Metagenome / Metatranscriptome Family F059285

Basic Information
Family ID	F059285
Family Type	Metagenome / Metatranscriptome
Number of Sequences	134
Average Sequence Length	54 residues
Representative Sequence	MADFFGKLVVRSYAPKRRAVLLGTAALMAAFILYAAFELGRYDAGFRVVDSVRGAL
Number of Associated Samples	119
Number of Associated Scaffolds	134

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	84.73 %
% of genes near scaffold ends (potentially truncated)	97.01 %
% of genes from short scaffolds (< 2000 bps)	91.79 %
Associated GOLD sequencing projects	113
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Most Common Taxonomy
Group	Unclassified (61.940 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (17.164 % of family members)
Environment Ontology (ENVO)	Unclassified (20.896 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.209 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.62% β-sheet: 0.00% Coil/Unstructured: 52.38%
Feature Viewer

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Pfam ID	Name	% Frequency in 134 Family Scaffolds
PF03653	UPF0093	83.58
PF00293	NUDIX	7.46
PF00990	GGDEF	2.99
PF04340	DUF484	2.24
PF01032	FecCD	1.49
PF03544	TonB_C	0.75
PF02153	PDH_N	0.75

COG ID	Name	Functional Category	% Frequency in 134 Family Scaffolds
COG1981	Protoporphyrinogen oxidase HemJ (unrelated to HemG or HemY)	Coenzyme transport and metabolism [H]	83.58
COG3159	Uncharacterized conserved protein YigA, DUF484 family	Function unknown [S]	2.24
COG0287	Prephenate dehydrogenase	Amino acid transport and metabolism [E]	0.75
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.75

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.94 %
All Organisms	root	All Organisms	38.06 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.94 %
cellular organisms	root	All Organisms → cellular organisms	38.06 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.94 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	38.06 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	34.33 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	29.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.94 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	9.70 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	2.99 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.94 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	9.70 %
Ectothiorhodospiraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae	2.99 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.94 %
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	8.96 %
Alkalilimnicola	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Alkalilimnicola	1.49 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.75 %
unclassified Steroidobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.94 %
Steroidobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	8.96 %
Alkalilimnicola ehrlichii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Alkalilimnicola → Alkalilimnicola ehrlichii	1.49 %
Steroidobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	0.75 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.75 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459010\|GIO7OMY01DD82Q	Not Available	503	Open in IMG/M
3300001546\|JGI12659J15293_10133585	Not Available	541	Open in IMG/M
3300002245\|JGIcombinedJ26739_100228569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1751	Open in IMG/M
3300003220\|JGI26342J46808_1026724	Not Available	571	Open in IMG/M
3300004080\|Ga0062385_10498538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Alkalilimnicola → Alkalilimnicola ehrlichii	750	Open in IMG/M
3300004080\|Ga0062385_11266882	Not Available	506	Open in IMG/M
3300004082\|Ga0062384_100603513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Alkalilimnicola → Alkalilimnicola ehrlichii	743	Open in IMG/M
3300004092\|Ga0062389_101574832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	840	Open in IMG/M
3300004092\|Ga0062389_101864999	Not Available	780	Open in IMG/M
3300004152\|Ga0062386_101541714	Not Available	554	Open in IMG/M
3300004635\|Ga0062388_101109942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae	777	Open in IMG/M
3300005541\|Ga0070733_10649846	Not Available	708	Open in IMG/M
3300005546\|Ga0070696_101332892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae	610	Open in IMG/M
3300005712\|Ga0070764_10407400	Not Available	804	Open in IMG/M
3300005993\|Ga0080027_10408137	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	548	Open in IMG/M
3300006041\|Ga0075023_100073102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1129	Open in IMG/M
3300006050\|Ga0075028_100139078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1273	Open in IMG/M
3300006052\|Ga0075029_101320295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	507	Open in IMG/M
3300006173\|Ga0070716_100266356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1175	Open in IMG/M
3300006176\|Ga0070765_102202175	Not Available	514	Open in IMG/M
3300006638\|Ga0075522_10601354	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300006893\|Ga0073928_10932976	Not Available	594	Open in IMG/M
3300009500\|Ga0116229_10755370	Not Available	791	Open in IMG/M
3300009500\|Ga0116229_11345311	Not Available	567	Open in IMG/M
3300009520\|Ga0116214_1178718	Not Available	795	Open in IMG/M
3300009522\|Ga0116218_1245314	Not Available	805	Open in IMG/M
3300009628\|Ga0116125_1193653	Not Available	576	Open in IMG/M
3300009635\|Ga0116117_1106848	Not Available	703	Open in IMG/M
3300009651\|Ga0105859_1167199	Not Available	630	Open in IMG/M
3300009661\|Ga0105858_1113623	Not Available	738	Open in IMG/M
3300009697\|Ga0116231_10502659	Not Available	664	Open in IMG/M
3300009701\|Ga0116228_10639242	Not Available	720	Open in IMG/M
3300009709\|Ga0116227_10085595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2615	Open in IMG/M
3300009709\|Ga0116227_10418251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1021	Open in IMG/M
3300009759\|Ga0116101_1001655	All Organisms → cellular organisms → Bacteria → Proteobacteria	3115	Open in IMG/M
3300009787\|Ga0116226_11669455	Not Available	586	Open in IMG/M
3300009839\|Ga0116223_10086772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1994	Open in IMG/M
3300010339\|Ga0074046_10773989	Not Available	562	Open in IMG/M
3300011270\|Ga0137391_11409962	Not Available	543	Open in IMG/M
3300012203\|Ga0137399_10591720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	932	Open in IMG/M
3300012209\|Ga0137379_11449116	Not Available	589	Open in IMG/M
3300012683\|Ga0137398_10158742	All Organisms → cellular organisms → Bacteria	1472	Open in IMG/M
3300012683\|Ga0137398_10306743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1068	Open in IMG/M
3300012924\|Ga0137413_11355396	Not Available	573	Open in IMG/M
3300012927\|Ga0137416_11900918	Not Available	545	Open in IMG/M
3300012929\|Ga0137404_10351126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1291	Open in IMG/M
3300014156\|Ga0181518_10239880	Not Available	925	Open in IMG/M
3300014164\|Ga0181532_10650499	Not Available	570	Open in IMG/M
3300014200\|Ga0181526_10644302	Not Available	669	Open in IMG/M
3300015264\|Ga0137403_10006947	All Organisms → cellular organisms → Bacteria → Proteobacteria	12873	Open in IMG/M
3300017933\|Ga0187801_10061314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1382	Open in IMG/M
3300017943\|Ga0187819_10229232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1090	Open in IMG/M
3300018034\|Ga0187863_10398171	Not Available	767	Open in IMG/M
3300018037\|Ga0187883_10290029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	836	Open in IMG/M
3300018085\|Ga0187772_10390692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	967	Open in IMG/M
3300019999\|Ga0193718_1074073	Not Available	725	Open in IMG/M
3300020004\|Ga0193755_1152450	Not Available	700	Open in IMG/M
3300020034\|Ga0193753_10242666	Not Available	804	Open in IMG/M
3300020199\|Ga0179592_10167590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1002	Open in IMG/M
3300020579\|Ga0210407_10760956	Not Available	749	Open in IMG/M
3300020580\|Ga0210403_10677760	Not Available	827	Open in IMG/M
3300020581\|Ga0210399_10544623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	963	Open in IMG/M
3300020582\|Ga0210395_10682015	Not Available	769	Open in IMG/M
3300021086\|Ga0179596_10469481	Not Available	637	Open in IMG/M
3300021171\|Ga0210405_10068158	All Organisms → cellular organisms → Bacteria	2807	Open in IMG/M
3300021180\|Ga0210396_10737296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	849	Open in IMG/M
3300021401\|Ga0210393_11427360	Not Available	552	Open in IMG/M
3300021402\|Ga0210385_10733994	Not Available	756	Open in IMG/M
3300021404\|Ga0210389_11144118	Not Available	600	Open in IMG/M
3300021406\|Ga0210386_11467674	Not Available	569	Open in IMG/M
3300021420\|Ga0210394_10597834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	970	Open in IMG/M
3300021420\|Ga0210394_11283733	Not Available	626	Open in IMG/M
3300021420\|Ga0210394_11557009	Not Available	557	Open in IMG/M
3300021433\|Ga0210391_11172279	Not Available	595	Open in IMG/M
3300021474\|Ga0210390_11100515	Not Available	645	Open in IMG/M
3300021475\|Ga0210392_10232215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1300	Open in IMG/M
3300021477\|Ga0210398_10258578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1419	Open in IMG/M
3300021477\|Ga0210398_10539576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	949	Open in IMG/M
3300021478\|Ga0210402_10506034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1122	Open in IMG/M
3300021478\|Ga0210402_11354684	Not Available	639	Open in IMG/M
3300021479\|Ga0210410_10241042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1621	Open in IMG/M
3300023088\|Ga0224555_1035348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2033	Open in IMG/M
3300025504\|Ga0208356_1022166	All Organisms → cellular organisms → Bacteria → Proteobacteria	1365	Open in IMG/M
3300025912\|Ga0207707_11621290	Not Available	509	Open in IMG/M
3300026374\|Ga0257146_1030256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	879	Open in IMG/M
3300026482\|Ga0257172_1055582	Not Available	725	Open in IMG/M
3300026557\|Ga0179587_10319519	All Organisms → cellular organisms → Bacteria	1003	Open in IMG/M
3300027505\|Ga0209218_1063893	Not Available	752	Open in IMG/M
3300027537\|Ga0209419_1080630	Not Available	644	Open in IMG/M
3300027559\|Ga0209222_1004159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	3195	Open in IMG/M
3300027559\|Ga0209222_1038222	Not Available	925	Open in IMG/M
3300027629\|Ga0209422_1079896	Not Available	766	Open in IMG/M
3300027651\|Ga0209217_1145713	Not Available	658	Open in IMG/M
3300027803\|Ga0209910_10007235	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	792	Open in IMG/M
3300027812\|Ga0209656_10209642	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	940	Open in IMG/M
3300027854\|Ga0209517_10455179	Not Available	707	Open in IMG/M
3300027867\|Ga0209167_10041698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2234	Open in IMG/M
3300027908\|Ga0209006_10826431	Not Available	749	Open in IMG/M
3300027908\|Ga0209006_10844536	All Organisms → cellular organisms → Bacteria → Proteobacteria	739	Open in IMG/M
3300027911\|Ga0209698_10222470	All Organisms → cellular organisms → Bacteria	1518	Open in IMG/M
3300028017\|Ga0265356_1012603	Not Available	927	Open in IMG/M
3300028021\|Ga0265352_1000181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1798	Open in IMG/M
3300028748\|Ga0302156_10320764	Not Available	690	Open in IMG/M
3300028765\|Ga0302198_10105682	All Organisms → cellular organisms → Bacteria → Proteobacteria	1528	Open in IMG/M
3300028783\|Ga0302279_10282714	Not Available	736	Open in IMG/M
3300028801\|Ga0302226_10396217	Not Available	578	Open in IMG/M
3300028808\|Ga0302228_10376572	Not Available	631	Open in IMG/M
3300028813\|Ga0302157_10258505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	969	Open in IMG/M
3300028867\|Ga0302146_10310499	Not Available	608	Open in IMG/M
3300029913\|Ga0311362_11255297	Not Available	544	Open in IMG/M
3300029920\|Ga0302142_1124159	Not Available	795	Open in IMG/M
3300029987\|Ga0311334_10673852	Not Available	844	Open in IMG/M
3300030056\|Ga0302181_10508901	Not Available	507	Open in IMG/M
3300030399\|Ga0311353_10043508	Not Available	4619	Open in IMG/M
3300030519\|Ga0302193_10210921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1078	Open in IMG/M
3300030580\|Ga0311355_11610182	Not Available	557	Open in IMG/M
3300030618\|Ga0311354_11931471	Not Available	509	Open in IMG/M
3300030737\|Ga0302310_10642672	Not Available	556	Open in IMG/M
3300030760\|Ga0265762_1089049	Not Available	671	Open in IMG/M
3300030906\|Ga0302314_11509496	Not Available	606	Open in IMG/M
3300031027\|Ga0302308_10531439	Not Available	687	Open in IMG/M
3300031057\|Ga0170834_104677120	Not Available	556	Open in IMG/M
3300031231\|Ga0170824_106473596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	985	Open in IMG/M
3300031231\|Ga0170824_113745194	Not Available	551	Open in IMG/M
3300031236\|Ga0302324_102420339	Not Available	644	Open in IMG/M
3300031525\|Ga0302326_12196119	Not Available	705	Open in IMG/M
3300031708\|Ga0310686_107631369	Not Available	559	Open in IMG/M
3300031708\|Ga0310686_115775334	Not Available	533	Open in IMG/M
3300031708\|Ga0310686_118692048	Not Available	637	Open in IMG/M
3300032180\|Ga0307471_102845013	Not Available	614	Open in IMG/M
3300033545\|Ga0316214_1050836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	601	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.54%
Host-Associated	Host-Associated	7.46%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	74.63%
Aquatic	Environmental → Aquatic	17.91%
Plants	Host-Associated → Plants	7.46%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.46%
Peat	Environmental → Terrestrial → Peat	17.16%
Freshwater	Environmental → Aquatic → Freshwater	14.18%
Peat Moss	Host-Associated → Plants → Peat Moss	5.97%
Sediment	Environmental → Aquatic → Sediment	2.99%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.75%
Roots	Host-Associated → Plants → Roots	0.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	41.79%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	17.16%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	14.18%
Loam	Environmental → Terrestrial → Soil → Loam	11.19%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	5.97%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.99%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.75%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.75%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.75%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.15%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.40%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	17.16%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	10.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.96%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	5.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.99%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.99%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.24%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.24%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.49%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.49%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.49%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.75%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.75%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.16%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.96%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	8.21%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.46%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	7.46%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	6.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.97%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	5.97%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.99%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.99%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.24%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.24%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.24%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.49%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.49%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.49%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.49%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	1.49%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.49%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.49%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.75%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.75%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.75%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.75%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.75%
Thawing Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost	0.75%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.75%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.75%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.75%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.75%
Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots	0.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.75%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
3300001546	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003220	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005993	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006638	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009500	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009628	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10	Environmental	Open in IMG/M
3300009635	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10	Environmental	Open in IMG/M
3300009651	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-063	Environmental	Open in IMG/M
3300009661	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-062	Environmental	Open in IMG/M
3300009697	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009701	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300009709	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009759	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10	Environmental	Open in IMG/M
3300009787	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fa - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300019999	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020034	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300023088	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 30-34	Environmental	Open in IMG/M
3300025504	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300026374	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-A	Environmental	Open in IMG/M
3300026482	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027505	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027537	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027559	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027629	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027803	Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 712S3S	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028017	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE4	Host-Associated	Open in IMG/M
3300028021	Soil microbial communities from Maridalen valley, Oslo, Norway - NSE5	Environmental	Open in IMG/M
3300028565	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_3	Environmental	Open in IMG/M
3300028748	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_2	Environmental	Open in IMG/M
3300028765	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_2	Environmental	Open in IMG/M
3300028783	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_3	Environmental	Open in IMG/M
3300028801	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_3	Environmental	Open in IMG/M
3300028808	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2	Environmental	Open in IMG/M
3300028813	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_3	Environmental	Open in IMG/M
3300028867	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E3_3	Environmental	Open in IMG/M
3300029913	III_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029920	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_3	Environmental	Open in IMG/M
3300029987	I_Fen_E3 coassembly	Environmental	Open in IMG/M
3300030056	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_3	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030519	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_3	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030737	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_2	Environmental	Open in IMG/M
3300030760	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030906	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3	Environmental	Open in IMG/M
3300031027	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_3	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031258	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_1	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033545	Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE4	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F62_02625560	2170459010	Grass Soil	MADYFGKLVVRSHAPRLRAVLLSLAVLIAAAVLYAAFELGRYDAGYRVVDSVRGALS
JGI12659J15293_101335852	3300001546	Forest Soil	MADNSGKLVVRSHTPKLRAVLMGLAVLLAAALLYGAFELGRYDAGFRVVDSVRGALIASSRIRKLE
JGIcombinedJ26739_1002285694	3300002245	Forest Soil	MADNSGKLVVRSHTPKLRAVLMGLAVLLAAALLYGAFELGRYDAGFRVVDSVRGALIASSRIRK
JGI26342J46808_10267242	3300003220	Bog Forest Soil	MAESFGKLVVRSYAPKRHAVLWGMAVLLAIGILYAAFELGRYDAGFRVVDSVRGALAA
Ga0062385_104985381	3300004080	Bog Forest Soil	MDMADSFGKLVVRSYAPKRRAVIWTLGLLLSAAILYSAFELGRYDAGFRVVDSVHGA
Ga0062385_112668821	3300004080	Bog Forest Soil	MANSFSKLVVRSHAPKRQAVLWGLGALLAIAILYAAFELGRYDAGFRV
Ga0062384_1006035131	3300004082	Bog Forest Soil	MDMADSFGKLVVRSYAPKRRAVIWTLGLLLSAAILYSAFELGRYDAGFRVVDSV
Ga0062389_1015748323	3300004092	Bog Forest Soil	MANSFSKLVVRSHAPKRQAVLWGLGALLAIAILYAAFELGRYDAGFRVVDSVRGAL
Ga0062389_1018649992	3300004092	Bog Forest Soil	MADSFGKLVVRPHAPRRRAVLLGLAVLGGLAVLYAAFELGRFDAGFRVVDSVRGALSASARIR
Ga0062386_1015417142	3300004152	Bog Forest Soil	MADLFGKLVVRSYAPRRRAVLLGSSALLAALILYAAFELGRYDAGFRVVDSVRGALSASA
Ga0062388_1011099421	3300004635	Bog Forest Soil	MADLFGKLVVRPHAPKRRAVLLGLAVLSGLAVLYAAFELGRYDAGFRV
Ga0070733_106498462	3300005541	Surface Soil	MADNPGKLVVRAHTPKLRAVLLGLAVLFAAALLYAMFELGRYEAGFRVVDSVRGALIASARIRSL
Ga0070696_1013328922	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MADYFGKLVFRPHSPRRRAVLLGAAALAAAAILYAAFELGRYDAGFRVVD
Ga0070764_104074002	3300005712	Soil	MDLFGKLVVRPHAPKRRAVLLGMAVACGLAILYATFELGRWDAGFRVVDSVRGALSASAR
Ga0080027_104081371	3300005993	Prmafrost Soil	MADSFGKLVVRPHTPKRRAVMIGLVVLAAAAALYAAFEIGRYEAGFRVV
Ga0075023_1000731021	3300006041	Watersheds	MAESLGKLVVRSYAPRQRAILLGVGACLALGLLYLAFELGRIDAGYRVVDSVRGAM
Ga0075028_1001390781	3300006050	Watersheds	MADSFGKLVVRSHSPRKRAIFLAALGLVAVILLYGMFELGRYDAGYRVVDAVRGALTASARQRDLETENARLS
Ga0075029_1013202952	3300006052	Watersheds	MADFFSKLVVRPYAPRRRALLIGAAVLLGAFVLYIAFELGRYDAGYRVIDSVRGALSTSARIRALE
Ga0070716_1002663561	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MADYFGKLVVRSHAPRLRAVLLSLAVLIAAAVLYAAFELGR
Ga0070765_1022021751	3300006176	Soil	MADSFGKLVVRSYAPKRRAVLWTLALLAAAAILYSAFELGRYDAGFRVVDSVRGALSASRRI
Ga0075522_106013541	3300006638	Arctic Peat Soil	MADYFGKLVVRAHTPKRRAVLIGLCALAVLSVLYAVFELGRYDAGFRVIDSVRGALS
Ga0073928_109329761	3300006893	Iron-Sulfur Acid Spring	MADSFGKLVIRNYAPRRRALLWSGAVLAALAVLYAVFELGRFDAG
Ga0116229_107553701	3300009500	Host-Associated	MADSFTRLVVRAYAPKRRALIGGAAVLLAMFILYAAFELGRYDAGFRVVDSVR
Ga0116229_113453111	3300009500	Host-Associated	MADFFGKLVVRAYASPKRRAWFLGSAGVFAALVLYGMFELGRYDAGYRVVD
Ga0116214_11787181	3300009520	Peatlands Soil	MADFFGKWVIRSYAPKRRAVLWGTAALLAVVLLYAAFELGRYDAGFRVVDSVRGA
Ga0116218_12453141	3300009522	Peatlands Soil	MADFFGKLVVRSYAPKRRAVLLGTAALMAAFILYAAFELGRYDAGFRVVDSVRGAL
Ga0116125_11936532	3300009628	Peatland	MADLFGKLVIRSYAPKRRGALLALAVLLAVVLLYGAFELGRYDAGFRVVDSVRGALSASARI
Ga0116117_11068482	3300009635	Peatland	MAVSFGKLVVRSYAPKRRALLLALFVLIGAASLYGAFELGRYDAGYRVIDSV
Ga0105859_11671992	3300009651	Permafrost Soil	MVDSFGKLVVRSHAPKRHAVLFIAAILSALGILYAAFEFGRYEAGFRVVDSVRGALSASARI
Ga0105858_11136231	3300009661	Permafrost Soil	MADTFGKLVVRAYAPKRRAALYTLAMLLIAGILYAAFELGRYDAGFRVVDSVRGALSASR
Ga0116231_105026592	3300009697	Host-Associated	MSRTDANLKARVTVMTDVLHKLLVRSHAPGRRAWLWGGMAALGLALLYGMFELGRYDAGFRVVDSVRGALSAS
Ga0116228_106392421	3300009701	Host-Associated	MADSFGKLVVRSHAPKRRVIAVSLIVLSALVLLYGAFELGRYDAHFRVIDSLRGALSASARIRT
Ga0116227_100855955	3300009709	Host-Associated	MADSFSRLVVRAYTPRRRALVWGAGVLIAMVILYAAFELGRYDAGFRVVDSVRGALS
Ga0116227_104182511	3300009709	Host-Associated	MADAFAKLVIRSYAPKRRALLWGGGVLLALFVLYAAFEFGRYDAGFRVVDSVRGAL
Ga0116101_10016551	3300009759	Peatland	MAVSFGKLVVRSYAPKRRAVLLVLFVLGGFGCIYGAFELGRYDAGYR
Ga0116226_100012611	3300009787	Host-Associated	MADLFGKLEVRLGQTRGRAWLIGGLVVGLVLLYGMFELGRYDAGFRV
Ga0116226_116694552	3300009787	Host-Associated	MTDLFGKLVVRSYAPKRRAWLLAGGAAGGLVLLYGIFELGRYDAGFRVVDSVRGALSA
Ga0116223_100867721	3300009839	Peatlands Soil	MADLFGKLVVRSYAPKRRAVLLAAAALLGAVVLYGAFELGRYDAGFRV
Ga0074046_107739891	3300010339	Bog Forest Soil	MADFFGKLVVRAHAPKRRAVLLGSAAALAAFILYAAFELGRYDAGFRVVDSVRGALAA
Ga0137391_114099621	3300011270	Vadose Zone Soil	MVDSFGKLVVRSHTPRRRAVLLGLAVLLTLGVLYAVFELGRYDAGFRVVDS
Ga0137399_105917201	3300012203	Vadose Zone Soil	MVDSFGKLVVRSHTPRRRAVLLGLAVLLTLGVLYAVFELGRYDAGFRVVDSVR
Ga0137379_114491161	3300012209	Vadose Zone Soil	MADFLGKLVVRSHAPRRRAVLLASSVLLAPVVIYGAFELGRYDAGFR
Ga0137398_101587424	3300012683	Vadose Zone Soil	MVDSFGNLVVRSHAPRRRAVLIGLAALLAVAILYTAFELGQYDAGFRVVDSVRGALSA
Ga0137398_103067433	3300012683	Vadose Zone Soil	MADSFGKLVVRAYAPKRRAVLWTLAGLLIGGILYAAFELGRYDAGYRVVDSVRGALSASR
Ga0137413_113553962	3300012924	Vadose Zone Soil	MVDSFGKLVVRSHTPRRRAVLLGLAVLLTLGVLYAVFELGRYDAGF
Ga0137416_119009181	3300012927	Vadose Zone Soil	MVDLFGKLVVRSYTPRRRAVLIGLAVLLALGVLYAAFELGRHDAGFRVVD
Ga0137404_103511263	3300012929	Vadose Zone Soil	MADSFGKLVVRAYAPKRRAVLWTLAGLLIGGILYAAFELGRYDAGYRVV
Ga0181518_102398802	3300014156	Bog	MADFFGKWVVRSYAPKRHAVLWGTAALLAVALLYAAFELGRYDAGFRVVDSVRGALAASARIRELE
Ga0181532_106504991	3300014164	Bog	MADFFGKWVVRSYAPKRHAVLWGTAVLLAVALLYGAFELGRYDAGFRVVDSVRGAL
Ga0181526_106443021	3300014200	Bog	MADLFGKLVVRSYAPRRRAVLLGLAALLTAVILYAAFELGRYDA
Ga0137403_1000694712	3300015264	Vadose Zone Soil	MVDSFSKLVVRPHTPRRRAVLLGLAVLLALGVLYAAFELGRYD
Ga0187801_100613141	3300017933	Freshwater Sediment	MADFFGKLVVRPHSPRRRAVLLGVAVLLAVLILYAAFELGR
Ga0187819_102292323	3300017943	Freshwater Sediment	MADSFDKLVVRPYAPRRRAVLIVVAVLLAIFILYAAFELGRYEA
Ga0187863_103981711	3300018034	Peatland	VASLGKLVVRSHTPRRQALLLGAALVGAMLILYAAFEIGRYDAGFRVVDSVRGA
Ga0187883_102900293	3300018037	Peatland	MADLFGKLVVRSHVPKRRAVLLAAAALLGAVVLYGAFELGRYDAGFRVVDSVRGALSASARI
Ga0187772_103906921	3300018085	Tropical Peatland	MADLLAKLVPRPYVPRRRTVLLASAALLALAVLYGAFELGRYDAGYRVVDSVRGALAASA
Ga0193718_10740731	3300019999	Soil	MADSFGKLVVRAYAPKRRAVLWTLAALLIAGILYTVFELGRYEAGFRVVDSV
Ga0193755_11524501	3300020004	Soil	MADSFSKLVVRSYTPKRRAMLWTLAVLFTVGILYSAFELGRYD
Ga0193753_102426663	3300020034	Soil	MADSFSKLVVRPHAPKRLAVLWTLGLLLAGTILYSAFELGRYDAGFRVVDSVRGALSASRRIRT
Ga0179592_101675901	3300020199	Vadose Zone Soil	MADSFGKLVVRSHAPKRHAVLLGLAVLLALAIVYAAFEFGRYDAGFRVVDSVRGALSASARI
Ga0210407_107609562	3300020579	Soil	MAESFGKLVVRPHAPKRRAVLMGLAVLSGLAILYAAFEVGRYD
Ga0210403_106777601	3300020580	Soil	MVDSFGKLVVRSYTPRRRAVLLAAAVLLALGVLYAAFEVGRYDAGFRVVDSVRGALSASARIRSLEK
Ga0210399_105446231	3300020581	Soil	MADSFGNLVVRSHAPKRRAVLLGAAVLLALAVLYAAFELGRYDAGFRVV
Ga0210395_106820151	3300020582	Soil	LADSLSKLVVRSYAPKRRAVLWTSAALLAGGILYAAFELGRYDAGFRVVDSVRGA
Ga0179596_104694812	3300021086	Vadose Zone Soil	MVDSFGKLVVRSHTPRRRAVLLGLAVLLTLGVLYAVFELGRYD
Ga0210405_100681585	3300021171	Soil	MADSSGKLVVRSYAPKRRAVLWTVAALLTSGILYAAFELGRYDAGFRVVDSVRGALAASARIRSLEA
Ga0210396_107372961	3300021180	Soil	MADSLSKLVVRPHAPKRVAALWTVGLLLAATILYTAFEFGRYEAGFRVVDSVR
Ga0210393_114273602	3300021401	Soil	MAESFSKLVVRPHAPKRLAALWALGLLLAGTILYTAFELGRYDAGF
Ga0210385_107339941	3300021402	Soil	MAESFGKLVVRPHAPRRLAALWTVGLLLAATILYTAFELGRYDAGFRVVDSVRGALS
Ga0210389_111441181	3300021404	Soil	LADSLSKLVVRSYAPKRRAVLWTSAALLAGGILYAAFELGRYDAGFRVVDSVRGALSASRRIRSL
Ga0210386_114676742	3300021406	Soil	LFGKLVVRPDAPKRRAVLLGLAVLSGLAVLYMTFEFGRYEAGFRVVDSVRGALSAS
Ga0210394_105978343	3300021420	Soil	MVDSFGKLVVRSHTPRRRAVLLGLAVLLALGVLYAVFELGRYDAGFRVVDSVRGAFSASARIRN
Ga0210394_112837332	3300021420	Soil	MADSFSKLVVRTYAPRRRAVLWTLAALLTAGILYAAFELGRYDAG
Ga0210394_115570092	3300021420	Soil	MAESSGKLVVRSYAPKRRAVLWGMAVLLAIGILYAAFELGRYDAGFRVVDSVRGA
Ga0210391_111722792	3300021433	Soil	MAESFGKLVVRSYAPKRRAVLWGMAVLLAIGILYAAFELGRYDAGFRVVDSVRGALAASA
Ga0210390_111005151	3300021474	Soil	MADSLSKLVVRPHAPKRVAALWTVGLLLAATILYTAFEFGRYEAGFRVV
Ga0210392_102322153	3300021475	Soil	MVDSFGKLVVRSYTPKRRAVLMGLAVLLALGVLYAAFELGRYDAGFRVVDSVRGALSASARIRN
Ga0210398_102585781	3300021477	Soil	LFGKLVVRPHAPKRRAVLLGLAVLSGLAVLYVTFEFGRYEA
Ga0210398_105395763	3300021477	Soil	MAESFSKLVVRPHSPKRLAALWTVGLLLAAAILYSAFELGRYDAGFRV
Ga0210402_105060343	3300021478	Soil	MVDSFGKLVVRPHTPKRRAVLLGLAVLSGLAILYAAFELG
Ga0210402_113546841	3300021478	Soil	MVDSFGKLVVRPHTPKRRAVLLGLAVLLALGVLYAAFEFGRYDAGFRVVDS
Ga0210410_102410421	3300021479	Soil	MADSFGNLVVRTHAPKRRAVLLGAAVLLALAVLYAAFELGRYDAGFRVVDSVRGAFSASARIRNL
Ga0224555_10353484	3300023088	Soil	MADLFGKLVVRSHVPKRRAVLLAAAALLGAVVLYGAFELGRYDAGFRVV
Ga0208356_10221664	3300025504	Arctic Peat Soil	MADSFGNLVVRTHAPKRRAVLLGAAVLLALAVLYAAFELGRYDAG
Ga0207707_116212901	3300025912	Corn Rhizosphere	MADYFGKLVFRPHSPRRRAVLLGAAALAAAAILYTAFELGRYDAGFRVVDSVRGALS
Ga0257146_10302563	3300026374	Soil	MADSFGKLVVRAYAPKRRAVLWTLAALLIAGILYSAFELGRYDAGFRVVDSVRGALSASRRIR
Ga0257172_10555821	3300026482	Soil	MVDSFGKLVVRSHTPRRRAVLLGLAVLLALGVLYAVFEFGRYDAGFRVVDSV
Ga0179587_103195193	3300026557	Vadose Zone Soil	MADSFSKLVVRSYTPKRRAILWTLAVLFTVGILYSAFELGRYDAGFRVVDSVR
Ga0209218_10638932	3300027505	Forest Soil	MADSLSKLVVRPHAPKRVAALWTVGLLLAATILYTAFEFGRYEAGFRVVDS
Ga0209419_10806302	3300027537	Forest Soil	MVDSFGKLVVRSYTPRRRAVLLAAAVLLALGVLYAAFEVGRYDAGF
Ga0209222_10041591	3300027559	Forest Soil	MADSLSKLVVRPHAPKRVAALWTVGLLLAATILYTAFEFGRYEAGFRVVDSV
Ga0209222_10382222	3300027559	Forest Soil	LFGKLVVRPHAPKRRAVLLGLALLSGLAVLYVTFEFGRYEAG
Ga0209422_10798961	3300027629	Forest Soil	MADSFDKLVVRTHAPKRRAVLLVVAVLLGAGVLYAAFELGRYDAGFRVVDSVRGAFSASARIRN
Ga0209217_11457132	3300027651	Forest Soil	MADLFGKLVVRSHAPRRRAIYLALAVLLAMSVLYGVFELGRYDAGFRVVDSVRGALSASSRIAKL
Ga0209910_100072351	3300027803	Thawing Permafrost	MAGKLIVRSHTPRRRAVLWGTAAVLGIGILYVAFELGRFDAGFRVVDSVRGA
Ga0209656_102096421	3300027812	Bog Forest Soil	MADFFDKLVVRPYAPRRRGILIVVAVLLAIFVLYAAFELGRYEAGFRVI
Ga0209517_104551792	3300027854	Peatlands Soil	MADSLGKLVVRSYAPKRHALLLATFVLIGLAGLYGAFELGRYDAGYRVIDSVR
Ga0209167_100416984	3300027867	Surface Soil	MVDSFSKLVVRPHTPRRRAVLLGLAVLLALGVLYAA
Ga0209006_108264313	3300027908	Forest Soil	MADSFSKLVVISHAPKRRALLLSLAALLALGLLYAAFEFGRYEAGFRVVDSVRGALSASARIRGL
Ga0209006_108445362	3300027908	Forest Soil	MADSFDKLVVRTHAPKRRAVLLGVAVLLGAGVLYVAFELGRYEAGFRVVDSVRGAFTPSVGTAGRRCRG
Ga0209698_102224701	3300027911	Watersheds	MAVSFGKLVVRSYAPRRRAVLVALGALCGLAIVYGAFELGRYQSGYNVIDSVRGALA
Ga0265356_10126031	3300028017	Rhizosphere	LFGKLVVRPHAPKRRAVLLGVAVACGLAILYATFELG
Ga0265352_10001811	3300028021	Soil	MADSFSKLVVRPHAPKRLAALWTLGLLLAGTILYSAFELG
Ga0302145_101301371	3300028565	Bog	MAAPPPNLVVRSYTPRRRVTLLVGGVAGLILLLYAVFELGRYDAGFRVIDSMQGAL
Ga0302156_103207642	3300028748	Bog	MAFSIGKLVVRTYAPKRRAVGIAALVVVGLVALYGAFELGRYDAGFRVIDSVRGALSASARI
Ga0302198_101056821	3300028765	Bog	MAFSIGKLVVRTYAPKRRAVGIAALVVVGLVALYGAFELGRYDAGFRVID
Ga0302279_102827142	3300028783	Bog	MAVSLRKLVVRSYAPKRRAVLVGLIAVSGLMIVYAAFELGRYDAGFRVV
Ga0302226_103962171	3300028801	Palsa	MADFFGNLVVRAHSPRRRAVLLGGAVLLALLILYAAFELGRYDAGF
Ga0302228_103765721	3300028808	Palsa	LFGKLVVRPHAPKRRAVLLGLAVLAGLAILYVTFEFGR
Ga0302157_102585053	3300028813	Bog	MAESFGRLVVRRYAPKRRAVLAVLAVLGTFAALYAAFEFGRYDAGFRVVD
Ga0302146_103104992	3300028867	Bog	MAFSIGKLVVRTYAPKRRAVGIAALVVVGLVALYGAFELGRYDAGFRVIDSVRGALSASARIRG
Ga0311362_112552972	3300029913	Bog	MVGKIVVRSHTPRRRAVLWSTAALIGIAILYVVFELGRFDAGFRVVDSVRGALA
Ga0302142_11241593	3300029920	Bog	MAQWFDRLVIRSYAPKRLAMLFAVTALLGLFILYGAFELGRYDAGFRVVDSVRGALSTAKRIRDL
Ga0311334_106738521	3300029987	Fen	MADSFGKLVVRSHSPRRRAFLLAGVGLLAVALLYGMFELGRYDAGYRVVDAVRGALSASVRLRSLEAE
Ga0302181_105089012	3300030056	Palsa	MADAFAKLVVRSYAPKRQAALWIGVVLSAAFVLYAAFEVGRYDAGFRVVDSVR
Ga0311353_100435088	3300030399	Palsa	MADFFGNLVVRAHSPRRRAVLLGGAVLLALLILYAAFELGRYDAGFRVIDSVRGALAASSRIR
Ga0302193_102109211	3300030519	Bog	MAQWFDRLVIRSYAPKRLAMLFAVTALLGLFILYGAFELGRYDAGFR
Ga0311355_116101822	3300030580	Palsa	MADFFGKLVVRAYASPRRRAWFLGSAAMLAALILYAMFELGRYDAGYRVVDSVHGAW
Ga0311354_119314712	3300030618	Palsa	MADYFGKLVVRAHTPKRRAVLIAGAVLLTLAVLYAAFELGRYDAGFRVVDSVRGALSAS
Ga0302310_106426721	3300030737	Palsa	MADSFGKLVVRSYSPKRRALLWSLAALLTLLVIYAVFELGRYDAGFRVVDSVRGALSASARIRSL
Ga0265762_10890492	3300030760	Soil	MANYFGKLVVRSHTPKLRAVLQVLAVLLAAALLYAAFEFGRYDAGFRVVDSVRGALIASARIR
Ga0302314_115094962	3300030906	Palsa	MADFFGKLVVRAYASPKRRAWFLGSAGVLAALILYGMFELGRFDAGYRVVDTVRGAWAS
Ga0302308_105314391	3300031027	Palsa	LFGKFVVRSYAPKRRALMLGSAVVLALLLLYGAFELGRYDAGFRVVDSVRGALAASA
Ga0170834_1046771202	3300031057	Forest Soil	MADSFSKLVVRSYTPKRRAMLWTLAVLFTVGILYSAFELGRYDAGFRVVDSVRGA
Ga0170824_1064735961	3300031231	Forest Soil	MADSFGKLVIRNYAPRRRALLWSGAVLAALAVLYAAFEMGRFDAGFRVVDSVRGALAASSRI
Ga0170824_1137451941	3300031231	Forest Soil	MADSFSKLVVRSYTPKRRAMLWTLAVLFTVGVLYSAFELGRYDAGFR
Ga0302324_1024203391	3300031236	Palsa	MADLFGKIVARSYAPRARAVRLAGAALLALAVLYGVFELGRYDAGFRAVDSVRGALLASS
Ga0302318_100649011	3300031258	Bog	MAAPPPNLVVRSYTPRRRVTLLVGGVAGLILLLYAVFELGRYDAGFRVIDSMQGALSASA
Ga0302326_121961193	3300031525	Palsa	MADFFGKRVVRSYSSPKRRAWLLGTAATLAALILYAAFELGRYDAGFRVVDSV
Ga0310686_1076313692	3300031708	Soil	MADYFSKLVVRAHTPKRRAVLLSLSTLAVLGVLYAAFELGRYDAGFRVVDSVRGALSASARIRG
Ga0310686_1157753341	3300031708	Soil	MADSSGKLVVRSYAPKRHAVLWTMAALLTIGILYAAFELGRYD
Ga0310686_1186920482	3300031708	Soil	MADFFGKLVVRAYASPKRRAWFLGTAGALAALVLYGMFELGRHDAGYRVVDSVR
Ga0307471_1028450131	3300032180	Hardwood Forest Soil	MVDSFGNLVVRSHAPRRRAVLIGLAVLLAFGILYAAFELGRYDAGFRVVDSVRGALSASSRIRNL
Ga0316214_10508361	3300033545	Roots	MADSFSKLVVRAYAPKRRAVLWTLAGLLIAGILYTAFELGRYEAGFRVVDSVRG

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F059285

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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