Metagenome Family F060190

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F060190
Family Type	Metagenome
Number of Sequences	133
Average Sequence Length	50 residues
Representative Sequence	MKHPPTLAPLAAPRGAGQSVGAALPDWDEHPPTLAPLAAPRGAGQSVGAALPD
Number of Associated Samples	90
Number of Associated Scaffolds	133

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	58.65 %
% of genes near scaffold ends (potentially truncated)	73.68 %
% of genes from short scaffolds (< 2000 bps)	77.44 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.15

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (86.466 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere (17.293 % of family members)
Environment Ontology (ENVO)	Unclassified (52.632 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (90.977 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.15
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.15
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 133 Family Scaffolds
PF13247	Fer4_11	9.77
PF02674	Colicin_V	6.02
PF01593	Amino_oxidase	5.26
PF03916	NrfD	5.26
PF00072	Response_reg	3.01
PF01578	Cytochrom_C_asm	3.01
PF12804	NTP_transf_3	3.01
PF03328	HpcH_HpaI	3.01
PF14572	Pribosyl_synth	2.26
PF01435	Peptidase_M48	2.26
PF00005	ABC_tran	2.26
PF03918	CcmH	2.26
PF16327	CcmF_C	1.50
PF00211	Guanylate_cyc	1.50
PF00378	ECH_1	1.50
PF00528	BPD_transp_1	1.50
PF08534	Redoxin	1.50
PF02518	HATPase_c	1.50
PF13531	SBP_bac_11	1.50
PF00490	ALAD	1.50
PF08811	DUF1800	0.75
PF07729	FCD	0.75
PF03950	tRNA-synt_1c_C	0.75
PF13662	Toprim_4	0.75
PF01063	Aminotran_4	0.75
PF13561	adh_short_C2	0.75
PF09678	Caa3_CtaG	0.75
PF04552	Sigma54_DBD	0.75
PF08281	Sigma70_r4_2	0.75
PF01569	PAP2	0.75
PF12399	BCA_ABC_TP_C	0.75
PF02423	OCD_Mu_crystall	0.75
PF05598	DUF772	0.75
PF01041	DegT_DnrJ_EryC1	0.75
PF00310	GATase_2	0.75
PF01627	Hpt	0.75
PF04166	PdxA	0.75
PF00535	Glycos_transf_2	0.75
PF02698	DUF218	0.75
PF01406	tRNA-synt_1e	0.75
PF00359	PTS_EIIA_2	0.75
PF14559	TPR_19	0.75
PF02826	2-Hacid_dh_C	0.75
PF00113	Enolase_C	0.75
PF02634	FdhD-NarQ	0.75
PF02515	CoA_transf_3	0.75
PF13522	GATase_6	0.75
PF01594	AI-2E_transport	0.75
PF01970	TctA	0.75
PF00893	Multi_Drug_Res	0.75
PF13751	DDE_Tnp_1_6	0.75
PF07475	Hpr_kinase_C	0.75
PF10387	DUF2442	0.75
PF02403	Seryl_tRNA_N	0.75
PF13147	Obsolete Pfam Family	0.75
PF12911	OppC_N	0.75
PF00905	Transpeptidase	0.75
PF12838	Fer4_7	0.75
PF14537	Cytochrom_c3_2	0.75
PF00291	PALP	0.75
PF07690	MFS_1	0.75
PF02603	Hpr_kinase_N	0.75
PF02482	Ribosomal_S30AE	0.75
PF14378	PAP2_3	0.75
PF00347	Ribosomal_L6	0.75
PF03401	TctC	0.75

COG ID	Name	Functional Category	% Frequency in 133 Family Scaffolds
COG1286	Colicin V production accessory protein CvpA, regulator of purF expression and biofilm formation	Cell wall/membrane/envelope biogenesis [M]	6.02
COG0469	Pyruvate kinase	Carbohydrate transport and metabolism [G]	3.01
COG2301	Citrate lyase beta subunit	Carbohydrate transport and metabolism [G]	3.01
COG3836	2-keto-3-deoxy-L-rhamnonate aldolase RhmA	Carbohydrate transport and metabolism [G]	3.01
COG3088	Cytochrome c-type biogenesis protein CcmH/NrfF	Posttranslational modification, protein turnover, chaperones [O]	2.26
COG0113	Delta-aminolevulinic acid dehydratase, porphobilinogen synthase	Coenzyme transport and metabolism [H]	1.50
COG0115	Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase	Amino acid transport and metabolism [E]	1.50
COG1493	Serine kinase of the HPr protein, regulates carbohydrate metabolism	Signal transduction mechanisms [T]	1.50
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	1.50
COG0008	Glutamyl- or glutaminyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.75
COG0018	Arginyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.75
COG0097	Ribosomal protein L6P/L9E	Translation, ribosomal structure and biogenesis [J]	0.75
COG0143	Methionyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.75
COG0148	Enolase	Carbohydrate transport and metabolism [G]	0.75
COG0172	Seryl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.75
COG0215	Cysteinyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.75
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.75
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.75
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.75
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.75
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.75
COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	Amino acid transport and metabolism [E]	0.75
COG1434	Lipid carrier protein ElyC involved in cell wall biogenesis, DUF218 family	Cell wall/membrane/envelope biogenesis [M]	0.75
COG1508	DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog	Transcription [K]	0.75
COG1526	Formate dehydrogenase assembly factor FdhD, a sulfurtransferase	Energy production and conversion [C]	0.75
COG1544	Ribosome-associated translation inhibitor RaiA	Translation, ribosomal structure and biogenesis [J]	0.75
COG1784	TctA family transporter	General function prediction only [R]	0.75
COG1802	DNA-binding transcriptional regulator, GntR family	Transcription [K]	0.75
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	0.75
COG1995	4-hydroxy-L-threonine phosphate dehydrogenase PdxA	Coenzyme transport and metabolism [H]	0.75
COG2076	Multidrug transporter EmrE and related cation transporters	Defense mechanisms [V]	0.75
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	0.75
COG2423	Ornithine cyclodeaminase/archaeal alanine dehydrogenase, mu-crystallin family	Amino acid transport and metabolism [E]	0.75
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.75
COG2949	Uncharacterized periplasmic protein SanA, affects membrane permeability for vancomycin	Cell wall/membrane/envelope biogenesis [M]	0.75
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.75
COG3333	TctA family transporter	General function prediction only [R]	0.75
COG5267	Uncharacterized conserved protein, DUF1800 family	Function unknown [S]	0.75

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	87.22 %
Unclassified	root	N/A	12.78 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.22 %
Unclassified	root	N/A	12.78 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	86.47 %
Unclassified	root	N/A	12.78 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.75 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	62.41 %
Unclassified	root	N/A	12.78 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.75 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.75 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	34.59 %
Unclassified	root	N/A	12.78 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4.51 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.75 %
bacterium MnTg03	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg03	0.75 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.78 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	10.53 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	7.52 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.26 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.75 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.75 %
bacterium MnTg03	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg03	0.75 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.78 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	7.52 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	3.76 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	1.50 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.75 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.75 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.75 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.75 %
bacterium MnTg03	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg03	0.75 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.78 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	7.52 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	3.01 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.75 %
Noviherbaspirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Noviherbaspirillum	0.75 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.75 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.75 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.75 %
bacterium MnTg03	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg03	0.75 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.78 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	7.52 %
unclassified Variovorax	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax	2.26 %
Noviherbaspirillum massiliense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Noviherbaspirillum → Noviherbaspirillum massiliense	0.75 %
Methylobacterium mesophilicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium mesophilicum	0.75 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.75 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.75 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.75 %
bacterium MnTg03	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg03	0.75 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.78 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	7.52 %
Variovorax sp. URHB0020	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. URHB0020	1.50 %
Variovorax sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp.	0.75 %
Noviherbaspirillum massiliense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Noviherbaspirillum → Noviherbaspirillum massiliense	0.75 %
Methylobacterium mesophilicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium mesophilicum	0.75 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.75 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.75 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.75 %
bacterium MnTg03	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg03	0.75 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.75 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005290\|Ga0065712_10643271	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300005293\|Ga0065715_10260624	All Organisms → cellular organisms → Bacteria	1139	Open in IMG/M
3300005327\|Ga0070658_10076468	All Organisms → cellular organisms → Bacteria → Proteobacteria	2745	Open in IMG/M
3300005327\|Ga0070658_10179067	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1783	Open in IMG/M
3300005327\|Ga0070658_10271390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium mesophilicum	1443	Open in IMG/M
3300005327\|Ga0070658_11006553	All Organisms → cellular organisms → Bacteria → Proteobacteria	725	Open in IMG/M
3300005328\|Ga0070676_10001786	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	10960	Open in IMG/M
3300005328\|Ga0070676_10614136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	785	Open in IMG/M
3300005329\|Ga0070683_100004586	All Organisms → cellular organisms → Bacteria → Proteobacteria	11405	Open in IMG/M
3300005329\|Ga0070683_100193512	Not Available	1931	Open in IMG/M
3300005329\|Ga0070683_100862229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	868	Open in IMG/M
3300005331\|Ga0070670_100003749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	12653	Open in IMG/M
3300005334\|Ga0068869_100110631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2089	Open in IMG/M
3300005336\|Ga0070680_100233896	All Organisms → cellular organisms → Bacteria	1552	Open in IMG/M
3300005336\|Ga0070680_100286366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. URHB0020	1396	Open in IMG/M
3300005336\|Ga0070680_100391733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1184	Open in IMG/M
3300005336\|Ga0070680_100505203	Not Available	1034	Open in IMG/M
3300005336\|Ga0070680_100745009	All Organisms → cellular organisms → Bacteria	843	Open in IMG/M
3300005336\|Ga0070680_100980595	All Organisms → cellular organisms → Bacteria → Proteobacteria	730	Open in IMG/M
3300005337\|Ga0070682_100044488	All Organisms → cellular organisms → Bacteria	2749	Open in IMG/M
3300005337\|Ga0070682_101354996	All Organisms → cellular organisms → Bacteria → Proteobacteria	607	Open in IMG/M
3300005338\|Ga0068868_100573592	All Organisms → cellular organisms → Bacteria → Proteobacteria	997	Open in IMG/M
3300005339\|Ga0070660_100020919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4816	Open in IMG/M
3300005339\|Ga0070660_100052646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3138	Open in IMG/M
3300005339\|Ga0070660_100208574	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1586	Open in IMG/M
3300005339\|Ga0070660_100374211	All Organisms → cellular organisms → Bacteria	1175	Open in IMG/M
3300005339\|Ga0070660_100397193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	1140	Open in IMG/M
3300005340\|Ga0070689_100368870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1208	Open in IMG/M
3300005344\|Ga0070661_100137041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Noviherbaspirillum → Noviherbaspirillum massiliense	1842	Open in IMG/M
3300005344\|Ga0070661_100525290	All Organisms → cellular organisms → Bacteria → Proteobacteria	950	Open in IMG/M
3300005344\|Ga0070661_100839438	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	755	Open in IMG/M
3300005344\|Ga0070661_101351512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	598	Open in IMG/M
3300005345\|Ga0070692_10073795	All Organisms → cellular organisms → Bacteria	1823	Open in IMG/M
3300005347\|Ga0070668_100193532	All Organisms → cellular organisms → Bacteria	1667	Open in IMG/M
3300005364\|Ga0070673_100384603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1252	Open in IMG/M
3300005365\|Ga0070688_100199633	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg03	1399	Open in IMG/M
3300005366\|Ga0070659_100143814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. URHB0020	1942	Open in IMG/M
3300005435\|Ga0070714_100225801	All Organisms → cellular organisms → Bacteria → Proteobacteria	1723	Open in IMG/M
3300005435\|Ga0070714_100834406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	893	Open in IMG/M
3300005435\|Ga0070714_102382537	Not Available	514	Open in IMG/M
3300005436\|Ga0070713_101516240	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300005436\|Ga0070713_101584526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	636	Open in IMG/M
3300005437\|Ga0070710_10302318	All Organisms → cellular organisms → Bacteria	1044	Open in IMG/M
3300005437\|Ga0070710_10791762	Not Available	676	Open in IMG/M
3300005439\|Ga0070711_100058017	All Organisms → cellular organisms → Bacteria	2683	Open in IMG/M
3300005439\|Ga0070711_100622146	All Organisms → cellular organisms → Eukaryota	903	Open in IMG/M
3300005444\|Ga0070694_100466291	All Organisms → cellular organisms → Bacteria	1000	Open in IMG/M
3300005455\|Ga0070663_100097315	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2190	Open in IMG/M
3300005455\|Ga0070663_100282691	All Organisms → cellular organisms → Bacteria → Proteobacteria	1323	Open in IMG/M
3300005456\|Ga0070678_102245928	Not Available	518	Open in IMG/M
3300005458\|Ga0070681_10395741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1292	Open in IMG/M
3300005459\|Ga0068867_100244417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1457	Open in IMG/M
3300005518\|Ga0070699_101312904	All Organisms → cellular organisms → Bacteria → Proteobacteria	664	Open in IMG/M
3300005518\|Ga0070699_101663802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	585	Open in IMG/M
3300005530\|Ga0070679_100141741	Not Available	2382	Open in IMG/M
3300005530\|Ga0070679_100377859	All Organisms → cellular organisms → Bacteria → Proteobacteria	1364	Open in IMG/M
3300005530\|Ga0070679_101107681	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	736	Open in IMG/M
3300005530\|Ga0070679_101947636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	536	Open in IMG/M
3300005535\|Ga0070684_101317788	All Organisms → cellular organisms → Bacteria → Proteobacteria	680	Open in IMG/M
3300005539\|Ga0068853_100136858	Not Available	2196	Open in IMG/M
3300005539\|Ga0068853_100472227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1182	Open in IMG/M
3300005545\|Ga0070695_101860297	All Organisms → cellular organisms → Bacteria → Proteobacteria	506	Open in IMG/M
3300005546\|Ga0070696_100002786	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	11603	Open in IMG/M
3300005546\|Ga0070696_100220616	All Organisms → cellular organisms → Bacteria → Proteobacteria	1423	Open in IMG/M
3300005547\|Ga0070693_101600992	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300005563\|Ga0068855_100243736	All Organisms → cellular organisms → Bacteria → Proteobacteria	2007	Open in IMG/M
3300005563\|Ga0068855_102343665	Not Available	534	Open in IMG/M
3300005564\|Ga0070664_100634003	All Organisms → cellular organisms → Bacteria	993	Open in IMG/M
3300005577\|Ga0068857_100241365	Not Available	1654	Open in IMG/M
3300005578\|Ga0068854_100423369	All Organisms → cellular organisms → Bacteria	1106	Open in IMG/M
3300005614\|Ga0068856_100004519	All Organisms → cellular organisms → Bacteria → Proteobacteria	13832	Open in IMG/M
3300005616\|Ga0068852_100354774	All Organisms → cellular organisms → Bacteria → Proteobacteria	1433	Open in IMG/M
3300005616\|Ga0068852_100551167	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1153	Open in IMG/M
3300005618\|Ga0068864_100001285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	20888	Open in IMG/M
3300005841\|Ga0068863_102013127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	587	Open in IMG/M
3300005889\|Ga0075290_1051168	All Organisms → cellular organisms → Bacteria → Proteobacteria	570	Open in IMG/M
3300006175\|Ga0070712_101612690	All Organisms → cellular organisms → Bacteria → Proteobacteria	568	Open in IMG/M
3300006755\|Ga0079222_10213716	All Organisms → cellular organisms → Bacteria	1174	Open in IMG/M
3300006806\|Ga0079220_10079335	All Organisms → cellular organisms → Bacteria → Proteobacteria	1643	Open in IMG/M
3300006903\|Ga0075426_10377894	All Organisms → cellular organisms → Bacteria	1044	Open in IMG/M
3300006903\|Ga0075426_10654339	All Organisms → cellular organisms → Bacteria → Proteobacteria	787	Open in IMG/M
3300009093\|Ga0105240_10102931	All Organisms → cellular organisms → Bacteria → Proteobacteria	3470	Open in IMG/M
3300009101\|Ga0105247_10360376	Not Available	1025	Open in IMG/M
3300009148\|Ga0105243_10724857	All Organisms → cellular organisms → Bacteria	972	Open in IMG/M
3300009156\|Ga0111538_11257327	All Organisms → cellular organisms → Bacteria	935	Open in IMG/M
3300009174\|Ga0105241_10067603	All Organisms → cellular organisms → Bacteria → Proteobacteria	2766	Open in IMG/M
3300009174\|Ga0105241_10308922	Not Available	1360	Open in IMG/M
3300009174\|Ga0105241_10732338	All Organisms → cellular organisms → Bacteria	905	Open in IMG/M
3300009545\|Ga0105237_11919548	Not Available	600	Open in IMG/M
3300010375\|Ga0105239_10323672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp.	1739	Open in IMG/M
3300012989\|Ga0164305_10855368	All Organisms → cellular organisms → Bacteria → Proteobacteria	760	Open in IMG/M
3300013102\|Ga0157371_10134256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	1762	Open in IMG/M
3300013104\|Ga0157370_10049579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4018	Open in IMG/M
3300013105\|Ga0157369_12490214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	524	Open in IMG/M
3300013307\|Ga0157372_11405878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	804	Open in IMG/M
3300015371\|Ga0132258_10204063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4797	Open in IMG/M
3300021413\|Ga0193750_1061891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	752	Open in IMG/M
3300025904\|Ga0207647_10365997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	815	Open in IMG/M
3300025907\|Ga0207645_10462481	All Organisms → cellular organisms → Bacteria → Proteobacteria	857	Open in IMG/M
3300025912\|Ga0207707_10034980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4393	Open in IMG/M
3300025913\|Ga0207695_10346226	Not Available	1374	Open in IMG/M
3300025913\|Ga0207695_10515380	All Organisms → cellular organisms → Bacteria	1078	Open in IMG/M
3300025914\|Ga0207671_10148396	All Organisms → cellular organisms → Bacteria	1810	Open in IMG/M
3300025915\|Ga0207693_11122443	Not Available	596	Open in IMG/M
3300025917\|Ga0207660_10884689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	729	Open in IMG/M
3300025917\|Ga0207660_10950379	All Organisms → cellular organisms → Bacteria → Proteobacteria	701	Open in IMG/M
3300025920\|Ga0207649_10009149	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	5416	Open in IMG/M
3300025920\|Ga0207649_10439151	All Organisms → cellular organisms → Bacteria → Proteobacteria	983	Open in IMG/M
3300025921\|Ga0207652_10136056	Not Available	2194	Open in IMG/M
3300025922\|Ga0207646_10753846	Not Available	869	Open in IMG/M
3300025925\|Ga0207650_10007106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	7627	Open in IMG/M
3300025929\|Ga0207664_10701161	All Organisms → cellular organisms → Bacteria	910	Open in IMG/M
3300025932\|Ga0207690_11625478	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300025942\|Ga0207689_10003696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	13945	Open in IMG/M
3300025944\|Ga0207661_10426920	All Organisms → cellular organisms → Bacteria	1204	Open in IMG/M
3300025945\|Ga0207679_10206504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1644	Open in IMG/M
3300025945\|Ga0207679_11786534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	562	Open in IMG/M
3300025949\|Ga0207667_11202807	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300025972\|Ga0207668_10029409	All Organisms → cellular organisms → Bacteria	3601	Open in IMG/M
3300025972\|Ga0207668_10187985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1634	Open in IMG/M
3300025981\|Ga0207640_10192823	Not Available	1537	Open in IMG/M
3300026041\|Ga0207639_10565576	All Organisms → cellular organisms → Bacteria	1045	Open in IMG/M
3300026067\|Ga0207678_10004770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	12167	Open in IMG/M
3300026078\|Ga0207702_10477932	All Organisms → cellular organisms → Bacteria	1212	Open in IMG/M
3300026116\|Ga0207674_10005199	All Organisms → cellular organisms → Bacteria → Proteobacteria	15493	Open in IMG/M
3300026116\|Ga0207674_10035394	All Organisms → cellular organisms → Bacteria	5211	Open in IMG/M
3300027725\|Ga0209178_1100205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	967	Open in IMG/M
3300027842\|Ga0209580_10484603	All Organisms → cellular organisms → Bacteria → Proteobacteria	616	Open in IMG/M
3300031938\|Ga0308175_100290290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1662	Open in IMG/M
3300031938\|Ga0308175_100711498	All Organisms → cellular organisms → Bacteria → Proteobacteria	1091	Open in IMG/M
3300031939\|Ga0308174_11902209	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300031996\|Ga0308176_11151467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	821	Open in IMG/M
3300032074\|Ga0308173_10016747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4806	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	57.14%
Environmental	Environmental	42.86%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	57.14%
Terrestrial	Environmental → Terrestrial	42.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	42.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere	37.59%
Rhizoplane	Host-Associated → Plants → Rhizoplane	19.55%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	33.83%
Soil	Host-Associated → Plants → Rhizosphere → Soil	24.06%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	16.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.53%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	8.27%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.26%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.75%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.75%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	33.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	24.06%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	16.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.53%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.76%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	2.26%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.26%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	17.29%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	16.54%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	12.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	12.03%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	6.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	3.01%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.01%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.01%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.26%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.26%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.50%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.50%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	1.50%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.50%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.75%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.75%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.75%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005889	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_201	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300021413	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1	Environmental	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0065712_106432712	3300005290	Miscanthus Rhizosphere	MKHPPTLAPLAAPQGAGQSVGAALPDWMKHPPTLAPLAAPQGASQSVGAALPD*
Ga0065715_102606242	3300005293	Miscanthus Rhizosphere	MKHPPTLAPLAAPQGAGQSVGAALPDWMKHPPTLAPLAAPQGAGQSVGAALP
Ga0070658_100764683	3300005327	Corn Rhizosphere	MERPPTLAPLAAPRGADQSVGVALPDWDERPPTLAPLAAPRGADQSVGAALPD*
Ga0070658_101790671	3300005327	Corn Rhizosphere	MELRPTLAALAAPRGADQSVGAALPDWMERPPTLAALAAPRGADQSVG
Ga0070658_102713902	3300005327	Corn Rhizosphere	MKRPPTLAALAAPRGAGQSVGAALPDSDEHPPTLAVLAAPRGAGQSVGAALPD*
Ga0070658_110065532	3300005327	Corn Rhizosphere	MKRPRTLASLAAPRRAVQSVRAALPDWDERPPTLASLAAPRGAGQSLGAALHD*
Ga0070676_100017864	3300005328	Miscanthus Rhizosphere	MKHPPTLAPLAAPQGAGQSVGAALPDWMKHPPTLAPLAAPQGAGQSVGAALPD*
Ga0070676_106141362	3300005328	Miscanthus Rhizosphere	MKHPPTLAPLAALQGAGQSVGAALPDSDQLPPTLAPLAAP
Ga0070683_1000045861	3300005329	Corn Rhizosphere	DERPPTLAPLAAPEGADQSVGAALPDWDERPPTLAPLAAPEGADQSVGAALPD*
Ga0070683_1001935121	3300005329	Corn Rhizosphere	MKPPPTLAPLAAPEGADQSVGAALPDWDARPPTLAPLAAPEGADQSVGAALPDWDERPPTLA
Ga0070683_1008622291	3300005329	Corn Rhizosphere	MERPPTLAALAAPRGADQSVGAALPDWMERPPTLAALAAPRGADQSVG
Ga0070670_10000374914	3300005331	Switchgrass Rhizosphere	MKHPPTLAPLAAPQGASQSVGAALPDWMKHPPMLAPLAAPQGASQSVGAALPD*
Ga0068869_1001106312	3300005334	Miscanthus Rhizosphere	MKHPPTLAPLAAPQGAGQSVGAALPDSMKHPPTLAPLAAPQGAGQSVGAALPD*
Ga0070680_1002338961	3300005336	Corn Rhizosphere	MKPPPTLAPLAAPEGADQSVGAALPDWDERPPTLAPLAAPEGADQSVGAALPDWD
Ga0070680_1002863662	3300005336	Corn Rhizosphere	MKHPPTLAPLAAPPGAGQSFGAALHDWDEHPPTLAPLAAPRGAGQSFGAALHD*
Ga0070680_1003917331	3300005336	Corn Rhizosphere	LRDWKRPPTLAALAAPRGAGQSLGSALRDWKRPPTLAALAAPRGAGQSLGSALRD*
Ga0070680_1005052032	3300005336	Corn Rhizosphere	RPPTLAALAAPRGADQSVGAALPDWMERPPTLAALAAPRGADQSVGAALPD*
Ga0070680_1007450092	3300005336	Corn Rhizosphere	GAALPDWDERPPTLAPLAAPEGADQSVGAALPDWDARPPTLAPLAAPEGADQSVGAALPD
Ga0070680_1009805952	3300005336	Corn Rhizosphere	MKHPPTLAPLAAPRGAGQSVGAALPDWDEHPPTLAPLAAPRGAGQSVGAALPD*
Ga0070682_1000444882	3300005337	Corn Rhizosphere	MKPPPTLAPLAAPEGADQSVGAALPDWDERPPTLAPLAAPE
Ga0070682_1013549962	3300005337	Corn Rhizosphere	MKHPPTLAPLAAPPGAGQSFGAALHDWDEHPPTLAPLAAPRGAGQS
Ga0068868_1005735922	3300005338	Miscanthus Rhizosphere	MKHPPTLAPLAALQGAGQSVGAALPDSDQLPPTLAPLAAPQGAGQSVGAALPD*
Ga0070660_1000209193	3300005339	Corn Rhizosphere	MEHPPTLAPLAAPRGAGQSLGAARRDSEEHPPTLAPLAAPRGAGQSLGAARRD*
Ga0070660_1000526461	3300005339	Corn Rhizosphere	MERPPTLAALAAPRGADQSVGAALPDWMERPPTLAALAAPRGADQSVGA
Ga0070660_1002085742	3300005339	Corn Rhizosphere	REGVSRLMAHPPTRAPLAAPRGAGQSVGAALPDWDERPPTLAPLAAPRGAGQSVGTALPD
Ga0070660_1003742112	3300005339	Corn Rhizosphere	MKPPPTLAALAAPEGADQSVGAALPDWDERPPTLAPLAAPEGADQSVGAALPD*
Ga0070660_1003971933	3300005339	Corn Rhizosphere	MKHPPTLAALAAPRGAGQSVGAALPDWDEHPPTLAALAAPRGAGQSVGAALPD*
Ga0070689_1003688701	3300005340	Switchgrass Rhizosphere	PPTLAPLAAPQGAGQSVGAALPDSMKHPPTLAPLAAPQGAGQSVGAALPD*
Ga0070661_1001370413	3300005344	Corn Rhizosphere	MKPPLTLAALAAPEGADQSVGAALPDWDERPPTLAALAAPEGADQSVGAALPD*
Ga0070661_1005252901	3300005344	Corn Rhizosphere	TLAALAAPQGAGQSLGTARRDSVKRPPTLAALAAPQGAGQSLGTARRD*
Ga0070661_1008394382	3300005344	Corn Rhizosphere	MELRPTLAALAAPRGADQSVGAALPDWMERPPTLAALAAPRGADQSVGAALPD*
Ga0070661_1013515122	3300005344	Corn Rhizosphere	GAALPDSMKHPPTLAPLAAPQGAGQSVGAALPDSMKHPPTLAPLAAPQGAGQSVGAALPD
Ga0070692_100737951	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MKPPPTLAPLAAPEGADQSVGAALPDWDERPPTLAPLAAPEGADQSVGAALPDWDE
Ga0070668_1001935321	3300005347	Switchgrass Rhizosphere	MKHPPTLAPLAAPQGASQSVGAALPDWMKHPPTLAPLAAPQGASQSVGAALPD
Ga0070673_1003846033	3300005364	Switchgrass Rhizosphere	MKHPPTLAPLAALQGAGQSVGAALPDSDQLPPTLAPLAALQGAGQSVGAALPD*
Ga0070688_1001996331	3300005365	Switchgrass Rhizosphere	MKHPPTLAPLAAPQGASQSVGAALPDWMKHPPTLAPLAAPQGA
Ga0070659_1001438142	3300005366	Corn Rhizosphere	MEHPPTLAPLAAPPGAGQSFGAALHDWDEHPPTLAPLAAPRGAGQSFGAALHD*
Ga0070714_1002258012	3300005435	Agricultural Soil	MKHPPTLAPLAAPQGADQSVGAALPDWDEHPPTLAPLAAPRGADQSVGAALPD*
Ga0070714_1008344063	3300005435	Agricultural Soil	MKHPPTLAPLAAPQGAGQSVGAALPDWDGHPPTLAPLAAPRGAGQSVGAALPD*
Ga0070714_1023825371	3300005435	Agricultural Soil	MKHPPTLALLAAPQGAGQSVGAALPDWDEHPPTLALLAAPQGAGQSVGAALPD*
Ga0070713_1015162401	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	WDEHPPTLAPLAAPRGAGQSVGAALPAWDEHPPTLAPLAAPRGAGQSVGAALPA*
Ga0070713_1015845262	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MERPPTLAPLAAPRGADQSVGAALPDWDERPPTLAPLAAPRGAGQSVGAALPDW
Ga0070710_103023181	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MKHPPTLALLAAPQGAGQPVGAALPGWDEHPPTLALLAAPQGAGQPVGAALPG*
Ga0070710_107917621	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MKHPPTLAPLAARRGAGQSVGAALPDWDGHPPTLALLAAPRGAGQSVGAALPD
Ga0070711_1000580172	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MKHPPTLAPLAAPQGAGQSVGAALPDWDGHPPTLALLAAPQGAGQSVGAALPD*
Ga0070711_1006221462	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MKHPPTLALLAAPRGAGRLLGAPLRNWDERPPTLAPLAAPRG
Ga0070694_1004662911	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MKHPPTLAPLAAPQGAGQSVGAALPDWMKHPPMLAPLAAPQG
Ga0070663_1000973151	3300005455	Corn Rhizosphere	MKHPPTLAALAAPRGAGQSVGAALPDWKHPPTLAALAAPRGAGQSVGAALPD*
Ga0070663_1002826912	3300005455	Corn Rhizosphere	MKHPPTLAPLAAPQGASQSVGAALPDWMKHPPTLAPLAAPQGAGQSVGAALPD*
Ga0070678_1022459281	3300005456	Miscanthus Rhizosphere	LAPLAAPQGASQSVGAALPDWMKHPPMLAPLAAPQGASQSVGAALPD*
Ga0070681_103957411	3300005458	Corn Rhizosphere	MKRPPTLALLAAPRGAGQSVGAALPDWDEHPPTLAPLAAPRG
Ga0068867_1002444171	3300005459	Miscanthus Rhizosphere	MKHPPTLAPLAAPQGAGQSVGAALPDSMKHPPTLAPLAAPQGAGQSVGAALPD
Ga0070699_1013129041	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MKHPPTLAPLTAPRGAGQSVGAALPAWDEHPPTLAPLAAP
Ga0070699_1016638022	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MKHPPTLAALAAPQGAGQSVGAALPDLMKRPPTLAALAAPQGAGQSVGAALPD*
Ga0070679_1001417413	3300005530	Corn Rhizosphere	MQHPPTLAPLAAPRGAGQSVGAALPDWDERPPTLAPLAAPEGADQSVGAALPDWDE
Ga0070679_1003778593	3300005530	Corn Rhizosphere	MKRSPTLAALAAPRGVGQSVGAALPDWDRHPPTLAALAAPRGVGQSVGAALPD*
Ga0070679_1011076812	3300005530	Corn Rhizosphere	VKRPPTLAALAAPQGAGQSLGTARRDSVKRPPTLAALAAPQGAGQSLGTARRD
Ga0070679_1019476362	3300005530	Corn Rhizosphere	MERPPTLAPLAAPRGADQSVGAALPDWDERPPTLAPLAAPRGADQSVGAALPD*
Ga0070684_1013177882	3300005535	Corn Rhizosphere	MKHSSTLAPLAAPRGARQSLGAARRDFIHPPTLAPLAAPRGAGQSLGAARRD*
Ga0068853_1001368582	3300005539	Corn Rhizosphere	MKPPPTLAPLAAPEGADQSVGAALPDWDERPPTLAPLAAAE
Ga0068853_1004722271	3300005539	Corn Rhizosphere	MKRPRTLASLAAPRRAVQSVRAALPDWDERPPTLASLAAPRGA
Ga0070695_1018602971	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MKHPPTLAPLAAPRGAGQSVGAALPDWDEHPPTLAPLAAPRGA
Ga0070696_10000278611	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MKHPPTLAPLAAPRGAGQSVGAALPDWDGHPPTLALLAAP
Ga0070696_1002206163	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	RMKHPPTLAPLAAPQGAGQSVGAALPDWLKHPPTLAPLAALQGAGQSVGAALPD*
Ga0070693_1016009921	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MKHPPTLAPLAALQGAGQSVGAALPDSDQLPPTLAPLAALQGAGQSVGAALPDSDQLPPTLA
Ga0068855_1002437363	3300005563	Corn Rhizosphere	LAAPRGAGQSVGAALPDWDERPPTLAALAAPRGAGQSVGAALPD*
Ga0068855_1023436651	3300005563	Corn Rhizosphere	MKHPPTLAPLATRRGAGQSVGAALPDWDGHPPTLAAPRGAGQSVGAALPDWDGHPPTLAPLA
Ga0070664_1006340031	3300005564	Corn Rhizosphere	LAPLAAPEGADQSVGAALPDWDERPPTLAALAAPEGADQSVGAALPD*
Ga0068857_1002413652	3300005577	Corn Rhizosphere	TLAPLAAPQGAGQSVGAALPDWDEHPPTLAPLAAPRGAGQSVGAALPD*
Ga0068854_1004233691	3300005578	Corn Rhizosphere	MKPPPTLAALAAPEGADQSVGAALPDWDERPPTLAPLAAPEGADQSVG
Ga0068856_1000045191	3300005614	Corn Rhizosphere	MKPPPTLAPLAAPEGADQSVGAALPDWDERPPTLAPLAAPEGADQSVGAALPDWDARPPTLAPLA
Ga0068852_1003547743	3300005616	Corn Rhizosphere	MKHPPTLAPLAALQGAGQSVGAALPDSDQLPPTLAPLAALQGAGQSVGA
Ga0068852_1005511673	3300005616	Corn Rhizosphere	MKHPPTLAALAAPRGAGQSVGAALPDWKHPPTLATLAAPRGAGQSVGAALPD*
Ga0068864_10000128524	3300005618	Switchgrass Rhizosphere	MKHPPTLAPLAAPQGAGQSVGAALPDWMKHPPMLAPLAAPQGASQSVGAALPD*
Ga0068863_1020131272	3300005841	Switchgrass Rhizosphere	IRMKHPPTLAPLAAPQGASQSVGAALPDWMKHPPTLAPLAAPQGAGQSVGAALPD*
Ga0075290_10511681	3300005889	Rice Paddy Soil	MKHPPTLASLAAPRGAGQSVGAALPDWDEHPPTLA
Ga0070712_1016126902	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MKPPLTLAALAAPEGADQSVGAALPDWDERPPTLAPLAAPRGAGQSVGAALPDW
Ga0079222_102137162	3300006755	Agricultural Soil	MKHPPTLAPLAAPRGAGLSLGTALRDKHPPTLAPLAAPRGAGPSLGTALRD*
Ga0079220_100793353	3300006806	Agricultural Soil	MKRPPTLAPLAAPRGARQRVGAALPAWDEDPPTLAPLAAPRGARQSVGAALPA*
Ga0075426_103778942	3300006903	Populus Rhizosphere	MKPPPTLAALAAPEGADQSVGAALPDWDERPPTLA
Ga0075426_106543392	3300006903	Populus Rhizosphere	MEHPPTLAPLAAPRGAGQSVGAALPDWDEHPPTLAPLAAPQGAGQSVGAALPD*
Ga0105240_101029315	3300009093	Corn Rhizosphere	MKRPPTLAPLAAPRGARQRVGAALPAWDEDPPTLAPLAA
Ga0105247_103603761	3300009101	Switchgrass Rhizosphere	MKHPPTLAPLAAPQGASQSVGAALPDWMKHPPMLAPLAAPQGASQSVGAALPD
Ga0105243_107248571	3300009148	Miscanthus Rhizosphere	PTLAPLAAPQGAGQSVGAALPDWMKHPPTLAPLAAPQGAGQSVGAALPD*
Ga0111538_112573272	3300009156	Populus Rhizosphere	MKHPPTLAPLDPPQGAGQSVGAALPDWMKHPPTLAPLAAPQGAGQSVGAALPDWMKHPP
Ga0105241_100676031	3300009174	Corn Rhizosphere	HPPTLASLAAPRGASQSVGAALPDWDEHPPTLASLAAPRGASQSVGAALPD*
Ga0105241_103089221	3300009174	Corn Rhizosphere	MKPPPTLAPLAAPEGADQSVGAALPDWDERPPMLAPLDAPEGADQSV
Ga0105241_107323382	3300009174	Corn Rhizosphere	PTSASPRMKPPPTLAPLAAPEGADQSVGAALPDWDERPPTLAPLAAPEGADQSVGAALPD
Ga0105237_119195482	3300009545	Corn Rhizosphere	MKHPPTLAPLAAPQGASQSVGAALPDWMKHPPTLAPLAAPQGAGQSVGAALPDS
Ga0105239_103236722	3300010375	Corn Rhizosphere	MEHPPTLAPLAAPQGAGQSFGAALHDWDEHPPTLAPLAAPRGAGQSFGAALHD*
Ga0164305_108553681	3300012989	Soil	MTHPPTLAPLAAPPGAGQSFGAALHDWDEHPPTLAPLAGP
Ga0157371_101342563	3300013102	Corn Rhizosphere	MEQPPTLAPLAAPPGAGQSFGAALHDWDEHPPTLAPLAAPRGAGQSFGAALHD*
Ga0157370_100495792	3300013104	Corn Rhizosphere	MKHPRTLASLAAPRGAGQSVGAALPDWDERPPTLAPLAAPRGAGQSLGAALHD*
Ga0157369_124902142	3300013105	Corn Rhizosphere	MKHPPTLAPLDAPEGADQSVGAALPNWAERPPTLAALAA
Ga0157372_114058781	3300013307	Corn Rhizosphere	MKPPPTLAALAAPEGADQSVGAALPDWDERPPTLAPLAA
Ga0132258_102040636	3300015371	Arabidopsis Rhizosphere	MEHPSKLAPLAASQGAGQSVGAALPDSKHPPTLAALAAPRGVGQSVGAAFPD*
Ga0193750_10618912	3300021413	Soil	MKKILPTLATPRGAGQSVGAARPDSDEHPPTLAPLAAPRGAGQSVGAALPDLT
Ga0207647_103659972	3300025904	Corn Rhizosphere	MKHPPTLAPLAALQGAGQSVGAALPDSDQLPPTLAPLAALQGAGQSVGAAL
Ga0207645_104624811	3300025907	Miscanthus Rhizosphere	PPTLAPLAAPQGASQSVGAALPDWMKHPPTLAPLAAPQGASQSVGAALPD
Ga0207707_100349804	3300025912	Corn Rhizosphere	MKPPPTLAPLAAPEGADQSVGAALPDWDERPPTLAP
Ga0207695_103462261	3300025913	Corn Rhizosphere	MKPPPTLAPLAAPEGADQSVGAALPDWDARPPTLAPLAA
Ga0207695_105153801	3300025913	Corn Rhizosphere	WDERPPTLAPLAAPEGADQSVGAALPDWDERPPTLAALAAPEGADQSVGAALPD
Ga0207671_101483962	3300025914	Corn Rhizosphere	MEHPPTLAPLAAPPGAGQSFGAALHDWDEHPPTLAPLAAPRGAGQSFGAALHD
Ga0207693_111224432	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MSRMKHPPTLAPLAARRGAGQSVGAALPDWDEHPPTLAPLAARRGAGQSVGAAL
Ga0207660_108846892	3300025917	Corn Rhizosphere	MKHPPTLAPLAALQGAGQSVGAALPDSDQLPPTLAPLAALQGAGQSVGAALPD
Ga0207660_109503791	3300025917	Corn Rhizosphere	MERPPTLAPLAAPRGADQSVGVALPDWDERPPTLAPLAAPRGADQSVGAALPDWDA
Ga0207649_100091497	3300025920	Corn Rhizosphere	MKHPPTLAPLAALQGAGQSVGAALPDSDQLPPTLAPLAAPQGAGQSVGA
Ga0207649_104391513	3300025920	Corn Rhizosphere	LTLAALAAPQGAGQSLGTARRDSVKRPPTLAALAAPQGAGQSLGTARRD
Ga0207652_101360562	3300025921	Corn Rhizosphere	MKPPPTLAPLAAPEGADQSVGAALPDWDERPPTLAPLAAPEGADQSVGAALPDWDERPPT
Ga0207646_107538461	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MSRMKHPPTLAPLAARRGAGQSVGAALPDWDEHPPTLAPLAARRGAGQSVGAALPDWDE
Ga0207650_100071061	3300025925	Switchgrass Rhizosphere	MKHPPTLAPLAAPQGAGQSVGAALPDWMKHPPTLAPL
Ga0207664_107011611	3300025929	Agricultural Soil	LPDWDERPPTLAPLAAPEGADQSVGAALPDWDERPPTLAPLAAPEGADQSVGAALPD
Ga0207690_116254782	3300025932	Corn Rhizosphere	MKHPPTLAPLAAPQGAGQSVGAALPDWMKHPPTLAPLAAPQGAG
Ga0207689_100036962	3300025942	Miscanthus Rhizosphere	MKHPPTLAPLAAPQGAGQSVGAALPDWMKHPPTLAPLAAPQGAGQSVGAALPD
Ga0207661_104269202	3300025944	Corn Rhizosphere	MKPPPTLAPLAAPEGADQSVGAALPDWDARPPTLAPLAAPEGAD
Ga0207679_102065041	3300025945	Corn Rhizosphere	MERPPTLAPLAAPRGADQSVGVALPDWDERPPTLAPLAAPRGADQSVGAALPDWDERPP
Ga0207679_117865341	3300025945	Corn Rhizosphere	PARLGWNVPPTLAALAAPRGADQSVGAALPDWMERPPTLAALAAPRGADQSVGAALPD
Ga0207667_112028071	3300025949	Corn Rhizosphere	MKHPPTLAPLAAPQGAGQSVGAALPDWMKHPPTLAPLAAP
Ga0207668_100294094	3300025972	Switchgrass Rhizosphere	MKHPPTFAPLAAPQGAGQSVGAALPDWMKHPPTLAPLAAPQGAGQSVG
Ga0207668_101879853	3300025972	Switchgrass Rhizosphere	RMKHPPTLAPLAAPQGAGQSVGAALPDWMKHPPTLAPLAAPQGAGQSVGAALPD
Ga0207640_101928231	3300025981	Corn Rhizosphere	MKPPPTLAALAAPEGADQSVGAALPDWDERPPTLAPLAAPEGADQSVGAA
Ga0207639_105655761	3300026041	Corn Rhizosphere	MKPPPTLAPLAAPEGADQSVGAALPDWDERPPTLAPLAAAEG
Ga0207678_100047701	3300026067	Corn Rhizosphere	MKPPPTLAPLAAPEGADQSVGAALPDWDERPPTLA
Ga0207702_104779322	3300026078	Corn Rhizosphere	MKPPPTLAPLAAPEGADQSVGAALPDWDARPPTLAPLAAPEGA
Ga0207674_100051993	3300026116	Corn Rhizosphere	MEHPPTLAPLAAPQGAGQSFGAALHDWDEHPPTLAPLAAPRGAGQSFGAALHD
Ga0207674_100353941	3300026116	Corn Rhizosphere	PTLAPLAAPQGAGQSVGAALPDWDEHPPTLAPLAAPRGAGQSVGAALPD
Ga0209178_11002051	3300027725	Agricultural Soil	MKHPPTLAPLAAPPGAGQSFGAALHDWDEHPPTLAPL
Ga0209580_104846031	3300027842	Surface Soil	MKHPPTLAPLAAPRGADQSVGAALPDWDEHPPTLAPLAAPRGADQ
Ga0308175_1002902904	3300031938	Soil	MRHPPTLALLAAPRGAGQSVGAALPDWDEHPPTLALLAAPRGAGQSLGAAL
Ga0308175_1007114981	3300031938	Soil	MERFPTLAAPEGADRSVGAALPDWKRPPTLASLAAPRGAGQSVGAALPDWK
Ga0308174_119022092	3300031939	Soil	MKRPPTLAALAAPEGADQSVGAALPDWDERPPTLAPLAAPEGA
Ga0308176_111514673	3300031996	Soil	MRHPPTLALLAAPRGAGQSVGAALPDWDEHPPTLA
Ga0308173_100167473	3300032074	Soil	MKRPTTLVPLAAPREAGQSVGAALPDWMKHPPRSLRSLPPQGAGQSVGAALPD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F060190

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences