NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F060191

Metagenome / Metatranscriptome Family F060191

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F060191
Family Type Metagenome / Metatranscriptome
Number of Sequences 133
Average Sequence Length 41 residues
Representative Sequence VTEVPDEAWESDDCVRRTVVMPAVLAERLAARAEQRGLSVSDL
Number of Associated Samples 126
Number of Associated Scaffolds 133

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 98.50 %
% of genes near scaffold ends (potentially truncated) 96.99 %
% of genes from short scaffolds (< 2000 bps) 93.23 %
Associated GOLD sequencing projects 122
AlphaFold2 3D model prediction Yes
3D model pTM-score0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (91.729 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(21.804 % of family members)
Environment Ontology (ENVO) Unclassified
(27.820 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(45.113 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 23.94%    β-sheet: 0.00%    Coil/Unstructured: 76.06%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.44
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 133 Family Scaffolds
PF13434Lys_Orn_oxgnase 17.29
PF07992Pyr_redox_2 6.02
PF01402RHH_1 4.51
PF02657SufE 1.50
PF07969Amidohydro_3 1.50
PF00398RrnaAD 0.75
PF08240ADH_N 0.75
PF02635DrsE 0.75
PF02913FAD-oxidase_C 0.75
PF09391DUF2000 0.75
PF13738Pyr_redox_3 0.75

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 133 Family Scaffolds
COG2166Sulfur transfer protein SufE, Fe-S cluster assemblyPosttranslational modification, protein turnover, chaperones [O] 1.50
COG003016S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity)Translation, ribosomal structure and biogenesis [J] 0.75
COG0277FAD/FMN-containing lactate dehydrogenase/glycolate oxidaseEnergy production and conversion [C] 0.75

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms91.73 %
UnclassifiedrootN/A8.27 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2189573003|GZIR7W402FZ4JLAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii539Open in IMG/M
3300000955|JGI1027J12803_108176861All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales647Open in IMG/M
3300000956|JGI10216J12902_114771634All Organisms → cellular organisms → Bacteria → Terrabacteria group531Open in IMG/M
3300000956|JGI10216J12902_115716160All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi614Open in IMG/M
3300004114|Ga0062593_103252577All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales521Open in IMG/M
3300004281|Ga0066397_10052648All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi739Open in IMG/M
3300005147|Ga0066821_1004306All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii855Open in IMG/M
3300005172|Ga0066683_10591021All Organisms → cellular organisms → Bacteria → Terrabacteria group674Open in IMG/M
3300005187|Ga0066675_10777592All Organisms → cellular organisms → Bacteria → Terrabacteria group722Open in IMG/M
3300005334|Ga0068869_101870517All Organisms → cellular organisms → Bacteria → Terrabacteria group537Open in IMG/M
3300005341|Ga0070691_10927915All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi539Open in IMG/M
3300005434|Ga0070709_10274120All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii1223Open in IMG/M
3300005435|Ga0070714_101326236All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii702Open in IMG/M
3300005436|Ga0070713_102229257All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii530Open in IMG/M
3300005439|Ga0070711_100020537All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales4258Open in IMG/M
3300005563|Ga0068855_101969579All Organisms → cellular organisms → Bacteria → Terrabacteria group591Open in IMG/M
3300005602|Ga0070762_10657152All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi700Open in IMG/M
3300005712|Ga0070764_10314735All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii907Open in IMG/M
3300005764|Ga0066903_101085949All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii1473Open in IMG/M
3300005834|Ga0068851_10293921All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii932Open in IMG/M
3300005843|Ga0068860_101579205All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi678Open in IMG/M
3300005921|Ga0070766_10838130All Organisms → cellular organisms → Bacteria → Terrabacteria group628Open in IMG/M
3300006175|Ga0070712_101612169All Organisms → cellular organisms → Bacteria → Terrabacteria group568Open in IMG/M
3300006175|Ga0070712_101638757All Organisms → cellular organisms → Bacteria → Terrabacteria group563Open in IMG/M
3300006176|Ga0070765_100581182All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1056Open in IMG/M
3300006579|Ga0074054_11676751All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii831Open in IMG/M
3300006804|Ga0079221_11499512All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi541Open in IMG/M
3300006893|Ga0073928_10152661All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales1861Open in IMG/M
3300006969|Ga0075419_10601754All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi772Open in IMG/M
3300007265|Ga0099794_10345736All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi773Open in IMG/M
3300009098|Ga0105245_10168776All Organisms → cellular organisms → Bacteria2082Open in IMG/M
3300009162|Ga0075423_10778534All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii1012Open in IMG/M
3300009523|Ga0116221_1027443All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2867Open in IMG/M
3300009698|Ga0116216_10616898All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi653Open in IMG/M
3300010371|Ga0134125_10683965All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1132Open in IMG/M
3300010379|Ga0136449_103153982Not Available638Open in IMG/M
3300010868|Ga0124844_1238770All Organisms → cellular organisms → Bacteria → Terrabacteria group645Open in IMG/M
3300012206|Ga0137380_10278157Not Available1503Open in IMG/M
3300012350|Ga0137372_10931271All Organisms → cellular organisms → Bacteria → Terrabacteria group613Open in IMG/M
3300012357|Ga0137384_10747144All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii793Open in IMG/M
3300012357|Ga0137384_10898959All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii714Open in IMG/M
3300012358|Ga0137368_10859148All Organisms → cellular organisms → Bacteria → Terrabacteria group556Open in IMG/M
3300012359|Ga0137385_11393641All Organisms → cellular organisms → Bacteria → Terrabacteria group564Open in IMG/M
3300012473|Ga0157340_1018172All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii571Open in IMG/M
3300012517|Ga0157354_1032386All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii673Open in IMG/M
3300012917|Ga0137395_11090453All Organisms → cellular organisms → Bacteria → Terrabacteria group566Open in IMG/M
3300012955|Ga0164298_10351490All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii934Open in IMG/M
3300013297|Ga0157378_10873961All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii928Open in IMG/M
3300013308|Ga0157375_10664761All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii1197Open in IMG/M
3300014056|Ga0120125_1028061All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1201Open in IMG/M
3300015201|Ga0173478_10246021Not Available779Open in IMG/M
3300016294|Ga0182041_10065129All Organisms → cellular organisms → Bacteria2535Open in IMG/M
3300016371|Ga0182034_11146831All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii675Open in IMG/M
3300016404|Ga0182037_11301767All Organisms → cellular organisms → Bacteria → Terrabacteria group641Open in IMG/M
3300017821|Ga0187812_1218975All Organisms → cellular organisms → Bacteria → Terrabacteria group607Open in IMG/M
3300017926|Ga0187807_1113558All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria856Open in IMG/M
3300017993|Ga0187823_10204289All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii650Open in IMG/M
3300017995|Ga0187816_10388716All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia619Open in IMG/M
3300018040|Ga0187862_10594798All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi656Open in IMG/M
3300018081|Ga0184625_10667828All Organisms → cellular organisms → Bacteria → Terrabacteria group502Open in IMG/M
3300018085|Ga0187772_10183410All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii1399Open in IMG/M
3300019888|Ga0193751_1156146All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi812Open in IMG/M
3300020021|Ga0193726_1270012All Organisms → cellular organisms → Bacteria → Terrabacteria group678Open in IMG/M
3300020170|Ga0179594_10205830All Organisms → cellular organisms → Bacteria → Terrabacteria group738Open in IMG/M
3300020582|Ga0210395_10307736Not Available1191Open in IMG/M
3300021078|Ga0210381_10187197All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi717Open in IMG/M
3300021178|Ga0210408_10449394All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1026Open in IMG/M
3300021181|Ga0210388_10375703All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii1250Open in IMG/M
3300021344|Ga0193719_10112790All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii1182Open in IMG/M
3300021401|Ga0210393_10647434All Organisms → cellular organisms → Bacteria → Terrabacteria group862Open in IMG/M
3300021406|Ga0210386_10269582All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii1455Open in IMG/M
3300021406|Ga0210386_10699652All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii873Open in IMG/M
3300021432|Ga0210384_11438303All Organisms → cellular organisms → Bacteria → Terrabacteria group595Open in IMG/M
3300021432|Ga0210384_11817622All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi515Open in IMG/M
3300021445|Ga0182009_10721361All Organisms → cellular organisms → Bacteria → Terrabacteria group541Open in IMG/M
3300021475|Ga0210392_10441543All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi953Open in IMG/M
3300021559|Ga0210409_10465719Not Available1126Open in IMG/M
3300022498|Ga0242644_1024728Not Available620Open in IMG/M
3300022709|Ga0222756_1009894Not Available1076Open in IMG/M
3300022724|Ga0242665_10308636All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii556Open in IMG/M
3300022756|Ga0222622_11059058All Organisms → cellular organisms → Bacteria → Terrabacteria group596Open in IMG/M
3300022899|Ga0247795_1001142All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4444Open in IMG/M
3300024279|Ga0247692_1014211All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1220Open in IMG/M
3300025907|Ga0207645_10413383All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi908Open in IMG/M
3300025911|Ga0207654_11278666All Organisms → cellular organisms → Bacteria → Terrabacteria group535Open in IMG/M
3300025922|Ga0207646_10046920All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3876Open in IMG/M
3300025927|Ga0207687_11363111All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi610Open in IMG/M
3300025927|Ga0207687_11874641All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi513Open in IMG/M
3300025935|Ga0207709_10015207All Organisms → cellular organisms → Bacteria4266Open in IMG/M
3300025939|Ga0207665_11004942All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi664Open in IMG/M
3300026356|Ga0257150_1043158All Organisms → cellular organisms → Bacteria → Terrabacteria group661Open in IMG/M
3300026374|Ga0257146_1021320Not Available1053Open in IMG/M
3300026557|Ga0179587_10802771All Organisms → cellular organisms → Bacteria → Terrabacteria group621Open in IMG/M
3300027173|Ga0208097_1008250All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales1113Open in IMG/M
3300027765|Ga0209073_10094798Not Available1046Open in IMG/M
3300027855|Ga0209693_10414259All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii650Open in IMG/M
3300027879|Ga0209169_10531625All Organisms → cellular organisms → Bacteria → Terrabacteria group617Open in IMG/M
3300027882|Ga0209590_10320948All Organisms → cellular organisms → Bacteria996Open in IMG/M
3300027882|Ga0209590_10387528All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii902Open in IMG/M
3300027903|Ga0209488_10891157All Organisms → cellular organisms → Bacteria624Open in IMG/M
3300028379|Ga0268266_12028141All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi549Open in IMG/M
3300028708|Ga0307295_10185792All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi586Open in IMG/M
3300028711|Ga0307293_10134829All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii786Open in IMG/M
3300028719|Ga0307301_10292277All Organisms → cellular organisms → Bacteria → Terrabacteria group534Open in IMG/M
3300028773|Ga0302234_10231056All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi798Open in IMG/M
3300028789|Ga0302232_10415484All Organisms → cellular organisms → Bacteria → Terrabacteria group661Open in IMG/M
3300028809|Ga0247824_10954493All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi539Open in IMG/M
3300028819|Ga0307296_10290082All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii891Open in IMG/M
3300030659|Ga0316363_10333537All Organisms → cellular organisms → Bacteria → Terrabacteria group600Open in IMG/M
3300031170|Ga0307498_10052992Not Available1106Open in IMG/M
3300031231|Ga0170824_101749864All Organisms → cellular organisms → Bacteria → Terrabacteria group643Open in IMG/M
3300031234|Ga0302325_11414458All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii903Open in IMG/M
3300031543|Ga0318516_10162895All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii1282Open in IMG/M
3300031544|Ga0318534_10618029All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi615Open in IMG/M
3300031547|Ga0310887_10377188All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii829Open in IMG/M
3300031549|Ga0318571_10279233All Organisms → cellular organisms → Bacteria → Terrabacteria group622Open in IMG/M
3300031668|Ga0318542_10188773All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii1036Open in IMG/M
3300031681|Ga0318572_10738890All Organisms → cellular organisms → Bacteria → Terrabacteria group586Open in IMG/M
3300031716|Ga0310813_11602704All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi608Open in IMG/M
3300031719|Ga0306917_10099433All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2084Open in IMG/M
3300031736|Ga0318501_10633461All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi588Open in IMG/M
3300031771|Ga0318546_10039920All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2860Open in IMG/M
3300031794|Ga0318503_10174572All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii695Open in IMG/M
3300031831|Ga0318564_10080618All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii1438Open in IMG/M
3300031832|Ga0318499_10226746All Organisms → cellular organisms → Bacteria → Terrabacteria group727Open in IMG/M
3300031833|Ga0310917_10196260All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii1349Open in IMG/M
3300031854|Ga0310904_10442404All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii860Open in IMG/M
3300031860|Ga0318495_10289763All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii730Open in IMG/M
3300031954|Ga0306926_11798318All Organisms → cellular organisms → Bacteria → Terrabacteria group696Open in IMG/M
3300031962|Ga0307479_11353526All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii672Open in IMG/M
3300032001|Ga0306922_10657416Not Available1106Open in IMG/M
3300032010|Ga0318569_10047279All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1850Open in IMG/M
3300032896|Ga0335075_11075661All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi712Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil21.80%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil9.77%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil8.27%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere6.02%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil4.51%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil4.51%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil3.76%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment3.01%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil3.01%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere3.01%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.26%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil2.26%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil2.26%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa2.26%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.50%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.50%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.50%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.50%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.75%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland0.75%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring0.75%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.75%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.75%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.75%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil0.75%
Unplanted SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil0.75%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.75%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.75%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost0.75%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.75%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.75%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.75%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.75%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.75%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil0.75%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.75%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.75%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere0.75%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.75%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.75%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.75%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2189573003Grass soil microbial communities from Rothamsted Park, UK - FE2 (NaCl 30g/L 5ml)EnvironmentalOpen in IMG/M
3300000955Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004281Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBioEnvironmentalOpen in IMG/M
3300005147Soil and rhizosphere microbial communities from Laval, Canada - mgLMCEnvironmentalOpen in IMG/M
3300005172Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132EnvironmentalOpen in IMG/M
3300005187Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124EnvironmentalOpen in IMG/M
3300005334Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2Host-AssociatedOpen in IMG/M
3300005341Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaGEnvironmentalOpen in IMG/M
3300005434Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaGEnvironmentalOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005563Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2Host-AssociatedOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005712Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005834Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2Host-AssociatedOpen in IMG/M
3300005843Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2Host-AssociatedOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006579Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006804Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200EnvironmentalOpen in IMG/M
3300006893Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaGEnvironmentalOpen in IMG/M
3300006969Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3Host-AssociatedOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009523Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaGEnvironmentalOpen in IMG/M
3300009698Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaGEnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300010868Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)EnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012350Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012358Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012473Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.12.yng.090610Host-AssociatedOpen in IMG/M
3300012517Unplanted soil (control) microbial communities from North Carolina - M.Soil.6.yng.070610EnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012955Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MGEnvironmentalOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014056Permafrost microbial communities from Nunavut, Canada - A20_5cm_0MEnvironmentalOpen in IMG/M
3300015201Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)EnvironmentalOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300017821Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2EnvironmentalOpen in IMG/M
3300017926Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2EnvironmentalOpen in IMG/M
3300017993Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3EnvironmentalOpen in IMG/M
3300017995Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1EnvironmentalOpen in IMG/M
3300018040Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150EnvironmentalOpen in IMG/M
3300018081Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1EnvironmentalOpen in IMG/M
3300018085Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300019888Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2EnvironmentalOpen in IMG/M
3300020021Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1EnvironmentalOpen in IMG/M
3300020170Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300021078Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redoEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021344Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2EnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021406Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-OEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021445Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaGEnvironmentalOpen in IMG/M
3300021475Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-OEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300022498Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022709Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022724Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300022899Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S016-104C-6EnvironmentalOpen in IMG/M
3300024279Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK33EnvironmentalOpen in IMG/M
3300025907Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025911Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025927Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025935Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025939Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026356Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-AEnvironmentalOpen in IMG/M
3300026374Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-AEnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300027173Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF036 (SPAdes)EnvironmentalOpen in IMG/M
3300027765Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)EnvironmentalOpen in IMG/M
3300027855Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)EnvironmentalOpen in IMG/M
3300027879Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)EnvironmentalOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300028379Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300028708Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152EnvironmentalOpen in IMG/M
3300028711Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150EnvironmentalOpen in IMG/M
3300028719Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182EnvironmentalOpen in IMG/M
3300028773Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2EnvironmentalOpen in IMG/M
3300028789Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3EnvironmentalOpen in IMG/M
3300028809Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48EnvironmentalOpen in IMG/M
3300028819Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153EnvironmentalOpen in IMG/M
3300030659Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)EnvironmentalOpen in IMG/M
3300031170Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_SEnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031234Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2EnvironmentalOpen in IMG/M
3300031543Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20EnvironmentalOpen in IMG/M
3300031544Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26EnvironmentalOpen in IMG/M
3300031547Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4EnvironmentalOpen in IMG/M
3300031549Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24EnvironmentalOpen in IMG/M
3300031668Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23EnvironmentalOpen in IMG/M
3300031681Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20EnvironmentalOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031719Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)EnvironmentalOpen in IMG/M
3300031736Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21EnvironmentalOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031794Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23EnvironmentalOpen in IMG/M
3300031831Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20EnvironmentalOpen in IMG/M
3300031832Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25EnvironmentalOpen in IMG/M
3300031833Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178EnvironmentalOpen in IMG/M
3300031854Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1EnvironmentalOpen in IMG/M
3300031860Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25EnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032010Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22EnvironmentalOpen in IMG/M
3300032896Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
FE2_031183702189573003Grass SoilMTEVPDEAWESDDCVRRTVVMPAVLAERLAARAEQ
JGI1027J12803_10817686123300000955SoilVSETSDETWERDDCVRRTVVLPTELAERLAAEAERRGLSV
JGI10216J12902_11477163413300000956SoilLSETPEEVWESDDCVRRTVVLPTELAERLAAEAERRG
JGI10216J12902_11571616023300000956SoilLSETPDDVWESDDCVRRTVVIPTELAERLAAEAERRGLS
Ga0062593_10325257723300004114SoilLSETPDDVWESDDCVRRTVVLPTELAERLAAEAERRGLSISDLLSEY
Ga0066397_1005264813300004281Tropical Forest SoilVSETTGEVWESDDCVHRTVVMPIALAERLAARAEQRGLSV
Ga0066821_100430613300005147SoilVTEVPDEAWESDDRVRRTMVMPAGLAERLAARAEQRGLSV
Ga0066683_1059102123300005172SoilLSETPDEVWERDDCVRRTVVLPMELAERLAAEAERRGLSVSDLLI
Ga0066675_1077759213300005187SoilVSETPDEVWERDDCVRRTIVLPTEFAERLAAEAERRGLSVSDLLIEY
Ga0068869_10187051723300005334Miscanthus RhizosphereVTEVPDEAWESDDCVRRTMVMPAVLAERLAARAEQRGLSVSD
Ga0070691_1092791513300005341Corn, Switchgrass And Miscanthus RhizosphereLSETPEDVWESDDCVRRTVVLPIELAERLAAEAERRGLSVS
Ga0070709_1027412023300005434Corn, Switchgrass And Miscanthus RhizosphereLSETPEEVWESDDCVRRTVVLPTELAERLAAEAERRGLSVSDLLI
Ga0070714_10132623623300005435Agricultural SoilVTEVPDEAWESDDCVRRTMVMPAGLAERLAARAEQRGLSVSDLLT
Ga0070713_10222925713300005436Corn, Switchgrass And Miscanthus RhizosphereVTEVPDEAWESDDRVRRTMVMPAGLAERLAARAEQRGLSVSDLL
Ga0070711_10002053713300005439Corn, Switchgrass And Miscanthus RhizosphereLTEVPDEAWESDDCVHRTMVMPAALAERLATRAEQRGLSVS
Ga0068855_10196957923300005563Corn RhizosphereVSEVPDEAWESDDFVRRTVVIPAVLAERLAARAEQ
Ga0070762_1065715213300005602SoilMSETPGEVWECDDCVRRTVVLPTELAERLAAQAQHRGLSVSDLLA
Ga0070764_1031473523300005712SoilVSEVPDEVWESDDRVRRTIVLPTRLAERLAARAEQRGLS
Ga0066903_10108594923300005764Tropical Forest SoilLSESPAEAWESDDSVRRTVVLPTVLAERLAARAEQRGL
Ga0068851_1029392123300005834Corn RhizosphereLSETPEDVWESDDCVRRTVVLPIELAERLAAEAERRGLSVSD
Ga0068860_10157920523300005843Switchgrass RhizosphereLSETPEDVWESDDCVRRTVVLPTELAERLAAEAERR
Ga0070766_1083813013300005921SoilMSETPGEVWECDDCVRRTVVLPTELAERLAAQAQHRGLSVSD
Ga0070712_10161216913300006175Corn, Switchgrass And Miscanthus RhizosphereLSEVPDEVWERDDCVRRSVILPTELAERLAAEAERRGLSVSDL
Ga0070712_10163875723300006175Corn, Switchgrass And Miscanthus RhizosphereLSETPDEVWESDDCVHRTVVLPTELAERLAAEAERRGLSI
Ga0070765_10058118213300006176SoilVSEVPDEAWESDDFVRRTMVMPALLAERLAARAEQRG
Ga0074054_1167675113300006579SoilLSETPGEVWESDDCVRRTVVMPAVLAERLAAQAEQRDLSVSDLLA
Ga0079221_1149951213300006804Agricultural SoilLSETPDDVWESDDCVRRTVVLPTELAERLAAEAELRGLSISDLLIE*
Ga0073928_1015266113300006893Iron-Sulfur Acid SpringVSEVPDEVWESDDRVRRMLVLPAALAERLAARAEQRG
Ga0075419_1060175413300006969Populus RhizosphereLSETPDDVWESDDCVRRTVVIPTELAERLAAEAERRG
Ga0099794_1034573613300007265Vadose Zone SoilVSETPGDVWESDDCVRRTVVMPIVLAERLAVQAERRGLS
Ga0105245_1016877613300009098Miscanthus RhizosphereLSETPDEAWESDDCVRRTVVLPTELAERLAAEAEKRGISISDL
Ga0075423_1077853423300009162Populus RhizosphereLSETPDDVWESDDCVRRTVVLPTELAERLAAEAERRG
Ga0116221_102744343300009523Peatlands SoilVSELPDEVWESDDCVRRTVVLPAVLTERLAARAEQRGLSFSDLLVEY
Ga0116216_1061689813300009698Peatlands SoilVSETPEQAWECDDCVRRTVVLPTELAERLAAQAQRRGLSFSDLLTEY
Ga0134125_1068396513300010371Terrestrial SoilLSETPEDVWESDDCVRRTVVLPIELAERLAAEAAR
Ga0136449_10315398223300010379Peatlands SoilVSEVPDEAWESDDCVRRTIVLPAVLAERLADRAERRGLSVSDLLA
Ga0124844_123877013300010868Tropical Forest SoilVSVSEEADLVWERDDWVRRTVVLPVAMAERLAAVA
Ga0137380_1027815713300012206Vadose Zone SoilVSETPDEVWERDDCVRRTIVLPTEFAERLAAEAERR
Ga0137372_1093127113300012350Vadose Zone SoilVPDEAWESDDCVRRTVVMPAVLAERLAARAEQRGLSISD
Ga0137384_1074714413300012357Vadose Zone SoilVTEVPDEAWESDDCVRRTVVMPAGLAERLAARAEQRGLS
Ga0137384_1089895923300012357Vadose Zone SoilVTEVPDEAWESDDCVRRTVVMPTVLAERLAARAEQRGLSISDLL
Ga0137368_1085914813300012358Vadose Zone SoilVPDEAWESDDCVRRTVVMPAGLAERLAARAEQRGLSVSDLLTEY
Ga0137385_1139364123300012359Vadose Zone SoilLSETPGEIWESDDCVRRTVVLPTVLAERLAAQAERRGLSVSDLL
Ga0157340_101817223300012473Arabidopsis RhizosphereVPDEAWESDDRVRRTMVMPAGLAERLAARAEQRGL
Ga0157354_103238613300012517Unplanted SoilVPDEAWESDDCVRRTVVMPAVLAERLAARAEQRGLSVS
Ga0137395_1109045313300012917Vadose Zone SoilMSETPGEAWESDDYVLRTVVMPAALAEQLAAIADQ
Ga0164298_1035149013300012955SoilVSETSDEVWESDDCVRRTIVIPAELAERLAAEADRRGLSVSDLLS
Ga0157378_1087396123300013297Miscanthus RhizosphereLSETPDEVWERDDCVRRTVVLPTELAERLAMEAERRGLSVSDLLIEY
Ga0157375_1066476113300013308Miscanthus RhizosphereLSETPDEAWESDDCVRRTVVLPTELAERLAAEAEKRGLSISDLL
Ga0120125_102806113300014056PermafrostMSNPPDEVWESDDCVRRTVVMPIVLAEHLAARAERRGLSVSDLLAE
Ga0173478_1024602113300015201SoilVSETSDETWERDDCVRRTVVLPTELAERLAAEAERRG
Ga0182041_1006512913300016294SoilLSEVPDEAWESDDCVRRTVVMPAALAERLAARAEQ
Ga0182034_1114683123300016371SoilVTEVPDEAWESDDCVRRTVVMPAVLAERLAARAEQRGLSVSDLLAEY
Ga0182037_1130176723300016404SoilVSETPSEAWEGDDSVRRTVVMPAALAERLAAEAERRELSVS
Ga0187812_121897523300017821Freshwater SedimentVSEVPDEVWESDDCVRRTVVLPAPLAERLAARAEQR
Ga0187807_111355823300017926Freshwater SedimentVSELPDEAWESDDCVRRTVVLPTVLTERLAARAETAWSFVQ
Ga0187823_1020428913300017993Freshwater SedimentVTEVPDEAWESDDCVRRTMVMPAGLAERLAARAEQRGLSVSDLL
Ga0187816_1038871623300017995Freshwater SedimentVSEDEVWESDDCVRRTVVLPTVLTERLAARAETAWSFVQ
Ga0187862_1059479823300018040PeatlandVSETPGEAWECDDCVRRTVVLPTELAERLAAQAQRRGLSFSDLLTEY
Ga0184625_1066782813300018081Groundwater SedimentVSETPDEGWERDDCIRRTIVLPTELAERLAAEAERRGL
Ga0187772_1018341013300018085Tropical PeatlandVSEGPDEVWESDDCVRRTIVLPAVLAERLAGRAERRGLSVSDLLA
Ga0193751_115614623300019888SoilMSNPPDEVWESDDCVRRTVVMPIVLAEQLAAEAERRGLSVSDLLA
Ga0193726_127001213300020021SoilVSDIPDQAWETDDCVRRTVVLPIPLAERLAARAEQRGL
Ga0179594_1020583023300020170Vadose Zone SoilLSETTDDVWDSDDCVRRTVVIPTELAERLAAEAERRGLSVSDLLI
Ga0210395_1030773623300020582SoilVSEVPDEVWESDDAVRRTLVLPARLAERLAARAEQRGLSFSDLLVEY
Ga0210381_1018719723300021078Groundwater SedimentLSETPEDVWESDDCVRRTVVLPTELAERLAAEAQR
Ga0210408_1044939413300021178SoilMRGRQLTEVPDEAWESDDCVYRTMVMPAALAERLATRAEQRGLSV
Ga0210388_1037570313300021181SoilVSELPDDVWESDDCVRRTVVIPARLAERVAARAEQRGLSF
Ga0193719_1011279023300021344SoilLSETPDEVWESDELVRRTIVIPRELAERLAAEAERR
Ga0210393_1064743413300021401SoilVSEVPDEVWESDDCVRRTLVLPARLAERLAARAEQRGLSFSDLLVEY
Ga0210386_1026958213300021406SoilVAEPPGEVWESDDYVRRTVVMPVVLFARLAASAERRGVSINDL
Ga0210386_1069965223300021406SoilVSELPEDVWESDDCVRRMLVLPARLAERLAAQAEQRGL
Ga0210384_1143830323300021432SoilVAEPPGEVWESDDYVRRTVVMPVVLFARLAASAERRGVSISDLLVEF
Ga0210384_1181762223300021432SoilMRGRQLTEVPDEAWESDDCVYRTMVMPAALAERLATRAEQRGLSVSELLTE
Ga0182009_1072136123300021445SoilVTEVPDEAWESDDCVRRTVVMPAGLAERLAARAEQRGLSVSDLL
Ga0210392_1044154323300021475SoilVTEVPDEAWESDDRVRRTMVMPAGLAERLAARAEQRGLSVSD
Ga0210409_1046571923300021559SoilVSEVPDEVWESDDCVRRTLVLPTRLAERLAARAEQRGLSFSDL
Ga0242644_102472833300022498SoilEVPDEVWESDDCVRRMLVLPARLAERLAARAEQRGL
Ga0222756_100989413300022709SoilVSEVPDEVWESDDCVRRMLVLPARLAERLAAQAEQRGLSFSDLLV
Ga0242665_1030863613300022724SoilVTEVPDEAWESDDCVRRTVVMPAVLAERLAARAEQRG
Ga0222622_1105905813300022756Groundwater SedimentVSETTGEVWESDDCVRRTVVMPIALAERLAARAEQRDLSVSDL
Ga0247795_100114273300022899SoilVSETSDETWERDDCVRRTVVLPTELAERLAAEAERRGLSVSDLL
Ga0247692_101421113300024279SoilLSETPDDVWESDDCVRRTVVLPTELAERLAAEAELR
Ga0207645_1041338313300025907Miscanthus RhizosphereLSETPEDVWESDDCVRRTVVLPTELAERLAAEAERRGLS
Ga0207654_1127866623300025911Corn RhizosphereLSETPDEAWESDDCVRRTVVFPTELAERLAAEAEK
Ga0207646_1004692063300025922Corn, Switchgrass And Miscanthus RhizosphereLSESPPEAWESDDSVRRTVVMPTVLAERLAARAEQRGLSVSDL
Ga0207687_1136311113300025927Miscanthus RhizosphereLSETPDEAWESDDCVRRTVVLPTELAERLAAEAEKRGL
Ga0207687_1187464113300025927Miscanthus RhizosphereLSETPEDVWESDDCVRRTVVLPTELAERLAAEAERRGLSVS
Ga0207709_1001520753300025935Miscanthus RhizosphereLSETPEDVWESDDCVRRTVVLPIELAERLAAEAERRGLSVSDLLIEY
Ga0207665_1100494223300025939Corn, Switchgrass And Miscanthus RhizosphereLSETPEDVWESDDCVRRTVVLPTELAERLAAEAERRGLSVSDLL
Ga0257150_104315823300026356SoilVSEVPDEVWESDDCVRRTLVLPARLAERLAARAEQRGLSFSDLLV
Ga0257146_102132023300026374SoilVPDEAWESDDCVHRTVVMPAVLAERLAARADQRGLSISDLLTEY
Ga0179587_1080277113300026557Vadose Zone SoilVSEPAYEAWEHDDYVHRSVVLPAALAERLAAEAERR
Ga0208097_100825013300027173Forest SoilVSEVPDEVWESDDRVRRTIVLPTRLAERLAARAEQRGLSFSDLL
Ga0209073_1009479823300027765Agricultural SoilLSETSDEVWERDDCVRRTVVLPTELADRLAAEAER
Ga0209693_1041425913300027855SoilVSEDEVWESDDCVRRTVVLPTLLAERIAAQAEQRGLSFSDLL
Ga0209169_1053162523300027879SoilVSEVPDEVWESDDRVRRTIVLPTRLAERLAARAEQ
Ga0209590_1032094833300027882Vadose Zone SoilLPETPGEVWESDDCVRRTIVLPTAVAERLAVQAGRRGLSVSDLLA
Ga0209590_1038752823300027882Vadose Zone SoilVSELPGEVWESDDSVCRTVVMAAELAERLAVQAERRG
Ga0209488_1089115723300027903Vadose Zone SoilVSETYDEVWESDDCVRRTIVIPIELAERLAAEADRRGVSVSDLLSEY
Ga0268266_1202814123300028379Switchgrass RhizosphereLSETPEDVWESDDCVRRTVVLPIELAERLAAEAERRG
Ga0307295_1018579223300028708SoilLSETPEDVWESDDCVRRTVVLPTELAERLAAEAQRRGLSVSDLLIEY
Ga0307293_1013482923300028711SoilVSETTGEVWESDDCVRRTVVMPIALAERLAARAEQRDLSVS
Ga0307301_1029227723300028719SoilVTEVPDEAWESDDCVRRTMVMPAVLAERLAARAEQ
Ga0302234_1023105623300028773PalsaLSATPEEVWEEDDCVRRTVVIPVMLAERLAAQADRRRLSVSDLL
Ga0302232_1041548413300028789PalsaMSEVPGEVWESDDWVRRTLVLPALLAERLAARAEQR
Ga0247824_1095449323300028809SoilLSETPDEVWERDDCVRRTVVLPTELAERLATEAERRGLSVSDLLIE
Ga0307296_1029008213300028819SoilLSETPDEVWESDELVRRTIAIPRRLAERLAAEAERRDLGINDLIV
Ga0316363_1033353713300030659Peatlands SoilVSELPDEAWESDDCVRRTVVLPAVLTERLAARAERRGLSFSD
Ga0307498_1005299223300031170SoilVTEVPDEAWESDDCVRRTMVMPTVLAERLAARAEQRGLSVSD
Ga0170824_10174986413300031231Forest SoilLSETPDEVWESDDCVRRTVVLPTELAERLAAEAEKH
Ga0302325_1141445813300031234PalsaMSEVPGEVWESDDWVRRTLVLPALLAERLAARAEQRGLSFSDLLVE
Ga0318516_1016289513300031543SoilMSEVPDDVWESDDWVRRTIVLPAALAERLADRAERRGLSVSDLLAEY
Ga0318534_1061802923300031544SoilVSETPGEAWESDDCVRRTVVIRAVLAEQLAATAERRGLSVSDLLAE
Ga0310887_1037718823300031547SoilLSETPDDVWESDDCVRRTVVLPTELAERLAAEAELRGL
Ga0318571_1027923313300031549SoilVSEVPDEAWESDDCVRRMVVMPVALAERLAARAEQRGLSVSDLLAEY
Ga0318542_1018877313300031668SoilMSGVPDDVWESDDCVRRTIVLPAVLAERLADRAGQRGLSV
Ga0318572_1073889023300031681SoilVSEVPDEAWESDDCVRRTIVLPAVLAERLAGRAEQRGVSVSDL
Ga0310813_1160270423300031716SoilLSETPEDVWESDDCVRRTVVLPTELAERLAAEAQRR
Ga0306917_1009943313300031719SoilMSEVPDDVWESDDWVRRTIVLPAALAERLADRAERRGLSVSDLLAE
Ga0318501_1063346113300031736SoilVSEDEVWESDDCVRRTVVLPALLAERLAARAEQRG
Ga0318546_1003992053300031771SoilVSETPTEAWESDDSVRRTVVMPTELAERLAAEAER
Ga0318503_1017457213300031794SoilVTEVPDEAWESDDCVRRTVVMPAVLAERLAARAEQRGLSVSDLLTEY
Ga0318564_1008061813300031831SoilVTEVPDEAWESDDCVRRTVVMPAVLAERLAARAEQRGLSVSDL
Ga0318499_1022674623300031832SoilMSGVPDDVWESDDCVRRTIVLPAVLAERLADRAGQRGLS
Ga0310917_1019626023300031833SoilMSGVPDDVWESDDCVRRTIVLPAVLAERLADRAGQ
Ga0310904_1044240423300031854SoilLSETPEEVWESDDCVRRTVVLPTELAERLAAEAERRGLSVSDLLIEY
Ga0318495_1028976313300031860SoilMSEVPDDVWESDDWVRRTIVLPAALAERLADRAERR
Ga0306926_1179831823300031954SoilLSETPGEAWESDDCVRRTVVMPAALAERLAATAERRGLSVGDLLA
Ga0307479_1135352623300031962Hardwood Forest SoilVSENPDLVWESDDCVRRTVIMQAALAERLAAEAERR
Ga0306922_1065741613300032001SoilVTEVPDEAWESDDCVRRTVVMPAVLAERLAARAEQRGLS
Ga0318569_1004727933300032010SoilVTEVPDEAWESDDCVRRTVVMPAVLAERLAARAEQRGLSVSDLLT
Ga0335075_1107566113300032896SoilVSEVPDEAWESDDCVRRTVVLPALLAERLAARAEQRGLSFSDLLVE

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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