Metagenome / Metatranscriptome Family F060226

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F060226
Family Type	Metagenome / Metatranscriptome
Number of Sequences	133
Average Sequence Length	52 residues
Representative Sequence	MQDKKKKTKKAVKVGDLKPAKDPKGGGMPQGFPQDLKSLLKHLQLGQGPGR
Number of Associated Samples	100
Number of Associated Scaffolds	133

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	61.83 %
% of genes near scaffold ends (potentially truncated)	37.59 %
% of genes from short scaffolds (< 2000 bps)	85.71 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.25

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (62.406 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (25.564 % of family members)
Environment Ontology (ENVO)	Unclassified (28.571 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (36.090 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 16.46% β-sheet: 0.00% Coil/Unstructured: 83.54%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.25
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.25
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 133 Family Scaffolds
PF14534	DUF4440	3.01
PF13302	Acetyltransf_3	2.26
PF00076	RRM_1	2.26
PF00903	Glyoxalase	1.50
PF13884	Peptidase_S74	1.50
PF00085	Thioredoxin	1.50
PF04055	Radical_SAM	0.75
PF01569	PAP2	0.75
PF12680	SnoaL_2	0.75
PF13579	Glyco_trans_4_4	0.75
PF13430	DUF4112	0.75
PF06123	CreD	0.75
PF01435	Peptidase_M48	0.75
PF14349	SprA_N	0.75
PF00313	CSD	0.75
PF14023	DUF4239	0.75
PF12681	Glyoxalase_2	0.75
PF03453	MoeA_N	0.75
PF08447	PAS_3	0.75
PF01513	NAD_kinase	0.75
PF09954	DUF2188	0.75

COG ID	Name	Functional Category	% Frequency in 133 Family Scaffolds
COG0303	Molybdopterin Mo-transferase (molybdopterin biosynthesis)	Coenzyme transport and metabolism [H]	0.75
COG4452	Inner membrane protein CreD involved in colicin E2 resistance	Defense mechanisms [V]	0.75

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.41 %
Unclassified	root	N/A	37.59 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.41 %
Unclassified	root	N/A	37.59 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.41 %
Unclassified	root	N/A	37.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.59 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	27.07 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.75 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.59 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	27.07 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.75 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.59 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	18.80 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	3.76 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.75 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.59 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	18.80 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	3.76 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.75 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.59 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	18.80 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	3.76 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.75 %
Collimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Collimonas	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.59 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	18.80 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	3.01 %
unclassified Collimonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Collimonas → unclassified Collimonas	0.75 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.59 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	18.80 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	3.01 %
Collimonas sp. OK412	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Collimonas → unclassified Collimonas → Collimonas sp. OK412	0.75 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.75 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918007\|ConsensusfromContig20176	Not Available	840	Open in IMG/M
2162886013\|SwBSRL2_contig_5550245	All Organisms → cellular organisms → Bacteria	931	Open in IMG/M
2170459005\|F1BAP7Q01A5Z9U	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	534	Open in IMG/M
2170459005\|F1BAP7Q01AGC74	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100254132	Not Available	518	Open in IMG/M
3300000891\|JGI10214J12806_10738550	Not Available	533	Open in IMG/M
3300002908\|JGI25382J43887_10378192	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300002908\|JGI25382J43887_10432445	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300002914\|JGI25617J43924_10164329	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	752	Open in IMG/M
3300004114\|Ga0062593_101086058	Not Available	829	Open in IMG/M
3300004157\|Ga0062590_101098858	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	766	Open in IMG/M
3300004157\|Ga0062590_101598797	Not Available	659	Open in IMG/M
3300004157\|Ga0062590_102429618	Not Available	554	Open in IMG/M
3300004157\|Ga0062590_102905780	Not Available	513	Open in IMG/M
3300004479\|Ga0062595_100915753	Not Available	741	Open in IMG/M
3300004479\|Ga0062595_101859255	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300005093\|Ga0062594_101171666	Not Available	759	Open in IMG/M
3300005172\|Ga0066683_10016739	All Organisms → cellular organisms → Bacteria	4016	Open in IMG/M
3300005293\|Ga0065715_10236661	All Organisms → cellular organisms → Bacteria	1214	Open in IMG/M
3300005294\|Ga0065705_10148946	All Organisms → cellular organisms → Bacteria	1983	Open in IMG/M
3300005294\|Ga0065705_10341967	All Organisms → cellular organisms → Bacteria	971	Open in IMG/M
3300005329\|Ga0070683_100457785	Not Available	1217	Open in IMG/M
3300005365\|Ga0070688_100180247	All Organisms → cellular organisms → Bacteria	1465	Open in IMG/M
3300005436\|Ga0070713_100445158	All Organisms → cellular organisms → Bacteria	1216	Open in IMG/M
3300005439\|Ga0070711_101622934	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	566	Open in IMG/M
3300005457\|Ga0070662_100677106	Not Available	871	Open in IMG/M
3300005467\|Ga0070706_102062430	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300005574\|Ga0066694_10325612	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	730	Open in IMG/M
3300005577\|Ga0068857_100817453	Not Available	890	Open in IMG/M
3300006175\|Ga0070712_100152009	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1778	Open in IMG/M
3300006175\|Ga0070712_100313028	Not Available	1274	Open in IMG/M
3300006175\|Ga0070712_100458510	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1062	Open in IMG/M
3300006175\|Ga0070712_100825145	Not Available	797	Open in IMG/M
3300006796\|Ga0066665_11675321	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300009012\|Ga0066710_100860907	All Organisms → cellular organisms → Bacteria	1393	Open in IMG/M
3300009012\|Ga0066710_103808263	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300009012\|Ga0066710_104542129	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300009137\|Ga0066709_102102624	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	780	Open in IMG/M
3300010323\|Ga0134086_10059395	All Organisms → cellular organisms → Bacteria	1308	Open in IMG/M
3300010323\|Ga0134086_10476663	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300010333\|Ga0134080_10023672	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2298	Open in IMG/M
3300010375\|Ga0105239_12476169	Not Available	605	Open in IMG/M
3300011119\|Ga0105246_12060966	Not Available	552	Open in IMG/M
3300011332\|Ga0126317_10692404	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	557	Open in IMG/M
3300012207\|Ga0137381_11451525	Not Available	578	Open in IMG/M
3300012353\|Ga0137367_11140300	Not Available	524	Open in IMG/M
3300012354\|Ga0137366_10099986	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2199	Open in IMG/M
3300012354\|Ga0137366_10821074	Not Available	659	Open in IMG/M
3300012683\|Ga0137398_10714684	Not Available	697	Open in IMG/M
3300012685\|Ga0137397_10121652	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1922	Open in IMG/M
3300012885\|Ga0157287_1037791	Not Available	714	Open in IMG/M
3300012892\|Ga0157294_10048652	All Organisms → cellular organisms → Bacteria	955	Open in IMG/M
3300012906\|Ga0157295_10082927	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	843	Open in IMG/M
3300012930\|Ga0137407_12382915	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300012951\|Ga0164300_10267049	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Collimonas → unclassified Collimonas → Collimonas sp. OK412	878	Open in IMG/M
3300012955\|Ga0164298_10878532	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300012957\|Ga0164303_10000383	All Organisms → cellular organisms → Bacteria	10029	Open in IMG/M
3300012957\|Ga0164303_10522006	Not Available	765	Open in IMG/M
3300012957\|Ga0164303_11154637	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	563	Open in IMG/M
3300012958\|Ga0164299_10242327	All Organisms → cellular organisms → Bacteria	1072	Open in IMG/M
3300012960\|Ga0164301_10011830	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	3567	Open in IMG/M
3300012984\|Ga0164309_11481456	Not Available	580	Open in IMG/M
3300012986\|Ga0164304_11681830	Not Available	530	Open in IMG/M
3300013297\|Ga0157378_12385204	Not Available	581	Open in IMG/M
3300013306\|Ga0163162_12327574	Not Available	616	Open in IMG/M
3300013308\|Ga0157375_12652200	Not Available	599	Open in IMG/M
3300015242\|Ga0137412_10041014	All Organisms → cellular organisms → Bacteria	3780	Open in IMG/M
3300015371\|Ga0132258_10573642	All Organisms → cellular organisms → Bacteria	2830	Open in IMG/M
3300015371\|Ga0132258_12513045	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1288	Open in IMG/M
3300015372\|Ga0132256_101468272	Not Available	793	Open in IMG/M
3300015373\|Ga0132257_102927551	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	622	Open in IMG/M
3300015374\|Ga0132255_100540974	Not Available	1716	Open in IMG/M
3300015374\|Ga0132255_102257239	All Organisms → cellular organisms → Bacteria	830	Open in IMG/M
3300015374\|Ga0132255_102685524	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	761	Open in IMG/M
3300015374\|Ga0132255_102807752	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	745	Open in IMG/M
3300018028\|Ga0184608_10211893	Not Available	850	Open in IMG/M
3300018075\|Ga0184632_10073410	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1490	Open in IMG/M
3300018076\|Ga0184609_10467318	Not Available	578	Open in IMG/M
3300018431\|Ga0066655_10760210	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300019361\|Ga0173482_10016135	All Organisms → cellular organisms → Bacteria	2035	Open in IMG/M
3300019866\|Ga0193756_1004420	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1658	Open in IMG/M
3300019868\|Ga0193720_1061313	Not Available	520	Open in IMG/M
3300019869\|Ga0193705_1022279	All Organisms → cellular organisms → Bacteria	1378	Open in IMG/M
3300019874\|Ga0193744_1095113	Not Available	556	Open in IMG/M
3300019877\|Ga0193722_1004120	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	3588	Open in IMG/M
3300019878\|Ga0193715_1021436	All Organisms → cellular organisms → Bacteria	1403	Open in IMG/M
3300019879\|Ga0193723_1059803	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1110	Open in IMG/M
3300019883\|Ga0193725_1006812	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	3291	Open in IMG/M
3300020000\|Ga0193692_1037303	All Organisms → cellular organisms → Bacteria	1125	Open in IMG/M
3300020000\|Ga0193692_1045495	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1002	Open in IMG/M
3300020006\|Ga0193735_1001124	All Organisms → cellular organisms → Bacteria	8562	Open in IMG/M
3300020006\|Ga0193735_1005143	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	4198	Open in IMG/M
3300020006\|Ga0193735_1186550	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300020010\|Ga0193749_1014010	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1569	Open in IMG/M
3300020012\|Ga0193732_1082558	Not Available	520	Open in IMG/M
3300021078\|Ga0210381_10312262	Not Available	569	Open in IMG/M
3300021080\|Ga0210382_10245004	Not Available	784	Open in IMG/M
3300021080\|Ga0210382_10393391	Not Available	613	Open in IMG/M
3300021344\|Ga0193719_10345750	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300021411\|Ga0193709_1001111	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	8214	Open in IMG/M
3300021415\|Ga0193694_1001734	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	3114	Open in IMG/M
3300022737\|Ga0247747_1054095	Not Available	509	Open in IMG/M
3300023058\|Ga0193714_1000517	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6296	Open in IMG/M
3300025915\|Ga0207693_10734392	Not Available	763	Open in IMG/M
3300025915\|Ga0207693_10748356	Not Available	755	Open in IMG/M
3300025930\|Ga0207701_10191262	All Organisms → cellular organisms → Bacteria	1802	Open in IMG/M
3300025930\|Ga0207701_10243611	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1570	Open in IMG/M
3300025933\|Ga0207706_10325227	All Organisms → cellular organisms → Bacteria	1338	Open in IMG/M
3300026323\|Ga0209472_1027588	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2629	Open in IMG/M
3300026536\|Ga0209058_1305210	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300026540\|Ga0209376_1372809	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300028718\|Ga0307307_10304469	Not Available	514	Open in IMG/M
3300028885\|Ga0307304_10607755	Not Available	507	Open in IMG/M
3300030916\|Ga0075386_10036015	Not Available	1298	Open in IMG/M
3300030972\|Ga0075400_10006905	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300031057\|Ga0170834_103299119	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	532	Open in IMG/M
3300031231\|Ga0170824_102847749	Not Available	540	Open in IMG/M
3300031231\|Ga0170824_105694237	Not Available	654	Open in IMG/M
3300031231\|Ga0170824_107971174	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300031231\|Ga0170824_111788443	Not Available	670	Open in IMG/M
3300031231\|Ga0170824_113516744	All Organisms → cellular organisms → Bacteria	1638	Open in IMG/M
3300031446\|Ga0170820_10056268	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300031446\|Ga0170820_13414713	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	537	Open in IMG/M
3300031446\|Ga0170820_13600387	All Organisms → cellular organisms → Bacteria	988	Open in IMG/M
3300031446\|Ga0170820_16580670	Not Available	647	Open in IMG/M
3300031474\|Ga0170818_113324887	All Organisms → cellular organisms → Bacteria	1150	Open in IMG/M
3300031720\|Ga0307469_11240814	Not Available	706	Open in IMG/M
3300031740\|Ga0307468_100871336	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	777	Open in IMG/M
3300031943\|Ga0310885_10666221	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300032180\|Ga0307471_100191420	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2033	Open in IMG/M
3300032205\|Ga0307472_100244248	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1403	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.47%
Host-Associated	Host-Associated	13.53%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.20%
Plants	Host-Associated → Plants	13.53%
Aquatic	Environmental → Aquatic	5.26%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.20%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.27%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.26%
Freshwater	Environmental → Aquatic → Freshwater	3.01%
Sediment	Environmental → Aquatic → Sediment	2.26%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	72.93%
Loam	Environmental → Terrestrial → Soil → Loam	8.27%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.01%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.26%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.26%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.50%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.09%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	15.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.27%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.01%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.50%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.75%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.75%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	25.56%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	8.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.77%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.02%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	6.02%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.02%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.26%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.01%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.26%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.26%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.26%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	2.26%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.50%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.50%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.50%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.50%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.75%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.75%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.75%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.75%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918007	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active_all	Environmental	Open in IMG/M
2162886013	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012885	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1	Environmental	Open in IMG/M
3300012892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1	Environmental	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019866	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1m1	Environmental	Open in IMG/M
3300019868	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s1	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300019874	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1a1	Environmental	Open in IMG/M
3300019877	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1	Environmental	Open in IMG/M
3300019878	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m2	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300019883	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2	Environmental	Open in IMG/M
3300020000	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a1	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300020010	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1s2	Environmental	Open in IMG/M
3300020012	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s1	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021411	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2	Environmental	Open in IMG/M
3300021415	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s1	Environmental	Open in IMG/M
3300022737	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S094-311B-5	Environmental	Open in IMG/M
3300023058	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m1	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300030916	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030972	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB4 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
A_all_C_00298240	2140918007	Soil	MQDKKKKTKKAVKVGDLKPAKDPKGGGMPQGSPQDLKSLLKLLQLGQGPGR
SwBSRL2_0342.00004270	2162886013	Switchgrass Rhizosphere	VRRKKKKTKERVKVDDLKPAKDPKGGMPQGPSENVEWILKHLQLGERPPGSTPR
E41_04032210	2170459005	Grass Soil	MTRSGTVASKGQVTNVQDKKKKTKKAVKVGDLKPAKDPKGGGMPQGFPPDLKSLLKHLQL
E41_02955300	2170459005	Grass Soil	MEDKKKKTKKGVKVDDLKPAKDPKGGGMPQGSLQDIKSLLKHLQLAQGPGR
INPhiseqgaiiFebDRAFT_1002541322	3300000364	Soil	MPGKQKKTKKRVKIDDLKPAKDPKGGTSRGPTRDLEWLLRHLQLGQEPGHRDSKPK*
JGI10214J12806_107385501	3300000891	Soil	MPGKKKRTRKRIKVDDLNPAKDPKGGMTRGPPHDLKWLLKHLQLGQEPSQTDSKPKSGS*
JGI10216J12902_1019979501	3300000956	Soil	MQGEKKRTKKQVKIHDLTPAKNPKGGMLQGPPQDLNWLLKHLQVGLGLGGGGKTGPNSPL
JGI25382J43887_103781922	3300002908	Grasslands Soil	MQDKKKKTKKAVKVGDLKPAKDPKGGGMPQGFPQDLKSLLRHLQLGQGPGR*
JGI25382J43887_104324451	3300002908	Grasslands Soil	MQDKKKKTKKAVKVGDLKPAKDPKGGGMPQGFPQDLKSLLRHLELGQGPGR*
JGI25617J43924_101643293	3300002914	Grasslands Soil	QDKKKKTKKVLKVDDLEPAKDPKGGGMPQGFPQDVKSLLKHLQLGQGPGR*
Ga0062593_1010860581	3300004114	Soil	MQGKKKKTKKRIKVDDLKPAKDPKGGTTRGPPHDLKWLLKHLQLGQEPSQTDSKPK
Ga0062590_1010988582	3300004157	Soil	MQDKKEKTKKAVKVYDLKPAKDPKGGGMPQGSPQGLKSLLRHLQLGQRPGR*
Ga0062590_1015987971	3300004157	Soil	MQGKKKKTKKRIKVDDLKPAKDPKGGTTRGPARDLKWLLKHLQLG
Ga0062590_1024296182	3300004157	Soil	MPGKQKKTKKRVKIDDLKPAKDPKGGASRGAPRDLEWLLRHLQLGQEPGHRDSKPK*
Ga0062590_1029057801	3300004157	Soil	MPGKKKKTKKRIKVADLRPAKDPKGGMTRGPPHDLKWLLKHLQLGQEPSQPDTNPKSAS*
Ga0062595_1009157531	3300004479	Soil	MPGKKKRTRKRIKVDDLNPAKDPKGGMTRGPPHDLKWLLKHLQLGQEPSQADSKPKSGS*
Ga0062595_1018592552	3300004479	Soil	TKKVVKVYDLKPAKDPKGGGLPRGSPQDLKSLLRHLQLGQSPAGSGKIEAS*
Ga0062594_1011716661	3300005093	Soil	MPGKKKKTKKRIKVADLRPAKDPKGGMTRGPPHDLKWLLKHLQLGQEPSQTDTKPKSAS*
Ga0066683_100167394	3300005172	Soil	MRGKQKKTKKRVKVDDLKPAKDPKGGMPQGPPQDLKWLLKHLQLGQRRPGGGR*
Ga0065704_101769923	3300005289	Switchgrass Rhizosphere	VVKVYDLKPAKDPKGGGLPRGSPQDLKSLLRHLQLGQSPAGSGKIEAS*
Ga0065715_102366612	3300005293	Miscanthus Rhizosphere	MSGKKNKPKKRIKVDDLNPAKDPKGGMTRGPPHDLKWLLKHLQLGQEPSQTDSKSKPHS*
Ga0065705_101489462	3300005294	Switchgrass Rhizosphere	VRRKKKKTKERVKVDDLKPAKDPKGGMPQGPSENVEWILKHLQLGERPPGSTPR*
Ga0065705_103419672	3300005294	Switchgrass Rhizosphere	MQDKKKKTKKVVKVYDLKPAKDPKGGGLPRGSPQDLKSLLRHLQLGQSPAGSGKIEAS*
Ga0070683_1004577853	3300005329	Corn Rhizosphere	VRRKKKKTTKMVKVDDLKPAKDPKGGMPQGPSENVEWILKHLQLGERPPGSTPR*
Ga0070688_1001802471	3300005365	Switchgrass Rhizosphere	MSGKKNKPKKRIKVDDLNPAKDPKGGMTRGPPHDLKWLLKHLQLGQEPSQ
Ga0070713_1004451582	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MQEKKKKTKKAVKVGDLKPAKDPKGGGMPQGFPQDVKSLLKHLQLGQGPGR*
Ga0070711_1016229342	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	KTKKGVKVDDLKPAKDPKGGGMPQGFPPDLKSLLKHLQLGQGPGR*
Ga0070662_1006771061	3300005457	Corn Rhizosphere	MSGKKNKPKKRIKVDDLNPAKDPKGGMTRGPPHDLKWLLKHLQLGQEPSQTDSKSKPHS*KISEKST
Ga0070706_1020624302	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	KGRVTNMQEKKKKTKKAVKVGDLKPAKDPKGGGMPQGFPQDLKSLLRHLQLGQGPGR*
Ga0066694_103256122	3300005574	Soil	MRGKQKKTKKRVKVDDLKPAKDPKGGMHQGPSENVKWILSHLQLGQRRPGGGR*
Ga0068857_1008174531	3300005577	Corn Rhizosphere	MQEKKKKTKKAVKVGDLKPAKDPKGGGMPQGFPQDVKSL
Ga0070712_1001520093	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MQEKKKKTKKAVKVGDLKPAKDPKGGGMPQGFPQDVKSLLKHLQLGQGP
Ga0070712_1003130281	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	KTKKAVKVGDLKPAKDPKGGGMPQGFPQDVKSLLKHLQLGQGPGR*
Ga0070712_1004585101	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MQDKKEKTKKGVKVDDLKPAKDPKGGGMPQGFPSDLKSLLKHLQLGQGPGR*
Ga0070712_1008251454	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	KTKKGVKVDDLKPAKDPKGGGMPQGSLQDIKSLLKHLQLAQGPGR*
Ga0066665_116753213	3300006796	Soil	DKKKKTKKAVKVGDLKPAKDPKGGGMPQGFPQDLKSLLRHLELGQGPGR*
Ga0066710_1008609071	3300009012	Grasslands Soil	DKKKKTKKAVKVGDLKPAKDPKGGGMPQGFPQDLKSLLRHLELGQGPGR
Ga0066710_1038082632	3300009012	Grasslands Soil	DKKKKTKKAVKVGDLKPAKDPKGGGMPQGFPQDLKSLLRHLQLGQGPGR
Ga0066710_1045421292	3300009012	Grasslands Soil	MQDKKKKTKKAVKVGDLKPAKDPKGGGMPQGFPQDLKSLLRHL
Ga0066709_1021026243	3300009137	Grasslands Soil	DKKKKTKKAVKVGDLKPAKDPKGGGMPQGFPQDLKSLLRHLQLGQGPGR*
Ga0134086_100593951	3300010323	Grasslands Soil	MRGKQKKTKKRVKVDDLKPAKDPKGGMPQGPSENVKWIL
Ga0134086_104766631	3300010323	Grasslands Soil	MQDKKKKTKKAVKVGDLKPAKDPKGGGMPQGFPQDLK
Ga0134080_100236725	3300010333	Grasslands Soil	MRGKQKKTKKRVKVDDLKPAKDPKGGMHQGPSENVKWILSHLQLGQRPPGGGR*
Ga0105239_124761691	3300010375	Corn Rhizosphere	MLGKKKRTRKRIKVDDLNPAKDPKGGMTRGPPHDLKWLLKHLQLGQEPSQADSKPKSGS*
Ga0105246_120609661	3300011119	Miscanthus Rhizosphere	MPGKKKKTKKRIKVDDLEPAKDPKGGMTRGPPHDLKWLLKHLQLGQGPGR*
Ga0126317_106924042	3300011332	Soil	MPGKKKKTKKRIKVDDLKPAKDPMGGMTRGPPHDLMWVLKHLQLGQDPSQTDPKPKSGS*
Ga0137381_114515251	3300012207	Vadose Zone Soil	MRGKKKKTKKGFKVDDLKPARDPKAGMPQSPARDLKWILKHLQLGQGPGGGGKTGPNSPL
Ga0137367_111403001	3300012353	Vadose Zone Soil	MQGKQKKTKKRVKVDDLKPAKDPKAGMPQGPPHDLKWLLKHLQLGQRPPGSTPR*
Ga0137366_100999862	3300012354	Vadose Zone Soil	MQDKKKRTKKDVKVDDLKPAKDPKGGMLKGPPQDLKWLWKHLQVGLGPSGGG*
Ga0137366_108210741	3300012354	Vadose Zone Soil	MRGKKKKTKKGFKVDDLKPARDPKGGMPQSPARDLKWILKHLQLGQGPGGGGKTGPNSPL
Ga0137398_107146841	3300012683	Vadose Zone Soil	MQDKKKKTKKVLKVDDLKPAKDPKGGGMPQGFPQDVKSLLKHLQLGQGPGR*
Ga0137397_101216523	3300012685	Vadose Zone Soil	MQDKKKKTKKVLKVDDLEPAKDPKGGGMPQGFPQDVKSLLKHLQLGQGPGR*
Ga0157287_10377911	3300012885	Soil	MPGKKKRTRKRIKVDDLNPAKDPKGGMTRGPPHDLKWLL
Ga0157294_100486521	3300012892	Soil	MPGKKKRTRKRIKVDDLNPAKDPKGGMTRGPPRDLKWLLKHLQLGQEPSQADSKPKSGS*
Ga0157295_100829272	3300012906	Soil	KTKKRIKVDDLKPAKDPKGGTTRGPPHDLKWLLKHLQLGQEPSQTDSKPKSGS*
Ga0137407_123829151	3300012930	Vadose Zone Soil	SKGQVTNMRGKKKKTKKGFKVDDLKPARDPKGGMPQGPARDLKWILKHLQLGQGR*
Ga0164300_102670491	3300012951	Soil	MPGKKKRTRKRIKVDDLNPAKDPKGGMTRGPPHDLKWLLKHLQLGQEP
Ga0164298_108785321	3300012955	Soil	MEDKKKKTKKGVKVDDLKPAKDPKGGGMPQGSLQDIKSLLKHLQLAQGPGK*
Ga0164303_1000038310	3300012957	Soil	MEDKKKKTKKGVKVDDLKPAKDPKGGGMPQGSLQDIKSLLKHLQLAQGPGR*
Ga0164303_105220061	3300012957	Soil	MQDKKKKTKKAVKVGDLKPAKDPKGGGMPQGSLQDIKSLLKHLQLGQGPGR*
Ga0164303_111546372	3300012957	Soil	VEDKKKKTRKAVKVGDLKPAKDPKGGGMPQDSPQDVKSLLKHLQLGLGSGR*
Ga0164299_102423273	3300012958	Soil	MQDKKKKTKKGVKVDDLKPAKDPKGGGMPQGSLQDIKSLLKHLQLAQGPGR*
Ga0164301_100118304	3300012960	Soil	MQDKKKKTKKGVKVDDLKPAKDPKGGGMPQGSLQDIKSLLKHLQLAQGPGK*
Ga0164309_114814562	3300012984	Soil	MQDKKKKTKKAVKVGDLKPAKDPKGGGMPQDSPQDVKSLLKHLQLGLGSGR*
Ga0164304_116818301	3300012986	Soil	MQDKKKKTKKAVKVGDLKPAKDPKGGGMPQGFPQDVKSLLKHLQLGRGPGR*
Ga0157378_123852042	3300013297	Miscanthus Rhizosphere	MPGKKKRTRKRIKVDDLNPAKDPKGGMTRGPPRDLKWLL
Ga0163162_123275741	3300013306	Switchgrass Rhizosphere	MPGKKKKTKKRIKVADLRPAKDPKGGMTRGPPHDLKWLLKHLQLGQEPSQTDTDENRPPEKF*
Ga0157375_126522001	3300013308	Miscanthus Rhizosphere	MQDKKKKTKKAVKVGDLKPAKDPKGGGMPQGSPQDVKSLL
Ga0137412_100410145	3300015242	Vadose Zone Soil	MEDKKKKTKKAVKVGDLKPAKDPKGGGMPQGSPQDVRSLLKLLQLGQGPGR*
Ga0132258_105736424	3300015371	Arabidopsis Rhizosphere	MQGKQKKTKKRVKVEDLKPAKDPKGGMTQGPPRDLKWLLKHLQLGQEPSQTDSKPKSAS*
Ga0132258_125130452	3300015371	Arabidopsis Rhizosphere	MPDKKRRTKKAVKVGDLKPAKDPKGGGMPRGSPQDLKSLLKHLQLGVRVPADRR*
Ga0132256_1014682721	3300015372	Arabidopsis Rhizosphere	RPWGDDILNMQDKKKKTKKGVKVDDLKPAKDPKGGMTRGPPHDLKWLLKHLQLGQEPSQTDSKPKSAS*
Ga0132257_1029275513	3300015373	Arabidopsis Rhizosphere	KKKTKKVVKVYDLKPAKDPKEGGMPQDLKSLLRHLQLGVRVPAGSGSP*
Ga0132255_1005409744	3300015374	Arabidopsis Rhizosphere	MPHKKRRTKKAVKVGDLKPAKDPKGGGMPQGSPQDLKSLLKHLQLGVRVPAD
Ga0132255_1022572392	3300015374	Arabidopsis Rhizosphere	MQDKKKKTKKVVKVYDLKPAKDPKGGGMPQGSPQDLKSLLRHLQLGQGPGR*
Ga0132255_1026855242	3300015374	Arabidopsis Rhizosphere	MQDKKKKTKKAVKVGDLKPAKDPKGGGIPQGFPQD
Ga0132255_1028077521	3300015374	Arabidopsis Rhizosphere	KGQVTNMPDKKRRTKKSVKVGDLKPAKDPKGGGMLQGSPQDLKSLLKHLQLGQGPGR*
Ga0184608_102118932	3300018028	Groundwater Sediment	VQDKKKKTKKAVKVGDLKPAKDPKGGGMPQGFPQDLKSLLKHLQLGQGPGR
Ga0184632_100734103	3300018075	Groundwater Sediment	MQDKKKKTQKAVKVGDLKPAKDPKGGGMPQGFPQDAKSLLKHLQLGQGPGR
Ga0184609_104673182	3300018076	Groundwater Sediment	MQDKKKKTKKAVKVGDLKPAKDPKGGGMPKGSPQDLKSLL
Ga0066655_107602101	3300018431	Grasslands Soil	MQDKKKKTKKAVKVGDLKPAKDPKGGGMPQGFPQDLKSLLRHLELGQGPGR
Ga0173482_100161354	3300019361	Soil	MPGKKKRTRKRIKVDDLNPAKDPKGGMTRGPPHDLKWLLKHLQLGQEPSQADSKPKSGS
Ga0193756_10044203	3300019866	Soil	MQDKKKKTNKAVKVYDLKPAKDPKEGGTPQDLKSLLRHLQLGVRVPAGSGSP
Ga0193720_10613131	3300019868	Soil	MPGKKKKTKKRIKVDDLKPAKDPKGGTTRGPPHDLKWLLKHLQLGQEPSQTDPKSKSDS
Ga0193705_10222793	3300019869	Soil	MQDKKKKTKKAVKVGDLKPAKDPKGGGMPQGFPQDVKSLLKHLQLGQGPGR
Ga0193744_10951131	3300019874	Soil	QRLANCKGRVTNMQDKKKKTKKAVKVGDLKPAKDPKGGGMPQGFPQDVKSLLKHLQLGQGPGR
Ga0193722_10041203	3300019877	Soil	MQDKKKKTKKAVKVGDLKPAKDPKGGGMPQGFPQDVKSLLKHLQLGRGPGR
Ga0193715_10214362	3300019878	Soil	MQDKKKKTKKAVKVGDLKPAKDPKGGGMPQGFPQDLKSLLKHLQLGQGPGR
Ga0193723_10598033	3300019879	Soil	VQDKKKKTKKAVKVGDLKPAKDPKGGGMPQGFPQDVKSLLKHLQLGQGPGR
Ga0193725_10068121	3300019883	Soil	MQDKKKKTKKAVKVGDLKPAKDPKGGGMPQGFPQDVKS
Ga0193692_10373031	3300020000	Soil	MQGKKKKTKKRIKVDDLNPAKDPKGGMTRGPPRDLKWLLKHLQLGQEPTETDSKRKSAS
Ga0193692_10454951	3300020000	Soil	MQDKKKKTKKAVKVYDLKPAKDPKGRGMPQGSPQDLKSLLRHLQLGQGPAR
Ga0193735_10011242	3300020006	Soil	MQDKKKKTKKVLKVDDLEPAKDPKGGGMPQGFPQDVKSLLKHLQLGQGPGR
Ga0193735_10051435	3300020006	Soil	MQDKKKKTKKAVKVYDLKPAKDPKGGGMPQGSPQDLKSLLRHLQLGQGPGR
Ga0193735_11865501	3300020006	Soil	MQGKQKKTKKRVKVDDLKPAKDPKAGMPQGPPHDLKWLLKHLQLG
Ga0193749_10140101	3300020010	Soil	MQDKKKKTKKVLKVDDLKPAKDPKGGGMPQGFPQDVKSLLKHLQLGQGPGR
Ga0193732_10825581	3300020012	Soil	MQDKKKKTKKAVKVGDLKPAKDPKGGGMPQGSPQDVKSLLKLLQLGQGPGR
Ga0210381_103122621	3300021078	Groundwater Sediment	MQDKKKKTKKVLKVDDLEPAKDPKGGGMPQGFPQDVKSLLKYLQLGQGPGR
Ga0210382_102450041	3300021080	Groundwater Sediment	MQEKKKKTKKAVKVGDLKPAKDPKGGGMPQGFPQDVKSLLKHLQVGQGPGR
Ga0210382_103933911	3300021080	Groundwater Sediment	MQDKKKKTKKAVKVGDLKPAKDPKGGGMPSPQNLKSL
Ga0193719_103457501	3300021344	Soil	VTSMQDKKKKTKKAVKVYDLKPAKDPKGGGMPQGSPQDLKSLLRHLQLGQGPGR
Ga0193709_10011113	3300021411	Soil	MQDKKKKTNKAVKVYDLKPAKDPKEGGMPQDLKSLLRHLQLGVRVPAGSGSP
Ga0193694_10017345	3300021415	Soil	MQDKKKRTKKAVKVGDLKPAKDPKGGGMPQGSPQDVKSLLKLLQLGQGPGR
Ga0247747_10540951	3300022737	Soil	MPGKKKRTRKRIKVDDLNPAKDPKGGMTRGPPHDLKWLLKHLQLGQ
Ga0193714_10005173	3300023058	Soil	MHDKKKKTKKAVKVGDLKPAKDPKGGGMPQGFPQDLKSLLKHLQLGQGPGR
Ga0207693_107343922	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MQDKKRKTKKGVKVDDLKPAKDPKGGGMPQGFPSDLKSLLKHLQLGQGPGR
Ga0207693_107483561	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MQEKKKKTKKAVKVGDLKPAKDPKGGGMPQGFPQDVKSLLKHLQ
Ga0207701_101912621	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MPGKKKKTKKRVKVDDLKPAKDPKGGMTRGPPHDLKWLLKHLQLGQEPNQT
Ga0207701_102436112	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	KKKTKKMVKVDDLKPAKDPKGGGMPQGPSENVEWILKHLQLGERPPGSTPR
Ga0207706_103252272	3300025933	Corn Rhizosphere	MPGKKKKTKKRIKVADLRPAKDPKGGMTRGPPHDLKWLLKHLQLGQEPSQPDTNPKSAS
Ga0209472_10275881	3300026323	Soil	MRGKQKKTKKRVKVDDLKPAKDPKGGMPQGPPQDLKWLLKHLQLGQRRPGGGR
Ga0209058_13052102	3300026536	Soil	MQDKKKKTKKAVKVGDLKPAKDPKGGGMPQGFPQDLKSL
Ga0209376_13728091	3300026540	Soil	MQDKKKKTKKAVKVGDLKPAKDPKGGGMPQGFPQDLKSLLRLLQLGQGPGR
Ga0307307_103044691	3300028718	Soil	MQDKKKKTKKAVKVGDLKPAKDPKGGGMPQGSPQDVKSLLKLLQLGQG
Ga0307304_106077551	3300028885	Soil	MQDKKKKTKKAVKVGDLKPAKDPKGGGMPQGFPQDLKSLLKH
Ga0075386_100360153	3300030916	Soil	MRPWGHDILNMEDKKKKTKKGVKVDDLKPAKDPKGGGMPQGSPQDIESLLQHLQLGLGPG
Ga0075400_100069052	3300030972	Soil	MRPWGHDILNMEDKKKKTKKGVKVDDLKPAKDPKGGGMPQGSLQDIESLLKHLQLAQGPG
Ga0170834_1032991191	3300031057	Forest Soil	MRSGCRDAQVTNMQDKKKKTKIRVKVDDLKPAKDPKGGGMPQGSPQDVKSLLKHLQL
Ga0170824_1028477491	3300031231	Forest Soil	HKQSSKGQVTNVEDKKKKTRKAVKVGDLKPAKDPKGGGMPQGSPQDVKSLLKHLQLGLGPGR
Ga0170824_1056942371	3300031231	Forest Soil	MQDKKRKTKKAVKVGDLKPAKDPKGGGMPQGSPQDVKS
Ga0170824_1079711742	3300031231	Forest Soil	MRPWGHDILNMEDKKKKTKQGVKVDDLKPAKDPKGGGMPQGSLQDIKSLLKHLQLAQGPG
Ga0170824_1117884432	3300031231	Forest Soil	MQDKKKRTKKAVKVGDLKPAKDPTGGGMPQSSPQDLKSLLKHLQLGQGPDR
Ga0170824_1135167441	3300031231	Forest Soil	MQDKKKKTKKGVKVYDLKPAKDPKGGGLPQGSPQDLKSLLRHLQLGRGPGR
Ga0170820_100562681	3300031446	Forest Soil	VQLLEAKAIDILNMQDKKKKTKKGVEVDDLKPAKDPKGGGMPQGSLQDIKSLLKHLQLAQGPGR
Ga0170820_134147131	3300031446	Forest Soil	KKAVKVGDLKPAKDPKGGGMPQGSPQDLKSLLKHLQLGQGPGR
Ga0170820_136003872	3300031446	Forest Soil	MRPWGRDILNMEDKKKKTKQGVKVDDLKPAKDPKGGGMPQGSPQDIQSLLKHLQLGQGPG
Ga0170820_165806701	3300031446	Forest Soil	VGTRHFDVQDKKKKTKKGVKVDDLKPAKDPKGGGMPQGSLQDIKSLLKHLQLAQGPGR
Ga0170818_1133248872	3300031474	Forest Soil	MQDKKKKTNKAVKVYDLKPAKGPKEGGMPQDLKSLLRHLQLGVRVPAGSGSP
Ga0307469_112408142	3300031720	Hardwood Forest Soil	MRPWGHDILNMQDKKKKTKKGVKVDDLKPAKDPKGGGMPQGFPPDLKSLLKHLQLGQGPGGGG
Ga0307468_1008713362	3300031740	Hardwood Forest Soil	MRPWGHDILNMEDKKKKTKKGVKVDDLKPAKDPKGGGMPQGSLQDIKSLLKHLQLAQGPG
Ga0310885_106662211	3300031943	Soil	MQDKKKKTKKAVKVGDLKPAKDPEGGGLPQGSPQDLKSLLRHLQLGQGPAR
Ga0307471_1001914202	3300032180	Hardwood Forest Soil	MQDKKKKTKKGGKVDDLKPARDPNGGMPQGPLQDPKWILKHLQLGQGPGGGGETGPNSPL
Ga0307472_1002442481	3300032205	Hardwood Forest Soil	MQDKKKKTKKEVKVDDLKPAKDPKGGGIPQGFPPDLKSLLKHLQLGQRPGR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F060226

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences