Metagenome / Metatranscriptome Family F060145

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F060145
Family Type	Metagenome / Metatranscriptome
Number of Sequences	133
Average Sequence Length	65 residues
Representative Sequence	AEDPGSPAFTMVVRDINAAVDQWTKAGGTVATTGGKAIVRANGAGNVFVRDVNGLMWELIQRPAQ
Number of Associated Samples	116
Number of Associated Scaffolds	133

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	3.76 %
% of genes near scaffold ends (potentially truncated)	96.24 %
% of genes from short scaffolds (< 2000 bps)	90.98 %
Associated GOLD sequencing projects	101
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.77

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (69.173 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere (5.263 % of family members)
Environment Ontology (ENVO)	Unclassified (44.361 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (53.383 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 10.75% β-sheet: 22.58% Coil/Unstructured: 66.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.77
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.77
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
d.32.1.6: Hypothetical protein BC1747	d1ss4a1	1ss4	0.73127
d.32.1.1: Glyoxalase I (lactoylglutathione lyase)	d1fa8a_	1fa8	0.72828
d.32.1.0: automated matches	d3hdpa_	3hdp	0.71362
d.32.1.0: automated matches	d4naza1	4naz	0.69178
d.32.1.0: automated matches	d3l20a1	3l20	0.69069

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 133 Family Scaffolds
PF12681	Glyoxalase_2	7.52
PF00903	Glyoxalase	6.02
PF13360	PQQ_2	3.01
PF13442	Cytochrome_CBB3	2.26
PF13570	PQQ_3	1.50
PF01322	Cytochrom_C_2	1.50
PF09980	DUF2214	1.50
PF04909	Amidohydro_2	1.50
PF07676	PD40	1.50
PF07519	Tannase	1.50
PF00106	adh_short	0.75
PF13432	TPR_16	0.75
PF13857	Ank_5	0.75
PF00534	Glycos_transf_1	0.75
PF00034	Cytochrom_C	0.75
PF02276	CytoC_RC	0.75
PF04480	DUF559	0.75
PF08669	GCV_T_C	0.75
PF11154	DUF2934	0.75
PF04455	Saccharop_dh_N	0.75
PF00664	ABC_membrane	0.75
PF13414	TPR_11	0.75
PF00313	CSD	0.75
PF12543	DUF3738	0.75
PF13499	EF-hand_7	0.75
PF07690	MFS_1	0.75
PF03928	HbpS-like	0.75
PF08530	PepX_C	0.75
PF04545	Sigma70_r4	0.75
PF00326	Peptidase_S9	0.75
PF06439	3keto-disac_hyd	0.75
PF13443	HTH_26	0.75

COG ID	Name	Functional Category	% Frequency in 133 Family Scaffolds
COG3909	Cytochrome c556	Energy production and conversion [C]	1.50
COG1915	Uncharacterized conserved protein AF1278, contains saccharopine dehydrogenase N-terminal (SDHN) domain	Function unknown [S]	0.75
COG2936	Predicted acyl esterase	General function prediction only [R]	0.75

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	69.17 %
Unclassified	root	N/A	30.83 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	69.17 %
Unclassified	root	N/A	30.83 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	69.17 %
Unclassified	root	N/A	30.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.83 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	23.31 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	12.78 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7.52 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.76 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	3.01 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.75 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.75 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.83 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.01 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.01 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.26 %
Caulobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	2.26 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1.50 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.75 %
unclassified Terriglobia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia	0.75 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.75 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.75 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.01 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.26 %
unclassified Caulobacterales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → unclassified Caulobacterales	1.50 %
Devosiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae	1.50 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.75 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.75 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.75 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.75 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.75 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.75 %
Bryobacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	0.75 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.01 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.26 %
Pelagibacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Pelagibacterium	1.50 %
Caulobacterales bacterium 32-69-10	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → unclassified Caulobacterales → Caulobacterales bacterium 32-69-10	1.50 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.75 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	0.75 %
unclassified Oxalobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae	0.75 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.75 %
Bryobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter	0.75 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.75 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.75 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.01 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.26 %
Pelagibacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Pelagibacterium	1.50 %
Caulobacterales bacterium 32-69-10	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → unclassified Caulobacterales → Caulobacterales bacterium 32-69-10	1.50 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	0.75 %
unclassified Edaphobacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → unclassified Edaphobacter	0.75 %
Oxalobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium	0.75 %
Bryobacter aggregatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	0.75 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.75 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.75 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.75 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.01 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.26 %
Pelagibacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Pelagibacterium	1.50 %
Caulobacterales bacterium 32-69-10	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → unclassified Caulobacterales → Caulobacterales bacterium 32-69-10	1.50 %
Candidatus Sulfopaludibacter sp. SbA3	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	0.75 %
Edaphobacter sp. 12200R-103	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → unclassified Edaphobacter → Edaphobacter sp. 12200R-103	0.75 %
Oxalobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium	0.75 %
Bryobacter aggregatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	0.75 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.75 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.75 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.75 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.75 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10058268	All Organisms → cellular organisms → Bacteria	2011	Open in IMG/M
3300001139\|JGI10220J13317_10454145	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300001356\|JGI12269J14319_10109379	All Organisms → cellular organisms → Bacteria	1321	Open in IMG/M
3300001848\|RCM47_1150281	Not Available	603	Open in IMG/M
3300003432\|JGI20214J51088_11078807	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300004015\|Ga0055462_10279369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	546	Open in IMG/M
3300004463\|Ga0063356_105229482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	557	Open in IMG/M
3300005293\|Ga0065715_11106515	All Organisms → cellular organisms → Bacteria → Acidobacteria	518	Open in IMG/M
3300005331\|Ga0070670_101902929	Not Available	548	Open in IMG/M
3300005332\|Ga0066388_106956702	Not Available	569	Open in IMG/M
3300005338\|Ga0068868_100600161	All Organisms → cellular organisms → Bacteria	975	Open in IMG/M
3300005340\|Ga0070689_100918769	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300005354\|Ga0070675_100215237	All Organisms → cellular organisms → Bacteria	1672	Open in IMG/M
3300005406\|Ga0070703_10391248	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300005437\|Ga0070710_10940935	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300005438\|Ga0070701_10604033	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300005456\|Ga0070678_100722551	All Organisms → cellular organisms → Bacteria	899	Open in IMG/M
3300005530\|Ga0070679_101815538	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300005533\|Ga0070734_10003343	All Organisms → cellular organisms → Bacteria	16997	Open in IMG/M
3300005538\|Ga0070731_10264024	All Organisms → cellular organisms → Bacteria	1143	Open in IMG/M
3300005538\|Ga0070731_10936376	Not Available	574	Open in IMG/M
3300005541\|Ga0070733_11063481	Not Available	543	Open in IMG/M
3300005543\|Ga0070672_100093309	All Organisms → cellular organisms → Bacteria	2431	Open in IMG/M
3300005543\|Ga0070672_102114977	Not Available	507	Open in IMG/M
3300005563\|Ga0068855_101415159	Not Available	716	Open in IMG/M
3300005577\|Ga0068857_102235852	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300005610\|Ga0070763_10624663	Not Available	626	Open in IMG/M
3300005616\|Ga0068852_102085918	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300005617\|Ga0068859_100822226	All Organisms → cellular organisms → Bacteria	1016	Open in IMG/M
3300005617\|Ga0068859_101720509	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300005764\|Ga0066903_106519039	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300005836\|Ga0074470_11108468	Not Available	603	Open in IMG/M
3300005843\|Ga0068860_100787407	All Organisms → cellular organisms → Bacteria	964	Open in IMG/M
3300006162\|Ga0075030_101535417	All Organisms → cellular organisms → Bacteria → Acidobacteria	521	Open in IMG/M
3300006176\|Ga0070765_101464296	Not Available	643	Open in IMG/M
3300006237\|Ga0097621_101441274	Not Available	653	Open in IMG/M
3300006871\|Ga0075434_101514605	Not Available	680	Open in IMG/M
3300006881\|Ga0068865_101747775	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300009093\|Ga0105240_10559107	Not Available	1265	Open in IMG/M
3300009148\|Ga0105243_11244551	All Organisms → cellular organisms → Bacteria → Acidobacteria	759	Open in IMG/M
3300009148\|Ga0105243_11677249	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300009162\|Ga0075423_13118723	Not Available	508	Open in IMG/M
3300009176\|Ga0105242_11386051	All Organisms → cellular organisms → Bacteria → Acidobacteria	730	Open in IMG/M
3300009177\|Ga0105248_10770530	All Organisms → cellular organisms → Bacteria	1086	Open in IMG/M
3300009177\|Ga0105248_11005257	All Organisms → cellular organisms → Bacteria	942	Open in IMG/M
3300009545\|Ga0105237_10786047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → unclassified Caulobacterales → Caulobacterales bacterium 32-69-10	958	Open in IMG/M
3300009545\|Ga0105237_11346265	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300009551\|Ga0105238_11439904	All Organisms → cellular organisms → Bacteria → Acidobacteria	717	Open in IMG/M
3300009553\|Ga0105249_10531131	Not Available	1225	Open in IMG/M
3300009553\|Ga0105249_12874584	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	553	Open in IMG/M
3300010362\|Ga0126377_13170635	Not Available	531	Open in IMG/M
3300010362\|Ga0126377_13529210	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300010375\|Ga0105239_13566352	Not Available	506	Open in IMG/M
3300010379\|Ga0136449_104190240	All Organisms → cellular organisms → Bacteria → Acidobacteria	535	Open in IMG/M
3300010397\|Ga0134124_12314424	Not Available	578	Open in IMG/M
3300010403\|Ga0134123_13190265	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300011119\|Ga0105246_11294061	All Organisms → cellular organisms → Bacteria → Acidobacteria	675	Open in IMG/M
3300011119\|Ga0105246_11369905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	659	Open in IMG/M
3300012212\|Ga0150985_104883237	All Organisms → cellular organisms → Bacteria → Proteobacteria	2058	Open in IMG/M
3300012906\|Ga0157295_10399465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	512	Open in IMG/M
3300012917\|Ga0137395_11280282	All Organisms → cellular organisms → Bacteria → Acidobacteria	508	Open in IMG/M
3300012971\|Ga0126369_11428706	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	782	Open in IMG/M
3300013100\|Ga0157373_11414452	All Organisms → cellular organisms → Bacteria → Acidobacteria	529	Open in IMG/M
3300013105\|Ga0157369_10244190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1875	Open in IMG/M
3300013105\|Ga0157369_12518402	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300013297\|Ga0157378_11577557	All Organisms → cellular organisms → Bacteria → Acidobacteria	702	Open in IMG/M
3300013306\|Ga0163162_10122347	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	2707	Open in IMG/M
3300013306\|Ga0163162_11307010	All Organisms → cellular organisms → Bacteria → Acidobacteria	824	Open in IMG/M
3300013307\|Ga0157372_13116203	All Organisms → cellular organisms → Bacteria → Acidobacteria	529	Open in IMG/M
3300014324\|Ga0075352_1121596	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	707	Open in IMG/M
3300014325\|Ga0163163_12281948	Not Available	600	Open in IMG/M
3300014493\|Ga0182016_10378577	Not Available	843	Open in IMG/M
3300014495\|Ga0182015_11009627	Not Available	515	Open in IMG/M
3300014501\|Ga0182024_12896154	Not Available	508	Open in IMG/M
3300014745\|Ga0157377_10253217	All Organisms → cellular organisms → Bacteria → Proteobacteria	1142	Open in IMG/M
3300014968\|Ga0157379_11031541	All Organisms → cellular organisms → Bacteria → Acidobacteria	785	Open in IMG/M
3300014968\|Ga0157379_11553562	All Organisms → cellular organisms → Bacteria → Acidobacteria	645	Open in IMG/M
3300014968\|Ga0157379_11932860	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	582	Open in IMG/M
3300015371\|Ga0132258_13987377	Not Available	1002	Open in IMG/M
3300015374\|Ga0132255_100230013	All Organisms → cellular organisms → Bacteria	2640	Open in IMG/M
3300016445\|Ga0182038_11040439	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	726	Open in IMG/M
3300017946\|Ga0187879_10733137	Not Available	551	Open in IMG/M
3300017966\|Ga0187776_11150200	All Organisms → cellular organisms → Bacteria → Acidobacteria	579	Open in IMG/M
3300017973\|Ga0187780_10122512	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1797	Open in IMG/M
3300018037\|Ga0187883_10069847	Not Available	1846	Open in IMG/M
3300018044\|Ga0187890_10770880	Not Available	544	Open in IMG/M
3300019880\|Ga0193712_1025967	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Pelagibacterium	1251	Open in IMG/M
3300021180\|Ga0210396_10934517	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300021181\|Ga0210388_10721537	Not Available	867	Open in IMG/M
3300021474\|Ga0210390_10212937	All Organisms → cellular organisms → Bacteria	1635	Open in IMG/M
3300022756\|Ga0222622_10327393	All Organisms → cellular organisms → Bacteria → Proteobacteria	1062	Open in IMG/M
3300025906\|Ga0207699_11045940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	604	Open in IMG/M
3300025914\|Ga0207671_10995496	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300025921\|Ga0207652_11774750	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300025924\|Ga0207694_11343584	All Organisms → cellular organisms → Bacteria → Acidobacteria	604	Open in IMG/M
3300025925\|Ga0207650_11519561	Not Available	569	Open in IMG/M
3300025927\|Ga0207687_10661607	All Organisms → cellular organisms → Bacteria → Acidobacteria	884	Open in IMG/M
3300025928\|Ga0207700_11567907	Not Available	583	Open in IMG/M
3300025934\|Ga0207686_11497600	All Organisms → cellular organisms → Bacteria → Acidobacteria	556	Open in IMG/M
3300025940\|Ga0207691_10029120	All Organisms → cellular organisms → Bacteria	5166	Open in IMG/M
3300025940\|Ga0207691_10380839	All Organisms → cellular organisms → Bacteria	1204	Open in IMG/M
3300025942\|Ga0207689_11802679	Not Available	505	Open in IMG/M
3300025944\|Ga0207661_11851346	Not Available	549	Open in IMG/M
3300026035\|Ga0207703_12089970	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	542	Open in IMG/M
3300026088\|Ga0207641_10542733	All Organisms → cellular organisms → Bacteria → Acidobacteria	1133	Open in IMG/M
3300026095\|Ga0207676_10015911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Pelagibacterium	5441	Open in IMG/M
3300026116\|Ga0207674_10461522	All Organisms → cellular organisms → Bacteria	1227	Open in IMG/M
3300026118\|Ga0207675_100447222	All Organisms → cellular organisms → Bacteria	1280	Open in IMG/M
3300026142\|Ga0207698_11633366	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300027854\|Ga0209517_10010099	All Organisms → cellular organisms → Bacteria → Acidobacteria	10597	Open in IMG/M
3300027867\|Ga0209167_10732085	Not Available	540	Open in IMG/M
3300027869\|Ga0209579_10635411	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → unclassified Edaphobacter → Edaphobacter sp. 12200R-103	579	Open in IMG/M
3300027905\|Ga0209415_10574687	All Organisms → cellular organisms → Bacteria	843	Open in IMG/M
3300027905\|Ga0209415_10972916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium	568	Open in IMG/M
3300027986\|Ga0209168_10006046	All Organisms → cellular organisms → Bacteria	7715	Open in IMG/M
3300028803\|Ga0307281_10337795	All Organisms → cellular organisms → Bacteria → Acidobacteria	568	Open in IMG/M
3300028906\|Ga0308309_11785415	Not Available	520	Open in IMG/M
3300029636\|Ga0222749_10375189	Not Available	749	Open in IMG/M
3300030580\|Ga0311355_11705150	Not Available	537	Open in IMG/M
3300031231\|Ga0170824_118933267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → unclassified Caulobacterales → Caulobacterales bacterium 32-69-10	917	Open in IMG/M
3300031474\|Ga0170818_111390827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	707	Open in IMG/M
3300031708\|Ga0310686_101897932	Not Available	752	Open in IMG/M
3300031708\|Ga0310686_110420310	Not Available	1507	Open in IMG/M
3300031718\|Ga0307474_11082890	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	634	Open in IMG/M
3300031912\|Ga0306921_11690719	Not Available	685	Open in IMG/M
3300031938\|Ga0308175_100066449	All Organisms → cellular organisms → Bacteria	3191	Open in IMG/M
3300031946\|Ga0310910_11579609	Not Available	502	Open in IMG/M
3300032074\|Ga0308173_10222584	All Organisms → cellular organisms → Bacteria	1582	Open in IMG/M
3300032515\|Ga0348332_13473057	All Organisms → cellular organisms → Bacteria → Acidobacteria	2671	Open in IMG/M
3300032893\|Ga0335069_11818221	Not Available	647	Open in IMG/M
3300033433\|Ga0326726_10625366	All Organisms → cellular organisms → Bacteria → Proteobacteria	1036	Open in IMG/M
3300033433\|Ga0326726_11035145	Not Available	798	Open in IMG/M
3300033818\|Ga0334804_043976	All Organisms → cellular organisms → Bacteria → Proteobacteria	1335	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	54.14%
Host-Associated	Host-Associated	45.86%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	47.37%
Plants	Host-Associated → Plants	45.86%
Aquatic	Environmental → Aquatic	6.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	43.61%
Rhizosphere	Host-Associated → Plants → Rhizosphere	27.07%
Rhizoplane	Host-Associated → Plants → Rhizoplane	17.29%
Freshwater	Environmental → Aquatic → Freshwater	3.01%
Peat	Environmental → Terrestrial → Peat	3.01%
Sediment	Environmental → Aquatic → Sediment	2.26%
Marine	Environmental → Aquatic → Marine	1.50%
Roots	Host-Associated → Plants → Roots	1.50%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	27.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	21.80%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	13.53%
Loam	Environmental → Terrestrial → Soil → Loam	10.53%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.26%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.26%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.01%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.01%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.26%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.50%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.50%
Lotic	Environmental → Aquatic → Freshwater → Lotic	0.75%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.75%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	21.80%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.05%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	13.53%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.52%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.26%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.76%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.01%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.01%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.01%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.26%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.26%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.50%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.50%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	0.75%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.75%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.75%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.75%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	5.26%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.26%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	5.26%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	5.26%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.76%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.76%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.76%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.01%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.01%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.26%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.26%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.26%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.26%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.26%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.26%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.50%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.50%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.50%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.50%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.50%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.50%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.50%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.50%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.50%
Marine Plankton	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton	0.75%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.75%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.75%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.75%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.75%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.75%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.75%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.75%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.75%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.75%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.75%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.75%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.75%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.75%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.75%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.75%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.75%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.75%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.75%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300001139	Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soil	Environmental	Open in IMG/M
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300001848	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM47, ROCA_DNA265_0.2um_TAP-S_3a	Environmental	Open in IMG/M
3300003432	Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk	Environmental	Open in IMG/M
3300004015	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqC_D1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014324	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D1	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300019880	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a1	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033818	Peat soil microbial communities from Stordalen Mire, Sweden - 713 S-3-M	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_100582681	3300000567	Peatlands Soil	GSPAFTMVVRDIIAAVDQWTRAGGTVATTGGKPIVRANGAGNVFVRDVNGFLWELIQRAAQ*
JGI10220J13317_104541451	3300001139	Soil	IDAAVEQWTKAGGTVVSTGGKAIKRANGAGNVFVRDVNGFMWELIQRATQ*
JGI12269J14319_101093792	3300001356	Peatlands Soil	LIEYSGVPRVKIAAGAEDPGSPAFTMVVRDINAAVDQWTKAGGSVATTGGKAIVRANGAGNVFVRDVNGLMWELVQRAAQ*
RCM47_11502812	3300001848	Marine Plankton	VVRDLDAAVAQWKSAGGTVVTGGGTPVKRAGGAGNVFVRDINGLMWELFPRPTPAAKQ*
JGI20214J51088_110788071	3300003432	Wetland	DKVATTAKDPGSPAFTMVVRDIRSATAQWVKVGGTVATTGGQPIVRTNGAGNVFVRDIDGLMWELIQAAKQ*
Ga0055462_102793691	3300004015	Natural And Restored Wetlands	GAKDPGSPAFTMVVGDIVAAADQWVKSGGTVASTGGKPILQPSGAGNVFVKDVNGFTWELIQSARK*
Ga0063356_1052294822	3300004463	Arabidopsis Thaliana Rhizosphere	YAGVPHAKFAPGAQDPGSPAFTMVVRDIDAAVDQWTKAGGTVATTGGKAIKRANGAGNVFVRDVNGFMWELIQRAAPAR*
Ga0065715_111065152	3300005293	Miscanthus Rhizosphere	MVVRDINAAVDQWTKAGGTVATTGGKAIVRANGAGNVFVRDVNGLMWELIQR*
Ga0070670_1019029292	3300005331	Switchgrass Rhizosphere	RDIDAAVDQWKKAGGTVASTGGMAIKGPTGSGNVFVRDVNGFMWELIQRAGPPAAR*
Ga0066388_1069567021	3300005332	Tropical Forest Soil	LLGAEDPGSPAFTMVVRDIDAAVDQWTRAGGTVLTTGGKTIKRVNGSGNVFVRDVNGFMWELIQRAATQ*
Ga0068868_1006001612	3300005338	Miscanthus Rhizosphere	RTKIVAGAADPGSPAFTMVVRDIDAAVDQWTNAGGTVFTTGGKAIKQASGAGNVFVRDVNGFMWELIQRPATNAK*
Ga0070689_1009187691	3300005340	Switchgrass Rhizosphere	GSPAFTMVVRDIHAAVDQWTKAGGTVATAGGKAIVRANGAGNVFVRDVNGLMWELIQRAAP*
Ga0070675_1002152371	3300005354	Miscanthus Rhizosphere	EDPGSPAFTMFVRDIDAAVDQWKKAGGTVVSTGGVAIKGSTGAGNVFVRDVNGFMWELIQRAAVPAAR*
Ga0070703_103912481	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	GVPRAKFSAGAQDPGSPAFTMVVRDLDAAVDQWTKAGGTVVSTGGKAIKRANGAGNVFVRDVNGFMWELIQRAATRGQ*
Ga0070710_109409351	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	GAEDPGSPAFTMVVRDINAAVDQWTKAGGTVATTGGKAIVRANGAGNVFVRDLNGLMWELIQRPAQ*
Ga0070701_106040331	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	VRDIDAAVDQWTKAGGTVATTGGKAIKRANGAGNVFVRDVNGFMWELIQRAPPAR*
Ga0070678_1007225511	3300005456	Miscanthus Rhizosphere	VRDIDAAVDQWTKAGGTVFTTGGKAIKQASGAGNVFVRDVNGFMWELIQRPATNAK*
Ga0070679_1018155381	3300005530	Corn Rhizosphere	LIEYSGVARGTVAAGAEDPGSPAFTMVVRDINAAVNQWTKAGGTVATTGGKAIVRPNGAGNVFVRDVNGLMWELIQRPVQ*
Ga0070734_100033431	3300005533	Surface Soil	VVRDVNAAVDQWTKAGGTVASIGGKAIVRANGAGNVFVRDVNGLMWELIQRAAP*
Ga0070731_102640241	3300005538	Surface Soil	GSPAFTMVVREINAAVDQWTKAGGSVATTGGKAIVRANGAGNVFVRDVNGLMWELIQRAAQ*
Ga0070731_109363762	3300005538	Surface Soil	TMVVRDINAAVDQWTKAGGTVASTGGKPIVRANGAGNVFVRDVNGMMWELIQRAGQ*
Ga0070733_110634812	3300005541	Surface Soil	AEDPGSPAFTMVVRDVRAAVDQWTKAGGTVATAGGQPIVRANGAGNVFVRDVNGLMWELIQSAAQ*
Ga0070672_1000933091	3300005543	Miscanthus Rhizosphere	AKFSAGAQDPGSPAFTMVVRDLDAAVDQWTKAGGTVVSTGGKAIKRANGAGNVFVRDVNGFMWELIQRAATRGQ*
Ga0070672_1021149772	3300005543	Miscanthus Rhizosphere	EYRGLARVKFSPGAKDPGSPAFTMVVGDIASATDQWVKSGGVVSSTGGKPIVQPNGAGNVFVKDVDGFTWELIQHASPR*
Ga0068855_1014151592	3300005563	Corn Rhizosphere	GGAEDPGSPAFTMVVRDVNAAVDQWTKAGGTVATTGGKAIVRANGAGNVFVRDINGLMWELIQRAAQ*
Ga0068857_1022358522	3300005577	Corn Rhizosphere	GTVAAGAEDPGSPAFTMVVRDINAAVNQWTKAGGTVATTGGKAIVRPNGAGNVFVRDVNGLMWELIQRPVK*
Ga0070763_106246632	3300005610	Soil	EDPGSPAFTMVVRDIHAALDRWTKAGGTVASSGGKPVVRANGAGNVFVRDVNGLMWELIQSAAP*
Ga0068852_1020859182	3300005616	Corn Rhizosphere	GSPAFTMVVADIDAAVAQWKAAGGTVVSTGGVPAKQPTGQANVFVRDPNGFVWEMFTRAAPGAGKQAK*
Ga0068859_1008222261	3300005617	Switchgrass Rhizosphere	VAGAEDPGSPAFTMVVRDINAAVDQWTKAGGTVATTGGKAIVRANGAGNVFVRDVNGLMWELIQRAAQ*
Ga0068859_1017205091	3300005617	Switchgrass Rhizosphere	IDAAVDQWKKAGGTVFSTGGKAVKRPNGAGNVFVRDINGFMWELISRGSQ*
Ga0066903_1065190391	3300005764	Tropical Forest Soil	VVRDIDAAVDQWKKAGGSVASTGGKAIKRANGAGNVFVRDVNGFMWELIQRGAAPAR*
Ga0074470_111084682	3300005836	Sediment (Intertidal)	IEYASVPRVKYSAGAEDPGSPAFTMVVRNIDAAVDQWKKAGGTVHTTGGQAIKRANVAGNVFVRDVNGFMWELIQRAAQ*
Ga0068860_1007874072	3300005843	Switchgrass Rhizosphere	AEDPGSPAFTMVVRDINAAVDQWTKAGGTVATTGGKAIVRANGAGNVFVRDVNGLMWELIQRPAQ*
Ga0075030_1015354171	3300006162	Watersheds	VVRDIHAAVEQWTKAGGTVATTGGKPIVRANGGGNVFVRDVNGLMWELIQSAAK*
Ga0070765_1014642962	3300006176	Soil	SPAFTMVVRDIHAAVGQWTKAGGTVASTGGKPIVRSNGAGNVFVRDVNGLMWELIQSAAQ
Ga0097621_1014412741	3300006237	Miscanthus Rhizosphere	PGSPAFTMVVRDIDAAVDQWKKAGGTVATTGGMAIKQANGAGNVFVRDVNGFMWELIGRAAPGQ*
Ga0075434_1015146053	3300006871	Populus Rhizosphere	VKFSLGAEDPGSPAFTMVVRDIDAAVDQWKKAGGTVATTGGMAIKQANGAGNVFVRDVNGFMWELIGRAAPGQ*
Ga0068865_1017477752	3300006881	Miscanthus Rhizosphere	FGLIEYSGVPRAKIVAGAEDPGPPAFTMVVRDINAAVDQWTKAGGTVATTGGKAIVRANGTGNVFVRDVNGLMWELIQRAAK*
Ga0105240_105591071	3300009093	Corn Rhizosphere	VVRDANAAVDQWTKAGGTVATTGGKAIVRANGAGNVFVRDINGLMWELIQRAAQ*
Ga0105243_112445512	3300009148	Miscanthus Rhizosphere	VVAGAEDPGSPAFTMVVRDINAAVDQWTKAGGTVATTGGKAIVRANGAGNVFVRDVNGLMWELIQRAAQ*
Ga0105243_116772491	3300009148	Miscanthus Rhizosphere	AGAQDPGSPAFTMVVRDLDAAVDQWTKAGGTVVSTGGKAIKRANGAGNVFVRDVNGFMWELIQRAATRGQ*
Ga0075423_131187231	3300009162	Populus Rhizosphere	RQKLIAGAADPGSPAFTMVVRDIDAAVDQWTKAGGTVVSTGGKAIKGATGAGNVFVRDVNGFMWELIQRAAQ*
Ga0105242_113860512	3300009176	Miscanthus Rhizosphere	AEDPGSPAFTMVVRDINAAVDQWTKAGGTVATTGGKAIVRANRAGNVFVRDVNGLMWELIQRAAQ*
Ga0105248_107705301	3300009177	Switchgrass Rhizosphere	IEYSGVARTKVVAGAEDPGSPAFTMVVRDIKAAVEQWTKAGGTVVTTGGKPIVRAGGAGNVFVRDVNGFMWELIQRATP*
Ga0105248_110052572	3300009177	Switchgrass Rhizosphere	VAGAEDPGSPAFTMVVRKINDAVDQWTKAGGTVATAGGKAIVRANGAGNVFVRDVNGLMWELIQRAAQ*
Ga0105237_107860472	3300009545	Corn Rhizosphere	SGVARVEVVAAAEDPGSPAFTIVVRDVNAAVDQWTKAGGTVATTGGKAIVRANGAGNVFVRDVNGMMWELIQRAAP*
Ga0105237_113462651	3300009545	Corn Rhizosphere	AGAEDPGSPAFTMVVRDINAAVNQWTKAGGTVATTGGKAIVRPNGAGNVFVRDVNGLMWELIQRPVQ*
Ga0105238_114399042	3300009551	Corn Rhizosphere	RDINAAVDQWTKAGGTVATTGGKAIVRANRAGNVFVRDVNGLMWELIQR*
Ga0105249_105311311	3300009553	Switchgrass Rhizosphere	MVVRDINAAVDQWTKAGGTVATTGAKAIVRANGAGNVFVRDVNGLMWELIQRAAK*
Ga0105249_128745841	3300009553	Switchgrass Rhizosphere	KIAAGAEDPGSPAFTMVVRDINAAVDQWTKAGGTVATTGGKAIVRANGAGNVFVRDVNGLTWELIQRAAQ*
Ga0126377_131706351	3300010362	Tropical Forest Soil	PGAQDPGSPAFTMVVRDIDAAVDQWKKAGGTVATTGGKAIKRPNGAGNVFVRDVNGFMWELIQRATQ*
Ga0126377_135292101	3300010362	Tropical Forest Soil	RSKFSLGAEDPGSPAFTMVVRDIDSAVEQWTKAGGTVVSTGGKAIKRANGAGNVFVRDINGFMWELIQRASQ*
Ga0105239_135663521	3300010375	Corn Rhizosphere	AGAEDPGSPAFTMVVRDINAAVVQWTKAGGTVDTAGGKAIVRANGAGNVFVRDANGMMWELIQRAAQ*
Ga0136449_1041902402	3300010379	Peatlands Soil	LIEYSGVPRTKIVAGAEDPGSPAFTMIVRDVNAAVDLWTKAGGTVATAGGKAIVRANGAGNVFVRDVNGLMWELIQRAAQ*
Ga0134124_123144241	3300010397	Terrestrial Soil	AGVARAKIAAGAEDPGSPAFTMVVRDINAAADQWTKAGGTVATTGGKAIVRANGAGNIFVRDLNGFLWELIQRARP*
Ga0134123_131902651	3300010403	Terrestrial Soil	GLIEYSGVPRARFSMGAEDPGSPAFTMVVRDIDAAVDQWTSAGGTVVTTGGKAIKRANGAGNVFVRDVNGFMWELIQRAGQ*
Ga0105246_112940612	3300011119	Miscanthus Rhizosphere	PGSPAFTMVVRDINAAVDQWTKAGGTVATTGGKAIVRANGAGNVFVRDVNGLMWELIQR*
Ga0105246_113699051	3300011119	Miscanthus Rhizosphere	GSPAFTMVVRDIDAAVDQWTKAGGTVATTGGKAIKRANGAGNVFVRDVNGFMWELIQRAPPAR*
Ga0150985_1048832374	3300012212	Avena Fatua Rhizosphere	VRDIDAAVDQWKKAGGSVLSTGGKAIKGANGAGNVFVRDVNGFTWELIQRAGR*
Ga0157295_103994651	3300012906	Soil	RDIDAAVDQWTKAGGTVFTTGGKAIKRPNGAGNVFVRDVNGFMWELIQRAPPAR*
Ga0137395_112802821	3300012917	Vadose Zone Soil	AEDPGSPAFTMVVRDIDAAVDQWKKAGGSVVTTGGQAVKRANGAGNVFVRDVNGFMWEFIQRAGQ*
Ga0126369_114287061	3300012971	Tropical Forest Soil	ARGKFSLGAADPGSPAFTMVVRDIDAAVEQWTKAGGTVFSAGGKPKRANGAGNVFVRDVNGFMWELIQRAPQ*
Ga0157373_114144521	3300013100	Corn Rhizosphere	INAAVDQWTKAGGTVATTGGKAIVRAHRAGNVFVRDVNGLMWELIQR*
Ga0157369_102441903	3300013105	Corn Rhizosphere	DINAAVDQWTKAGGTVATTGGKAIVRANGAGNVFVRDVNGLMWELIQRAAP*
Ga0157369_125184022	3300013105	Corn Rhizosphere	AEDPGSPAFTMVVRDINAAVNQWTKAGGTVATTGGKAIVRPNGAGNVFVRDVNGLMWELIQRPVQ*
Ga0157378_115775571	3300013297	Miscanthus Rhizosphere	VTRAKVVAGAEDPGSPAFTMVVRDINAAVDQWTKAGGTVATTGGKAIVRANGAGNVFVRDVNGLMWELIQRAAQ*
Ga0163162_101223473	3300013306	Switchgrass Rhizosphere	SPAFTMVVRDINAAVDQWTKAGGTVATTGGKAIVRANRAGNVFVRDVNGLMWELIQRAAQ
Ga0163162_113070101	3300013306	Switchgrass Rhizosphere	VAGAEDPGSPAFTMVVRNINAAVDQWTKAGGTVATTGGKAIVRANGAGNVFVRDVNGLMWELIQRAAQ*
Ga0157372_131162032	3300013307	Corn Rhizosphere	MVVRDINAAVDQWTKAGGTVATTGGKAIVRANGAGNVFVRDVNGMMWELIQRAAQ*
Ga0075352_11215962	3300014324	Natural And Restored Wetlands	GAKDPGSPAFTMVVGDIASATDQWVKSGGVVASTGGKPIVQPSGAGNVFVKDVDGFTWELIQRASQ*
Ga0163163_122819482	3300014325	Switchgrass Rhizosphere	EYSGVARAKVVAGAEDPGSPAFTMVVRDINAAVDQWTKAGGSVVTTGGKPIVRAGGAGNVFVRDVNGFMWELIQRATP*
Ga0182016_103785771	3300014493	Bog	MVVRDIDAAVDQWKKAGGTVFSTGGKAIKRANGTGNVFVRDINGLMYELISRGAQ*
Ga0182015_110096272	3300014495	Palsa	AGAEDPGSPAFTMVVRDIHAAVDQWTKAGGTVASTGGQPIVRANGAGNVFVRDVNGLMWELIQSAAQ*
Ga0182024_128961541	3300014501	Permafrost	AFTVVVRDIYAAVNQWTRAGGTVATTGGKAIVRANGAGNVFVRDVNGLLWELTQHPAQ*
Ga0157377_102532173	3300014745	Miscanthus Rhizosphere	VRDIDAAVDQWKKAGGTVVSTGGVAIKGSTGAGNVFVRDVNGFMWELIQRAAVPAAR*
Ga0157379_110315412	3300014968	Switchgrass Rhizosphere	FTMFVRDIDAAVDQWKKAGGTVVSTGGVAIKGSTGAGNVFVRDVNGFMWELIQRAAVPAAR*
Ga0157379_115535622	3300014968	Switchgrass Rhizosphere	AGAEDPGSPAFTMVVRDIDAAVDQWKKAGGAVVSTGGMAIKGPTGAGNVFVRDVNGFMWELIQRAGAR*
Ga0157379_119328601	3300014968	Switchgrass Rhizosphere	DINAAVDQWTKAGGTVATTGGKAIVRANGAGNVFVRDVNGLMWELIQRAAK*
Ga0132258_139873772	3300015371	Arabidopsis Rhizosphere	PGSPAFTMVVKDIDAAVDQWKRAGGTVATTGGKAIKRSNGAGNVFVRDVNGFMWELIQRAAQ*
Ga0132255_1002300134	3300015374	Arabidopsis Rhizosphere	AQDPGSPAFTMVLRDIDAAVDQWKKAGGSVASTGGKAIKRTNGAGNVFVRDVNGFMWELIQRAAAAAR*
Ga0182038_110404392	3300016445	Soil	PAFTMVVRDIDAAVEQWTKAGGTVFSAGGKPIKHANGAGNVFVRDVNGFMWELIQRAPQ
Ga0187879_107331372	3300017946	Peatland	DIHAAVEQWTKAGGTVASSGGKPIVRANGAGNVFVRDINGLMWELIQRANQ
Ga0187776_111502002	3300017966	Tropical Peatland	EDPGSPAFTIVVRDIHAAVDQWTKAGGTVATTGGKAIVRANGAGNVFVRDVNGLMWELIQRATQ
Ga0187780_101225121	3300017973	Tropical Peatland	KVMAGAEDPGSPAFTMVVRDVNAAVDQWAKAGGTVATTGGKAIVRANGAGNVFVRDVNGLMWELIQRAAQ
Ga0187883_100698472	3300018037	Peatland	PSFTMVVHDVNAAVDQWKKAGGTVATTGGQAIMRANGAGNVFVRDVNGFMWELIQRARQ
Ga0187890_107708801	3300018044	Peatland	PGSPAFTMVVHDVNAAVDQWKKAGGTVATTGGQAIMRANGAGNVFVRDVNGLMWELIQRAAQ
Ga0193712_10259673	3300019880	Soil	PGSPAFTMVVRDIDAAVDQWMKAGGSVVSTGGKAIKRANGAGNVFVRDVNGFMWELIQRG
Ga0210396_109345171	3300021180	Soil	DPGSPAFTMVVREINAAVDQWTKAGGSVATTGGKAIVRANGAGNVFVSDVNGLMWELIQRTAQ
Ga0210388_107215371	3300021181	Soil	GAEDPGSPAFTMVVRDLHAALDQWTKAGGTVASTGGKPVMRANGAGNVFVRDVNGLMWELIQSAAQ
Ga0210390_102129373	3300021474	Soil	SGVARAKVVAGAEDPGSPAFTMVVRDIHAAVDQWTKAGGTVATTGGQPIVRANGAGNVFVRDVNGLMWELIQSAAQ
Ga0222622_103273931	3300022756	Groundwater Sediment	AFTMVVRDIDAAVDQWKKAGGTVVSTGGMAIKGATGAGNVFVRDINGFMWELIQRPPVPAAR
Ga0207699_110459401	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MVVRDINAAVDQWTKAGGTVATTGGKAIVRANGAGNVFVRDVNGMM
Ga0207671_109954962	3300025914	Corn Rhizosphere	AGAEDPGSPAFTMVVRDINAAVNQWTKAGGTVATTGGKAIVRPNGAGNVFVRDVNGLMWELIQRPVQ
Ga0207652_117747501	3300025921	Corn Rhizosphere	LIEYSGVARGTVAAGAEDPGSPAFTMVVRDINAAVNQWTKAGGTVATTGGKAIVRPNGAGNVFVRDVNGLMWELIQRPVQ
Ga0207694_113435842	3300025924	Corn Rhizosphere	VRDINAAVDQWTKAGGTVATTGGKAIVRANRAGNVFVRDVNGLMWELIQR
Ga0207650_115195612	3300025925	Switchgrass Rhizosphere	MVVRDIDAAVDQWKKAGGTVASTGGMAIKGPTGSGNVFVRDVNGFMWELIQRAGPPAAR
Ga0207687_106616071	3300025927	Miscanthus Rhizosphere	KVVAGAEDPGSPAFTMVVRDINAAVDQWTKAGGTVATTGGKAIVRANGAGNVFVRDVNGLMWELIQRAAQ
Ga0207700_115679072	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MVVRDINAVVVQWTKAGGTVATAGGKAIVRANGAGNVFVRDANGMMWELIQRAAQ
Ga0207686_114976002	3300025934	Miscanthus Rhizosphere	VVRDINAAVDQWTKAGGTVATTGGKAIVRANRAGNVFVRDVNGLMWELIQRAAQ
Ga0207691_100291201	3300025940	Miscanthus Rhizosphere	GVPRAKFSAGAQDPGSPAFTMVVRDLDAAVDQWTKAGGTVVSTGGKAIKRANGAGNVFVRDVNGFMWELIQRAATRGQ
Ga0207691_103808391	3300025940	Miscanthus Rhizosphere	YAGVPRAKFAPGAQDPGSPAFTMVVRDIDAAVDQWTKAGGTVATTGGKAIKRANGAGNVFVRDVNGFMWELIQRAPPAR
Ga0207689_118026791	3300025942	Miscanthus Rhizosphere	GSPAFTMVVRDLDAAVDQWTKAGGTVVSTGGKAIKRANGAGNVFVRDVNGFMWELIQRAATRGQ
Ga0207661_118513461	3300025944	Corn Rhizosphere	PAFTMVVRYINAAVVQWTKAGGTVDTAGGKAIVRANGAGNVFVRDANGMMWELIQRAAQ
Ga0207703_120899701	3300026035	Switchgrass Rhizosphere	GAEDPGSPAFTLVVRDINAAVDQWTKAGGTVATTGGKPIVRANGAGNVFVRDVNGLMWELIQRAAQ
Ga0207641_105427333	3300026088	Switchgrass Rhizosphere	AKVVAGAEDPGSPAFTMVVRDINAAVDQWTKAGGTVATTGGKAIVRANGAGNVFVRDVNGLMWELIQR
Ga0207676_100159117	3300026095	Switchgrass Rhizosphere	YAGVPREKLSLGAEDPGSPAFTMFVRDIDAAVDQWKKAGGTVVSTGGVAIKGSTGAGNVFVRDVNGFMWELIQRAAVPAAR
Ga0207674_104615221	3300026116	Corn Rhizosphere	MVVRDINAAVNQWTKAGGTVATTGGKAIVRPNGAGNVFVRDVNGLMWELIQRPVQ
Ga0207675_1004472222	3300026118	Switchgrass Rhizosphere	MVVRDINAAVDQWTKAGGTVATAGGKAIVRANGAGNVFVRDVNGLMWELIQRAAQ
Ga0207698_116333662	3300026142	Corn Rhizosphere	GSPAFTMVVADIDAAVAQWKAAGGTVVSTGGVPAKQPTGQANVFVRDPNGFVWEMFTRAAPGAGKQAK
Ga0209517_100100991	3300027854	Peatlands Soil	DPGSPAFTMVVRDIIAAVDQWTRAGGTVATTGGKPIVRANGAGNVFVRDVNGFLWELIQRAAQ
Ga0209167_107320851	3300027867	Surface Soil	EDPGSPAFTMVVRDVRAAVDQWTKAGGTVATAGGQPIVRANGAGNVFVRDVNGLMWELIQSAAQ
Ga0209579_106354112	3300027869	Surface Soil	SGVPRVKIAAGAEDPGSPAFTMVVREINAAVDQWTKAGGSVATTGGKAIVRANGAGNVFVRDVNGLMWELIQRAAQ
Ga0209415_105746871	3300027905	Peatlands Soil	RKTRIMGPADPGSPAFTMVVRDLDAAVARWKAAGGTVVSTGGAPVKRAGGAGNVFVRDVNGFVWELYTRAAPAR
Ga0209415_109729162	3300027905	Peatlands Soil	VVRDIHAALDQWTNAGGTVASTGGKPIVRANGAGNVFVRDLNGLMWELIQSAAQ
Ga0209168_100060461	3300027986	Surface Soil	ARVKVAAGAEDPGSPAFTMVVRDVNAAVDQWTKAGGTVATTGGKAIVRANGAGNVFVRDVNGMMWELIQRAGQ
Ga0307281_103377952	3300028803	Soil	EYVGVPRTKLIAGAEDPGSPAFTMVVRDIDAAVDQWKKAGGTVVSTGGMAIKGATGAGNVFVRDVNGFMWELIQRAAAR
Ga0308309_117854152	3300028906	Soil	KVVAGAEDPGSPAFTMVVRDIHAAVGQWTKAGGTVASTGGKPIVRSNGAGNVFVRDVNGLMWELIQSAAQ
Ga0222749_103751892	3300029636	Soil	RDINAAVNQWTKAGGTVATTGGKAIVRANGAGNVFVRDVNGLMWELIQRAAQ
Ga0311355_117051501	3300030580	Palsa	RHKRVMSAADPGSPAFTMMVWDLDAAVERWKAAGGTVISTGGAPVKLPGEAGNILVRDINGFVWELFTIAKLRRL
Ga0170824_1189332672	3300031231	Forest Soil	FGLIEYSGVARAKVLAGAEDPGSPAFTMVVRDVNAAVDQWTKAGGTVATTGGKAIVRANGAGNVFVRDVNGLMWELIQRAAQ
Ga0170818_1113908271	3300031474	Forest Soil	MVVRDVNAAVDQWTKAGGTVATTGGKAIVRATGAGNVFVRDVNGLMWELIQRAAQ
Ga0310686_1018979322	3300031708	Soil	PGSPAFTMVVRDINAAVSQWTKAGGAVATTGGKAIVRANGAGNVFVRDVDGMMWELIQRAAQ
Ga0310686_1104203102	3300031708	Soil	FIEYSGVPRSKITAGAQDPGSPAFTMVVRDINAAVDQWTKAGGSVASTGGKAIVRANGAGNVFVRDVNGLMWELIQSAAP
Ga0307474_110828902	3300031718	Hardwood Forest Soil	SGVPRAKVVAGAEDPGSPAFTLVVRDVNAALDQWTKAGGTVATTGGKAIVRANGAGNVFVRDVNGFMWELIQRAAQ
Ga0306921_116907192	3300031912	Soil	VAGAEDPGSPAFTMVVRDINAAVEQWTKAGGTVASAGGKPVVHANGASNVFVRDVNGLMWELIQRPA
Ga0308175_1000664495	3300031938	Soil	RSKVAGGAEDPGSPAFTMVVRDVNAAVDEWKKAGGIVVTTGGKAIVRANGAGNVFVRDVNGLMWELIQRAAQ
Ga0310910_115796091	3300031946	Soil	MVVRDIDAAVEQWTKSGGTVFTAGGKPIKHANGAGNVFVRDVNGFMWELIQRAPQ
Ga0308173_102225843	3300032074	Soil	AEDPGSPAFTMVVRDVNAAVDQWKKAGGIVVTTGGKAIVRANGAGNVFVRDVNGLMWELIQRAAQ
Ga0348332_134730573	3300032515	Plant Litter	VVRDIHAALDRWTKAGGTVASSGGKPVVRANGAGNVFVRDVNGLMWELIQSAAP
Ga0335069_118182212	3300032893	Soil	VVKDLPAAVDQWTKAGGTVASTGGKPVIRANGAGNVFVRDVNGLMWELIQQPKP
Ga0326726_106253662	3300033433	Peat Soil	AAPGAADPGSPALTMVVRDIDAAVDQWTKAGGTVFSRGGKAIKRANGTGNVFVRDINGLMYKLNSRGAQ
Ga0326726_110351451	3300033433	Peat Soil	GVPRAKLVAGAEDPGSPAFTMVVRDINAAVDQWTKAGGTVATSGGKAIVRANGAGNVFVRDVNGLMWELIQRAAQ
Ga0334804_043976_53_220	3300033818	Soil	MVVRDIDAAVDQWTKAGGTVFSTGGKAIKRANGTGNVFVRDINGLMYEFISRGAQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F060145

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences