Metagenome / Metatranscriptome Family F060306

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F060306
Family Type	Metagenome / Metatranscriptome
Number of Sequences	133
Average Sequence Length	59 residues
Representative Sequence	MFDKFGRLLCPTCGEPMTRAAKFDSHREGVVRTAFACESCEAVMMLTGRVSPAEAEDQRAA
Number of Associated Samples	94
Number of Associated Scaffolds	133

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	75.76 %
% of genes near scaffold ends (potentially truncated)	48.12 %
% of genes from short scaffolds (< 2000 bps)	91.73 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (66.165 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (35.338 % of family members)
Environment Ontology (ENVO)	Unclassified (48.872 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.391 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 16.39% β-sheet: 6.56% Coil/Unstructured: 77.05%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 133 Family Scaffolds
PF04392	ABC_sub_bind	8.27
PF07758	DUF1614	4.51
PF03928	HbpS-like	3.01
PF03401	TctC	2.26
PF06707	DUF1194	2.26
PF13460	NAD_binding_10	1.50
PF16655	PhoD_N	1.50
PF00072	Response_reg	0.75
PF02426	MIase	0.75
PF00196	GerE	0.75
PF02775	TPP_enzyme_C	0.75
PF00571	CBS	0.75
PF02954	HTH_8	0.75
PF13415	Kelch_3	0.75
PF07277	SapC	0.75
PF01895	PhoU	0.75
PF13751	DDE_Tnp_1_6	0.75
PF13442	Cytochrome_CBB3	0.75
PF12710	HAD	0.75
PF01527	HTH_Tnp_1	0.75
PF13924	Lipocalin_5	0.75

COG ID	Name	Functional Category	% Frequency in 133 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	8.27
COG4089	Uncharacterized membrane protein	Function unknown [S]	4.51
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	2.26
COG4829	Muconolactone delta-isomerase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.75

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.17 %
Unclassified	root	N/A	33.83 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	66.17 %
Unclassified	root	N/A	33.83 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	66.17 %
Unclassified	root	N/A	33.83 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	45.86 %
Unclassified	root	N/A	33.83 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	39.85 %
Unclassified	root	N/A	33.83 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.75 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.83 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	18.80 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10.53 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.75 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	15.79 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.01 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	3.01 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.75 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.75 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	15.79 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	3.01 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.26 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.75 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.75 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.75 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000837\|AP72_2010_repI_A100DRAFT_1021539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	905	Open in IMG/M
3300000955\|JGI1027J12803_100604413	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300000956\|JGI10216J12902_110465256	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300002906\|JGI25614J43888_10004730	All Organisms → cellular organisms → Bacteria	4337	Open in IMG/M
3300004629\|Ga0008092_11233039	Not Available	684	Open in IMG/M
3300004633\|Ga0066395_10188286	All Organisms → cellular organisms → Bacteria → Proteobacteria	1072	Open in IMG/M
3300004633\|Ga0066395_10720235	Not Available	594	Open in IMG/M
3300004633\|Ga0066395_10980664	Not Available	515	Open in IMG/M
3300005332\|Ga0066388_100699975	All Organisms → cellular organisms → Bacteria → Proteobacteria	1620	Open in IMG/M
3300005332\|Ga0066388_102472836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	943	Open in IMG/M
3300005332\|Ga0066388_102942765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	870	Open in IMG/M
3300005332\|Ga0066388_106043136	Not Available	611	Open in IMG/M
3300005332\|Ga0066388_106671545	Not Available	581	Open in IMG/M
3300005332\|Ga0066388_107705530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	539	Open in IMG/M
3300005332\|Ga0066388_108728030	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300005363\|Ga0008090_10158484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3801	Open in IMG/M
3300005467\|Ga0070706_100613412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1011	Open in IMG/M
3300005536\|Ga0070697_100068926	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2897	Open in IMG/M
3300005553\|Ga0066695_10255694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1106	Open in IMG/M
3300005713\|Ga0066905_100109126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1900	Open in IMG/M
3300005713\|Ga0066905_100350525	All Organisms → cellular organisms → Bacteria → Proteobacteria	1179	Open in IMG/M
3300005713\|Ga0066905_100616843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	920	Open in IMG/M
3300005713\|Ga0066905_100731020	All Organisms → cellular organisms → Bacteria	852	Open in IMG/M
3300005713\|Ga0066905_101247763	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	666	Open in IMG/M
3300005713\|Ga0066905_101658504	Not Available	586	Open in IMG/M
3300005713\|Ga0066905_102010829	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300005713\|Ga0066905_102026059	Not Available	534	Open in IMG/M
3300005764\|Ga0066903_100696871	Not Available	1789	Open in IMG/M
3300005764\|Ga0066903_102398150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1020	Open in IMG/M
3300005764\|Ga0066903_107773332	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300005764\|Ga0066903_109119810	Not Available	501	Open in IMG/M
3300005937\|Ga0081455_10539196	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300006046\|Ga0066652_101050340	Not Available	772	Open in IMG/M
3300006172\|Ga0075018_10216504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	914	Open in IMG/M
3300009137\|Ga0066709_103231884	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300009792\|Ga0126374_10188242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1293	Open in IMG/M
3300010046\|Ga0126384_10510170	Not Available	1038	Open in IMG/M
3300010046\|Ga0126384_10810742	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300010047\|Ga0126382_10773363	All Organisms → cellular organisms → Bacteria	815	Open in IMG/M
3300010048\|Ga0126373_11832331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	670	Open in IMG/M
3300010359\|Ga0126376_12094947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	609	Open in IMG/M
3300010359\|Ga0126376_12816460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	536	Open in IMG/M
3300010360\|Ga0126372_12886672	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300010361\|Ga0126378_11265284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	834	Open in IMG/M
3300010362\|Ga0126377_10344898	All Organisms → cellular organisms → Bacteria	1484	Open in IMG/M
3300010366\|Ga0126379_10398868	Not Available	1423	Open in IMG/M
3300010366\|Ga0126379_10530636	All Organisms → cellular organisms → Bacteria	1253	Open in IMG/M
3300010376\|Ga0126381_102033443	Not Available	828	Open in IMG/M
3300010398\|Ga0126383_12948724	Not Available	556	Open in IMG/M
3300012199\|Ga0137383_10645850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	774	Open in IMG/M
3300012200\|Ga0137382_11005788	Not Available	598	Open in IMG/M
3300012203\|Ga0137399_11716880	Not Available	516	Open in IMG/M
3300012361\|Ga0137360_11072221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	696	Open in IMG/M
3300012685\|Ga0137397_10842767	Not Available	680	Open in IMG/M
3300012948\|Ga0126375_11141827	Not Available	644	Open in IMG/M
3300012971\|Ga0126369_10391937	All Organisms → cellular organisms → Bacteria	1424	Open in IMG/M
3300012971\|Ga0126369_10793323	All Organisms → cellular organisms → Bacteria	1029	Open in IMG/M
3300012971\|Ga0126369_13339189	Not Available	526	Open in IMG/M
3300012971\|Ga0126369_13575751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	509	Open in IMG/M
3300015053\|Ga0137405_1334915	All Organisms → cellular organisms → Bacteria → Proteobacteria	5496	Open in IMG/M
3300016270\|Ga0182036_10326558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1175	Open in IMG/M
3300016319\|Ga0182033_10769437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	847	Open in IMG/M
3300016341\|Ga0182035_10751379	Not Available	853	Open in IMG/M
3300016341\|Ga0182035_11048580	Not Available	724	Open in IMG/M
3300016404\|Ga0182037_11273033	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	648	Open in IMG/M
3300016445\|Ga0182038_10468046	All Organisms → cellular organisms → Bacteria	1070	Open in IMG/M
3300021178\|Ga0210408_10594401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	877	Open in IMG/M
3300021560\|Ga0126371_11508003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	800	Open in IMG/M
3300025910\|Ga0207684_11166432	Not Available	639	Open in IMG/M
3300026304\|Ga0209240_1187578	Not Available	625	Open in IMG/M
3300027527\|Ga0209684_1003583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2644	Open in IMG/M
3300027903\|Ga0209488_10138701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1835	Open in IMG/M
3300028878\|Ga0307278_10032259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2394	Open in IMG/M
3300028878\|Ga0307278_10446686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	566	Open in IMG/M
3300031543\|Ga0318516_10155751	Not Available	1313	Open in IMG/M
3300031544\|Ga0318534_10361866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	834	Open in IMG/M
3300031545\|Ga0318541_10266407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	953	Open in IMG/M
3300031546\|Ga0318538_10407704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	735	Open in IMG/M
3300031546\|Ga0318538_10640504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	577	Open in IMG/M
3300031561\|Ga0318528_10596407	Not Available	592	Open in IMG/M
3300031573\|Ga0310915_10078643	All Organisms → cellular organisms → Bacteria	2188	Open in IMG/M
3300031573\|Ga0310915_10284402	Not Available	1167	Open in IMG/M
3300031573\|Ga0310915_10845332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	643	Open in IMG/M
3300031573\|Ga0310915_11095151	Not Available	553	Open in IMG/M
3300031668\|Ga0318542_10265215	Not Available	875	Open in IMG/M
3300031679\|Ga0318561_10685589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	563	Open in IMG/M
3300031681\|Ga0318572_10179919	Not Available	1230	Open in IMG/M
3300031713\|Ga0318496_10388394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	771	Open in IMG/M
3300031719\|Ga0306917_10255013	All Organisms → cellular organisms → Bacteria	1345	Open in IMG/M
3300031736\|Ga0318501_10010941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3508	Open in IMG/M
3300031744\|Ga0306918_10656054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	821	Open in IMG/M
3300031744\|Ga0306918_11087825	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	619	Open in IMG/M
3300031777\|Ga0318543_10288774	All Organisms → cellular organisms → Bacteria → Acidobacteria	733	Open in IMG/M
3300031777\|Ga0318543_10335541	Not Available	677	Open in IMG/M
3300031780\|Ga0318508_1127064	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300031794\|Ga0318503_10182204	All Organisms → cellular organisms → Bacteria → Proteobacteria	680	Open in IMG/M
3300031796\|Ga0318576_10412231	Not Available	638	Open in IMG/M
3300031805\|Ga0318497_10526998	Not Available	662	Open in IMG/M
3300031819\|Ga0318568_10097090	All Organisms → cellular organisms → Bacteria	1760	Open in IMG/M
3300031835\|Ga0318517_10586197	Not Available	501	Open in IMG/M
3300031859\|Ga0318527_10476411	Not Available	532	Open in IMG/M
3300031860\|Ga0318495_10536250	Not Available	509	Open in IMG/M
3300031879\|Ga0306919_10458217	Not Available	981	Open in IMG/M
3300031879\|Ga0306919_10523178	All Organisms → cellular organisms → Bacteria	915	Open in IMG/M
3300031890\|Ga0306925_10776328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	996	Open in IMG/M
3300031890\|Ga0306925_11397039	Not Available	691	Open in IMG/M
3300031896\|Ga0318551_10571043	Not Available	651	Open in IMG/M
3300031897\|Ga0318520_10138397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1401	Open in IMG/M
3300031910\|Ga0306923_12403317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	522	Open in IMG/M
3300031912\|Ga0306921_10785600	All Organisms → cellular organisms → Bacteria	1088	Open in IMG/M
3300031945\|Ga0310913_10982087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	592	Open in IMG/M
3300031954\|Ga0306926_11001314	Not Available	994	Open in IMG/M
3300031954\|Ga0306926_12058427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	640	Open in IMG/M
3300031981\|Ga0318531_10257040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	788	Open in IMG/M
3300032001\|Ga0306922_11059054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	833	Open in IMG/M
3300032035\|Ga0310911_10059499	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2012	Open in IMG/M
3300032035\|Ga0310911_10129614	All Organisms → cellular organisms → Bacteria → Proteobacteria	1407	Open in IMG/M
3300032039\|Ga0318559_10033733	All Organisms → cellular organisms → Bacteria	2063	Open in IMG/M
3300032041\|Ga0318549_10387930	Not Available	629	Open in IMG/M
3300032043\|Ga0318556_10169306	Not Available	1131	Open in IMG/M
3300032043\|Ga0318556_10392130	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	726	Open in IMG/M
3300032052\|Ga0318506_10507516	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300032054\|Ga0318570_10077125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1427	Open in IMG/M
3300032059\|Ga0318533_10458273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	933	Open in IMG/M
3300032063\|Ga0318504_10057638	All Organisms → cellular organisms → Bacteria → Proteobacteria	1651	Open in IMG/M
3300032066\|Ga0318514_10689742	Not Available	543	Open in IMG/M
3300032089\|Ga0318525_10241214	Not Available	929	Open in IMG/M
3300032261\|Ga0306920_103947866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	539	Open in IMG/M
3300033289\|Ga0310914_10442504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1176	Open in IMG/M
3300033289\|Ga0310914_11039607	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	719	Open in IMG/M
3300033289\|Ga0310914_11138984	Not Available	681	Open in IMG/M
3300033290\|Ga0318519_10057119	All Organisms → cellular organisms → Bacteria	1974	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.25%
Host-Associated	Host-Associated	0.75%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	98.50%
Aquatic	Environmental → Aquatic	0.75%
Plants	Host-Associated → Plants	0.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	98.50%
Sediment	Environmental → Aquatic → Sediment	0.75%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	78.95%
Loam	Environmental → Terrestrial → Soil → Loam	19.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.75%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.75%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	50.38%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.80%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	17.29%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.26%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.26%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	1.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	35.34%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	17.29%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	15.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.29%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.01%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.26%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.50%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	1.50%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.75%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.75%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.75%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000837	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300004629	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A01 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300027527	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AP72_2010_repI_A100DRAFT_10215391	3300000837	Forest Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHRGGVMRTAFACESCEAVMMLMGRVS
JGI1027J12803_1006044132	3300000955	Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHREGVVKTAFACESCEAVMMLTGRVSPAGAEDQRAAQNQE
JGI10216J12902_1104652561	3300000956	Soil	GRLLCPTCGEPMTRAAKFDSHREGVVKTAFACESCEAVMMLTGRVSPAGAEDQRAA*
JGI25614J43888_100047303	3300002906	Grasslands Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHREGVVRTAFACESCEAVMMLTGRVSPAEAEDQRAG*
Ga0008092_112330392	3300004629	Tropical Rainforest Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHREGVVRLAFAWESCEAVMMLTGRVSPAEAEDQRAA*
Ga0066395_101882861	3300004633	Tropical Forest Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHRGGVMRTAFACESCEAVMMLMGRVSPAEAEDQRAA*
Ga0066395_107202352	3300004633	Tropical Forest Soil	FDKFGRLLCPTCGEPMTHAAKFDSHHEGVVRTAFACEGCEAVMMLTGRLSPAEVEEQRAA
Ga0066395_109806641	3300004633	Tropical Forest Soil	MFDKFGRLLCPTCGEPMTHAAKFDSHREGVVRTAFACKSCEAVMMLTGRVSPAEAEDQRAA*
Ga0066388_1006999751	3300005332	Tropical Forest Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHREGVVRTAFACESCEAVMMLTGRVSP
Ga0066388_1024728362	3300005332	Tropical Forest Soil	MFDKFGRLLCPTCGEPMKPAAKFDSHREGVVRAAFACESCEAVMMLTGRMSPAEAEDQRAA*
Ga0066388_1029427651	3300005332	Tropical Forest Soil	MFDKFGRLLCPTCGEPMTHAAKFDSHREGVLRTAFACESCEAVMMLMGRVSPAEAEDQRAA*
Ga0066388_1060431361	3300005332	Tropical Forest Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHRGGVMRTAFACESCEAVMMLTGRVSPAEAEDQRAA*
Ga0066388_1066715451	3300005332	Tropical Forest Soil	MFDKFGRLLCPTCGEPMTHAAKFDSHHEGVVRTAFACEGCEAVMMLTGRLSPAEVEEQRAA*
Ga0066388_1077055302	3300005332	Tropical Forest Soil	MFDKFGRLLCPTCGEPMTPAAKFDSHREGVVRTAFACESCEAVMMLTGRMSPAKAEDQRAA*
Ga0066388_1087280302	3300005332	Tropical Forest Soil	MFDKFGRLLCPTCGEPMTHAAKFDSHREGVVRTAFACESCEAVMMLTGR
Ga0008090_101584844	3300005363	Tropical Rainforest Soil	MFDKFGRLLCATCGEPMTRAAKFDSHREGVVRTAFACESCEAVMMLTGRVSPAEAEDQRAA*
Ga0070706_1006134122	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MFDKFGRLLCPTCGEPMTRAAKFDSHREGVARTAFACESCEAVMMLTGRVSPAEAEDQRAA*
Ga0070697_1000689263	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MFDKFGRLLCPTCGEPMTRAAKFDSHREGVVRTAFACESCEAVMMLTGRVSPAGAEDQRAA*
Ga0066695_102556942	3300005553	Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHREGVARTAFACESCEAVMMLTGRVSPAEAGDQRAA*
Ga0066905_1001091262	3300005713	Tropical Forest Soil	MFDKFGRLLCPTCGEPMRHAAKFDSHREGVVRTAFACESCEAVMMLTGRVSSAEAEDQRAA*
Ga0066905_1003505253	3300005713	Tropical Forest Soil	MFDKFGRLLCPTCGEPMTHAAKFDSHREGVVRTAFACESCEAVMMLTGRVSPVEAEDQRAA*
Ga0066905_1006168433	3300005713	Tropical Forest Soil	MFDKFGRLLCPTCGEPMTHAAKFDSHREGVMRTAFACESCEAVMMLTGRVSSAEAEDQRAA*
Ga0066905_1007310202	3300005713	Tropical Forest Soil	MFDKFGRLLCLTCGEPMTRAAKFDSHREGVVKTAFACESCEAVMMLTGRVSPAEAEDQRAA*
Ga0066905_1012477632	3300005713	Tropical Forest Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHRGGVMRTAFACESCEAVMMLTGLVSPAEAEDQRAA*
Ga0066905_1016585041	3300005713	Tropical Forest Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHREGVVRTAFACESCEAVMMLTGRVSPAEAEDQRAA*
Ga0066905_1020108291	3300005713	Tropical Forest Soil	GNPMFDKFGRLLCPTCGEPMTHAAKFDSHREGVVRTAFACESCEAVMMLTGRVSSAETEDQRAA*
Ga0066905_1020260593	3300005713	Tropical Forest Soil	TCGEPMTRAAKFDSHREGVVRTAFACESCEAVMMLTGRVLPAEAEDQRAA*
Ga0066903_1006968713	3300005764	Tropical Forest Soil	MFDKFGRLLCPTCGEPMRCAAKFDSQRGGVVRKAFACESCEAVMMLTRRVSPAEAEDQRVA*
Ga0066903_1023981501	3300005764	Tropical Forest Soil	MFDKFGRLLCPTCGEPMTPAAKFDSHREGVVKTAFACDSCEAMMMLPGRESPAE
Ga0066903_1077733321	3300005764	Tropical Forest Soil	MFDKFGRLLCPTCGEPMTRAAKFDSRREGVARTAFACESCEAVMMLTGRVSPAEAEDQRAA*
Ga0066903_1091198101	3300005764	Tropical Forest Soil	MFDKFGRLLCPTCGEPMTPAAKFDSHCEGVVRTAFACESCEAVIMLTGRVSPAEGGDQRAA*
Ga0081455_105391962	3300005937	Tabebuia Heterophylla Rhizosphere	MFDKFGRLLCPTCGEPMTRAAKFDSHRGGVMRTAFACESCEAVMMLTGRVSPAEAEDKRAA*
Ga0066652_1010503403	3300006046	Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHREGVVRTAFAWESCEAVMMLTGRVSPVEAEDQRAA*
Ga0075018_102165043	3300006172	Watersheds	MFDKFGRLLCPTCGEPMTHAAKFDSHREGVVRTAFACESCEAVMMLTGRVSPAEAEDQRAG*
Ga0066709_1032318841	3300009137	Grasslands Soil	MFDKFGPLLCPTCGEPMTRAAKFDSHREGVVRTAFACESCEAMMMLTGRVSPAEAEDQRVA*
Ga0126374_101882421	3300009792	Tropical Forest Soil	MFDKFGRLLCPTCGEPMTHAAKFDSHREDVVRTAFACESCEAVMMLTGRVSSAEAEDQRAA*
Ga0126384_105101702	3300010046	Tropical Forest Soil	FDKFGRLLCPTCGEPMTRAAKFDSHRGDVMRTAFACESCEAVMMLTGRVSPAEVEDQRAA
Ga0126384_108107422	3300010046	Tropical Forest Soil	MFDKFGRLLCPTCGEPMTHAAKFDSHREGVVRTAFACEGCEAVMMLAGRVSPAETEDQRAA*
Ga0126382_107733631	3300010047	Tropical Forest Soil	MFDKFGRLLCPTCGEPMTHAAKFDSHREGVVRTAFACESCEAVMMLTGRVSSAETEDQRAA*
Ga0126373_118323311	3300010048	Tropical Forest Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHREGVVRTAFACESCEAVTMLTGRVSPAEAEDQRAA*
Ga0126376_120949471	3300010359	Tropical Forest Soil	MFDKFGRLLCPTCGEPMTPAAKFDSHREGVVRTAFACESCEAVMMLTGRMSPAKAEDQ
Ga0126376_128164602	3300010359	Tropical Forest Soil	MFDKFGRLLCPTCGEPMTPAAKFDSHREGVVRTAFACESCEAVMMLTGRMSPAKAED
Ga0126372_128866722	3300010360	Tropical Forest Soil	MFDKFGRLLCPTCGEPMTHAAKFDSHREGVVRTAFACESCEAVMMLTGRVSPAEAEDQRAA*
Ga0126378_112652842	3300010361	Tropical Forest Soil	MFDKFGRLLCPTCGEPMMHAAKFDSHREDVVRTAFACESCEAVVMLTGRVSPAEAEDQRAA*
Ga0126377_103448981	3300010362	Tropical Forest Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHRGGVMRTAFACESCEAVMMLTGRVSPAEAEDQ
Ga0126379_103988683	3300010366	Tropical Forest Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHREGVVRTAFACESCEAVMMLTGRASPAEAEDQRAA*
Ga0126379_105306361	3300010366	Tropical Forest Soil	GGNPMFDKFGRLLCPTCGEPMTPAAKFDSHREGVVRTAFACESCEAVMMLTGRMSPAKAEDQRAA*
Ga0126381_1020334432	3300010376	Tropical Forest Soil	MFDKFGRLLCPTCGEPMKPAAKFDSHREGVVRTAFACESCEAVMMLTGRMSPAEAEDQRAA*
Ga0126383_129487241	3300010398	Tropical Forest Soil	CGEPMTRAAKFDSHREGVARTAFACESCEAVMMLTGRVSPAEAEDQRAA*
Ga0137383_106458501	3300012199	Vadose Zone Soil	MFDKFGRLLCPTCGDPMTRAAKFDSHREGVVRTAFACESCEAVMMLTGRVSPAEAEDQRAG*
Ga0137382_110057881	3300012200	Vadose Zone Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHREGVVRTAFACESCEAVMMLTGRVSPVEAEDQRAA*
Ga0137399_117168801	3300012203	Vadose Zone Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHREGVVRTAFACESCEAVMMLTGRVSPAEAEGQRAG*
Ga0137360_110722211	3300012361	Vadose Zone Soil	FGRLLCPTCGEPMTRAAKFDSHREGVVRTAFACESCEAVMMLTGRVSPAEAEDQRAG*
Ga0137397_108427671	3300012685	Vadose Zone Soil	FGRLLCPTCGEPMTRAAKFDSHREGVVRTAFACESCEAVMMLTGQVSPAEAEDQRAA*
Ga0126375_111418272	3300012948	Tropical Forest Soil	MFDKFGRLLCPTCGEPMTHAAKFDSHREGVMRTAFACESCEAVMMLTGRVSPAEAEDQRAA*
Ga0126369_103919373	3300012971	Tropical Forest Soil	MFDKFGRLLCPTCGEPMTHAAKFDSHREDVVRTAFACESCEAVVMLTGRVSPAEAEDQRAA*
Ga0126369_107933232	3300012971	Tropical Forest Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHREGVARTAFACESCEAVMMLTGRVSPAEA
Ga0126369_133391891	3300012971	Tropical Forest Soil	MFDKFGRLLCPTCGEPMRCAAKFDSQRGGVVRKAFACESCEAVMMLTGRASPAEAEDQRAA*
Ga0126369_135757511	3300012971	Tropical Forest Soil	PGGNPMFDKFGRLLCPTCGEPMTHAAKFDSHREGVVRTAFACKSCEAVMMLTGRVSPAEAEDQRAA*
Ga0137405_13349158	3300015053	Vadose Zone Soil	MFDKFGRLLCPTCRRTDDARGKIRFHREGVVRTAFACESCEAVMMLTGQVSAGRG*
Ga0182036_103265581	3300016270	Soil	GRLLCPTCGEPMTRAAKFDSHRGGVMRTAFACESCEAVMMLMGRVSPAEAEDQRAA
Ga0182033_107694373	3300016319	Soil	MFDKFGRLLCPTCGEPMTHAAKFDSHREGVVRTAFACESCEAVMMLTGRVSPAEAEDQR
Ga0182035_107513791	3300016341	Soil	CGEPMTRAAKFDSHREGVVRTAFACESCEAVMMLTGRVSPAEAEDQRAA
Ga0182035_110485801	3300016341	Soil	NPMFDKFGRLLCPTCGEPMTRAAKFDSHRGGVMRTAFACESCEAVMMLMGRVSPAEAEDQRAA
Ga0182037_112730331	3300016404	Soil	MFDKFGRLLCPTCGEPMTPAAKFDSHREGVMRTAFACDSCEAMMMLPGRESPAEAEGISRVAPRPRITG
Ga0182038_104680462	3300016445	Soil	MFDKFGRLLCPTCGEPMTPAAKFDSHREGVVRTAFACDSCEAMMMLPGRESPAEAEGISRVAPRPRITG
Ga0210408_105944012	3300021178	Soil	MFDKFGRLLCPTCGEPMTHAAKFDSHREGVVRTAFACESCEAVMMLTGRVSPAEAEDQRA
Ga0126371_115080031	3300021560	Tropical Forest Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHRGGVMRTAFACESCEAVMMLMGRVSPAEAEDQRA
Ga0207684_111664321	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MFDKFGRLLCPTCGEPMTRAAKFDSHREGVARTAFACESCEAVMMLTGRVSPAEAEDQRA
Ga0209240_11875781	3300026304	Grasslands Soil	MFDKFGRLLCPTCGDPMTRAAKFDSHREGVGRTAFACESCEAVMMLTGRVSPAEAEDQRA
Ga0209684_10035831	3300027527	Tropical Forest Soil	MFDKFGRLLCPTCGEPMTPAAKFDSHREGVVRTAFACESCEAVMMLTGRMSPAKAEDQRA
Ga0209488_101387012	3300027903	Vadose Zone Soil	MFDKFGRLPCPTCGEPMTRAAKFDSHREGVVRTAFACESCEAVMMLTGRVSPAEAEGQRA
Ga0307278_100322594	3300028878	Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHREGVARTAFACESCEAVMMLTGRESPAEAEDQRA
Ga0307278_104466862	3300028878	Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHREGVVRTAFACESCEAVMMLTGQVSPAEAEDQRA
Ga0318516_101557511	3300031543	Soil	MFDKFGRLLCPTCGEPMTHAAKFDSHREGVVRTAFACKSCEAVMMLTGRVSPAEAEDQRA
Ga0318534_103618662	3300031544	Soil	MFDKFGRLLCPTCGEPMTHAAKFDSHREGGVRTAFACESCEAVMMLTGRVSPAEAEDQRA
Ga0318541_102664072	3300031545	Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHREGVVRTAFACESCEAMMMLTGRVSPAEAEDQRA
Ga0318538_104077042	3300031546	Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHREGVVRTAFACESCEAVMMLTGRVSPTEAEDQRA
Ga0318538_106405041	3300031546	Soil	MFDKFGRLLCPTCGEPMKRAAKFDSHRKGVVRTAFACESCEAVMMLTGRGSPAEAEDQRA
Ga0318528_105964072	3300031561	Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHRGGVMRTAFACESCEAVMMLTGRVSPAEAEDQRA
Ga0310915_100786433	3300031573	Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHREGVVRTAFACESCEAVMMLTGRVSPPEAEDQRA
Ga0310915_102844022	3300031573	Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHREGVVRTAFACESCEAMMMLTGRVS
Ga0310915_108453322	3300031573	Soil	MFDKFGRLLCPTCGEPMTPAAKFDSHREGVMRTAFACDSCEAMMMLPGRELPAEAEGISRVAPRPRITG
Ga0310915_110951511	3300031573	Soil	FGRLLCPTCGEPMTRAAKFDSHRGGVMRTAFACESCEAVMMLMGRVSPAEAEDQRAA
Ga0318542_102652152	3300031668	Soil	MFDKFGRLVCPTCGEPMTHAAKFDSHREGVVRTAFACKSCEAVMMLTGRVSPAEAEDQRA
Ga0318561_106855891	3300031679	Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHREGVVRTAFACESCEAVMMLTGRVSPP
Ga0318572_101799191	3300031681	Soil	CPTCGEPMTRAAKFDSHREGVVRTAFACESCEAVMMLTGRVSPAEAEDQRAA
Ga0318496_103883941	3300031713	Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHREGVVRTAFACESCEAVMMPTGRVSPPEAEDQRA
Ga0306917_102550131	3300031719	Soil	MFDKFGRLLCPTCGEPMTPAAKFDSHREGVMRTAFACDSCEAMMMLPGRESPAEGISRVAPRPRITG
Ga0318501_100109411	3300031736	Soil	LLCPTCGEPMTHAAKFDSHREDVVRTAFACESCEAVVMLTGRVSPAEAEDQRAA
Ga0306918_106560542	3300031744	Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHREGVVRTAFACESCEAVMMLTGR
Ga0306918_110878253	3300031744	Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHRGGVMRTAFACESCEAVMMLTGRVSPAEAE
Ga0318543_102887743	3300031777	Soil	PTCGEPMTRAAKFDSHREGVVRTAFACESCEAVMMLTGRVSPAEAEDQRAA
Ga0318543_103355411	3300031777	Soil	MFDKFGRLLCPTCGEPMTHAAKFDSHREGVVRTAFACKSCEAVMMLSPAE
Ga0318508_11270641	3300031780	Soil	LCPTCGEPMTHAAKFDSHREGVVRTAFACKSCEAVMMLTGRVSPAEAEDQRAA
Ga0318503_101822042	3300031794	Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHRGGVMRTAFACESCEAVMMLMGRVSPAEVEDQRA
Ga0318576_104122312	3300031796	Soil	MFDKFGRLLCPTCGEPMTHAAKFDSHREGVVRTAFACKSCEAVMMLTGRVSPAEAE
Ga0318497_105269981	3300031805	Soil	TCGEPMKRAAKFDSHRKGVVRTAFACESCEAVMMLTGRGSPAEAEDQRAA
Ga0318568_100970901	3300031819	Soil	MFDKFGRLLCPTCGEPMTHAAKFDSHREGVVRTAFACESCEAVMMLTGRVSPAEAE
Ga0318517_105861972	3300031835	Soil	FGRLLCPTCGEPMTRAAKFDSHREGVVRTAFACESCEAVMMLTGRVSPAEAEDQRAA
Ga0318527_104764111	3300031859	Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHRGGVMRTAFACESCEAVMMLMGRV
Ga0318495_105362501	3300031860	Soil	LCPTCGEPMKRAAKFDSHRKGVVRTAFACESCEAVMMLTGRGSPAEAEDQRAA
Ga0306919_104582173	3300031879	Soil	PMFDKFGRLLCPTCGEPMTRAAKFDSHREGVVRTAFACESCEAVMMLTGRVSPAEAEDQRAA
Ga0306919_105231782	3300031879	Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHREGVVRTAFACEGCEAVMMLTGRVSPAEAEDQRA
Ga0306925_107763281	3300031890	Soil	MFDKFGRLLCPTCGEPMTHAAKFDSHREGVVRTAFACESCEAVMMLTGRVSPAEAEEQRA
Ga0306925_113970391	3300031890	Soil	MFDKFGRLLCPTCGEPMTPAAKFDSHREGVVRTAFACDSCEAMMMLPGRESPAEGISRVAPRPRITG
Ga0318551_105710431	3300031896	Soil	MFDKFGRLLCPTCGEPMTHAAKFDSHREGVVRTAFACKSCEAVMMLTARVSPAEAEDQRA
Ga0318520_101383973	3300031897	Soil	MFDKFGRLLCPTCGEPMTHAAKFDSHREGVVRTAFACESCEAVMMLTGRVSSAEAEDQRA
Ga0306923_124033171	3300031910	Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHREGVMRTAFACESCEAVMMLTGRVSPAEAEDQRA
Ga0306921_107856002	3300031912	Soil	MFDKFGRLLCPTCGEPMTHAAKFDSHREGVVRTAFACESCEAVMMLSGRVSSAEAEERRA
Ga0310913_109820872	3300031945	Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHREGVVRTAFACESCEAVMMLTGRVSPAEAEDQ
Ga0306926_110013141	3300031954	Soil	RFDLPGGNPMFDKFGRLLCPTCGEPMKRAAKFDSHRKGVVRTAFACESCEAVMMLTGRGSPAEAEDQRAA
Ga0306926_120584271	3300031954	Soil	MFDKFGRLLCPTCGEPMTPAAKFDSHREGVVRTAFACDSCEAMMMLPGRESPAEAEGISRVAPRPRIT
Ga0318531_102570403	3300031981	Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHRGGVMRTAFACESCEAVMMLMGRVSPAEAE
Ga0306922_110590543	3300032001	Soil	MFDKFGRLLCPTCGEPMTHAAKFDSHREGVVRTAFACESCEAVMMLTGRVSSAEAEEQR
Ga0310911_100594991	3300032035	Soil	LCPTCGEPMTRAAKFDSHREGVVRTAFACESCEAVMMLTGRVSPAEAEDQRAA
Ga0310911_101296143	3300032035	Soil	CGEPMTRAAKFDSHREGVVRTAFACESCEAMMMLTGRVSPAEAEDQRAA
Ga0318559_100337335	3300032039	Soil	LLCPTCGEPMKRAAKFDSHRKGVVRTAFACESCEAVMMLTGRGSPAEAEDQRAA
Ga0318549_103879302	3300032041	Soil	IDLPGGNPMFDKFGRLLCPTCGEPMTRAAKFDSHRGGVMRTAFACESCEAVMMLMGRVSPAEAEDQRAA
Ga0318556_101693062	3300032043	Soil	MFDKFGRLLCPTCGEPMTHAAKFDSHREGVVRTAFACESCEAVMMLSGRVSSAE
Ga0318556_103921303	3300032043	Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHRGGVMRTAFACESCEAVMMLTGRVSP
Ga0318558_102786043	3300032044	Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHRGGVMRTAFACESCEAVMMLMG
Ga0318506_105075162	3300032052	Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHREGVVRTAFACESCEAVMMLTGRVSPAEAEDQR
Ga0318570_100771253	3300032054	Soil	MFDKFGRLLCPTCGEPMTHAAKFDSHREGVVRTAFACESCEAVMMLTGRVSPAE
Ga0318533_104582732	3300032059	Soil	MFDKFGRLLCPTCGEPMMHAAKFDSHREDVVRTAFACESCEAVVMLTGRVSPAEAEDQRA
Ga0318504_100576383	3300032063	Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHRGGVMRTAFACESCEAVMMLTGRVSPAEAEDQR
Ga0318514_106897421	3300032066	Soil	GRLLCPTCGEPMTRAAKFDSHRGGVMRTAFACESCEAVMMLTGRVSPAEAEDQRAA
Ga0318525_102412142	3300032089	Soil	CPTCGEPMTHAAKFDSHREGVVRTAFACESCEAVMMLTGRVSPAEAEDQRAA
Ga0306920_1039478661	3300032261	Soil	MFDKFGRLLCPTCGEPMTPAAKFDSHREGVVKTAFACDSCEAMMMLPGRESPAEAEGISRVAPRPRITG
Ga0310914_104425041	3300033289	Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHREGVVRTAFACESCEAMMMLTGRASPAEAEDQ
Ga0310914_110396072	3300033289	Soil	MFDKFGRLLCPTCGEPMTRAAKFDSHREGVVRTAFACESCEAVMMLTGRVSPAEAE
Ga0310914_111389841	3300033289	Soil	GRLLCPTCGEPMTRAAKFDSHREGVVRTAFACEGCEAVMMLTGRVSPAEAEDQRAA
Ga0318519_100571191	3300033290	Soil	MFDKFGRLLCPTCGEPMTHAAKFDSHREGVVRTAFACESCEAVMMLTGRVSPAEAEDQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F060306

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences