Metagenome / Metatranscriptome Family F059414

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F059414
Family Type	Metagenome / Metatranscriptome
Number of Sequences	134
Average Sequence Length	42 residues
Representative Sequence	YIDSRGRVGIAVNQGNYSKKFNIEPPGTIFIPRKGAPLKEK
Number of Associated Samples	102
Number of Associated Scaffolds	134

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	99.25 %
% of genes from short scaffolds (< 2000 bps)	86.57 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.18

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (84.328 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (47.015 % of family members)
Environment Ontology (ENVO)	Unclassified (47.015 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (48.507 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 7.25% β-sheet: 2.90% Coil/Unstructured: 89.86%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.18
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.18
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 134 Family Scaffolds
PF12704	MacB_PCD	20.15
PF00108	Thiolase_N	9.70
PF04542	Sigma70_r2	8.21
PF02803	Thiolase_C	4.48
PF09424	YqeY	2.99
PF08281	Sigma70_r4_2	2.24
PF13472	Lipase_GDSL_2	2.24
PF13505	OMP_b-brl	2.24
PF02472	ExbD	1.49
PF13620	CarboxypepD_reg	1.49
PF00389	2-Hacid_dh	1.49
PF00206	Lyase_1	0.75
PF03551	PadR	0.75
PF05598	DUF772	0.75
PF13490	zf-HC2	0.75
PF00378	ECH_1	0.75
PF01887	SAM_HAT_N	0.75
PF05090	VKG_Carbox	0.75
PF00528	BPD_transp_1	0.75
PF05726	Pirin_C	0.75
PF01344	Kelch_1	0.75
PF00069	Pkinase	0.75
PF11946	DUF3463	0.75
PF10604	Polyketide_cyc2	0.75
PF13628	DUF4142	0.75
PF00561	Abhydrolase_1	0.75

COG ID	Name	Functional Category	% Frequency in 134 Family Scaffolds
COG0183	Acetyl-CoA acetyltransferase	Lipid transport and metabolism [I]	14.18
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	8.21
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	8.21
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	8.21
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	8.21
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	2.99
COG0848	Biopolymer transport protein ExbD	Intracellular trafficking, secretion, and vesicular transport [U]	1.49
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.75
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.75
COG1741	Redox-sensitive bicupin YhaK, pirin superfamily	General function prediction only [R]	0.75
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.75
COG1912	Stereoselective (R,S)-S-adenosylmethionine hydrolase (adenosine-forming)	Defense mechanisms [V]	0.75

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	84.33 %
Unclassified	root	N/A	15.67 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	84.33 %
Unclassified	root	N/A	15.67 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	84.33 %
Unclassified	root	N/A	15.67 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	70.15 %
Unclassified	root	N/A	15.67 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.75 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	25.37 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	24.63 %
Unclassified	root	N/A	15.67 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.75 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	25.37 %
Unclassified	root	N/A	15.67 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	9.70 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.75 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	25.37 %
Unclassified	root	N/A	15.67 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9.70 %
Sphingobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia	0.75 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	25.37 %
Unclassified	root	N/A	15.67 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.75 %
Sphingobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales	0.75 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.75 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	25.37 %
Unclassified	root	N/A	15.67 %
Acidobacteriaceae bacterium URHE0068	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	0.75 %
unclassified Sphingobacteriales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → unclassified Sphingobacteriales	0.75 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.75 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	25.37 %
Unclassified	root	N/A	15.67 %
Sphingobacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → unclassified Sphingobacteriales → Sphingobacteriales bacterium	0.75 %
Acidobacteriaceae bacterium URHE0068	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	0.75 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.75 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_100974855	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540	Open in IMG/M
3300000955\|JGI1027J12803_104694506	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300002909\|JGI25388J43891_1054525	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	598	Open in IMG/M
3300004080\|Ga0062385_10710187	All Organisms → cellular organisms → Bacteria → Acidobacteria	649	Open in IMG/M
3300004082\|Ga0062384_100858456	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	639	Open in IMG/M
3300004092\|Ga0062389_100366301	All Organisms → cellular organisms → Bacteria → Acidobacteria	1545	Open in IMG/M
3300004092\|Ga0062389_102920567	All Organisms → cellular organisms → Bacteria → Acidobacteria	639	Open in IMG/M
3300004479\|Ga0062595_101421011	Not Available	634	Open in IMG/M
3300005167\|Ga0066672_10350231	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	964	Open in IMG/M
3300005468\|Ga0070707_101028225	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	789	Open in IMG/M
3300005554\|Ga0066661_10551774	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	689	Open in IMG/M
3300005554\|Ga0066661_10576409	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	670	Open in IMG/M
3300005557\|Ga0066704_10885825	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300005921\|Ga0070766_10724810	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	674	Open in IMG/M
3300006032\|Ga0066696_10764885	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300006046\|Ga0066652_102020015	Not Available	513	Open in IMG/M
3300006163\|Ga0070715_10067025	Not Available	1593	Open in IMG/M
3300006176\|Ga0070765_100567804	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1069	Open in IMG/M
3300006755\|Ga0079222_10219658	All Organisms → cellular organisms → Bacteria	1163	Open in IMG/M
3300006755\|Ga0079222_11674835	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300006794\|Ga0066658_10715948	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	555	Open in IMG/M
3300006796\|Ga0066665_10513763	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	979	Open in IMG/M
3300006796\|Ga0066665_11517597	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300007255\|Ga0099791_10351902	All Organisms → cellular organisms → Bacteria → Acidobacteria	706	Open in IMG/M
3300007258\|Ga0099793_10065204	Not Available	1635	Open in IMG/M
3300009038\|Ga0099829_10063318	Not Available	2783	Open in IMG/M
3300009038\|Ga0099829_10083596	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2450	Open in IMG/M
3300009038\|Ga0099829_11009051	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	690	Open in IMG/M
3300009088\|Ga0099830_10021241	All Organisms → cellular organisms → Bacteria	4235	Open in IMG/M
3300009088\|Ga0099830_10910789	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300009089\|Ga0099828_11991440	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	508	Open in IMG/M
3300009137\|Ga0066709_104432028	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	513	Open in IMG/M
3300009143\|Ga0099792_11058498	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	544	Open in IMG/M
3300010043\|Ga0126380_10966909	All Organisms → cellular organisms → Bacteria → Acidobacteria	714	Open in IMG/M
3300010047\|Ga0126382_11217451	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → unclassified Sphingobacteriales → Sphingobacteriales bacterium	675	Open in IMG/M
3300010303\|Ga0134082_10439708	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	562	Open in IMG/M
3300010360\|Ga0126372_10972498	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300010360\|Ga0126372_12572322	Not Available	560	Open in IMG/M
3300010364\|Ga0134066_10014134	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1668	Open in IMG/M
3300011269\|Ga0137392_10159238	All Organisms → cellular organisms → Bacteria	1827	Open in IMG/M
3300011269\|Ga0137392_10405931	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1131	Open in IMG/M
3300011269\|Ga0137392_11252470	All Organisms → cellular organisms → Bacteria → Acidobacteria	600	Open in IMG/M
3300011270\|Ga0137391_10638501	All Organisms → cellular organisms → Bacteria	889	Open in IMG/M
3300011271\|Ga0137393_11627271	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	535	Open in IMG/M
3300012096\|Ga0137389_10114607	All Organisms → cellular organisms → Bacteria	2163	Open in IMG/M
3300012096\|Ga0137389_11678417	Not Available	531	Open in IMG/M
3300012096\|Ga0137389_11689579	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300012189\|Ga0137388_10219970	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1718	Open in IMG/M
3300012189\|Ga0137388_10420384	Not Available	1238	Open in IMG/M
3300012189\|Ga0137388_10515402	All Organisms → cellular organisms → Bacteria → Acidobacteria	1111	Open in IMG/M
3300012199\|Ga0137383_10415224	Not Available	986	Open in IMG/M
3300012199\|Ga0137383_10431491	Not Available	965	Open in IMG/M
3300012202\|Ga0137363_11357335	All Organisms → cellular organisms → Bacteria → Acidobacteria	600	Open in IMG/M
3300012203\|Ga0137399_10642866	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	892	Open in IMG/M
3300012203\|Ga0137399_11636136	All Organisms → cellular organisms → Bacteria → Acidobacteria	532	Open in IMG/M
3300012205\|Ga0137362_10241330	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1560	Open in IMG/M
3300012207\|Ga0137381_10144368	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2044	Open in IMG/M
3300012208\|Ga0137376_10193908	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1756	Open in IMG/M
3300012210\|Ga0137378_10831785	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	836	Open in IMG/M
3300012210\|Ga0137378_11212529	Not Available	670	Open in IMG/M
3300012211\|Ga0137377_10347911	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1419	Open in IMG/M
3300012349\|Ga0137387_10914144	All Organisms → cellular organisms → Bacteria → Acidobacteria	633	Open in IMG/M
3300012357\|Ga0137384_10626415	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	877	Open in IMG/M
3300012361\|Ga0137360_10268943	All Organisms → cellular organisms → Bacteria → Acidobacteria	1406	Open in IMG/M
3300012361\|Ga0137360_11884744	All Organisms → cellular organisms → Bacteria → Acidobacteria	504	Open in IMG/M
3300012362\|Ga0137361_11048608	All Organisms → cellular organisms → Bacteria → Acidobacteria	736	Open in IMG/M
3300012363\|Ga0137390_10190277	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2038	Open in IMG/M
3300012363\|Ga0137390_11121759	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	735	Open in IMG/M
3300012582\|Ga0137358_10041546	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3047	Open in IMG/M
3300012582\|Ga0137358_10391765	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	940	Open in IMG/M
3300012685\|Ga0137397_10009826	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	6661	Open in IMG/M
3300012685\|Ga0137397_11271751	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	525	Open in IMG/M
3300012918\|Ga0137396_10970154	All Organisms → cellular organisms → Bacteria → Acidobacteria	618	Open in IMG/M
3300012922\|Ga0137394_10587474	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	942	Open in IMG/M
3300012924\|Ga0137413_11178321	All Organisms → cellular organisms → Bacteria → Acidobacteria	610	Open in IMG/M
3300012925\|Ga0137419_10485794	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	978	Open in IMG/M
3300012925\|Ga0137419_10719738	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	811	Open in IMG/M
3300012925\|Ga0137419_11331515	Not Available	604	Open in IMG/M
3300012925\|Ga0137419_11345599	All Organisms → cellular organisms → Bacteria → Acidobacteria	601	Open in IMG/M
3300012927\|Ga0137416_10606293	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	954	Open in IMG/M
3300014166\|Ga0134079_10012655	All Organisms → cellular organisms → Bacteria → Acidobacteria	2595	Open in IMG/M
3300014201\|Ga0181537_10038346	All Organisms → cellular organisms → Bacteria	3278	Open in IMG/M
3300015053\|Ga0137405_1304703	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2465	Open in IMG/M
3300015241\|Ga0137418_10537603	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	928	Open in IMG/M
3300015241\|Ga0137418_11309419	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300015264\|Ga0137403_10469305	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1132	Open in IMG/M
3300016270\|Ga0182036_10121745	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1812	Open in IMG/M
3300017943\|Ga0187819_10072850	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2045	Open in IMG/M
3300018090\|Ga0187770_10644375	All Organisms → cellular organisms → Bacteria	844	Open in IMG/M
3300018468\|Ga0066662_11389427	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	726	Open in IMG/M
3300020021\|Ga0193726_1172928	All Organisms → cellular organisms → Bacteria → Acidobacteria	926	Open in IMG/M
3300020199\|Ga0179592_10216832	All Organisms → cellular organisms → Bacteria → Acidobacteria	865	Open in IMG/M
3300020579\|Ga0210407_11031993	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	626	Open in IMG/M
3300020579\|Ga0210407_11420713	Not Available	514	Open in IMG/M
3300020581\|Ga0210399_11546908	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	513	Open in IMG/M
3300021046\|Ga0215015_10225413	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	711	Open in IMG/M
3300021170\|Ga0210400_11098143	All Organisms → cellular organisms → Bacteria → Acidobacteria	644	Open in IMG/M
3300021420\|Ga0210394_10558899	All Organisms → cellular organisms → Bacteria → Acidobacteria	1006	Open in IMG/M
3300021432\|Ga0210384_10565456	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1022	Open in IMG/M
3300021433\|Ga0210391_10672212	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	812	Open in IMG/M
3300021479\|Ga0210410_10000887	All Organisms → cellular organisms → Bacteria	29427	Open in IMG/M
3300021560\|Ga0126371_13411602	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300022726\|Ga0242654_10306231	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	586	Open in IMG/M
3300024288\|Ga0179589_10269129	All Organisms → cellular organisms → Bacteria → Acidobacteria	760	Open in IMG/M
3300026328\|Ga0209802_1277197	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	561	Open in IMG/M
3300026515\|Ga0257158_1005414	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1784	Open in IMG/M
3300026537\|Ga0209157_1017353	All Organisms → cellular organisms → Bacteria → Acidobacteria	4562	Open in IMG/M
3300026538\|Ga0209056_10357888	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	951	Open in IMG/M
3300026557\|Ga0179587_11182229	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	503	Open in IMG/M
3300027370\|Ga0209010_1031738	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	905	Open in IMG/M
3300027545\|Ga0209008_1155821	Not Available	501	Open in IMG/M
3300027587\|Ga0209220_1123532	Not Available	675	Open in IMG/M
3300027591\|Ga0209733_1115754	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	668	Open in IMG/M
3300027655\|Ga0209388_1076785	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	962	Open in IMG/M
3300027655\|Ga0209388_1233106	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300027795\|Ga0209139_10318214	Not Available	546	Open in IMG/M
3300027862\|Ga0209701_10368477	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300027862\|Ga0209701_10556265	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300027882\|Ga0209590_10257927	Not Available	1113	Open in IMG/M
3300028536\|Ga0137415_11064693	All Organisms → cellular organisms → Bacteria → Acidobacteria	621	Open in IMG/M
3300030618\|Ga0311354_10881233	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	836	Open in IMG/M
3300030618\|Ga0311354_11845678	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	524	Open in IMG/M
3300031236\|Ga0302324_100087092	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	5363	Open in IMG/M
3300031718\|Ga0307474_11642462	All Organisms → cellular organisms → Bacteria → Acidobacteria	504	Open in IMG/M
3300031768\|Ga0318509_10846781	Not Available	505	Open in IMG/M
3300031820\|Ga0307473_10322184	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	982	Open in IMG/M
3300031897\|Ga0318520_10050027	All Organisms → cellular organisms → Bacteria → Acidobacteria	2192	Open in IMG/M
3300031962\|Ga0307479_10190249	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2020	Open in IMG/M
3300031962\|Ga0307479_10712989	Not Available	982	Open in IMG/M
3300032089\|Ga0318525_10655318	Not Available	535	Open in IMG/M
3300032091\|Ga0318577_10085095	Not Available	1466	Open in IMG/M
3300032174\|Ga0307470_11512079	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	558	Open in IMG/M
3300032180\|Ga0307471_100156276	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2204	Open in IMG/M
3300032180\|Ga0307471_103187487	All Organisms → cellular organisms → Bacteria → Acidobacteria	581	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.78%
Aquatic	Environmental → Aquatic	5.22%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	92.54%
Freshwater	Environmental → Aquatic → Freshwater	5.22%
Peat	Environmental → Terrestrial → Peat	2.24%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	85.82%
Loam	Environmental → Terrestrial → Soil → Loam	5.97%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.22%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.24%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	54.48%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	16.42%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.69%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.48%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.24%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.24%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.49%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.75%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	47.01%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	10.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.45%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.22%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.73%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.99%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.24%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.24%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.24%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.49%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.49%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.49%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.49%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.75%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.75%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.75%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002909	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026515	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027370	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)	Environmental	Open in IMG/M
3300027545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027587	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027591	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1009748551	3300000955	Soil	GEPLLYVDSRGRMTIAVNQGNYSKKFGVEPGASIVVPRRSRKSK*
JGI1027J12803_1046945062	3300000955	Soil	GEPLLYVDSRGRMTIAVNQGNYSKKFGVEPGASIVVPPRSRKSK*
JGI25388J43891_10545251	3300002909	Grasslands Soil	DPLLFIDSRNRVSIAVNQGDYSKKFGVAPPATIFIPRKGAFLKAK*
Ga0062385_107101872	3300004080	Bog Forest Soil	LLYIDSRGRVGIAVNEGNYSKKFTITPPGAIFIPRKGAPLKGK*
Ga0062384_1008584561	3300004082	Bog Forest Soil	GDTLLYIDSRGRLGVAVNQGNYSEKFSIRPPGTIFVPRKRKP*
Ga0062389_1003663013	3300004092	Bog Forest Soil	DSRGRVGIAVNEGNYSKKFNITPPGTIFIPRKGAPLKGK*
Ga0062389_1029205672	3300004092	Bog Forest Soil	DSRGRVGIAVNEGNYSKKFTITPPGAIFIPRKGAPLKGK*
Ga0062595_1014210112	3300004479	Soil	LLYIDSRGRVGIAINQGDFGRKYNIHPPGTIFIPRKGLPFKGR*
Ga0066672_103502311	3300005167	Soil	LLFIDSRDRVSIAVNQGNYSKKFNVEPPGAIFIPRKGAPLKEK*
Ga0070707_1010282251	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	LLYQDSRGRIAIAINQGNYSRKFAIEPPGTIFIPRKGALLKR*
Ga0066661_105517742	3300005554	Soil	SLLFIDSRNRVSIAVNQGDYSRKFGVEPPGTIFIPRKGAFVKAR*
Ga0066661_105764092	3300005554	Soil	DSRNRVSIAVNQGDYSRKFGVEPPGTIFIPRKGAFLKVR*
Ga0066704_108858251	3300005557	Soil	VAVGESLLYVDSRGRVGIAVNQGSYSKKFNVMPPEKIFIPRKGLPFRVR*
Ga0070766_107248102	3300005921	Soil	LYIDSRGRVGIANNEGNYAKKFDVNPPGTIFIPRKGAAHK*
Ga0066696_107648852	3300006032	Soil	GDSLLFIDSRNRVSIAVNQGDYSRKFGVEHPGTIFIPRKGAFVKAR*
Ga0066652_1020200151	3300006046	Soil	VDSRGRVGIAVNQGSYSKQFEVAPPGTIFIPRKGVALKSK*
Ga0070715_100670251	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	QDSRGRIAIAINQGNYSRKFAIEPPGTIFIPRKGALLKR*
Ga0070765_1005678042	3300006176	Soil	RGRVSIAVNQGNYSKKFAVEPPGTISIPRKGVPTKGR*
Ga0079222_102196582	3300006755	Agricultural Soil	LLYVDSRGRVGIAVNQGNYSIQFDVTPPGTIFIARKGIPFKTK*
Ga0079222_116748352	3300006755	Agricultural Soil	YVDSRGRVGIAVNQGSYSKQFGVTPPASIFVARKGIPIKTK*
Ga0066658_107159481	3300006794	Soil	IDSRGRVSIAVNQGDYSRKFSVEPPATIFILRKGAFLKPR*
Ga0066665_105137632	3300006796	Soil	FIDSRNRVSIAVNQGDYSRKFGVEPPGTIFIPRKGVFLKVR*
Ga0066665_115175972	3300006796	Soil	GDSLLFIDSRDRVSIAVNQGNYSKKFNVEPPGAIFIPRKGAPLKEK*
Ga0099791_103519022	3300007255	Vadose Zone Soil	GDSLLYVDSRGRVGIANNQGNYSKKFDVTPPATIFIPRKGVPIKGK*
Ga0099793_100652042	3300007258	Vadose Zone Soil	LLVIDSRGRVSIAVNQGNYSKKFNVEPPGTMFIPRKGAPLKER*
Ga0099829_100633184	3300009038	Vadose Zone Soil	DSLLFVDSRGRVSIAINQGNYSKKYNVEPPGTVFIPRKGAALKEK*
Ga0099829_100835962	3300009038	Vadose Zone Soil	VSVAMNQGNYSKKFGIEPPATIFIPRNGPFVKDK*
Ga0099829_110090512	3300009038	Vadose Zone Soil	YIDSRGRVGIALSQGNYSRKFSITPPGTISIPRKGAPIKGK*
Ga0099830_100212417	3300009088	Vadose Zone Soil	SRDRVSIAINQSNYSKKFGVEPPGTIFIPRKGAAIKDK*
Ga0099830_109107891	3300009088	Vadose Zone Soil	VDSRGRVGIAISQGNYARKFNINLPGIIFIPRKGTPIKGK*
Ga0099828_119914401	3300009089	Vadose Zone Soil	MDVPVGESLLYVDSRGRVGIAISQGNYARKFNINPPGTIFIPRKGTPIKGK*
Ga0066709_1044320282	3300009137	Grasslands Soil	SLLFIDSRNRVSIAVNQGDYSRKFGVEPPGTIFIPRKGAFLKVR*
Ga0099792_110584982	3300009143	Vadose Zone Soil	GDSLLFIDSRDRVSISVNQGNYSKKFNIEPPATIFIPRKSPFTRSM*
Ga0126380_109669091	3300010043	Tropical Forest Soil	FMDVPVGDSLLYQDSRGRIGIAVNQGNFSKKFNIEPPATIFVPRKGASLAKNAKQSR*
Ga0126382_112174511	3300010047	Tropical Forest Soil	PVGDSLLYQDSRGRIGIAINQGNYSKKFGIEPPAKIFIPRKGAAIGKSH*
Ga0134082_104397082	3300010303	Grasslands Soil	SLLFIDSRNRVSIAVNQGDYSRKFGVEPPGTIFIPRKGVFLKVR*
Ga0126372_109724982	3300010360	Tropical Forest Soil	RGRVGVAVNQGNYSKTFSVTPPASISIPRKGLPLKGK*
Ga0126372_125723221	3300010360	Tropical Forest Soil	SVGEPLLYVDSRGRVGVAINQGNYSRMFNVMPPANIFIFRKGVPIKGK*
Ga0134066_100141341	3300010364	Grasslands Soil	SRGRVGIAINQGNYSKQFGVTPPAPVFIARKGIPLKTK*
Ga0137392_101592385	3300011269	Vadose Zone Soil	SRGRVGIAVNQGNYSKKFDVKPPGTIFIARKGISLKTK*
Ga0137392_104059312	3300011269	Vadose Zone Soil	PVGEVLLFIDSRDRVSIAINQGNYSKKFNVESPGTIFIPRKGPAIKDK*
Ga0137392_112524702	3300011269	Vadose Zone Soil	SRGRVGIAINQGSYARKFNVTPPEKIFIPRKGALVKFR*
Ga0137391_106385013	3300011270	Vadose Zone Soil	DSRGRVGIAISQGNYARKFNINPPGTIFIPRKGTPLKGK*
Ga0137393_116272712	3300011271	Vadose Zone Soil	SRGRVGIAISQGNYARKFNINPPGTIFIPRKGTPLKGK*
Ga0137389_101146073	3300012096	Vadose Zone Soil	ESLLYVDSRGRVGIAVNQGSYSKKFNVMPPEKIFIQRKGVPIKFR*
Ga0137389_116784172	3300012096	Vadose Zone Soil	LLYVDSRGRLGIAINQGNYSKKFNLAPPGTIFIPRKGAPLKGK*
Ga0137389_116895791	3300012096	Vadose Zone Soil	GESLLYVDSRERVGIAVNQGSYSKKFNIMPPEKIFISRKGVPIKFR*
Ga0137388_102199701	3300012189	Vadose Zone Soil	DSRGRVGIANNQGNYSKKFDVMPPGTIFIPRKGAPIKGK*
Ga0137388_104203842	3300012189	Vadose Zone Soil	GDSLLYVDSRGRVGIAINQGNYSKKYNLAPPGTIFIPRKGAPLKGK*
Ga0137388_105154021	3300012189	Vadose Zone Soil	DSRGRVGIALNQDNYARKFKITPPEKIFIPRKGVPIRGR*
Ga0137383_104152241	3300012199	Vadose Zone Soil	IDSRGRVGIALSQGNYSRKFSITPPGTISIPRKGAPIKGK*
Ga0137383_104314912	3300012199	Vadose Zone Soil	LLYIDSRGRVGIALSQGNYSRKFSITPPGTISIPRKGAPIKGK*
Ga0137363_113573352	3300012202	Vadose Zone Soil	RVGIAINQGSYSRKFNIEPPGKIFIPRKGVPIKVR*
Ga0137399_106428662	3300012203	Vadose Zone Soil	DSRGRVGIAINEGNYSKKFDVTPPATIFIPRKGAPIKGK*
Ga0137399_116361361	3300012203	Vadose Zone Soil	RGRVGIAVNEGNYSKKFDVTPPGTIFIPRRGAPFKGK*
Ga0137362_102413301	3300012205	Vadose Zone Soil	IDYRGGGAIGNNRGNYSKKFDVTPPGTIFIPRKGSPIKGK*
Ga0137381_101443682	3300012207	Vadose Zone Soil	DRVSIAINRGNYSKKFNIEPPGTIFIPRKGAPIKDK*
Ga0137376_101939081	3300012208	Vadose Zone Soil	VSIAVNQGNYSKKFNVEPPGTIFIPLKGAPLKERQIDRHP*
Ga0137378_108317852	3300012210	Vadose Zone Soil	SRDRVSIAVSQGSYSKKFSVEPPGTIFIPRKGPFFRPK*
Ga0137378_112125292	3300012210	Vadose Zone Soil	RVGIALSQGNYSRKFSITPPGTISIPRKGAPIKGK*
Ga0137377_103479112	3300012211	Vadose Zone Soil	RGRVGIALSQGNYSRKFSITPPGTISIPRKGAPIKGK*
Ga0137387_109141442	3300012349	Vadose Zone Soil	VGIALSQGNYSRKFSITPPGTISIPRKGAPIKGK*
Ga0137384_106264151	3300012357	Vadose Zone Soil	RVSIAVNQGSYSKKFNVEPPGNIFIPRKGLPFKAK*
Ga0137360_102689433	3300012361	Vadose Zone Soil	YIDSRGRVGIAVNQGSFARKFNFTPPEKIFIPRKGVPLKVR*
Ga0137360_118847442	3300012361	Vadose Zone Soil	GRVGIAINQGSYSRKFNIEPPGKIFIPRKGVPIKVR*
Ga0137361_110486081	3300012362	Vadose Zone Soil	VPVGESLLYVDSRGRVGIAINQGSYSRKFNIEPPGEIFIPRKGAPIKFR*
Ga0137390_101902772	3300012363	Vadose Zone Soil	GDSLLYIDSRGRVGIAVNEGNYSKKFDVTPPATIFIPRKGAPIKGK*
Ga0137390_111217591	3300012363	Vadose Zone Soil	FIDSRDRVSIAVSQGSYSKKFSVEPPGTIFIPRKGPFFRPK*
Ga0137358_100415461	3300012582	Vadose Zone Soil	YIDSRGRVGIAVNQGNYSKKFNIEPPGTIFIPRKGAPLKEK*
Ga0137358_103917651	3300012582	Vadose Zone Soil	IDSRGHVSIAVNQGNYSKKFNVEPPGAIFIPRKGAPLKER*
Ga0137397_100098266	3300012685	Vadose Zone Soil	VGDSLLYIDSRGRVGIAVNQGNYSKKFNIEPPGTIFIPRKGAPLKEK*
Ga0137397_112717512	3300012685	Vadose Zone Soil	DSRGRVGIANNQGNYSKKFDVTPPGTIFIPRKGVPIKGK*
Ga0137396_109701542	3300012918	Vadose Zone Soil	SRGRVGIAINQGSYSRKFNIEPPGKIFIPRKGAPIKFR*
Ga0137394_105874741	3300012922	Vadose Zone Soil	VPVGDSLLYIDSRGRVGIAINEGNYSKKFGIMPPGTIFIPRKGTPLKGK*
Ga0137413_111783211	3300012924	Vadose Zone Soil	DSRGRVGIAVNQGSYSKKFNIMPPEKIFISRKGVPVKFH*
Ga0137419_104857941	3300012925	Vadose Zone Soil	GDSLLFIDSRGRVSIAVNQGNYSKKLNVEPPGTIFIPRKGAPLKER*
Ga0137419_107197381	3300012925	Vadose Zone Soil	LFIDSRNRVSIAVNQGDYSRKFGVEPPGTIFIPRKGAFLKAR*
Ga0137419_113315152	3300012925	Vadose Zone Soil	DLLLYIDSRGRVGIAVNEGNYSKKHDVTPPGTIFILRKGAPFKGK*
Ga0137419_113455992	3300012925	Vadose Zone Soil	GDSLLFIDSRDRVSVAVNQGNYSRKFNVEPPATIFIPRRGAPIKGK*
Ga0137416_106062931	3300012927	Vadose Zone Soil	ALLFIDSRGRVSIAVNQGNYSKKFNVEPPGTIFIPRKGAPFKER*
Ga0134079_100126551	3300014166	Grasslands Soil	RVSIAVNQGNYSKKFNIEPPGAIFIPRKGAPLKEK*
Ga0181537_100383461	3300014201	Bog	GRLGVAVNQGNYSKKFNVEPPVEIFIPRKGAPLKNK*
Ga0137405_13047034	3300015053	Vadose Zone Soil	MDVPVGDSLLYQDSRGRIGIAVNQGNYSKRFGIEPPAKVFIPRKGAALGKKN*
Ga0137418_105376033	3300015241	Vadose Zone Soil	DSRDRVSIAVNQGNYSKKFNVEPPGAIFIPRKGVPLKEK*
Ga0137418_113094192	3300015241	Vadose Zone Soil	RGRVGIANNQGNYSKKFDITPPGTIFIPRKGAPLKGK*
Ga0137403_104693052	3300015264	Vadose Zone Soil	EPLLYTDSRGRIGIAVNQGNYSKKFSIEPPGTIFVPRKGAALKR*
Ga0182036_101217453	3300016270	Soil	LLYIDSRGRVAIAVNQGNYARKFGIAPPASLFIPKKAAALKSARH
Ga0187819_100728502	3300017943	Freshwater Sediment	VGDTLLYIDSRGRVGIAINQGNYSKKFNIEPPGTIFIPRKGVALKSK
Ga0187770_106443751	3300018090	Tropical Peatland	DSRDRVSIAVNQASYAKKFNIEPPGTLFIPRKGSPIKGK
Ga0066662_113894271	3300018468	Grasslands Soil	YIDSRGRVGIALSQGNYSRKFSITPPGTISIPRKGAPIKGK
Ga0193726_11729281	3300020021	Soil	DSRGRVGIANNEGNYAKKFKFSPPGMIFIPRKGGTR
Ga0179592_102168321	3300020199	Vadose Zone Soil	YVDSRGRVGIAVNQGSYSKKFNIMPPEKIFISRKGVPVKFR
Ga0210407_110319932	3300020579	Soil	RGRVSIAVNQGNYSKKFGVEPPGTISIPRKGVPTKGR
Ga0210407_114207132	3300020579	Soil	TLLYIDSRGRLGLAVNQGNYSEKFNVRPPGTVFVPRKGASKSKP
Ga0210399_115469081	3300020581	Soil	SRGRVGIANNEGNYAKKFDITPPGTVFIPRKGAPLKGK
Ga0215015_102254132	3300021046	Soil	LYIDSRGRVGIANNEGNYSKKFGITPPGTIFIPRRGAPIQGRS
Ga0210400_110981432	3300021170	Soil	LYIDSRGRVGIAVNQDNYSRKFSIAPPAKILIPRKGLPFKAR
Ga0210394_105588991	3300021420	Soil	SRGRVSIAVNQGNYSKKFNVEPPGTIFIPRKGTPIRDR
Ga0210384_105654561	3300021432	Soil	DSRGRVGIANNEGNYAKKFDVNPPGTIFIPRKGAARKDK
Ga0210391_106722121	3300021433	Soil	LYIDSRGRVGLAVNQGNYSEKFNVRPPGAILIPRKASR
Ga0210410_1000088729	3300021479	Soil	VGIAINQGSYTKKFNIAPPEKIFIPRKGTPMKVVRRPAA
Ga0126371_134116022	3300021560	Tropical Forest Soil	RVGIAINQGDYSKKFNITPPGTIFIPRKSAFTRTK
Ga0242654_103062311	3300022726	Soil	DSRGRVAIAVNQGNYSKKFNIEPPGAIFIPRKGAPLKEK
Ga0179589_102691291	3300024288	Vadose Zone Soil	SRGRVGIAVNQGSYSKKFNIMPPEKIFISRKGVPVKFH
Ga0209802_12771971	3300026328	Soil	SLLFIDSRNRVSIAVNQGDYSRKFGVEPPGTIFIPRKGAFLKVR
Ga0257158_10054143	3300026515	Soil	SRDRVSIAINQGNYSKKFSVEPHGTIFIPRKGAPLKEK
Ga0209157_10173531	3300026537	Soil	RNRVSIAVNQGDYSRKFGVEPPGTIFIPRKGVFLKVR
Ga0209056_103578883	3300026538	Soil	GDSLLFIDSRDRVSIAVNQGNYSKKFNVEPPGAIFIPRKGAPLKEK
Ga0179587_111822292	3300026557	Vadose Zone Soil	DRVSVAVNQGNYSRKFNVEPPATVFIPRRAAPIKGK
Ga0209010_10317383	3300027370	Forest Soil	ATLLYIDSRGRVGLAVNQGNYSEKFNIRPPGAILIPRKTSG
Ga0209008_11558211	3300027545	Forest Soil	VAVGDSLLYINSRGRLGVAVNQGDYSKKFNITPPAEIFIPRKGAAIKK
Ga0209220_11235322	3300027587	Forest Soil	LLFIDSRGRVSIAVNQGNYSKKFNVEPPGTIFIPRKGAPLKER
Ga0209733_11157541	3300027591	Forest Soil	DSLLFIDSRGRVSIAVNQGNYSRKFSVEPPGTIFIPRKGAPLKER
Ga0209388_10767852	3300027655	Vadose Zone Soil	VGDSLLYVDSRGRVGIANNQGNYSKKFDVTPPATIFIPRKGSPIKGK
Ga0209388_12331061	3300027655	Vadose Zone Soil	GDSLLYVDSRGRVGIANNQGNYSKKFDVTPPATIFIPRKGVPIKGK
Ga0209139_103182142	3300027795	Bog Forest Soil	YIDSRGRLGVAVNQGDYSKKFNIKPPGEIFVPRKGAAIKGR
Ga0209701_103684771	3300027862	Vadose Zone Soil	MDVPVGESLLYVDSRGRVGIAINQGNYSKKFNLAPPGTIFIPRKGAPLKGK
Ga0209701_105562652	3300027862	Vadose Zone Soil	RGRVGIAISQGNYARKFNINPPGTIFIPRKGTPIKGK
Ga0209590_102579272	3300027882	Vadose Zone Soil	DSRGRVGIALSQGNYSRKFSITPPGTISIPRKGTPIKGK
Ga0137415_110646931	3300028536	Vadose Zone Soil	RVGIAVNQGSYSKKFNIMPPEKIFISRKGVPVKFR
Ga0311354_108812333	3300030618	Palsa	GDTLLYIDSRGRVGLAVNQGNYSEKFNVRPPGTIVIPRKASR
Ga0311354_118456781	3300030618	Palsa	LYIDSRGRLGLAVNQGNYSEKFNIRPPGTIFVPRKGAPKNKP
Ga0302324_1000870921	3300031236	Palsa	GRLGLAVNQGNYSEKFNIRPPGTIFVPRKGAPKNKP
Ga0307474_116424621	3300031718	Hardwood Forest Soil	GIAVNQGNYAKKFNVGVPGTIFIPGKHTPIPSVKR
Ga0318509_108467812	3300031768	Soil	MDVPVGDALLYVDSRGRMAVAVNQGNYSRKHDVFPPASVFIPKKNAAKQGR
Ga0307473_103221842	3300031820	Hardwood Forest Soil	GVGDALLYIDSRGRVGIAINQGNYSRKFNIVPPVSIFIPKKGASKKSK
Ga0318520_100500271	3300031897	Soil	DPLLYLDSRGRVGIAVNQGNYSKQFAVTPPGTIFIPRKGLALKSK
Ga0307479_101902493	3300031962	Hardwood Forest Soil	PVGASLLYVDSRGRVGIAVNQGNYSKKFSVEPPATLFIPRKNGAMRSK
Ga0307479_107129892	3300031962	Hardwood Forest Soil	MDVLVGGTLLYLDSRGRVGIAVNQGDYSKKFDIKPPVTIFIPRKGAPIKGK
Ga0318525_106553181	3300032089	Soil	RGRVGIAVNQGNYSKQFAVTPPGTIFIPRKGLALKSK
Ga0318577_100850951	3300032091	Soil	LYLDSRGRVGIAVNQGNYSKQFAVTPPGTIFIPRKGLALKSK
Ga0307470_115120791	3300032174	Hardwood Forest Soil	ESLLYVDSRGRVGIAVNQGSYSKKFNIAPPEKIFIPRKGVPKFR
Ga0307471_1001562762	3300032180	Hardwood Forest Soil	RVGIANNQGNYSKKFDVAPSASIFIPRKGAPIKGK
Ga0307471_1031874872	3300032180	Hardwood Forest Soil	GSVGIAINQGSYARKFNVTPPEKIFIPRKGAFVKFR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F059414

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences