIVVAVFTHPAALA
Ga0307476_100050168	3300031715	Hardwood Forest Soil	MRRDDLMSPDLLSEIVLLGSGALMVVALLLTVAAVLTQPAALA
Ga0307474_103979551	3300031718	Hardwood Forest Soil	MRREDLMSPDLLSEIVLLGSVALMVAALLLIAVAAVTQSAALA
Ga0307479_105551962	3300031962	Hardwood Forest Soil	MHREDLMQPDLLSEIVLVGSVALMVVALALIVVAAFTQPTAPA
Ga0307479_105885652	3300031962	Hardwood Forest Soil	MRHEDLMNPDLLSEIVLLGSAALIAVTLLLIVVAALTQPAALA
Ga0311301_103588582	3300032160	Peatlands Soil	MRREDLMQPDLLSEIVLLGSAALIVVALLLIAVAAFTQPTALA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F057545

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences