Metagenome / Metatranscriptome Family F060098

Basic Information
Family ID	F060098
Family Type	Metagenome / Metatranscriptome
Number of Sequences	133
Average Sequence Length	45 residues
Representative Sequence	MDAPTLKRAASAVTMGLGGLLWLAAILFMAQTAQNSEQFSRLH
Number of Associated Samples	92
Number of Associated Scaffolds	133

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	94.74 %
% of genes near scaffold ends (potentially truncated)	98.50 %
% of genes from short scaffolds (< 2000 bps)	93.98 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (22.556 % of family members)
Environment Ontology (ENVO)	Unclassified (30.075 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (33.083 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.34% β-sheet: 0.00% Coil/Unstructured: 43.66%
Feature Viewer

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Pfam ID	Name	% Frequency in 133 Family Scaffolds
PF14334	DUF4390	79.70
PF01189	Methyltr_RsmB-F	17.29
PF02911	Formyl_trans_C	2.26
PF01327	Pep_deformylase	0.75

COG ID	Name	Functional Category	% Frequency in 133 Family Scaffolds
COG0144	16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family	Translation, ribosomal structure and biogenesis [J]	17.29
COG0223	Methionyl-tRNA formyltransferase	Translation, ribosomal structure and biogenesis [J]	2.26
COG0242	Peptide deformylase	Translation, ribosomal structure and biogenesis [J]	0.75

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	99.25 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	98.50 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	65.41 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	9.02 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	3.01 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Xanthomonadales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales	65.41 %
Ectothiorhodospiraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae	9.02 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	3.01 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	65.41 %
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	3.01 %
Thiohalomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Thiohalomonas	0.75 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	65.41 %
Steroidobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	3.01 %
Thiohalomonas denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Thiohalomonas → Thiohalomonas denitrificans	0.75 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001213\|JGIcombinedJ13530_100713041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	607	Open in IMG/M
3300003860\|Ga0031658_1032909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae	879	Open in IMG/M
3300004015\|Ga0055462_10055424	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae	1077	Open in IMG/M
3300004015\|Ga0055462_10280004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	546	Open in IMG/M
3300004049\|Ga0055493_10122508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	575	Open in IMG/M
3300004066\|Ga0055484_10073655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	799	Open in IMG/M
3300004146\|Ga0055495_10027853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1056	Open in IMG/M
3300004155\|Ga0066600_10227387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	818	Open in IMG/M
3300004156\|Ga0062589_100762122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	870	Open in IMG/M
3300004156\|Ga0062589_102082871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	578	Open in IMG/M
3300004179\|Ga0066404_1063407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	616	Open in IMG/M
3300004779\|Ga0062380_10483492	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300004808\|Ga0062381_10368992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	544	Open in IMG/M
3300005333\|Ga0070677_10103782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1258	Open in IMG/M
3300005578\|Ga0068854_101031402	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	730	Open in IMG/M
3300005618\|Ga0068864_102352167	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	539	Open in IMG/M
3300005660\|Ga0073904_10790263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	506	Open in IMG/M
3300005829\|Ga0074479_10842981	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	563	Open in IMG/M
3300005833\|Ga0074472_10484602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1464	Open in IMG/M
3300006224\|Ga0079037_100107608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae	2358	Open in IMG/M
3300006224\|Ga0079037_101130782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	777	Open in IMG/M
3300006224\|Ga0079037_101225295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	746	Open in IMG/M
3300006844\|Ga0075428_100073695	All Organisms → cellular organisms → Bacteria → Proteobacteria	3729	Open in IMG/M
3300006930\|Ga0079303_10421403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	568	Open in IMG/M
3300007004\|Ga0079218_11590677	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	715	Open in IMG/M
3300009009\|Ga0105105_10312681	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	852	Open in IMG/M
3300009053\|Ga0105095_10468569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	697	Open in IMG/M
3300009075\|Ga0105090_10389881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	850	Open in IMG/M
3300009075\|Ga0105090_10398182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	840	Open in IMG/M
3300009075\|Ga0105090_10398204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	840	Open in IMG/M
3300009075\|Ga0105090_10485903	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	751	Open in IMG/M
3300009081\|Ga0105098_10638522	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	559	Open in IMG/M
3300009085\|Ga0105103_10114270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae	1410	Open in IMG/M
3300009085\|Ga0105103_10846383	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	533	Open in IMG/M
3300009087\|Ga0105107_10430218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	920	Open in IMG/M
3300009091\|Ga0102851_11188224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	839	Open in IMG/M
3300009091\|Ga0102851_12215363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	626	Open in IMG/M
3300009091\|Ga0102851_12935320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	548	Open in IMG/M
3300009111\|Ga0115026_10416905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	977	Open in IMG/M
3300009131\|Ga0115027_10165044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae	1372	Open in IMG/M
3300009131\|Ga0115027_10404640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	955	Open in IMG/M
3300009165\|Ga0105102_10199707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae	999	Open in IMG/M
3300009165\|Ga0105102_10248932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	904	Open in IMG/M
3300009168\|Ga0105104_10390263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	773	Open in IMG/M
3300009169\|Ga0105097_10172679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae	1190	Open in IMG/M
3300009169\|Ga0105097_10292806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae	899	Open in IMG/M
3300009169\|Ga0105097_10392258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	771	Open in IMG/M
3300009169\|Ga0105097_10857535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	520	Open in IMG/M
3300009170\|Ga0105096_10076059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae	1666	Open in IMG/M
3300009170\|Ga0105096_10124055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae	1293	Open in IMG/M
3300009170\|Ga0105096_10324823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	787	Open in IMG/M
3300009179\|Ga0115028_10054133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Thiohalomonas → Thiohalomonas denitrificans	2045	Open in IMG/M
3300009430\|Ga0114938_1051286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae	1550	Open in IMG/M
3300009509\|Ga0123573_10501163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1155	Open in IMG/M
3300010412\|Ga0136852_11645833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	607	Open in IMG/M
3300010993\|Ga0139329_141133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	503	Open in IMG/M
3300013297\|Ga0157378_11448311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	730	Open in IMG/M
3300014296\|Ga0075344_1086085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	622	Open in IMG/M
3300014316\|Ga0075339_1021186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1539	Open in IMG/M
3300017965\|Ga0190266_10093350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1214	Open in IMG/M
3300017965\|Ga0190266_10700021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	632	Open in IMG/M
3300018079\|Ga0184627_10541156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	595	Open in IMG/M
3300022309\|Ga0224510_10100074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1659	Open in IMG/M
3300022396\|Ga0210364_1011397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1313	Open in IMG/M
3300024056\|Ga0124853_1212892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2668	Open in IMG/M
3300024985\|Ga0208392_1072460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	542	Open in IMG/M
3300025130\|Ga0209594_1154343	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	680	Open in IMG/M
3300025930\|Ga0207701_10851875	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	765	Open in IMG/M
3300025961\|Ga0207712_10809630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	824	Open in IMG/M
3300025964\|Ga0210127_1033088	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	616	Open in IMG/M
3300025967\|Ga0210136_1088578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	503	Open in IMG/M
3300025984\|Ga0210082_1063861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	617	Open in IMG/M
3300026068\|Ga0208657_1016270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	705	Open in IMG/M
3300026476\|Ga0256808_1018770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	899	Open in IMG/M
3300027683\|Ga0209392_1098996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	929	Open in IMG/M
3300027721\|Ga0209492_1246848	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	605	Open in IMG/M
3300027762\|Ga0209288_10178760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	689	Open in IMG/M
3300027778\|Ga0209464_10147232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	825	Open in IMG/M
3300027778\|Ga0209464_10272638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	613	Open in IMG/M
3300027885\|Ga0209450_10214602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1365	Open in IMG/M
3300027885\|Ga0209450_10404159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	996	Open in IMG/M
3300027885\|Ga0209450_11195647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	528	Open in IMG/M
3300027885\|Ga0209450_11263268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	509	Open in IMG/M
3300027887\|Ga0208980_10385920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	809	Open in IMG/M
3300027899\|Ga0209668_10904446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	595	Open in IMG/M
3300027956\|Ga0209820_1058739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1023	Open in IMG/M
3300027956\|Ga0209820_1199007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	559	Open in IMG/M
3300027975\|Ga0209391_10228134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	762	Open in IMG/M
3300028597\|Ga0247820_10718230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	698	Open in IMG/M
3300031577\|Ga0316602_10079409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	560	Open in IMG/M
3300031901\|Ga0307406_10919627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	746	Open in IMG/M
3300031908\|Ga0310900_10688257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	817	Open in IMG/M
3300032012\|Ga0310902_11229913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	528	Open in IMG/M
3300032164\|Ga0315283_10070480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	3582	Open in IMG/M
3300032164\|Ga0315283_11498423	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	691	Open in IMG/M
3300032275\|Ga0315270_11043797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	542	Open in IMG/M
3300032397\|Ga0315287_10276254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1976	Open in IMG/M
3300032397\|Ga0315287_12608904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	540	Open in IMG/M
3300032397\|Ga0315287_12731313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	524	Open in IMG/M
3300033413\|Ga0316603_10588228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1031	Open in IMG/M
3300033414\|Ga0316619_10151000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1597	Open in IMG/M
3300033414\|Ga0316619_11085488	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	701	Open in IMG/M
3300033416\|Ga0316622_100044866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	4105	Open in IMG/M
3300033416\|Ga0316622_101507116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	785	Open in IMG/M
3300033418\|Ga0316625_100747830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	829	Open in IMG/M
3300033418\|Ga0316625_100749783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	828	Open in IMG/M
3300033418\|Ga0316625_102366055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	533	Open in IMG/M
3300033419\|Ga0316601_100083959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2513	Open in IMG/M
3300033419\|Ga0316601_100301000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1467	Open in IMG/M
3300033419\|Ga0316601_102011042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	582	Open in IMG/M
3300033434\|Ga0316613_10515889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	812	Open in IMG/M
3300033434\|Ga0316613_10560644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	778	Open in IMG/M
3300033434\|Ga0316613_10804449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	645	Open in IMG/M
3300033480\|Ga0316620_11849017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	600	Open in IMG/M
3300033481\|Ga0316600_10072544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2013	Open in IMG/M
3300033481\|Ga0316600_10340922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1017	Open in IMG/M
3300033483\|Ga0316629_10200437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1266	Open in IMG/M
3300033485\|Ga0316626_10800907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	826	Open in IMG/M
3300033487\|Ga0316630_10263474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1307	Open in IMG/M
3300033487\|Ga0316630_10529476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	970	Open in IMG/M
3300033487\|Ga0316630_11264185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	657	Open in IMG/M
3300033487\|Ga0316630_11838172	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	554	Open in IMG/M
3300033488\|Ga0316621_10442088	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	896	Open in IMG/M
3300033488\|Ga0316621_11311291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	550	Open in IMG/M
3300033521\|Ga0316616_101452093	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	886	Open in IMG/M
3300033521\|Ga0316616_102299781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	719	Open in IMG/M
3300033557\|Ga0316617_101196936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	754	Open in IMG/M
3300033557\|Ga0316617_101784356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	628	Open in IMG/M
3300034052\|Ga0373889_071423	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	560	Open in IMG/M
3300034053\|Ga0373890_031138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	796	Open in IMG/M
3300034055\|Ga0373892_026009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	735	Open in IMG/M
3300034056\|Ga0373893_061096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	529	Open in IMG/M
3300034080\|Ga0373897_079118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	639	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.23%
Host-Associated	Host-Associated	5.26%
Engineered	Engineered	4.51%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	57.14%
Terrestrial	Environmental → Terrestrial	33.08%
Plants	Host-Associated → Plants	5.26%
Bioremediation	Engineered → Bioremediation	3.76%
Wastewater	Engineered → Wastewater	0.75%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	45.11%
Soil	Environmental → Terrestrial → Soil	32.33%
Marine	Environmental → Aquatic → Marine	8.27%
Sediment	Environmental → Aquatic → Sediment	3.76%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.76%
Metal	Engineered → Bioremediation → Metal	3.76%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.50%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.75%
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.75%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	25.56%
Sediment	Environmental → Aquatic → Freshwater → Sediment	24.06%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	9.77%
Wetlands	Environmental → Aquatic → Marine → Wetlands	6.77%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	6.77%
Lentic	Environmental → Aquatic → Freshwater → Lentic	4.51%
Lake	Environmental → Aquatic → Freshwater → Lake	4.51%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.76%
Unclassified	Engineered → Bioremediation → Metal → Unclassified	3.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.01%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.50%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.50%
Pond	Environmental → Aquatic → Freshwater → Pond	0.75%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.75%
Sediment	Environmental → Aquatic → Marine → Sediment	0.75%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.75%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.75%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	25.56%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	24.06%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	8.27%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	5.26%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	4.51%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	4.51%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.76%
Unclassified	Engineered → Bioremediation → Metal → Unclassified → Unclassified	3.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.01%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.26%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.26%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.50%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.50%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	1.50%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	1.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.50%
Sediment	Environmental → Aquatic → Freshwater → Pond → Sediment	0.75%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.75%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	0.75%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.75%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.75%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	22.56%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	19.55%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	5.26%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	5.26%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	4.51%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	4.51%
Sediment Slurry	Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry	3.76%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	3.01%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	3.01%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	3.01%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.26%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment	1.50%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	1.50%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	1.50%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	1.50%
Mangrove Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment	1.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.50%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.75%
Freshwater	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater	0.75%
Freshwater	Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater	0.75%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.75%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	0.75%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.75%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	0.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.75%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.75%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	0.75%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300003860	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL	Environmental	Open in IMG/M
3300004015	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqC_D1	Environmental	Open in IMG/M
3300004049	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLC_D2	Environmental	Open in IMG/M
3300004066	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_CattailNLC_D2	Environmental	Open in IMG/M
3300004146	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleB_D2	Environmental	Open in IMG/M
3300004155	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Low cellulose week 11	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004179	Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 4_LOW4	Environmental	Open in IMG/M
3300004779	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh	Environmental	Open in IMG/M
3300004808	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare1Fresh	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005660	Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB14_precipitate	Engineered	Open in IMG/M
3300005829	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBC	Environmental	Open in IMG/M
3300005833	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBK	Environmental	Open in IMG/M
3300006224	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006930	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanogen_OWC	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009009	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm September2015	Environmental	Open in IMG/M
3300009053	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009075	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015	Environmental	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009085	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009087	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009131	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1	Environmental	Open in IMG/M
3300009165	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015	Environmental	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009169	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009170	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300009179	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1	Environmental	Open in IMG/M
3300009430	Groundwater microbial communities from Big Spring, Nevada to study Microbial Dark Matter (Phase II) - Ash Meadows Big Spring	Environmental	Open in IMG/M
3300009509	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_11	Environmental	Open in IMG/M
3300010412	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_10	Environmental	Open in IMG/M
3300010993	ECM15MPS05_Bassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method B (2X150bp)	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014296	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqC_D1	Environmental	Open in IMG/M
3300014316	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_CattailNLC_D1	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300022309	Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_4_1	Environmental	Open in IMG/M
3300022396	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States ? S.633 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024056	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300024985	Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 3_LOW4 (SPAdes)	Environmental	Open in IMG/M
3300025130	Groundwater microbial communities from Big Spring, Nevada to study Microbial Dark Matter (Phase II) - Ash Meadows Crystal Spring (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025964	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025967	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025984	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - White_ThreeSqA_D2 (SPAdes)	Environmental	Open in IMG/M
3300026068	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleC_D1 (SPAdes)	Environmental	Open in IMG/M
3300026476	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 PR6	Environmental	Open in IMG/M
3300027683	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027721	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027762	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300027778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare1Fresh (SPAdes)	Environmental	Open in IMG/M
3300027885	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW (SPAdes)	Environmental	Open in IMG/M
3300027887	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk	Environmental	Open in IMG/M
3300027899	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)	Environmental	Open in IMG/M
3300027956	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027975	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300031577	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_CT	Environmental	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032164	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0	Environmental	Open in IMG/M
3300032275	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_bottom	Environmental	Open in IMG/M
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental	Open in IMG/M
3300033413	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_noCT	Environmental	Open in IMG/M
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300033418	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A	Environmental	Open in IMG/M
3300033419	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCT	Environmental	Open in IMG/M
3300033434	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_CT_b	Environmental	Open in IMG/M
3300033480	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B	Environmental	Open in IMG/M
3300033481	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_CT	Environmental	Open in IMG/M
3300033483	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D1_A	Environmental	Open in IMG/M
3300033485	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D5_A	Environmental	Open in IMG/M
3300033487	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_A	Environmental	Open in IMG/M
3300033488	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D1_C	Environmental	Open in IMG/M
3300033521	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B	Environmental	Open in IMG/M
3300033557	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B	Environmental	Open in IMG/M
3300034052	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A1A4.2	Engineered	Open in IMG/M
3300034053	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A1A4.3	Engineered	Open in IMG/M
3300034055	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A3A4.2	Engineered	Open in IMG/M
3300034056	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A3A4.3	Engineered	Open in IMG/M
3300034080	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A5A4.1	Engineered	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F060098

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ13530_1007130411	3300001213	Wetland	MAASPLKRAFSVGIVGLGGLLWLAAILFMVQTAQNSEQF
Ga0031658_10329093	3300003860	Freshwater Lake Sediment	MALPTLNRAVSAVVMGVGGLLWLAAILFMAQTAQNSEQFSRLHPWILMINVAG
Ga0055462_100554243	3300004015	Natural And Restored Wetlands	MAASPLKRAFSVGLIGLGGLLWLAAILFMVQTAQNSEQFSRLHPWILGINVA
Ga0055462_102800042	3300004015	Natural And Restored Wetlands	MAASPLKRAFSVGLIGLGGVLWLAAILFMAQTAQNSAQFSRLHPWILGI
Ga0055493_101225082	3300004049	Natural And Restored Wetlands	MDAPSLRRTATAVVIGSGGLLWLAAILFMAQTAQHSAQFSRL
Ga0055484_100736552	3300004066	Natural And Restored Wetlands	MDAPSLTRAASAVVMGIGGLLWLSALLFMAQTAQNSEQFSRLHPWILLIN
Ga0055495_100278531	3300004146	Natural And Restored Wetlands	MDAPSLTRAASAVVMGIGGLLWLSALLFMAQTAQNSEQFSRLHPWILL
Ga0066600_102273872	3300004155	Freshwater	MDAPTLKRAASAVTMGLGGLLWLAAILFMAQTAQNSEQFSRLHPWILAINIA
Ga0062589_1007621223	3300004156	Soil	MDTATLRRAGSAALMGIGGLLWLSAILFMAQTAQNSEQFGRLHPWILMVN
Ga0062589_1020828711	3300004156	Soil	MDAASLRRAASAVLMGIGGLLWLAAILFMAQTAQNSEQFGRLHPWILMVN
Ga0066404_10634072	3300004179	Freshwater	MDAPTLKRAASAVTMGLGGLLWLAAILFMAQTAQNSEQFSRLHPWILGINIAG
Ga0062380_104834922	3300004779	Wetland Sediment	MATSSLSRAFSVALMGVGGLLWLAAILFMAQTAQNSEQFSRLHPWILGINVAGIAVLVV
Ga0062381_103689921	3300004808	Wetland Sediment	MATASLSRVFSVVLMGVGGLLWLAAILFMAQTAQNSEQFS
Ga0070677_101037823	3300005333	Miscanthus Rhizosphere	MDTATLRRAGSAALMGIGGLLWLSAILFMAQTAQNSEQFG
Ga0068854_1010314021	3300005578	Corn Rhizosphere	MDAASVRRAASAVLMGIGGLLWLAAILFMAQTAQNSEQF
Ga0068864_1023521671	3300005618	Switchgrass Rhizosphere	MDAPTLKRAASAITVGIGGLLWLAAILFMAQTAQNS
Ga0073904_107902632	3300005660	Activated Sludge	MDAPTLKRAASAVTMGLGGLLWLAAILFMAQTAQNSEQFSRLHPWILAI
Ga0074479_108429812	3300005829	Sediment (Intertidal)	MAAPSLNRALSAGLMGLGGLLWLAAILFMAQTAQNSSQFSRLHPWILGIN
Ga0074472_104846021	3300005833	Sediment (Intertidal)	MDAPTLKRAANAAVMGIGGLLWLAAILFMAQTAQNS
Ga0079037_1001076084	3300006224	Freshwater Wetlands	MDAPTLRRAVAAVAIGGGGLLWLSAILFMARTAQHSEPFSRLHPWILAINIAGL
Ga0079037_1011307821	3300006224	Freshwater Wetlands	MDTPTLRRAASMVVIGLGGLLWLAAILFMAQTAQHSEQFSRLH
Ga0079037_1012252951	3300006224	Freshwater Wetlands	MDTPSLSRAASMIVVGLGGLLWLAAILFMAQTAQH
Ga0075428_1000736951	3300006844	Populus Rhizosphere	MDAASLRRAGSAALMGIGGLLWLAAILFMAQTAQNSEQFG
Ga0079303_104214032	3300006930	Deep Subsurface	MAASPLKRAFSVGIVGLGGLLWLAAILFMVQTAQNSEQFSRLHPW
Ga0079218_115906771	3300007004	Agricultural Soil	MKRYAVSFVMAIGGLLWLAAILFMAQTAQNSEQFGR
Ga0105105_103126811	3300009009	Freshwater Sediment	VDAPALKRAASAVIMGLGGLLWLAAILFMAQTAQNSEQFSRLHPWILGINIAGLV
Ga0105095_104685692	3300009053	Freshwater Sediment	MDAPSLKRAASAVVIGFGGLLWLAAILFMAQTAQNSEQFSRLHPWILMINV
Ga0105090_103898811	3300009075	Freshwater Sediment	MDAATLKRAASAIVIGVGGLLWLSAILFMAQTAQHSEQFSRWHPWILMINV
Ga0105090_103981821	3300009075	Freshwater Sediment	MDAPTLKRAASAVTMGLGGLLWLAAILFMAQTAQNSEQFSRLHPWILGINIAGL
Ga0105090_103982041	3300009075	Freshwater Sediment	MDAPTLKRAASAVIMGLGGLLWLAAILFMAQTAQNSEQFSRLHPWILGINIAGL
Ga0105090_104859032	3300009075	Freshwater Sediment	MDAAALKRAASAVVIGAGGLLWLAAILFMAQTAQNSDQF
Ga0105098_106385222	3300009081	Freshwater Sediment	MDAPSLSRAASMIVIGLGGLLWLAAILFMAQTAQHSEQFSRL
Ga0105103_101142701	3300009085	Freshwater Sediment	MDAPSLKRAASAVVIGFGGLLWLAAILFMAQTAQNSEQF
Ga0105103_108463831	3300009085	Freshwater Sediment	MDAPSLKRAASAVVIGSGGLLWLAAILFMAQTAQNSEQFSRLHPWILMINVAGL
Ga0105107_104302181	3300009087	Freshwater Sediment	MDAPSLKRAASAVVIGFGGLRWLAAILFMAQTAQNSEQFSRLHPW
Ga0102851_111882243	3300009091	Freshwater Wetlands	MDTPTLSRAASMVVIGLGGLLWLAAILFMAQTAQHSEQFS
Ga0102851_122153632	3300009091	Freshwater Wetlands	MDAAALRRAASAAVIGIGGLLWLSAILFMAQTAQHSEQFSRLHPWILMINIA
Ga0102851_129353201	3300009091	Freshwater Wetlands	MDTPSLSRAASMVVIGLGGLLWLAAILFMAQTAQHSEQFSRLHPW
Ga0115026_104169053	3300009111	Wetland	MDAPAIKRAASAVVIGFGGLLWLAAILFMAQTAQNSEQF
Ga0115027_101650441	3300009131	Wetland	MDAATLKRAASAIVIGVGGLLWLSAILFMAQTAQHSEQFSRWHPWILMINVAGLVVLV
Ga0115027_104046403	3300009131	Wetland	MDAPTLKRAASAATMGLGGLLWLAAILFMAQTAQNSEQF
Ga0105102_101997071	3300009165	Freshwater Sediment	MDAPALRRVAVAAAMGVGGLLWLSAILLMARTAQHAEPFSQLHPW
Ga0105102_102489321	3300009165	Freshwater Sediment	MDAATLKRAASAVVIGVGGLLWLSAILFMAQTAQHSEQFSR
Ga0105104_103902632	3300009168	Freshwater Sediment	MDAPALRRAAVAAAMGVGGLLWLSAILLMARTAQHAEPFSQLHPWI
Ga0105097_101726791	3300009169	Freshwater Sediment	MDAPALRRAAAAAAMGVGGLLWLSAILFMARTAQHSEPFSRLHPWILMINVA
Ga0105097_102928063	3300009169	Freshwater Sediment	MDAPTLKRAASAVVVGVGGLLWLAAILFMAQTAQNSE
Ga0105097_103922581	3300009169	Freshwater Sediment	MDAPSLKRAASAVVIGFGGLLWLAAILFMAQTAQNSEQFSR
Ga0105097_108575351	3300009169	Freshwater Sediment	MDAATLKRAASAVVVGVGGLLWLAAILFMAQTAQNSEQFSR
Ga0105096_100760591	3300009170	Freshwater Sediment	MDAATLKRAASAVVIGVGGLLWLSAILFMAQTAQHSEQFSRWHPWILMI
Ga0105096_101240551	3300009170	Freshwater Sediment	MDAPALRRAAAAAAMGVGGLLWLSAILFMARTAQHSEPFSRLHPW
Ga0105096_103248232	3300009170	Freshwater Sediment	MDAPTLKRAASAVIMGLGGLLWLAAILFMAQTAQKSEQISRLHPWNPR
Ga0115028_100541331	3300009179	Wetland	MDAATLKRAASAIVIGVGGLLWLSAILFMAQTAQHSEQFSRWHPWILMI
Ga0114938_10512863	3300009430	Groundwater	MDASSLRKAAAAAAMSVGGLLWLSAILFMARTAQHSEPFSRLH
Ga0123573_105011631	3300009509	Mangrove Sediment	MDTPTLNRAVSAVVIGVGGLLWLSAILFMAYTAQHS
Ga0136852_116458332	3300010412	Mangrove Sediment	MDTPSLSRTVSAAVIVLGGLLWFAAILFMAQTAQHSE
Ga0139329_1411331	3300010993	Sediment	MERTALKRAASAAVIGVGGLLWLAAILFMVQTAQNSEQF
Ga0157378_114483111	3300013297	Miscanthus Rhizosphere	MDAPTLKRAASAITVGIGGLLWLAAILFMAQTAQNSSQ
Ga0075344_10860851	3300014296	Natural And Restored Wetlands	MAGSPLKRALSAGLIGLGGLLWLAAILFMVQTAQNSEQFSRLHPWIL
Ga0075339_10211863	3300014316	Natural And Restored Wetlands	MAASPLKRAFSVGLIGLGGVLWLAAILFMAQTAQNSAQFSRLH
Ga0190266_100933501	3300017965	Soil	MDTATLRRAGSAALMGIGGLLWLSAILFMAQTAQNSEQFGRLHPWILM
Ga0190266_107000211	3300017965	Soil	MDAPSLKRAASAVTIGIGGLLWLAAILSMAQTAQNSEQFSRLH
Ga0184627_105411561	3300018079	Groundwater Sediment	MDAAALKRGASSVLMGVGGLLWLAAILFMAQTAQNSEQV
Ga0224510_101000743	3300022309	Sediment	MDAPSLSRAASAVVMGIGGLLWLSALLFMAQTAQNSEQ
Ga0210364_10113971	3300022396	Estuarine	MDAPSLTRAASAVVMGIGGLLWLSALLFMAQTAQNSE
Ga0124853_12128922	3300024056	Freshwater Wetlands	MDAPSLNRTASLVVIGGGGLLWLSAILFMAQTAQHSAQFSRLHPWILMSTWRAWWCCSAC
Ga0208392_10724602	3300024985	Freshwater Sediment	MDAPTLKRAASAVTMGLGGLLWLAAILFMAQTAQNSEQFSRLH
Ga0209594_11543432	3300025130	Groundwater	MDTPTLSRAASMVVIGLGGLLWLAAILFMAQTAQHSEQFSRLHPWI
Ga0207701_108518752	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MDAPTLKRAVSAVTMGLGGLLWLAAILFMAQTAQNSEQFSRLHPWILAI
Ga0207712_108096301	3300025961	Switchgrass Rhizosphere	MDAASLRRAASAVLMGIGGLLWLAAILFMAQTAQNSEQFGRLHPW
Ga0210127_10330882	3300025964	Natural And Restored Wetlands	MDAPSLTRAASAVVMGIGGLLWLSALLFMAQTAQNSEQFSRLHPWILLINVVGL
Ga0210136_10885781	3300025967	Natural And Restored Wetlands	MAAPTLKRALAAGLMGLGGLLWLAAILFMAQTAQNSTQFSRLHPWIL
Ga0210082_10638611	3300025984	Natural And Restored Wetlands	MDAPSLSRAASAVVMGIGGLLWLSALLFMAQTAQNSEQFSR
Ga0208657_10162702	3300026068	Natural And Restored Wetlands	MDASSLRGATAAAAMSVGGLLWLSAILFMARTAQHSEPFSRLHPW
Ga0256808_10187701	3300026476	Sediment	MDTPTLSRTASMVVIGLGGLLWLAAILFMAQTAQHSEQFSRLHPWILMI
Ga0209392_10989961	3300027683	Freshwater Sediment	MDAPALRRAAAAAAMGVGGLLWLSAILFMARTAQHSA
Ga0209492_12468481	3300027721	Freshwater Sediment	MDTPTLSRAASMIVIGLGGLLWLAAILFMAQTAQHSEQFSRLHPWI
Ga0209288_101787601	3300027762	Freshwater Sediment	VEDVDAPALKRAASAVIMGLGGLLWLAAILFMAQTAQNSEQFSRLHPWILGINI
Ga0209464_101472323	3300027778	Wetland Sediment	MATASLSRVFSVVLMGVGGLLWLAAILFMAQTAQNSEQFSRLHPW
Ga0209464_102726381	3300027778	Wetland Sediment	MAAPTLKRALAAGLMGLGGLLWLAAILFMAQTAQNS
Ga0209450_102146023	3300027885	Freshwater Lake Sediment	MAASSVSRALFIALAGVGGLLWLAAILFMAQTAQNSEQFSRLHPWILGINVAGI
Ga0209450_104041591	3300027885	Freshwater Lake Sediment	MDAPTLKRAANAAVMGVGGLLWLAAILFMAQTAQNSEQF
Ga0209450_111956472	3300027885	Freshwater Lake Sediment	MDAASLKRAASAIVIGVGGLLWLSAILFMAQTAQHSEQFSRWHPW
Ga0209450_112632681	3300027885	Freshwater Lake Sediment	MDAPTLRRAAAAAAIGGGGLLWLSAILFMARTAQHSEPFS
Ga0208980_103859202	3300027887	Wetland	MAAVTLKRAFSTGLMGLGGLLWLAAILFMAQTAQNSEQFSRLHPWILGI
Ga0209668_109044462	3300027899	Freshwater Lake Sediment	MDAPALKRAASAVTVGLGGLLWLAAILFMAQTAQNSEQFSRLHPWILGINIA
Ga0209820_10587393	3300027956	Freshwater Sediment	VENVDTPALKRAATAVTMGLGGLLWLAAILFMAQTAQNSE
Ga0209820_11990071	3300027956	Freshwater Sediment	MDAPTLSRAASMVVIGLGGLLWLTAILFMAQTAQHSEQFSRLHPWILMINVAGLV
Ga0209391_102281341	3300027975	Freshwater Sediment	MDAAALKRAASAVVIGAGGLLWLAAILFMAQTAQNSDQFSRLH
Ga0247820_107182301	3300028597	Soil	MDAPTLKRAASAVVMGVGGLLWLAAILFMAQTAQNSEQFSRLHPWILMI
Ga0316602_100794091	3300031577	Soil	MDVASLRRAVSVIAIGGGGLLWLSAILFMAQTAQHSEQFSRLHPWILMI
Ga0307406_109196271	3300031901	Rhizosphere	MDAPALKRAASTVIVGIGGLLWLAAILFMAQTAQNSEQFSRLHPW
Ga0310900_106882571	3300031908	Soil	MRRYASTVLIGIGGLLWLAAILFMAQTAQNSDQFGRL
Ga0310902_112299132	3300032012	Soil	MDAPSLKRAASAATMGIGGLLWLAAILSMAQTAQNSEQ
Ga0315283_100704801	3300032164	Sediment	MAAPSVTRFLSVALVAVGGLLWLAAILFMVQTAQNSEQFSRLHPWILGINIAGIAVL
Ga0315283_114984232	3300032164	Sediment	MAAPFLSRAFSAALMGIGGLLWLSAILFMAQTAQNSEQFSRLHPGS
Ga0315270_110437971	3300032275	Sediment	MATSSLSRAFSVALMGVGGLLWLAAILFMAQTAQNS
Ga0315287_102762541	3300032397	Sediment	VDAPTLKRAANAAVMGVGGLLWLAVILFMAQTAQNS
Ga0315287_126089042	3300032397	Sediment	MAAASLSRVLSVVLMGVGGLLWLVAILFMAQTAQNSE
Ga0315287_127313131	3300032397	Sediment	MENMDARTLKRAAAAVTMGLGGLLWLAAILFMAQTAQNSEQFSRLHPWILGINI
Ga0316603_105882281	3300033413	Soil	VVRVDAPTLRRAAAAAAIGGGGLLWLSAILFMARTAQHSEPFSRLHPWI
Ga0316619_101510001	3300033414	Soil	MAASSVSRAFSIALMGVGGLLWLAAILFMAQTAQNSEQFSRLHPWILGINMAGI
Ga0316619_110854881	3300033414	Soil	MDTSSLRRAAAAAAMSIGGLLWLSAILLMARTAQHSEPFSELHPWILLIN
Ga0316622_1000448661	3300033416	Soil	MDAPTLKRAASAVTMGLGGLLWLAAILFMAQTAQNS
Ga0316622_1015071161	3300033416	Soil	MDTPSLKSAAWMTVVGLGGLLWLAAILFMAQTAQHSEQFSRLHPWILM
Ga0316625_1007478303	3300033418	Soil	MAAPTLKRAFSIAFIGLGGLLWLAAILFMVQTAQNSAQFG
Ga0316625_1007497832	3300033418	Soil	MALPTLNRAVSVVVMGVGGLLWLAAILFMAQTAQNSEQFSRLHPWILMINVAGL
Ga0316625_1023660551	3300033418	Soil	MATSPVSRAFSIVLMGVGGLLWLAAILFMAQTAQNSEQFSRLHPWIL
Ga0316601_1000839591	3300033419	Soil	MDAPTLKRAASAVVVGVGGLLWLAAILFMAQTAQN
Ga0316601_1003010003	3300033419	Soil	MDAPTLRRAVAAVAIGGGGLLWLSAILFMARTAQHSEPFSRLHPWILAINIAGLAVLLGLLATK
Ga0316601_1020110422	3300033419	Soil	MDTSSLRRAAAAAAMSVGGLLWLSAILLMARTAQHSEPFSQLHPWILLINV
Ga0316613_105158893	3300033434	Soil	MDAPSLKRTLSAVVIVLGGVLWLAAILFMAQTAQHSEQFSRLH
Ga0316613_105606442	3300033434	Soil	MDAPTLRRAAAAAAIGGGGLLWLSAILFMARTAQHSEPFSRLHP
Ga0316613_108044492	3300033434	Soil	MDAPSLKRAASAAVMGIGGLLWLSAILFMAQTAQNSEQFSRLHPWILMIN
Ga0316620_118490171	3300033480	Soil	MDTPSLSRAASMIVVGLGGLLWLAAILFMAQTAQHSEQFSRLHPW
Ga0316600_100725443	3300033481	Soil	MDAPSLRKAAAAAAMGVGGLLWLSAILFMARTAQHSEPFSRLHPW
Ga0316600_103409221	3300033481	Soil	MALPTLNRAVSVVVMGVGGLLWLAAILFMAQTAQNSEQFSRLHPWIL
Ga0316629_102004373	3300033483	Soil	MATSPVSRAFSIVLMGVGGLLWLAAILFMAQTAQNSEQF
Ga0316626_108009071	3300033485	Soil	MDTSSLRRAAAAAAMSVGGLLWLSAILLMARTAQHSEPFSQLHPWIL
Ga0316630_102634741	3300033487	Soil	MDTPSLSRAASMVVIGLGGLLWLAAILFMAQTAQHSAQFSRLHP
Ga0316630_105294763	3300033487	Soil	MDTSSLRRAAAAAAMSVGGLLWLSAILLMARTAQHSEPFSQLHPWILLIN
Ga0316630_112641852	3300033487	Soil	MAASALSRAFSTALVGLGGLLWLAAILFMAQTAQNSEQFSRLHPWILGINVAGLVMLVGL
Ga0316630_118381721	3300033487	Soil	MDAPTLKRAASAAVMGIGGLLWLAAILFMAQTAQNSEQFSR
Ga0316621_104420883	3300033488	Soil	MDAAALRRAASAAVIGIGGLLWLSAILFMAQTAQHSEQFSRLHPWILMIN
Ga0316621_113112911	3300033488	Soil	MDAASLRRAASVVAIGGGGLLWLSAILFMAQTAQHSEQFSRLHPWILMINVAGL
Ga0316616_1014520931	3300033521	Soil	MDAPSLRRTASLVVIGCGGLLWLSAILFMAQTAQHSAQ
Ga0316616_1022997812	3300033521	Soil	MDTSSLRRAAAAAAMSIGGLLWLSAILLMARTAQHSEPFSELHPW
Ga0316617_1011969362	3300033557	Soil	MDAPTLRRAATAVTMGLGGLLWLAAILFMAQTAQNSEQFSRLH
Ga0316617_1017843561	3300033557	Soil	MDTPSLSRTASMVVIGLGGLLWLAAILFMAQTAQHSEQFSRLHPWILMIN
Ga0373889_071423_407_559	3300034052	Sediment Slurry	MDTPSLSRTVSAAVIVIGGLLWFAAILFMAQTAQNSEQFSRLHPWILAINV
Ga0373890_031138_650_796	3300034053	Sediment Slurry	MDAPALRRVVSLVVIGLGGLLWLAAILFMAQTAQHSEQFSRLHPWILMI
Ga0373892_026009_616_735	3300034055	Sediment Slurry	MDAATLKRAVSAIVIGVGGLLWLSAILFMAQTAQHSEQFS
Ga0373893_061096_3_134	3300034056	Sediment Slurry	MDTPALKRAASAVVIGAGGLLWLAAILFMAQTAQNSEQFSRLHP
Ga0373897_079118_462_638	3300034080	Sediment Slurry	MDTPSLSRTVSAAVIVLGGLLWFAAIMFMAQTAQHSEQFSRLHPWILMINVAGLVVLVG

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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