Metagenome / Metatranscriptome Family F060370

Basic Information
Family ID	F060370
Family Type	Metagenome / Metatranscriptome
Number of Sequences	133
Average Sequence Length	76 residues
Representative Sequence	LKKALIVLAAVVLAPVLIVSMVVLAAGDWHNIGQTEAGDKVSVSSVRVLKNNQRLALVRVEYKEPAELPQGGPFVEM
Number of Associated Samples	110
Number of Associated Scaffolds	133

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	56.34 %
% of genes near scaffold ends (potentially truncated)	53.38 %
% of genes from short scaffolds (< 2000 bps)	46.62 %
Associated GOLD sequencing projects	105
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Most Common Taxonomy
Group	Bacteria (53.383 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (12.030 % of family members)
Environment Ontology (ENVO)	Unclassified (23.308 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (62.406 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 23.81% β-sheet: 25.71% Coil/Unstructured: 50.48%
Feature Viewer

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Pfam ID	Name	% Frequency in 133 Family Scaffolds
PF02870	Methyltransf_1N	69.92
PF13520	AA_permease_2	5.26
PF01035	DNA_binding_1	3.01
PF08241	Methyltransf_11	0.75
PF00582	Usp	0.75
PF12867	DinB_2	0.75
PF07495	Y_Y_Y	0.75
PF01850	PIN	0.75
PF01243	Putative_PNPOx	0.75

COG ID	Name	Functional Category	% Frequency in 133 Family Scaffolds
COG0350	DNA repair enzyme Ada (O6-methylguanine-DNA--protein-cysteine methyltransferase)	Replication, recombination and repair [L]	72.93
COG3695	Alkylated DNA nucleotide flippase Atl1, participates in nucleotide excision repair, Ada-like DNA-binding domain	Transcription [K]	3.01
COG0642	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.75

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	53.38 %
Unclassified	root	N/A	46.62 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	53.38 %
Unclassified	root	N/A	46.62 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	53.38 %
Unclassified	root	N/A	46.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.62 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	34.59 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.75 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.62 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.26 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.75 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.26 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.75 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.75 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2199352024\|deeps__Contig_64979	All Organisms → cellular organisms → Bacteria	2043	Open in IMG/M
3300002245\|JGIcombinedJ26739_100154188	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2171	Open in IMG/M
3300004092\|Ga0062389_102138822	All Organisms → cellular organisms → Bacteria → Acidobacteria	734	Open in IMG/M
3300005332\|Ga0066388_100023125	All Organisms → cellular organisms → Bacteria → Proteobacteria	5544	Open in IMG/M
3300005332\|Ga0066388_105523433	All Organisms → cellular organisms → Bacteria → Acidobacteria	640	Open in IMG/M
3300005436\|Ga0070713_102344477	All Organisms → cellular organisms → Bacteria → Acidobacteria	516	Open in IMG/M
3300005541\|Ga0070733_10042281	All Organisms → cellular organisms → Bacteria	2846	Open in IMG/M
3300005541\|Ga0070733_10533557	All Organisms → cellular organisms → Bacteria → Acidobacteria	786	Open in IMG/M
3300005542\|Ga0070732_10905603	All Organisms → cellular organisms → Bacteria → Acidobacteria	539	Open in IMG/M
3300006050\|Ga0075028_100450868	All Organisms → cellular organisms → Bacteria → Acidobacteria	744	Open in IMG/M
3300009038\|Ga0099829_11206146	All Organisms → cellular organisms → Bacteria → Acidobacteria	627	Open in IMG/M
3300009137\|Ga0066709_100060087	All Organisms → cellular organisms → Bacteria	4375	Open in IMG/M
3300009143\|Ga0099792_10566518	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300009524\|Ga0116225_1097045	All Organisms → cellular organisms → Bacteria → Acidobacteria	1370	Open in IMG/M
3300010043\|Ga0126380_10729584	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	801	Open in IMG/M
3300010358\|Ga0126370_10897182	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	800	Open in IMG/M
3300010359\|Ga0126376_10002257	All Organisms → cellular organisms → Bacteria	10881	Open in IMG/M
3300010366\|Ga0126379_10110424	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2470	Open in IMG/M
3300010376\|Ga0126381_102173435	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300010376\|Ga0126381_102355153	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300010379\|Ga0136449_100360001	All Organisms → cellular organisms → Bacteria → Acidobacteria	2608	Open in IMG/M
3300010379\|Ga0136449_102388797	All Organisms → cellular organisms → Bacteria → Acidobacteria	763	Open in IMG/M
3300010398\|Ga0126383_11585906	All Organisms → cellular organisms → Bacteria → Acidobacteria	744	Open in IMG/M
3300010398\|Ga0126383_12791658	All Organisms → cellular organisms → Bacteria → Acidobacteria	570	Open in IMG/M
3300011120\|Ga0150983_11458135	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300011269\|Ga0137392_10999758	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300012209\|Ga0137379_11582722	All Organisms → cellular organisms → Bacteria → Acidobacteria	554	Open in IMG/M
3300012989\|Ga0164305_10706219	All Organisms → cellular organisms → Bacteria	825	Open in IMG/M
3300012989\|Ga0164305_11333792	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300015374\|Ga0132255_101712206	All Organisms → cellular organisms → Bacteria → Acidobacteria	954	Open in IMG/M
3300016357\|Ga0182032_11849818	All Organisms → cellular organisms → Bacteria → Acidobacteria	528	Open in IMG/M
3300016404\|Ga0182037_11773743	All Organisms → cellular organisms → Bacteria → Acidobacteria	551	Open in IMG/M
3300017933\|Ga0187801_10401539	All Organisms → cellular organisms → Bacteria → Acidobacteria	570	Open in IMG/M
3300017961\|Ga0187778_11327510	All Organisms → cellular organisms → Bacteria → Acidobacteria	507	Open in IMG/M
3300017970\|Ga0187783_11348479	All Organisms → cellular organisms → Bacteria → Acidobacteria	514	Open in IMG/M
3300017975\|Ga0187782_11538995	All Organisms → cellular organisms → Bacteria → Acidobacteria	524	Open in IMG/M
3300017999\|Ga0187767_10378579	All Organisms → cellular organisms → Bacteria → Acidobacteria	505	Open in IMG/M
3300018012\|Ga0187810_10148682	All Organisms → cellular organisms → Bacteria → Acidobacteria	939	Open in IMG/M
3300018038\|Ga0187855_10152953	All Organisms → cellular organisms → Bacteria	1375	Open in IMG/M
3300018047\|Ga0187859_10929141	All Organisms → cellular organisms → Bacteria → Acidobacteria	501	Open in IMG/M
3300018085\|Ga0187772_10599910	All Organisms → cellular organisms → Bacteria → Acidobacteria	783	Open in IMG/M
3300018090\|Ga0187770_10941337	All Organisms → cellular organisms → Bacteria → Acidobacteria	694	Open in IMG/M
3300020580\|Ga0210403_10349591	All Organisms → cellular organisms → Bacteria	1209	Open in IMG/M
3300020583\|Ga0210401_11251084	All Organisms → cellular organisms → Bacteria → Acidobacteria	600	Open in IMG/M
3300021178\|Ga0210408_10215275	All Organisms → cellular organisms → Bacteria	1529	Open in IMG/M
3300021181\|Ga0210388_10282263	All Organisms → cellular organisms → Bacteria	1458	Open in IMG/M
3300021181\|Ga0210388_11743403	All Organisms → cellular organisms → Bacteria → Acidobacteria	514	Open in IMG/M
3300021406\|Ga0210386_11666184	All Organisms → cellular organisms → Bacteria → Acidobacteria	528	Open in IMG/M
3300021433\|Ga0210391_10751383	All Organisms → cellular organisms → Bacteria → Acidobacteria	763	Open in IMG/M
3300021560\|Ga0126371_11210408	All Organisms → cellular organisms → Bacteria	892	Open in IMG/M
3300021560\|Ga0126371_11968866	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300021560\|Ga0126371_12397232	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300021560\|Ga0126371_13408336	All Organisms → cellular organisms → Bacteria → Acidobacteria	537	Open in IMG/M
3300027610\|Ga0209528_1135021	All Organisms → cellular organisms → Bacteria → Acidobacteria	541	Open in IMG/M
3300027867\|Ga0209167_10025069	All Organisms → cellular organisms → Bacteria	2848	Open in IMG/M
3300027898\|Ga0209067_10114220	All Organisms → cellular organisms → Bacteria → Acidobacteria	1413	Open in IMG/M
3300027905\|Ga0209415_10387630	All Organisms → cellular organisms → Bacteria	1137	Open in IMG/M
3300028801\|Ga0302226_10209365	All Organisms → cellular organisms → Bacteria → Acidobacteria	834	Open in IMG/M
3300029910\|Ga0311369_10869120	All Organisms → cellular organisms → Bacteria → Acidobacteria	723	Open in IMG/M
3300030054\|Ga0302182_10223770	All Organisms → cellular organisms → Bacteria → Acidobacteria	802	Open in IMG/M
3300030494\|Ga0310037_10082971	All Organisms → cellular organisms → Bacteria	1498	Open in IMG/M
3300030763\|Ga0265763_1013970	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300030815\|Ga0265746_1034800	All Organisms → cellular organisms → Bacteria → Acidobacteria	660	Open in IMG/M
3300031090\|Ga0265760_10345735	All Organisms → cellular organisms → Bacteria → Acidobacteria	532	Open in IMG/M
3300031231\|Ga0170824_103808219	All Organisms → cellular organisms → Bacteria → Acidobacteria	722	Open in IMG/M
3300031474\|Ga0170818_107892289	All Organisms → cellular organisms → Bacteria → Acidobacteria	574	Open in IMG/M
3300031712\|Ga0265342_10640020	All Organisms → cellular organisms → Bacteria → Acidobacteria	534	Open in IMG/M
3300031845\|Ga0318511_10632608	All Organisms → cellular organisms → Bacteria → Acidobacteria	500	Open in IMG/M
3300032180\|Ga0307471_100661176	All Organisms → cellular organisms → Bacteria → Acidobacteria	1208	Open in IMG/M
3300032892\|Ga0335081_11054577	All Organisms → cellular organisms → Bacteria → Acidobacteria	941	Open in IMG/M
3300033158\|Ga0335077_10282490	All Organisms → cellular organisms → Bacteria	1824	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.74%
Host-Associated	Host-Associated	2.26%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.20%
Aquatic	Environmental → Aquatic	16.54%
Plants	Host-Associated → Plants	2.26%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	78.20%
Freshwater	Environmental → Aquatic → Freshwater	11.28%
Sediment	Environmental → Aquatic → Sediment	4.51%
Peat	Environmental → Terrestrial → Peat	3.01%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.50%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.75%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.89%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.03%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	10.53%
Loam	Environmental → Terrestrial → Soil → Loam	8.27%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.51%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.01%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.50%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.75%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.84%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	18.05%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	10.53%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.02%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.51%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.76%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.01%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.01%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.26%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.50%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.50%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.75%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	12.03%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.77%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	9.02%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	8.27%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.77%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	4.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.51%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.76%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.76%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.76%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.01%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.01%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.26%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.26%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.26%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.26%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.26%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.50%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.50%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.50%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.75%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.75%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.75%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.75%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.75%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.75%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352024	Bare-fallow DEEP SOIL	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009638	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009759	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027546	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027610	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028801	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_3	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030054	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030763	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030815	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031247	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG	Host-Associated	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031712	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG	Host-Associated	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033888	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-3-X1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
deeps_00999320	2199352024	Soil	LKKALLILAAVVVGPLLLVRLLLAAGDWREIGQTPAGDRVFVSSVRVLKNNQRLALARVAYKQPPNLPQGGPFVETRAR
JGI12635J15846_105462902	3300001593	Forest Soil	LQFPIAESSALKKALIVLAAVVLAPVLLVSLVVFAAGDWRTIGQTEAGDKVSVSSIRILKNNQRLALVRVEYKEPAKLPQG
JGIcombinedJ26739_1001541881	3300002245	Forest Soil	LLGVWPTLKKSLFALIAVVMAPVFLVSLVAFASGDWRPVGETGAGDQISVSSVRVLKNNQRMAWVRVEYKEPARLPQGGPFVELRARVRFGCASGSEV
Ga0062385_106526821	3300004080	Bog Forest Soil	LKRVLIVLTVIVLAPVLVMSLVAFAAGDWRTVGQTEAGDRVSISSVRVLGNNQRLALVR
Ga0062389_1021388222	3300004092	Bog Forest Soil	MKKLLLVLAAVVLAPALIVSLVALAAGDWHSIGQTEAGDKVSVSSIRVLKGNQRLALVKVEYKEPAELPQGGPFVEMRARVRFNCSSGVAA
Ga0062389_1032584291	3300004092	Bog Forest Soil	LKKACIVVAAIALVLGMSLVLRASSGWRPVGQTEAGDKVSVSSVRVLKNNQRM
Ga0062386_1008533662	3300004152	Bog Forest Soil	LKKAVFILIVIVLAPVVLVSVVAFAAGDWHPIGETGAGDRVSVSSLRVRKNLRTAWVRVEYKEPAELPQGGPF
Ga0066685_106120411	3300005180	Soil	LLLGKFALKKALLLIFAVALATVLMVTFVLAAGEWRMIGQTEAGDKVSVSSVRVLKNNQRSALVRVEYKDPA
Ga0066388_1000231258	3300005332	Tropical Forest Soil	VVLAPVLAVSLLLAAGDWRAIGQTEAGDKVSVSAVRVLKNNQRTALVRVEYKEPTQLPQGGPFVEMRARVRFNCSNGLAAPSTVW
Ga0066388_1055234331	3300005332	Tropical Forest Soil	VLGKFALKKALLIIAVALATVLMVTFVRAAGEWRAIGQTEAGDKVFVSAVRVLKNNQRSALVRVEYKEPAQLPQGGPFVEMRARVHFNCTNGDASPTT
Ga0070713_1023444771	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	LKKALIVLAAVVLAPVLIVSMVVLAAGDWHNIGQTEAGDKVSVSSVRVLKNNQRLALVRVEYKEPAELPQGGPFVEM
Ga0070733_100422815	3300005541	Surface Soil	LGLCELKKAVFILIAVVLAPVVLVSVVAFAAGDWHAIGETGAGDRVSVSSLRVRNNQRTAWVRVEYKEPAELPQGGPF
Ga0070733_105335571	3300005541	Surface Soil	LKKACIVLAAIVLAPVLVMSLVLMAASDWRPVGQTEAGDKVSVSSVRVLKNNQRLALVRVEYKDPAELPQGGPFVEMRARVRFNC
Ga0070732_109056031	3300005542	Surface Soil	LKKALIILTAVVLAPVLVVSLAVFAAGDWRTIGQTETGDTVSVSSVRILKNNQRLALVRVEYKEPTKLPQGGPFVEMRAR
Ga0066702_104925731	3300005575	Soil	LKKALIVLAAIVLAPVLVVSLVVLAAGDWRAVGQTEAGDKVFVSSVRVLKNNQRVALVRVEYKE
Ga0066789_104437042	3300005994	Soil	LKKALIVLVVTALVLVVSLVVRAAGDWRTVGQTEAGDKVSVSSVRVLKDNQRLALVRVEY
Ga0075028_1004508682	3300006050	Watersheds	VLTPILVVSLLLASGEWRSIGQTEAGDKVSVSSVRVLKSNQRMALVRVEYKEPAKLPQGGPFVEMRARVRFNCASGVAA
Ga0075028_1005442022	3300006050	Watersheds	LKKTLLLVFTVALATVLLVTFVRAAGEWQPIGQTEAGDKVSVSSVRVLKNNQRSALVRVEYKEPAQLPQG
Ga0075029_1000816513	3300006052	Watersheds	LKKALLILAAVVLAPVLVVSLAVLAAGDWRLIGQTEAGDKVSVSSVHVLKNNQRVALVRV
Ga0075019_105486102	3300006086	Watersheds	VVSCKLVLGKFALKKALLIIPVVLTAVLLVTFVRAAGEWRAIGQTEAGDRISVSAVRVLKNNQRSALVRVEYR
Ga0070715_107485371	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	LKKTLLLIFAVALATVLLVTFVRAAGAWQTIGQTEAGDKVSVSSVRVLKNNQRSALVRVEYKDPAQ
Ga0075014_1010020882	3300006174	Watersheds	LKKAFLILAAVVLAPVLVMGYVLLAAGEWHTIGQTQAGGAVSISSVRALRKNERVALVRVEYK
Ga0102924_12897541	3300007982	Iron-Sulfur Acid Spring	LRKALLILAAVVLTPVLVVNFVLAAGDWRTIGQTEAGDKVSVSSVRVLKNNQRMALVRVEYKEP
Ga0099829_107426991	3300009038	Vadose Zone Soil	LRKALIVLAAIVLAPVLVVSLVVLAASDWRTVGQTEAGDKVSVSSVRVLKNNQRIALVRVEYKEPAELPQ
Ga0099829_112061461	3300009038	Vadose Zone Soil	MSNLKKILLVLGAVVLGPVLLIGLVALAAGDWHAIGETGRGDKVSVSSVRILKNSLRTAWVRVEFKEPASLPQGGPFVEVRARVRFNC
Ga0066709_1000600871	3300009137	Grasslands Soil	MSNFKKMLLVLGAVVLGPVLLIELVALAAGDWHAVGETGRGDKVSVSSMRILKNNMRTAWVRVEFKEPASLPQGGPFVEMRARVRFNCKTGSSIPSDE
Ga0099792_105665181	3300009143	Vadose Zone Soil	LKKVLVVLFAVVLAPVLLVSLVVFAAGDWHQVGETATGDKIFVSSIRMLKNNQRMALVRVEYKEPVKLPQGGPFVELRAR
Ga0116222_13253561	3300009521	Peatlands Soil	LKKALIVLAAIVLAPVLVVSLVVRAARDWRTIGQTEAGDTVSVSSVRVLKNNQRLALVRVEYKDPA
Ga0116222_13793151	3300009521	Peatlands Soil	VCAANSRQGIEALKKALLILAAVVLAPVLVVSLVLAAGDWRAIGQTEAGDKVSVSAIRVLTKNQRLALVRV
Ga0116218_11488873	3300009522	Peatlands Soil	VLQFPAWEKQALKKALLILAAVVLAPVLVVSLVVLAAGDWRTIGQTEAGDKVSVSSVRVLKSN
Ga0116221_14991032	3300009523	Peatlands Soil	LKKLLIVLAAVVLAPALVVSLVVLAAGDWHAIGQTESGDKVSVSSIRVLKNNQRLALVRVEYKEPAELPQGGPFIE
Ga0116225_10970453	3300009524	Peatlands Soil	LKKALLILAAVVLAPVLVVSLVVLAAGDWRTIGQTDAGDKISVSSVRVLKKNQRIALVRVEYKEPAKLPQGGPFVEMRA
Ga0116113_10683222	3300009638	Peatland	VAVLAAVVLAPVLVVSLVAFAAGDWRAVGQTEAGDKVSVSSVRVLRNNQRLALVRVEYKEPAELP
Ga0116216_108307631	3300009698	Peatlands Soil	VLQFPAWEKQALKRALLILAAVVLAPVLLVSLVVLAAGDWRTIGQTEAGDKVSVSSVRVLKSNQRMALVRVEFKNPAELPQG
Ga0116101_10113743	3300009759	Peatland	VAVLAAVVLAPVLVVSLVAFAAGDWRAVGQTEAGDKVSVSSVRVLRNNQRLALVRVEYKEPAE
Ga0116219_102772352	3300009824	Peatlands Soil	LKKLLIVLAAVVLAPALVVSLVVLAAGDWHAIGQTEAGDKVSVSSIRVLKNNQRLALVRVEYKEPAELPQGG
Ga0126380_107295841	3300010043	Tropical Forest Soil	VVLAPVLAVSLLLAAGDWRAIGQTEAGDKVSVSAVRVLKNNQRTALVRVEYKEPTQLPQGGPFVEMRAR
Ga0126370_108971822	3300010358	Tropical Forest Soil	LKKAILIIAVVLAPVLAVSLLSAAGEWRTIGQTEAGDKVSVSAVRVLKNNQRTALVRVEFKEPTQLPQGGPFVEMRARARFNCSNGL
Ga0126376_100022571	3300010359	Tropical Forest Soil	VVLAPVLAVSLLLAAGDWRTIGQTEAGDKVSVSAVRVLKNNQRTALVRVEFKAPTQLPQGGPFVEMRARVRFNCANGIANPTTAQSTKVRS
Ga0126372_107868332	3300010360	Tropical Forest Soil	LVLGKFALKKALLIIAVVIAPVLIVTLVRAAGEWQPIGQTEAGDKVSISSVRVLKNNQRSALVRVEYKEP
Ga0126379_101104241	3300010366	Tropical Forest Soil	VLGKFALKKALLIIAVALATVLMVTFVRAAGEWRAIGQTEAGDKVFVSAVRVLKNNQRSALVRVEYKEPAQLPQGGPFVEMRARVHF
Ga0126381_1003405823	3300010376	Tropical Forest Soil	LKKALIILAVVALAPAVVVNLLLAAGEWRTIGQTASGDTVSISSIRTLKNNQKTALVRVEYKEPAQLP
Ga0126381_1021734351	3300010376	Tropical Forest Soil	LKKALIIFAVVALAPAVVVKMLLAAGEWRTIGQTAGGDTVSISSVRTLKNNQKTALVRVEYKEPAQLPQGGPFVEMRA
Ga0126381_1023551531	3300010376	Tropical Forest Soil	VELNKAFVIVAAVVLAPVIGANLARAAEDWRIIGQTANGDTVSISSVRILKNNQRTGLVRVEYKEPAEL
Ga0136449_1003600011	3300010379	Peatlands Soil	LKKALIVLAAVVLAPVLVVSLVVLAAGDWRTIGQTEAGDKVSVSSVRVLKNNQRLALVRIEYKDPAELPQGGPFVEMRARVRFNCTSGA
Ga0136449_1023887971	3300010379	Peatlands Soil	LRKALLIFAVVVLAPALLVSLAVLAAGDWRTIGQTGAGDTVSVSSVRVLKSNQRVALVRVEFKEPATLPQGGPFVEMRARVRFNC
Ga0126383_115859061	3300010398	Tropical Forest Soil	LKKKPLLIIAVVLAPVLAVSLLSAAGEWRTIGQTEAGDKVSVSAVRVLKNNQRSALVRVEFKEPTQLPQGGPFVEMRARVRFNCSNGVAAP
Ga0126383_127916581	3300010398	Tropical Forest Soil	MLQSSAANLVLGKFALKKALLIIAAVIAPILIVTLVRAAGEWQTIGQTESGDKVSISSVHVLKNNQRSALVRVEYKEPAQLPQGGPFVEMRARV
Ga0150983_114581351	3300011120	Forest Soil	LKKSLLIVGAVVLAPMLVVSLVVFAAGDWRTIGWTEAGDQVSVSSIRILKNNQRIALVRVEFKEPAELPQGGPFVEMRARVRFNCSNGAA
Ga0137392_109997581	3300011269	Vadose Zone Soil	LKKALTILVALVLAPILLVSLVAFAAGDWHPVGETATGAKVSVSSIRMLKNNQRTALVRVQYKEPTKLGPGDPFVETRARVR
Ga0137383_105023732	3300012199	Vadose Zone Soil	LRKALIVLAAIVLAPVLVVSLVVLAASDWRTVGQTEAGDKVSVSSVRVLKNNKRIALV
Ga0137379_102495101	3300012209	Vadose Zone Soil	LRKALIVLAAIVLAPVLVVSLVVLAASDWRTVGQTEAGDKVSVSSVRVLKNNQRIALVRVEYKEPAE
Ga0137379_115827222	3300012209	Vadose Zone Soil	VCCNRDCESSALKKAIIVVTAVVLPPVLLFSMAVFAAADWRAIGETEAGHKIFVSSIRVLKNNQRSALVRVEYKEPTKLPQGGPFVEMRARVRFNCNSG
Ga0137378_102937893	3300012210	Vadose Zone Soil	LRKALIVLAAIVLAPVLVVSLVVLAASDWRTVGQTEAGDKVSVSSVRVLKNNQRIA
Ga0137385_110694332	3300012359	Vadose Zone Soil	LPFVLGKPQQLKKAIIVLAAVVLAPLLVVSLVLAAGDWRSIGQTEAGHKVSVSSIRVLKNNQRLALVRIEFKEPTDL
Ga0164298_102532331	3300012955	Soil	LKKALLIAVVVLAPVLAVSMLLAAGDWRTIGQTESGHKVSVSAVRVLKNNQRTALVR
Ga0126369_120135131	3300012971	Tropical Forest Soil	LKKKPLLIIAVVLAPVLAVSLLSAAGEWRTIGQTEAGDKVSVSAVRVLKNNQRSALVRVEFKEPTQLPQGGPFV
Ga0164305_107062191	3300012989	Soil	LKKALLIAVVVLAPVLAVSMLLAAGDWRTIGQTESGHKVSVSAVRVLKNNQRTALVRVEYKEPTDLPQGGPFVEMRARVHFN
Ga0164305_113337921	3300012989	Soil	VCLVAVCAWETAALKKTIIVLAAVVLAPVLVVSLVLAAGDWNTIGQTEAGDKVSVSSVRILKNNQRLALVRIEYKEPAELPQGGP
Ga0182024_124415142	3300014501	Permafrost	LKKSLIVLGAVVLAPMLVVSLVVFAAGDWRTIGQTEAGDQVSVSSIRILKNNQRIA
Ga0132255_1017122062	3300015374	Arabidopsis Rhizosphere	LVLGKFALKKALLIFAAVVAPILIVTLVSAAGEWRTIGQTEAGDKVSVSSVRVLKNNQRSALVRVEYKEPAQLPQGGPFIEMRARVRFNCT
Ga0182033_110286462	3300016319	Soil	LKKALLIIAAVIAPILIVTLVRAAGEWQAIGQTESGDKISISSVRVLKNNQRSALVRVEYKEPS
Ga0182032_118498182	3300016357	Soil	VLGKFALKKLLLIIAVALAVVLVATFVLAAGEWRTIGQTEAGDKVSVSSVRVLRKNQRSALVRVEYKDPAHLPQGGPFVELRAR
Ga0182037_117737431	3300016404	Soil	LKKALLIIAAVIAPILIVTLVRAAGEWQAIGQTESGDKISISSVRVLKNNQRSALVRVEYKEPSQLPQGGPFVEMRARVRFNCTSGT
Ga0187802_102787771	3300017822	Freshwater Sediment	VCAIELLGKARHLKKALLILAAVVLAPVLVVSLAVLAAGDWRAIGQTEAGDTVSVSSVHVLKGNQRLALVRVE
Ga0187801_101669442	3300017933	Freshwater Sediment	VLQLAWGRFLLKKALVILAVVLASVLVVGFVRAAGDWRTVGQTEAGDTVSVSSVRVLKNNQRLALVRVDYKEPQALP
Ga0187801_101831842	3300017933	Freshwater Sediment	LKKALIVLTAVVLAPVLVVSLVAFAAGDWRTIGQTEAGDKVSVSSVRILKNNQRIALVRVEFK
Ga0187801_104015391	3300017933	Freshwater Sediment	MLPRAHSSVLHLAWGRFALKKALLIFAVALASVLVVSLVRAAGDWRTIGQTEAGDTVSVSSVRVLKNNQRSALVRVEFKEPAALPQGGPFVEM
Ga0187778_113275102	3300017961	Tropical Peatland	MAHSSGLQIGAREFALKKVLLILAIGLAPVVVVSLVLAAGEWHVIGQTEAGDKVSVSAVRVLKNHQRTALVRVEYKEPAELPQGGPFVEMR
Ga0187783_113484791	3300017970	Tropical Peatland	LGKPGVKKALLIFAAVVLAPLVVVSLVALAASDWRAVGETSTGDKVSVSSVHVIKRNQRIALVRVEYKQPTELPQGGPFVEMRARVRFDCS
Ga0187781_113324471	3300017972	Tropical Peatland	LKKALIILAAVALAPVVVVNLVLAAGEWRTIGQTASGDTVSVSSIRVLKNNQRTALVRVE
Ga0187782_108710292	3300017975	Tropical Peatland	LKKALIILAAVALAPVVVVNLVLAAGEWRTIGQTASGDTVSVSSIRVLKNNQRTALVRVEYKEPAQLPQG
Ga0187782_111133631	3300017975	Tropical Peatland	LKKALLIFVAVGLAVLLVSAVVRAAGEWRTIGQTEAGDKVSISSVHVLKSNQRIALVRVEYKEPASLPQGG
Ga0187782_115389951	3300017975	Tropical Peatland	LLARAERRWRTENTLKKGLFIVVVVGLAPVLLAGLVAAAAGDWQPIGATAAGDKVSVSSVRVQKHNLRTAWVRVEYKEPAKLPQGGPFA
Ga0187767_103785791	3300017999	Tropical Peatland	LRLGKVALKKVLIILAAVVLAPVLLVSLGVRAAGDWRTIGQTQAGDTVSVSSVRLLKSNQRVALVRVEYKEPTKVPQG
Ga0187810_101486821	3300018012	Freshwater Sediment	LKKALLILCAVVLAPVLVVSLVVLAAGDWRSIGQTEAGDKVSVSSVHVLKGNQRLALVRVEYKEPTQLPQGGPFIEM
Ga0187855_101529531	3300018038	Peatland	LGLPLAWDFAPLKKALLIVAAVALTPLLVVSLVLAAGDWRTIGQTEAGDTVSVSSVRVLKGNQRTALVRVEYKAPAELPQGGLFVEMRARV
Ga0187859_109291412	3300018047	Peatland	VAVLAAVVLAPVLVVSLVAFAAGDWRTVGQTEAGDKVSVSSVRVLRNNQRLALVRVEYKEPAELPQGGPFVEMRARVR
Ga0187784_100512811	3300018062	Tropical Peatland	VKKTLLLLGVALAPVLVVKLVLASGDWRAIGQTQAGDKVSVSAVHVLKAGQRTALVRVQY
Ga0187772_105999101	3300018085	Tropical Peatland	MLVVSLAVLAASDWHPIGQTDAGDKVSVSSIHALKHNQRVALVRVEYKEPTELPQGGPFVEMRARV
Ga0187774_105845142	3300018089	Tropical Peatland	LKKALLILAAVVAPIVIVTLVRAAGEWQTIGQTEAGDRVSISSVHILKNNQRSALVRV
Ga0187770_109413371	3300018090	Tropical Peatland	LKKALLIFAAVALAVLVVRVVVRAAGEWRAVGQTAAGDTVSVSSVRVLKSNQRVALVRVEYKEPAKLPQGGPFVEMRARVRFNCASG
Ga0210403_103495913	3300020580	Soil	LKKALIVLAAIVLAPVLVVSLVVLAAGDWRAVGQTEAGDKVSVSSVRVLRNNQRVALVRVEYKDPAELPQGGPFVEMRAR
Ga0210401_112510842	3300020583	Soil	LKKALIVLAAIVLAPVLVVSLVVLAAGDWRAVGQTEAGDKVSVSSVRVLRNNQRVALVRVEYKDPAELPQGGPFVEMRARVRFNCTSGSAAPT
Ga0210408_102152753	3300021178	Soil	LKKALIVLAAIVLAPVLVVSLVVLAAGDWRTIGQTEAGDKVSVSSVRVLRNNQRVALVRVEYKDPAELPQGGPFVEMRARVRFNCSSGSA
Ga0210388_102822633	3300021181	Soil	LKKACIVLAAIVLAPVLVMSLVLMAASDWRPVGQTEAGDKVSVSSVRVLKNNQRLALVRVEYKDPAELPQGGPFVEMRARVRFNCASGGAAPT
Ga0210388_117434031	3300021181	Soil	LKKSCIVVAAITLVLGMSLVLRAASGWRPVGQTEAGDKVSVSSVRVLKNNQRLALVRVEFKEPAELPQGGPFVEMRARVRFNCVNGGAAPTT
Ga0210393_111329211	3300021401	Soil	LKKSLIIVGAVVLAPMLVVSLAVFAAGDWRTIGRSEAGDQVSVSSIRILKNNQRIALVRVEFKEPA
Ga0210389_107256161	3300021404	Soil	LKKALLIFAAVVLTPVLVVSLVLAAGDWRTIGQTEAGDTVSVSSVRVLKGNQRTALVRVEYKAPAELP
Ga0210386_116661842	3300021406	Soil	LKKACIVVAAIALVLGMSLVLRAASDWRPVGQTDAGDRVSVSSVRVLKNNQRLALVRVEFKEPAELPQGGPFVEMR
Ga0210384_103402303	3300021432	Soil	MAEVYPNTCPPSLRQLALKKALLILAAVVLVLVVSMAVRAAGEWRTIGQTGAGDTVSVSSIRVLKSNQRIALVRVEYREPA
Ga0210391_107513832	3300021433	Soil	VLVVSLVVLAAGDWRAIGLTEAGDKVSVSSIRVLKNNQRLALVRVEFKQPAELPQGGPFVEMRARVRFNCDSGAAVPTTE
Ga0126371_112104081	3300021560	Tropical Forest Soil	MALLIAVSLVRAAGDWRTIGQTEAGDTVSVSSVRALKNNQRVALVRVEYKEPAQLPGGPFVEMRARVRFN
Ga0126371_118120481	3300021560	Tropical Forest Soil	MFQSNPANLVLGKFALKKALLIIAAVIAPILIVTLVRAAGEWQTIGQTESGDRVSISSVHVLKNNQRSALVRV
Ga0126371_119688661	3300021560	Tropical Forest Soil	VGLKKALLILTAVVLTPVLVVSLALVAAGEWRNIGQTSAGDKVSISSVRVLKKNQRVALVRVEYKEAAKLPQGGPFVELRARVRFNCND
Ga0126371_123972322	3300021560	Tropical Forest Soil	LNKAFVIVAAVVLAPVIGANLARAAEDWRIIGQTANGDTVSISSVRILKNNQRTGLVRVEYKEPA
Ga0126371_134083362	3300021560	Tropical Forest Soil	LKKALIILAAVALAPAVVVNLLLAAGEWRTIGQTASGDTVSISSIRTLKTNQKTALVRVEYKEPAQLPQGGPFVEMRARVRI
Ga0213853_101351911	3300021861	Watersheds	LLLGKFALKKTLLLVFTVALATVLLVTFVRAAGEWQPIGQTEAGDKVSVSSVRVLKNNQRSALVRVEYKEP
Ga0207663_108226471	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MPPIPQSKGLQFPCGKQALKKALLIIAVVLTPVLAVSLLLAAGDWRAIGQTEAGDKVSIGAVRILKNNQRSALVRVEYKEPTKLPQ
Ga0209648_104827182	3300026551	Grasslands Soil	LLFALGKPQLLKKAFIVLAAIVLTPVLVVSLVLAAGDWRPIGETQAGDKISVSSVRVLRNNQRIA
Ga0208984_10541501	3300027546	Forest Soil	MAPVLLVSLVAFAAGDWHPVGETSTGAMVSVSSIRMLKNNQRTALVRVQYK
Ga0209528_11350212	3300027610	Forest Soil	VLVVSLVVLAAGDWRAIGLTEAGDKVSVSSIRVLKNNQRLALVRVEFKQPAELPQGGPFVEMRARVRFNCDSGAA
Ga0209656_104386531	3300027812	Bog Forest Soil	VCRLQFALGIRGESTALRKALIVLAVIVLAPVLVMSLVAFAAGDWRTVGQTEAGDKVSVSSVRVLRNNQRLALVRVEYKE
Ga0209580_106035102	3300027842	Surface Soil	LKKGLIVFAAVVLAPVLVVSLVVLAAGDWRTIGQTEAGDKVSVSSVRVLKSNQ
Ga0209517_102308823	3300027854	Peatlands Soil	LKKALIVLAAIVLAPVLVVSLVVLAAGDWRTIGQTEAGDTVSVSSVRILKNNQRLAL
Ga0209167_100250695	3300027867	Surface Soil	LGLCELKKAVFILIAVVLAPVVLVSVVAFAAGDWHAIGETGAGDRVSVSSLRVRNNQRTAWVRVEYKEPAELPQGGPFV
Ga0209465_101683021	3300027874	Tropical Forest Soil	VLGKFALKKALLIIAVALATVLMVTFVRAAGEWRAIGQTEAGDKIFVSAVRVLKNNQRSALVRVEYKEPAQLPQGGP
Ga0209067_101142203	3300027898	Watersheds	MALVLVVSLVVRAAGDWRSVGQTEAGDKVSVSSVRVLKNNQRLALVRVEYKEPAELPQGGPFVEMRARVRFNCDSGTAAPTS
Ga0209415_103876301	3300027905	Peatlands Soil	LKKALIILTAVVLAPVLVVSLVVFAAGDWRTIGQTETGDKVSVSSVRILKNNQRIALVRVEFKEPAELPQGGPFVEMRA
Ga0302226_102093651	3300028801	Palsa	MRVRNAREGSRLKRVFIVLTVIVLAPVLVMSLVAFAAGDWRTVGQTEAGDKVSVSSVRVLGNNQRVALVRVEYKEPAELPQGG
Ga0311369_108691202	3300029910	Palsa	MCYFFAWVWLTLKKALFALVAVVVAPVLLVSLMAFASGEWRPVGETGAGDEVSVSSVRVLKNNQRVAWVRVDYKDPAKLPQGGPFVELRARVRFG
Ga0302182_102237702	3300030054	Palsa	MRVRNAREGSRLKRVFIVLTVIVLAPVLVMSLVAFAAGDWRTVGQTEAGDKVSVSSVRVLGNNQRVALVRVEYKEPAELPQGGPF
Ga0310037_100829711	3300030494	Peatlands Soil	LRKALLIFAAVVLAPALLVSLAVLAAGDWRTIGQTGAGDTVSVSSVRVLKSNQRVALVRVEFKEPATFPQGGPFVEMRAR
Ga0265763_10139701	3300030763	Soil	VLVVSLVVLAAGDWRAIGLTEAGDKVSVSSIRVLKNNQRLALVRVEFKQPAELPQGGPFVEMRARVRFNC
Ga0265746_10348001	3300030815	Soil	VVLAPVLVFSVVVLAAGDWRAIGQTEAGDRISVSSVRVLKSNQRLALVRVEYKDPTRLPQGGPFVEMRARVRFNCTSGTAAPTTEW
Ga0170834_1116077532	3300031057	Forest Soil	LKKVLLALAVVVLTPIVVVTLLRAAGEWHTIGQTEAGDKVSVSSIHVLKNNQRTALVRVEYKSPADLPQGG
Ga0265760_103457351	3300031090	Soil	LKKTLIVFAVMAVVLVVSLAVRAAGDWRTIGQTEAGDKVSVSSVRVLKNNQRLALVRIEYKDPAELPQGGPFVEMRARVRFNCSS
Ga0170824_1038082192	3300031231	Forest Soil	VLTPILVVSLLLASGEWRSIGQTEAGDKISVSSVRVLKGNQRMALVRVEYKEPAKLPQGGPFVEMRARVRFNCTSGIAAP
Ga0265340_102332751	3300031247	Rhizosphere	LKKAIIVLALVVLTPVLVVTMVLAAGDWRTIGQTEAGDTISVSSVRVLKNNQRMALVRVEYKEP
Ga0170818_1078922891	3300031474	Forest Soil	VLTPILVVSLLLASGEWRSIGQTEAGDKISVSSVRVLKGNQRMALVRVEYKEPAKLPQGGPFVEMRARVRFNCASGAAAP
Ga0265342_106400201	3300031712	Rhizosphere	LKKAIIVLALVVLTPVLVVTMVLAAGDWRTIGQTEAGDTISVSSVRVLKNNQRMALVRVEYKEPAELPQGGPFVEMRARVRFNCSSG
Ga0307474_105191571	3300031718	Hardwood Forest Soil	MVTFVLAAGEWRVIGQTEAGDKVSVSSVRVLKNNQRSALVRVEYKDPAQLPQGGPFVEM
Ga0318511_106326081	3300031845	Soil	LKKALLILAVAFATVLLVTFVRAAGEWQQIGQTEAGDKVSVSSVRVLRKNQRSALVRVEYKDPAHLPQGGPFVELRARVRFN
Ga0310916_110099701	3300031942	Soil	LKKALLIIAAVIAPILIVTLVRAAGEWQAIGQTESGDKISISSVRVLKNNQRSALV
Ga0310910_102868283	3300031946	Soil	MAQSSAANWCLGKFALKKALLILAVVLASLVVVSLVVAAGEWRSIGQTEAGDKVSVSSVRIMKNNQRMALVRVEYKEPAEL
Ga0307471_1004887643	3300032180	Hardwood Forest Soil	MPQSSACKLLLGKFALKKALLLILAVVFATVLMVTFVRAAGEWRTIGQTEAGDNVSVSSVRVLKNNQR
Ga0307471_1006611761	3300032180	Hardwood Forest Soil	LRKALIVLAAIVLAPVLVVSLVVLAASDWRTVGQTEAGDKVSVRSDRVLKNNQRIALVRVEYKEPAELPQGGPFVEMRARVRFNCSI
Ga0307472_1001290713	3300032205	Hardwood Forest Soil	LKKTLPLIFAVVLATVLMVTFVRAAGEWQTIGQTEAGDKVSVSSVRVLKNNQRSALVRVEYKDPAQL
Ga0306920_1039458372	3300032261	Soil	LALGKFALKKLLLIIAVALAVVLVATFVLAAGEWRTIGQTEAGDKVSVSAVRVLKNNQRSALVRVEYKDPAQ
Ga0335081_110545771	3300032892	Soil	MAQSRACKFVLGKFALKKALLILAVALVTVLLVTFVRAAGEWHSIGQTNAGDKISVSAVRVLKNNQRSALVRVEYKDPTELPQGGPFV
Ga0335077_102824903	3300033158	Soil	MPAMAHSGGLQFGRKRFALKKALLILAAVILAPILLVSLVRAAGDWRTIGQTEAGDTVSVSSVRVLKNNQRVALVRVEYKEPAALPQGGPFVEMRARVR
Ga0335077_105613631	3300033158	Soil	LKKGLLILAVVVLAPILVVGLLLAAGDWKSIGQTASGDKVSISSVRVLKNNQRTALVRVEYKTPAELPQGGPFV
Ga0334792_048999_1137_1319	3300033888	Soil	LKKALIVFAVMALVLVVSLVVRAAGDWRTVGRTEAGDKVSVSSVRVLKNNQRLALVRVEY

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F060370

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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