Metagenome / Metatranscriptome Family F058784

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F058784
Family Type	Metagenome / Metatranscriptome
Number of Sequences	134
Average Sequence Length	61 residues
Representative Sequence	MTSDERAQLIEDIRRSASIREHIIQQASADKEFDIAAAWETLDELDQSINQRVVKARSKE
Number of Associated Samples	105
Number of Associated Scaffolds	134

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	37.31 %
% of genes near scaffold ends (potentially truncated)	28.36 %
% of genes from short scaffolds (< 2000 bps)	92.54 %
Associated GOLD sequencing projects	100
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.76

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (50.746 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (14.179 % of family members)
Environment Ontology (ENVO)	Unclassified (25.373 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (51.493 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 57.95% β-sheet: 0.00% Coil/Unstructured: 42.05%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.76
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.76
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.47.2.1: t-snare proteins	d1ez3a_	1ez3	0.82705
a.29.3.0: automated matches	d4rm7a2	4rm7	0.80899
a.238.1.2: Arfaptin, Rac-binding fragment	d1i4ta_	1i4t	0.80548
a.183.1.1: Nop domain	d5ganf2	5gan	0.80015
a.7.2.1: Enzyme IIa from lactose specific PTS, IIa-lac	d1e2aa_	1e2a	0.79651

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 134 Family Scaffolds
PF00175	NAD_binding_1	2.99
PF07676	PD40	2.24
PF00072	Response_reg	1.49
PF07704	PSK_trans_fac	1.49
PF04972	BON	1.49
PF00069	Pkinase	1.49
PF02687	FtsX	1.49
PF08238	Sel1	0.75
PF14284	PcfJ	0.75
PF02604	PhdYeFM_antitox	0.75
PF12520	DUF3723	0.75
PF07635	PSCyt1	0.75
PF13011	LZ_Tnp_IS481	0.75
PF13004	BACON	0.75
PF00156	Pribosyltran	0.75
PF00805	Pentapeptide	0.75
PF12796	Ank_2	0.75
PF05199	GMC_oxred_C	0.75
PF13280	WYL	0.75
PF00970	FAD_binding_6	0.75
PF08308	PEGA	0.75
PF04978	DUF664	0.75
PF01850	PIN	0.75
PF04140	ICMT	0.75
PF07332	Phage_holin_3_6	0.75
PF05195	AMP_N	0.75
PF00990	GGDEF	0.75
PF13683	rve_3	0.75
PF12704	MacB_PCD	0.75
PF13676	TIR_2	0.75
PF01274	Malate_synthase	0.75
PF01047	MarR	0.75
PF11188	DUF2975	0.75
PF16925	TetR_C_13	0.75

COG ID	Name	Functional Category	% Frequency in 134 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	5.97
COG4423	Uncharacterized conserved protein	Function unknown [S]	1.49
COG0006	Xaa-Pro aminopeptidase	Amino acid transport and metabolism [E]	0.75
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	0.75
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	0.75
COG2225	Malate synthase	Energy production and conversion [C]	0.75
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	0.75
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	0.75

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.75 %
All Organisms	root	All Organisms	49.25 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.75 %
cellular organisms	root	All Organisms → cellular organisms	49.25 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.75 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	49.25 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.75 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	25.37 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.48 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.75 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	14.18 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	2.24 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.49 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.49 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.75 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.69 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	2.24 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.49 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.75 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.75 %
Acidobacteria bacterium 13_2_20CM_2_66_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_2_66_4	0.75 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	0.75 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.69 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	2.24 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.49 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.75 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.75 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.75 %
Acidobacteria bacterium 13_2_20CM_2_66_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_2_66_4	0.75 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.69 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	2.24 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.49 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.75 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.75 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.75 %
Acidobacteria bacterium 13_2_20CM_2_66_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_2_66_4	0.75 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.69 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	1.49 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.49 %
unclassified Luteitalea	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea	0.75 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.75 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.75 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.75 %
Acidobacteria bacterium 13_2_20CM_2_66_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_2_66_4	0.75 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.69 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	1.49 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.49 %
Luteitalea sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	0.75 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.75 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.75 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.75 %
Acidobacteria bacterium 13_2_20CM_2_66_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_2_66_4	0.75 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	0.75 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459016\|G1P06HT01BKT6M	Not Available	612	Open in IMG/M
3300000881\|JGI10215J12807_1040991	Not Available	959	Open in IMG/M
3300000891\|JGI10214J12806_10443531	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	751	Open in IMG/M
3300000955\|JGI1027J12803_108667297	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
3300000956\|JGI10216J12902_100828165	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	677	Open in IMG/M
3300000956\|JGI10216J12902_103652707	Not Available	694	Open in IMG/M
3300000956\|JGI10216J12902_113173801	All Organisms → cellular organisms → Bacteria → Acidobacteria	667	Open in IMG/M
3300000956\|JGI10216J12902_116198800	Not Available	564	Open in IMG/M
3300004114\|Ga0062593_102741892	Not Available	562	Open in IMG/M
3300004157\|Ga0062590_102896562	Not Available	513	Open in IMG/M
3300004463\|Ga0063356_102828730	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300004463\|Ga0063356_103967046	Not Available	637	Open in IMG/M
3300004463\|Ga0063356_104738893	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	585	Open in IMG/M
3300004463\|Ga0063356_106514864	Not Available	500	Open in IMG/M
3300004480\|Ga0062592_100323914	All Organisms → cellular organisms → Bacteria → Acidobacteria	1181	Open in IMG/M
3300004480\|Ga0062592_101742580	Not Available	607	Open in IMG/M
3300004480\|Ga0062592_102442485	Not Available	525	Open in IMG/M
3300004799\|Ga0058863_10782166	Not Available	697	Open in IMG/M
3300005166\|Ga0066674_10333075	Not Available	713	Open in IMG/M
3300005187\|Ga0066675_11055560	Not Available	608	Open in IMG/M
3300005294\|Ga0065705_10585288	Not Available	716	Open in IMG/M
3300005294\|Ga0065705_11065406	Not Available	531	Open in IMG/M
3300005332\|Ga0066388_104850827	Not Available	684	Open in IMG/M
3300005332\|Ga0066388_105833174	Not Available	623	Open in IMG/M
3300005337\|Ga0070682_100328052	Not Available	1133	Open in IMG/M
3300005437\|Ga0070710_10579615	All Organisms → cellular organisms → Bacteria	778	Open in IMG/M
3300005439\|Ga0070711_100507450	All Organisms → cellular organisms → Bacteria	995	Open in IMG/M
3300005440\|Ga0070705_100932521	Not Available	700	Open in IMG/M
3300005466\|Ga0070685_11551542	Not Available	511	Open in IMG/M
3300005471\|Ga0070698_100453726	All Organisms → cellular organisms → Bacteria	1218	Open in IMG/M
3300005539\|Ga0068853_101148800	Not Available	749	Open in IMG/M
3300005549\|Ga0070704_100720863	Not Available	886	Open in IMG/M
3300005549\|Ga0070704_101150121	Not Available	706	Open in IMG/M
3300005553\|Ga0066695_10268565	All Organisms → cellular organisms → Bacteria	1077	Open in IMG/M
3300005558\|Ga0066698_10200007	All Organisms → cellular organisms → Bacteria	1367	Open in IMG/M
3300005561\|Ga0066699_11174821	Not Available	527	Open in IMG/M
3300005568\|Ga0066703_10506341	Not Available	716	Open in IMG/M
3300005576\|Ga0066708_10850103	Not Available	571	Open in IMG/M
3300005598\|Ga0066706_10804044	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	741	Open in IMG/M
3300005617\|Ga0068859_101951888	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300005617\|Ga0068859_103069594	Not Available	509	Open in IMG/M
3300005719\|Ga0068861_101924601	Not Available	589	Open in IMG/M
3300005764\|Ga0066903_100940353	Not Available	1570	Open in IMG/M
3300005764\|Ga0066903_102971571	Not Available	919	Open in IMG/M
3300005841\|Ga0068863_100834550	Not Available	920	Open in IMG/M
3300005841\|Ga0068863_102724876	Not Available	503	Open in IMG/M
3300006844\|Ga0075428_100027139	All Organisms → cellular organisms → Bacteria → Proteobacteria	6339	Open in IMG/M
3300006846\|Ga0075430_101114961	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300006852\|Ga0075433_10851406	All Organisms → cellular organisms → Bacteria	796	Open in IMG/M
3300006852\|Ga0075433_10856406	Not Available	793	Open in IMG/M
3300006871\|Ga0075434_101015418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	843	Open in IMG/M
3300006881\|Ga0068865_102190846	Not Available	503	Open in IMG/M
3300006918\|Ga0079216_11283493	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	596	Open in IMG/M
3300007004\|Ga0079218_11487751	Not Available	732	Open in IMG/M
3300007004\|Ga0079218_12779720	Not Available	586	Open in IMG/M
3300007076\|Ga0075435_100772973	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	836	Open in IMG/M
3300009012\|Ga0066710_100546394	All Organisms → cellular organisms → Bacteria → Acidobacteria	1752	Open in IMG/M
3300009012\|Ga0066710_100579943	All Organisms → cellular organisms → Bacteria → Acidobacteria	1699	Open in IMG/M
3300009094\|Ga0111539_12783492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	567	Open in IMG/M
3300009137\|Ga0066709_101721978	All Organisms → cellular organisms → Bacteria	887	Open in IMG/M
3300009147\|Ga0114129_10126367	All Organisms → cellular organisms → Bacteria	3515	Open in IMG/M
3300009153\|Ga0105094_10937297	Not Available	512	Open in IMG/M
3300009156\|Ga0111538_13840365	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	520	Open in IMG/M
3300009162\|Ga0075423_12388538	Not Available	576	Open in IMG/M
3300009551\|Ga0105238_11211898	Not Available	779	Open in IMG/M
3300009553\|Ga0105249_10623876	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1134	Open in IMG/M
3300010043\|Ga0126380_10714950	Not Available	807	Open in IMG/M
3300010043\|Ga0126380_11244314	Not Available	644	Open in IMG/M
3300010359\|Ga0126376_11724234	Not Available	662	Open in IMG/M
3300010362\|Ga0126377_12914349	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	552	Open in IMG/M
3300010398\|Ga0126383_11188173	Not Available	853	Open in IMG/M
3300010399\|Ga0134127_11910349	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300010403\|Ga0134123_12575640	All Organisms → cellular organisms → Bacteria → Acidobacteria	575	Open in IMG/M
3300011269\|Ga0137392_10198854	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_2_66_4	1638	Open in IMG/M
3300011407\|Ga0137450_1127402	Not Available	502	Open in IMG/M
3300011440\|Ga0137433_1186144	Not Available	677	Open in IMG/M
3300012212\|Ga0150985_114931004	All Organisms → cellular organisms → Bacteria	2955	Open in IMG/M
3300012212\|Ga0150985_115122029	Not Available	1303	Open in IMG/M
3300012212\|Ga0150985_121842259	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1031	Open in IMG/M
3300012212\|Ga0150985_122311213	Not Available	2121	Open in IMG/M
3300012362\|Ga0137361_11204119	Not Available	680	Open in IMG/M
3300012469\|Ga0150984_103107751	Not Available	1089	Open in IMG/M
3300012899\|Ga0157299_10023811	All Organisms → cellular organisms → Bacteria	1188	Open in IMG/M
3300012927\|Ga0137416_10052641	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	2864	Open in IMG/M
3300012948\|Ga0126375_10103928	Not Available	1690	Open in IMG/M
3300012951\|Ga0164300_10568663	Not Available	662	Open in IMG/M
3300012957\|Ga0164303_11160431	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	562	Open in IMG/M
3300012971\|Ga0126369_10894096	All Organisms → cellular organisms → Bacteria	973	Open in IMG/M
3300012987\|Ga0164307_10233579	All Organisms → cellular organisms → Bacteria	1273	Open in IMG/M
3300012989\|Ga0164305_11939934	Not Available	536	Open in IMG/M
3300012989\|Ga0164305_12124957	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	515	Open in IMG/M
3300014326\|Ga0157380_10931506	Not Available	897	Open in IMG/M
3300015245\|Ga0137409_10576112	All Organisms → cellular organisms → Bacteria → Acidobacteria	954	Open in IMG/M
3300015371\|Ga0132258_10225089	All Organisms → cellular organisms → Bacteria	4566	Open in IMG/M
3300015371\|Ga0132258_10381454	All Organisms → cellular organisms → Bacteria	3496	Open in IMG/M
3300015371\|Ga0132258_11568039	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1663	Open in IMG/M
3300015371\|Ga0132258_11609645	All Organisms → cellular organisms → Bacteria	1639	Open in IMG/M
3300015371\|Ga0132258_12968770	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1177	Open in IMG/M
3300015371\|Ga0132258_13877589	Not Available	1017	Open in IMG/M
3300015372\|Ga0132256_102409267	Not Available	629	Open in IMG/M
3300015373\|Ga0132257_103025684	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	612	Open in IMG/M
3300015374\|Ga0132255_103786857	Not Available	643	Open in IMG/M
3300018027\|Ga0184605_10427124	All Organisms → cellular organisms → Bacteria → Acidobacteria	588	Open in IMG/M
3300018028\|Ga0184608_10490010	Not Available	526	Open in IMG/M
3300018061\|Ga0184619_10433927	Not Available	589	Open in IMG/M
3300018422\|Ga0190265_10766497	Not Available	1087	Open in IMG/M
3300018422\|Ga0190265_13470192	Not Available	526	Open in IMG/M
3300018429\|Ga0190272_10086834	Not Available	1960	Open in IMG/M
3300018432\|Ga0190275_11671701	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	715	Open in IMG/M
3300018469\|Ga0190270_11510626	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	721	Open in IMG/M
3300018481\|Ga0190271_11345462	Not Available	834	Open in IMG/M
3300019362\|Ga0173479_10091356	All Organisms → cellular organisms → Bacteria → Proteobacteria	1107	Open in IMG/M
3300021078\|Ga0210381_10284619	All Organisms → cellular organisms → Bacteria → Acidobacteria	594	Open in IMG/M
3300021339\|Ga0193706_1004013	All Organisms → cellular organisms → Bacteria → Acidobacteria	5782	Open in IMG/M
3300022756\|Ga0222622_10647924	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	765	Open in IMG/M
3300025898\|Ga0207692_10460570	All Organisms → cellular organisms → Bacteria	802	Open in IMG/M
3300025903\|Ga0207680_11256371	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300025914\|Ga0207671_10324613	Not Available	1218	Open in IMG/M
3300025916\|Ga0207663_10295598	All Organisms → cellular organisms → Bacteria	1208	Open in IMG/M
3300025923\|Ga0207681_10124653	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1895	Open in IMG/M
3300025924\|Ga0207694_11852369	Not Available	506	Open in IMG/M
3300025930\|Ga0207701_10053233	All Organisms → cellular organisms → Bacteria → Acidobacteria	3716	Open in IMG/M
3300025945\|Ga0207679_10886701	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	816	Open in IMG/M
3300026320\|Ga0209131_1332917	Not Available	564	Open in IMG/M
3300027880\|Ga0209481_10114912	Not Available	1309	Open in IMG/M
3300028536\|Ga0137415_10081398	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	3096	Open in IMG/M
3300028768\|Ga0307280_10343080	Not Available	550	Open in IMG/M
3300028799\|Ga0307284_10215917	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300031058\|Ga0308189_10212613	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	708	Open in IMG/M
3300031716\|Ga0310813_11020062	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	755	Open in IMG/M
3300031852\|Ga0307410_11019929	Not Available	714	Open in IMG/M
3300033412\|Ga0310810_10309708	All Organisms → cellular organisms → Bacteria	1690	Open in IMG/M
3300034257\|Ga0370495_0022069	All Organisms → cellular organisms → Bacteria	1896	Open in IMG/M
3300034257\|Ga0370495_0030469	All Organisms → cellular organisms → Bacteria → Acidobacteria	1617	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	64.93%
Host-Associated	Host-Associated	34.33%
Engineered	Engineered	0.75%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	58.96%
Plants	Host-Associated → Plants	33.58%
Aquatic	Environmental → Aquatic	5.97%
Human	Host-Associated → Human	0.75%
Solid Waste	Engineered → Solid Waste	0.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	58.96%
Rhizoplane	Host-Associated → Plants → Rhizoplane	17.16%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.42%
Sediment	Environmental → Aquatic → Sediment	4.48%
Freshwater	Environmental → Aquatic → Freshwater	1.49%
Digestive System	Host-Associated → Human → Digestive System	0.75%
Grass	Engineered → Solid Waste → Grass	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.01%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.69%
Loam	Environmental → Terrestrial → Soil → Loam	10.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	8.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.21%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.48%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.73%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.49%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.49%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.75%
Composting	Engineered → Solid Waste → Grass → Composting	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.12%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	14.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	8.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.21%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.46%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.99%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.49%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.49%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.75%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.18%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	11.19%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.21%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.22%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.73%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.73%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.99%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.99%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.99%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.99%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.24%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.24%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.24%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.49%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.49%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.49%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.49%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.49%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.75%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.75%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.75%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.75%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.75%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.75%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.75%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.75%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.75%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459016	Litter degradation ZMR2	Engineered	Open in IMG/M
3300000881	Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004799	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009153	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011407	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT454_2	Environmental	Open in IMG/M
3300011440	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT840_2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021339	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c1	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300034257	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2ZMR_05397560	2170459016	Switchgrass, Maize And Mischanthus Litter	DRSANIREGIVEQARLSKDFDIAAAWNEVEELDESINKRVGDARVPR
JGI10215J12807_10409912	3300000881	Soil	VITPDERAQLIEDIRWSTASRERIVERASADKEFDIAAAWETVEDLDRSIYTRILRARSK
JGI10214J12806_104435311	3300000891	Soil	QMLCLEIQMTSDERAQLIEDIRRSNVKRERIIEHASADESFDLAAAWETLDELDRSINERLVKARVDN*
JGI1027J12803_1086672972	3300000955	Soil	MTSDERAQLVEDIQRSAKIREGIVEQARLNKEFDLTAAWEELDELDKSINARVVESRVLP
JGI10216J12902_1008281651	3300000956	Soil	MHMNADERAQLVEDIQRSAHFRERIVEQARVDKEFDIAAAWEELDELDNSINERVVKARKQAREAR*
JGI10216J12902_1036527071	3300000956	Soil	MNPDERAQLIEDIRRSTASRERIVERASADKEFDIAAAWETVEDLDRSIYTRILRARSK*
JGI10216J12902_1131738012	3300000956	Soil	LNHMIPDGRAQLIEDIRRSTASRERIVERGSADKAFDIAAAWETVEDLDRSIYTRILKARSK*
JGI10216J12902_1161988003	3300000956	Soil	RAQLIEDIDRSANIREGIVEQARLSKEFDIAAAWQELDELDASIASRVNASLSRGDE*
Ga0062593_1027418922	3300004114	Soil	MTSDERAQLVEDIQRSAKIREGIVEQARLDKAFDLIAAWQELDELDQSIDARVAKSRLSE
Ga0062590_1028965621	3300004157	Soil	MDADERAQLIEDIRRSASMRDDIVEHARRDEDFDIAAAWETLDELDQSINKRVMKARLTK
Ga0063356_1028287302	3300004463	Arabidopsis Thaliana Rhizosphere	LIEDIRRSTASRERIVERASADKEFDIAAAWETVEDLDRSIYTRILRARSK*
Ga0063356_1039670461	3300004463	Arabidopsis Thaliana Rhizosphere	MTSDERAQLIEDIRRSTSVRERIIEQAQADEQFDLAAAWETLEELDASINARVVKSRGKQ
Ga0063356_1047388931	3300004463	Arabidopsis Thaliana Rhizosphere	MTSDERAQLIEDIRRSNVKRGRIIEQAGADESFDLAAAWETLDELDRSINDRVVKARAGK
Ga0063356_1065148641	3300004463	Arabidopsis Thaliana Rhizosphere	MTSDERAQLIEDIRRSASMREHIVEQASMDTEFDIAAAWETLDELDHSINTRVIEVRSGIKDADKS*
Ga0062592_1003239141	3300004480	Soil	MTSEERAQLIEDIRRSTSMRAHIIEQAGADEDFDISAAWETLEELDQSISRRVVKARLKE
Ga0062592_1017425801	3300004480	Soil	MTSEERAQLIEDIRRSASIREHIIEQASVDKEFDIAAAWETLDELDQSINQRVEQARLP*
Ga0062592_1024424852	3300004480	Soil	MNTDERAQLIEDIRRSTASRERIVERASADKEFDIAAAWETVEDLDRSIYTRILRARSK*
Ga0058863_107821661	3300004799	Host-Associated	VRVLNVKILGMTPDERAQLIEDINRSASIRVGIVEQARISKEFDIAAAWQGLEELDATINKRVVKARSRG*
Ga0066674_103330751	3300005166	Soil	DERAQLIEDIRRSAAMRERIIEQASADKEFDIAAAWETLDELDESIKQRVIKARLKD*
Ga0066675_110555601	3300005187	Soil	PTIESAFLFPWDTPMTSDERAQLIEDIRRAAKVRERIVDQARLDKAFDIAAAWEELEALDQSINQRVIKSRQKK*
Ga0065705_105852882	3300005294	Switchgrass Rhizosphere	MTSEERAQLIEDIRRSTSMRAHIIEQASADEDFDISAAWETLEELDQSINERVVKARLKE
Ga0065705_110654061	3300005294	Switchgrass Rhizosphere	MTPDERAQLIEDIRRSTASRERIVERASADKEFDIAAAWETVEDLDRSIYTRILRARSK*
Ga0066388_1048508272	3300005332	Tropical Forest Soil	MTPEERAQLIEDIDRSANIREGIVGQARLSKQFDIAAAWQEVEELDRSINERVVKARRRD
Ga0066388_1058331742	3300005332	Tropical Forest Soil	MTPDERAQLIEDIDRSANIREGIVGQARLSKEFDIAAAWQELEELDRSISERVAKARRDDS*
Ga0070682_1003280522	3300005337	Corn Rhizosphere	VRVLNVKILGMTPDERAQLIEDINRSASIRVGIVEQARISKEFDIAAAWQELEELDATINKRVVKARSED*
Ga0070710_105796151	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MVSMTSDERAQLIEDIDRSATIREGIVTQARLSKQFDIAAAWQQLDELDSSINKRLGKPRSGG*
Ga0070711_1005074503	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	EDIDRSATIREGIVTQARLSKQFDIAAAWQQLDELDSSINKRLGKPRSGG*
Ga0070705_1009325212	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MTPDERAQLIEDIRRSALMREHIIEQAGADKQFDIAAAWETLDELDQSINTRVKKARLQE
Ga0070685_115515421	3300005466	Switchgrass Rhizosphere	LRRDETRNVSRAFFVWCHMTSDERAQLVEDIQRSAKIREGIVEQARLDKAFDLIAAWQELDELDQSIDARVAKSRLSE*
Ga0070698_1004537263	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MTSDERAQLIEDIRRSASMREHIVEQASLDTEFDIAAEWETLDELDQSINTRVIEARSGIKDADKS*
Ga0068853_1011488001	3300005539	Corn Rhizosphere	VLNVKILGMTPDERAQLIEDINRSASIRVGIVEQARISKEFDIAAAWQGLEELDATINKRVVKARSRG*
Ga0070704_1007208633	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MTPDERAQLIEDIRRSTVSREQIVERASTDKEFDIAAAWETVEELDKSIYKRILKARSK*
Ga0070704_1011501211	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MTSEERAQLIEDIRRSTSMRAHIIEQASADEDFDISAAWETLEELDQSINRRVVKARSKE
Ga0066695_102685651	3300005553	Soil	MTSDERAQLIEDIRRSTAMREHIIEQASADKEFDIAAAWETLDELDESIKQRVIKARLKD
Ga0066698_102000072	3300005558	Soil	MTSDERAQLIEDIRRSAAMRERIIEQASADKEFDIAAAWETLDELDESIKQRVIKARLKD
Ga0066699_111748211	3300005561	Soil	GMTSDERAQLIEDIDRSANIREGIVGQARLSKQFDIVAAWRELEELDASINDRVAEARTRK*
Ga0066703_105063411	3300005568	Soil	LIVQPTIESAFLFPWDTPMTSDERAQLIEDIRRAAKVRERIVDQARLDKAFDIAAAWEELEALDQSINQRVIKSRQKK*
Ga0066708_108501031	3300005576	Soil	TPMTSDERAQLIEDIRRAAKVRERIVDQARLDKAFDIAAAWEELEALDQSINQRVIKSRQKK*
Ga0066706_108040441	3300005598	Soil	MTSDERAQLIEDIRRSAAMREHIIEQASADKEFDIAAAWETLDELDESIKQRVIKARLKD
Ga0068859_1019518882	3300005617	Switchgrass Rhizosphere	MHMTAMTSEERAQLIEDIRRSASVRQHIIEQASLDKEFDIAAAWNTLDELDRSINERVERSRSEE*
Ga0068859_1030695942	3300005617	Switchgrass Rhizosphere	EEAAAMTADERAQLVEDIQRSAKIREGIVEQARLDQQFDLIAAWEELDGLDESINARVVKSRLSE*
Ga0068861_1019246013	3300005719	Switchgrass Rhizosphere	MTSEERAQLIEDIRRSTSMRAHIIEQAGADEDFDISAAWETLEELDQSISRRVVK
Ga0066903_1009403532	3300005764	Tropical Forest Soil	MTPDERAQLIEDIQRSAKFRESVVDQARMDKQFDIAAAWEELDQLDKSITDRIVKERDR*
Ga0066903_1029715712	3300005764	Tropical Forest Soil	MTPDERAQLIEDIDRSANIREGIVGQARLSKAFDIAAAWRELEELDASINKRVAKARSEH
Ga0068863_1008345501	3300005841	Switchgrass Rhizosphere	MTSDERAQLVEDIQRSAKIREGIVEQARLDKAFDLIAAWQELDELDQSIDARVAKSRLS
Ga0068863_1027248761	3300005841	Switchgrass Rhizosphere	MPMTSEERAQLIEDIRRSASVRQQIIEQASLDKEFDIAAAWTTLDELDRSINQRVGESRSRG*
Ga0075428_1000271398	3300006844	Populus Rhizosphere	MTPDERAQLIEDIRRSTASRERIVERASADKEFDIAAAWETVEELDRSIYTRILRARSK*
Ga0075430_1011149612	3300006846	Populus Rhizosphere	MTPDERAQLIEDIRRSTASRERIVERASADKEFDIAAAWETVEDLDRSIYTRILKARSK*
Ga0075433_108514063	3300006852	Populus Rhizosphere	MTSEERAQLIEDIDRSANIREGIVGQARLSKDFDIAAAWQELDELDASINERVAKARRDDR*
Ga0075433_108564062	3300006852	Populus Rhizosphere	MTSDERAQLIEDIRRSNSMRERIVEQAVADKTFDIAAAWETLDELERSINARVVSSRLNK
Ga0075434_1010154182	3300006871	Populus Rhizosphere	MTSEERAQLIEDIDRSANIREGIVGQARLSKDFDIAAAWQELEELDRNINERVVKARSGY
Ga0068865_1021908462	3300006881	Miscanthus Rhizosphere	RAFFVWCHMTSDERAQLVEDIQRSAKIREGIVEQARLDKAFDLIAAWQELDELDQSIDARVAKSRLSE*
Ga0079216_112834932	3300006918	Agricultural Soil	QSNPAFSLWIIMTSDERAQLIEDIRRSTSMRERILEQASADEQFDIAAAWETLEELEKSINARVPKSRVKK*
Ga0079218_114877513	3300007004	Agricultural Soil	LQANQPLFADHMTPDERAQLIEDIRRSTTSRERIVERASADKEFDISAAWETVEDLDRSIYTRILRARSK*
Ga0079218_127797202	3300007004	Agricultural Soil	MTSDERAQLIEDIRRSTSMRERILEQASADEEFDLAAAWETLEELDKSINTRVPKSRVKK
Ga0075435_1007729731	3300007076	Populus Rhizosphere	SDERAQLIEDIDRSANIREGIVGQARLSKDFDIAAAWRELDELDASINERVAKARRGD*
Ga0066710_1005463944	3300009012	Grasslands Soil	MTSDERAQLIEDIQRAAKVRERIVEQARLDKAFDIAAAWEELEALDQSINQRVIKSRLKK
Ga0066710_1005799434	3300009012	Grasslands Soil	MTSDERAQLIEDIQRAAKVRERMVEQARLDKAFDIAAAWEELETLDLSINQRVIKSRLKK
Ga0111539_127834922	3300009094	Populus Rhizosphere	MTYEERAQLIEDIDRSANIREGIVGQARLSKDFDIAAAWQELDELDASINERVAKARRDDR*
Ga0066709_1017219783	3300009137	Grasslands Soil	DTPMTSDERAQLIEDIRRAAKVRERIVDQARLDKAFDIAAAWEELEALDQSINQRVIKSRLKK*
Ga0114129_101263674	3300009147	Populus Rhizosphere	MTSDERAQLIEDIRRSNSMRERIVEQAVADKTFDIAAAWETLDELERSINARVRKLTTQ*
Ga0105094_109372971	3300009153	Freshwater Sediment	MTSEERAQLIEDIQRSSTFRARIVEQARLDHMFDIAAAWEELDELDRSINERVIKSRLKN
Ga0111538_138403651	3300009156	Populus Rhizosphere	MTADERAQLVEDIQRSAKIREGIVEQARLSQKFDLIAAWEELDKLDKSINARVVKFRPSE
Ga0075423_123885381	3300009162	Populus Rhizosphere	MVGMTSDERAQLIEDIDRSANVREGIVAQARLSKQFDIAAAWQQLEELDASIDKRLVKARSGD*
Ga0105238_112118983	3300009551	Corn Rhizosphere	MTSDERAQLIEDIDRSATIREGIVTQARLSKQFDIAAAWQQLDELDSSINKRLGK
Ga0105249_106238762	3300009553	Switchgrass Rhizosphere	MTPDERAQLIEDIDRSANIREGIVGQARLSKDFDIAAAWRELDELDASIN*
Ga0126380_107149503	3300010043	Tropical Forest Soil	MTPEERAQLIEDIDRSANIREGIVGQARLSKEFDIAAAWQELEELDRSINERVVKARRRD
Ga0126380_112443142	3300010043	Tropical Forest Soil	EEIAFYIVRANDRMVGMTSDERAQLIEDIDRSANIRAGIVGQARLSKNFDIAAAWQDLEELDRSINERVVKARSGR*
Ga0126376_117242342	3300010359	Tropical Forest Soil	MVSMTPDERAQLIEDIDRSANIREGIVGQARLSKAFDIAAAWRELEELDASINNAVAKARSEH*
Ga0126377_129143491	3300010362	Tropical Forest Soil	MTPDQRAQLIEDIDRSANIREGIVGQARLSKDFDIAAAWQDLEELDRSINERVVKARSGR
Ga0126383_111881732	3300010398	Tropical Forest Soil	MVRMTSDERAQLIEDIDRSANIREGIVGQARLSKAFDIAAAWRELEELDASINKRVAKARSEH*
Ga0134127_119103491	3300010399	Terrestrial Soil	KAMTSEERAQLIEDIRRSTSIREHIVEQASTDKEFDIAAAWETLDELDQSINQRVAESRVNE*
Ga0134123_125756402	3300010403	Terrestrial Soil	MTSDERAQLIEDIRRSASIREQIVEQASVDKEFDIAAAWEMRHELDKSIDARIVKAR*
Ga0137392_101988542	3300011269	Vadose Zone Soil	MTADERAQLIEDIDRSANIREGIVEQARLSKAFDIAAAWEELDELDASINRRVVKARLPL
Ga0137450_11274022	3300011407	Soil	MTSDERAQLIEDIRRSALMRQHIIEQASLDQAFDIAAAWETLDELDQPIGNRVIKSRLQE
Ga0137433_11861441	3300011440	Soil	MTSDERAQLIEDIRRSASMREHIAEHAGADKEFDITAAWETLNELDQSINARVVKER*
Ga0150985_1149310044	3300012212	Avena Fatua Rhizosphere	MTSDERAQLVEDIKRSASMRERIYEQARLDNQFDLAAAWETLDELDKSINARVVKARFKE
Ga0150985_1151220294	3300012212	Avena Fatua Rhizosphere	MNADERAQLLEDIKRSSTIRERIYEQARLDPQFDIAAAWTTLDELDESIHERVISSRVDE
Ga0150985_1218422591	3300012212	Avena Fatua Rhizosphere	MNADERAQLLEDIKRSSTIRERIYEQARLDPEFDIAAAWRTLDELDESIHERVNISQVDE
Ga0150985_1223112132	3300012212	Avena Fatua Rhizosphere	MKAYDGTMTSDERAQLIEDIDRSAGMRQRIVDQARLSKQFDLAAAWEELVQFDASINTRIKKSHAPPNR*
Ga0137361_112041192	3300012362	Vadose Zone Soil	MTSDERAQLIEDVQRAAKIRERIVDQARLDKAFDIAAAWQELEALDQSINQRVIKSRLKK
Ga0150984_1031077511	3300012469	Avena Fatua Rhizosphere	MNADERAQLLEDIKRSSTIRERIYEQARLDPQFDIAAAWTTLDELDESIHERV
Ga0157299_100238113	3300012899	Soil	LIEDIQRSATFRAGIVEQARMDKRFDIAAAWEELEDLDASIALRVKQARTKH*
Ga0137416_100526412	3300012927	Vadose Zone Soil	MTSEERAQLIEDIRRSASMREHIIEQASVDKEFDIAAWETLDELDQSINQRVVKARSKE*
Ga0126375_101039281	3300012948	Tropical Forest Soil	QLIEDIDRSANIREGIVGQARLSKQFDIAAAWQEVEELDRSINERVVKARRRD*
Ga0164300_105686633	3300012951	Soil	MTSEERAQLIEDIDRSATIREGIVTQARLSKQFDIAAAWQQLDELDSSINKRLGKPRSGG
Ga0164303_111604312	3300012957	Soil	MTSDERAQLIEDIDRSANIREGIVGQARLSKEFDIAAAWQELEELDASINERLVKARRGD
Ga0126369_108940962	3300012971	Tropical Forest Soil	MTSDERAQLIEDIDRSANIRKGIGEQARLSNKFDIAAAWQDLDELDASINERVAKSRRGG
Ga0164307_102335793	3300012987	Soil	MTSDERAQLIEDIDRSATIREGIVTQARLSKQFDIAAAWQQLDELDSSINKRLGKARSGA
Ga0164305_119399342	3300012989	Soil	MVYMTSDERAQLIEDIDRSANIRAGIVGQARLSKAFDIAAAWQDLEGLERRIN*
Ga0164305_121249572	3300012989	Soil	MTSDERAQLIEDIDRSANIREGIVEQARLSKDFDIAAAWEELEELDTSINNRIVNARSGD
Ga0157380_109315063	3300014326	Switchgrass Rhizosphere	MTPDQRAQLIEDIRRSTVNREQIVERASADKEFDIVAAWETVEELDRSIL
Ga0137409_105761122	3300015245	Vadose Zone Soil	MTSDERAQLIEDIRRSAFMREHIIEQASVDKEFDIAAAWETLDELDQSINQRVVKARSKE
Ga0132258_102250894	3300015371	Arabidopsis Rhizosphere	MTAEERAQLIEDIDRSANIREGIVGQARLSKDFDIAAAWQELDELDASINERIANARRDDS*
Ga0132258_103814544	3300015371	Arabidopsis Rhizosphere	MTADERAQLIEDIRRSASMRDHIIEQATADKEFDIAAAWETLDELDQSINQRVVKARS*
Ga0132258_115680394	3300015371	Arabidopsis Rhizosphere	LVRVFNDKVLSMTSDERAQLIEDIDRSANIREGIVGQARLSKEFDIAAAWQELEELDASINKRVVKARSGN*
Ga0132258_116096452	3300015371	Arabidopsis Rhizosphere	MTSDERAQLIEDIDRSANIREGIVGQARLSKDFDIAAAWRELDELDASINERVVKARSGD
Ga0132258_129687702	3300015371	Arabidopsis Rhizosphere	MTSDERAQLIEDIRRSASIREHIIQQASADKEFDIAAAWETLDELDQSINQRVVKARSKE
Ga0132258_138775893	3300015371	Arabidopsis Rhizosphere	MTSDERAQLIEDIRRSASMREHIIEQATADKEFDIAAAWETLDDLDQSINQRVVNVRSKE
Ga0132256_1024092672	3300015372	Arabidopsis Rhizosphere	MTADERAQLIEDIRRSASMRDHIIEQATADKEFDIAAAWQELEELDASINKRVVKARSGN
Ga0132257_1030256842	3300015373	Arabidopsis Rhizosphere	VFNDKVLSMTSDERAQLIEDIDRSANIREGIVGQARLSKEFDIAAAWQELEELDASINKRVVKARSGN*
Ga0132255_1037868572	3300015374	Arabidopsis Rhizosphere	MTADERAQLIEDIRRSASMRDHIIEQATADKEFDIAAAWETLDDLDQSINQRVVKVRSKE
Ga0184605_104271241	3300018027	Groundwater Sediment	MNSDERAQLIEDIRRSTAMRERIIEQATADKSFDIAAAWETLEELDQSINQRVIKSRSKK
Ga0184608_104900102	3300018028	Groundwater Sediment	MTADERAQLIEDIRRSALMREHIIEQASVDKQFDIAAAWETLDELDQSINTRMKKSRLQE
Ga0184619_104339272	3300018061	Groundwater Sediment	MTADERAQLIEDIKRSTKLREHIIEQASLDKDFDIAAAWETIDELDQSINERMSELRSE
Ga0190265_107664972	3300018422	Soil	MTPEERAQLVEDIQRSATFRAHIVEQARLSKDFDIAAAFEELDELDASIHQRLIAARLKD
Ga0190265_134701921	3300018422	Soil	MVTLMTPDERAQLVEDIQRSATFRTHIVEQARLSKNFDIAAAWEPLAILDSSIGVRIVKARQERPKSSQY
Ga0190272_100868343	3300018429	Soil	SYPQDWPTITGVLLHMTSDERAQLIEDIRRSALMREHIIEQASGDKDFDISAAWETLEELDQSINTRVIKSRLQE
Ga0190275_116717012	3300018432	Soil	MNADERAQLIEDIRRSSVIREQIVERASADKQFDIAAAWETVEDLDRSINTRVATARSK
Ga0190270_115106261	3300018469	Soil	MTPDERAQLIEDIRRSTSMRERILEQATTDKDFDIAAAWETLDELDQSINTRMVEARPSR
Ga0190271_113454621	3300018481	Soil	SEQLVEDIRQSTSMRQLIVERATDDKDFDIAAAWENLEELDASINQRVIRARLKD
Ga0173479_100913562	3300019362	Soil	MTADERAQLVEDIQRSAKIREGIVEQARLSQKFDLIAAWEELDELDKSINARVVKFRPAE
Ga0210381_102846191	3300021078	Groundwater Sediment	MTSDERAQLIEDIRRSTSVRERIIEQAQADEQFDLAAAWETLDELDASINARVVKSRGKQ
Ga0193706_10040134	3300021339	Soil	MTSDERAQLIEDIRKSAKVRLDIIERAQLSEHFDIAAAWETLDVLDDSIEQRVVKARVKA
Ga0222622_106479241	3300022756	Groundwater Sediment	MTSDERAQLIEDIRRSNAMRSRIIEQATADKTFDIAAAWETIHELEQSINARVVKSRSKQ
Ga0207692_104605703	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MVSMTSDERAQLIEDIDRSATIREGIVTQARLSKQFDIAAAWQQLDELDSSINKRLGKPRSGG
Ga0207680_112563711	3300025903	Switchgrass Rhizosphere	MTSDERAQLVEDIQRSAKIREGIVEQARLDKAFDLIAAWQELDELDQSIDARVAKSR
Ga0207671_103246133	3300025914	Corn Rhizosphere	VRVLNVKILGMTPDERAQLIEDINRSASIRVGIVEQARISKEFDIAAAWQGLEELDATINKRVVKARSRG
Ga0207663_102955981	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	KMVSMTSDERAQLIEDIDRSATIREGIVTQARLSKQFDIAAAWQQLDELDSSINKRLGKPRSGG
Ga0207681_101246531	3300025923	Switchgrass Rhizosphere	MTSDERAQLIEDIDRSANIREGIVGQARLSKDFDIAAAWRELDELDASINERVAKARRGD
Ga0207694_118523692	3300025924	Corn Rhizosphere	VRVLNVKILGMTPDERAQLIEDINRSASIRVGIVEQARISKEFDIAAAWQGLEELDATINKRVVKARS
Ga0207701_100532333	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MTPDERAQLIEDIQRSATFRAGIVEQARMDKRFDIAAAWEELEDLDASIALRVKQARTKH
Ga0207679_108867011	3300025945	Corn Rhizosphere	MPMTAMTSEERAQLIEDIRRSASVRQHIIEQASLDKEFDIAAAWNTLDELDRSINERVERSRSEE
Ga0209131_13329172	3300026320	Grasslands Soil	MTSDERAQLIEDIRRSNAMRSRIIDQATADKTFDIAAAWETVHGLDESINARVVKSRSKQ
Ga0209481_101149122	3300027880	Populus Rhizosphere	MTPDERAQLIEDIRRSTASRERIVERASADKEFDIAAAWETVEELDRSIYTRILRARSK
Ga0137415_100813982	3300028536	Vadose Zone Soil	MTSEERAQLIEDIRRSASMREHIIEQASVDKEFDIAAAWETLDELDQSINQRVVKARSKE
Ga0307280_103430802	3300028768	Soil	MTPDERARLIEDIKRSAALRERIVDRARADHKFDIAAAWEDLEKLDDSIVSRVIMSRRRD
Ga0307284_102159172	3300028799	Soil	VTADERAQLVEDIRRSTSMRNHIIEQASIDKDFDIAAAWETLEALDRSINERVVKARSRKEH
Ga0308189_102126131	3300031058	Soil	MTSDERAQLVEDIRRSASIREHIAEQANADREFDIAAAWETLDELDRSIDERVTSSRSAE
Ga0310813_110200622	3300031716	Soil	MTSDERAQLVEDIQRSAKIREGIVEQARLNKEFDLTAAWEELDELDKSINARVVESRVLR
Ga0307410_110199292	3300031852	Rhizosphere	MTHEERAQLIEDIRRSTASRERIVERASADKQFDIAAAWETVEELDRSIYTRILRARSK
Ga0310810_103097082	3300033412	Soil	MTPDERAQLVEDIQRSAKFREGIVDQARMDKRFDIAAAWTELEELDQSINHRILSLRSTT
Ga0370495_0022069_1691_1867	3300034257	Untreated Peat Soil	MTSDERAQLIEDIRRSVSIRTHIIEQASVDKDFDVAAAWETLDELDQSIGSRVNKPGL
Ga0370495_0030469_64_246	3300034257	Untreated Peat Soil	MTSDERAQLIEDIRRSALMRQHIIEQASLDKAFDIAAAWETLDELDQSIGNRVIKSRLQE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F058784

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences