Metagenome Family F060390

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F060390
Family Type	Metagenome
Number of Sequences	133
Average Sequence Length	47 residues
Representative Sequence	RVLPSLSAAQRENVRATLEVYFKGHATSQGVVLPAANWVVRARV
Number of Associated Samples	94
Number of Associated Scaffolds	133

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	9.02 %
% of genes near scaffold ends (potentially truncated)	94.74 %
% of genes from short scaffolds (< 2000 bps)	94.74 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (50.376 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (55.639 % of family members)
Environment Ontology (ENVO)	Unclassified (71.429 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (54.135 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.33% β-sheet: 0.00% Coil/Unstructured: 66.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 133 Family Scaffolds
PF11799	IMS_C	61.65
PF00296	Bac_luciferase	6.02
PF00893	Multi_Drug_Res	4.51
PF07366	SnoaL	2.26
PF08881	CVNH	2.26
PF08241	Methyltransf_11	0.75
PF00805	Pentapeptide	0.75
PF05981	CreA	0.75
PF08521	2CSK_N	0.75
PF13561	adh_short_C2	0.75
PF11798	IMS_HHH	0.75
PF07978	NIPSNAP	0.75
PF13432	TPR_16	0.75
PF14535	AMP-binding_C_2	0.75
PF06627	DUF1153	0.75
PF13751	DDE_Tnp_1_6	0.75
PF04542	Sigma70_r2	0.75
PF00817	IMS	0.75

COG ID	Name	Functional Category	% Frequency in 133 Family Scaffolds
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	6.02
COG2076	Multidrug transporter EmrE and related cation transporters	Defense mechanisms [V]	4.51
COG0389	Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair	Replication, recombination and repair [L]	0.75
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.75
COG0642	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.75
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.75
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	0.75
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.75
COG3045	Periplasmic catabolite regulation protein CreA (function unknown)	Signal transduction mechanisms [T]	0.75
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.75

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	50.38 %
Unclassified	root	N/A	49.62 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	50.38 %
Unclassified	root	N/A	49.62 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	50.38 %
Unclassified	root	N/A	49.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.62 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	39.10 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.62 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	36.09 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.75 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.62 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	12.78 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	9.02 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	5.26 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.75 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.62 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	8.27 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.26 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.76 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.75 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.75 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.75 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.62 %
Dankookia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Dankookia	8.27 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.26 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.76 %
Sinorhizobium/Ensifer group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group	0.75 %
Methylocapsa	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa	0.75 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.75 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.62 %
Dankookia rubra	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Dankookia → Dankookia rubra	8.27 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.26 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.76 %
Methylocapsa palsarum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa palsarum	0.75 %
Sinorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium	0.75 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.75 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.62 %
Dankookia rubra	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Dankookia → Dankookia rubra	8.27 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.26 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.76 %
Sinorhizobium meliloti	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium → Sinorhizobium meliloti	0.75 %
Methylocapsa palsarum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa palsarum	0.75 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.75 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.75 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003368\|JGI26340J50214_10105557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	720	Open in IMG/M
3300004082\|Ga0062384_100141495	All Organisms → cellular organisms → Bacteria → Proteobacteria	1351	Open in IMG/M
3300005181\|Ga0066678_10257366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium → Sinorhizobium meliloti	1131	Open in IMG/M
3300005332\|Ga0066388_100428630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1966	Open in IMG/M
3300005574\|Ga0066694_10204205	Not Available	938	Open in IMG/M
3300005576\|Ga0066708_10269865	Not Available	1085	Open in IMG/M
3300005764\|Ga0066903_108744971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Dankookia → Dankookia rubra	514	Open in IMG/M
3300006028\|Ga0070717_11434864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	627	Open in IMG/M
3300006163\|Ga0070715_10316374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	841	Open in IMG/M
3300006176\|Ga0070765_100277136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1544	Open in IMG/M
3300007788\|Ga0099795_10142280	Not Available	976	Open in IMG/M
3300007788\|Ga0099795_10273898	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	735	Open in IMG/M
3300010048\|Ga0126373_12823882	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300010159\|Ga0099796_10432545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	582	Open in IMG/M
3300010326\|Ga0134065_10265941	Not Available	645	Open in IMG/M
3300010358\|Ga0126370_11422964	Not Available	656	Open in IMG/M
3300010361\|Ga0126378_11443052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	780	Open in IMG/M
3300010361\|Ga0126378_12557168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Dankookia → Dankookia rubra	583	Open in IMG/M
3300010366\|Ga0126379_13091656	Not Available	557	Open in IMG/M
3300010376\|Ga0126381_102279885	All Organisms → cellular organisms → Bacteria	778	Open in IMG/M
3300010376\|Ga0126381_102394855	Not Available	757	Open in IMG/M
3300010376\|Ga0126381_102598004	Not Available	725	Open in IMG/M
3300010376\|Ga0126381_103808085	Not Available	589	Open in IMG/M
3300012685\|Ga0137397_11161082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	559	Open in IMG/M
3300012915\|Ga0157302_10275360	Not Available	642	Open in IMG/M
3300012923\|Ga0137359_10273481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1506	Open in IMG/M
3300016270\|Ga0182036_11269478	Not Available	614	Open in IMG/M
3300016294\|Ga0182041_10395131	All Organisms → cellular organisms → Bacteria	1175	Open in IMG/M
3300016294\|Ga0182041_11548539	Not Available	611	Open in IMG/M
3300016319\|Ga0182033_10255011	Not Available	1427	Open in IMG/M
3300016357\|Ga0182032_10801774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	796	Open in IMG/M
3300016387\|Ga0182040_10929770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	722	Open in IMG/M
3300016387\|Ga0182040_11214618	Not Available	634	Open in IMG/M
3300016445\|Ga0182038_10852984	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300018058\|Ga0187766_10584401	Not Available	761	Open in IMG/M
3300018062\|Ga0187784_11212237	Not Available	599	Open in IMG/M
3300021178\|Ga0210408_10925593	Not Available	677	Open in IMG/M
3300021401\|Ga0210393_11043024	Not Available	661	Open in IMG/M
3300021478\|Ga0210402_11664555	All Organisms → cellular organisms → Bacteria → Proteobacteria	565	Open in IMG/M
3300021560\|Ga0126371_11352492	Not Available	844	Open in IMG/M
3300021560\|Ga0126371_12349677	Not Available	644	Open in IMG/M
3300025922\|Ga0207646_11524245	Not Available	578	Open in IMG/M
3300026078\|Ga0207702_11648716	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Dankookia → Dankookia rubra	634	Open in IMG/M
3300027729\|Ga0209248_10226680	Not Available	548	Open in IMG/M
3300027795\|Ga0209139_10104184	All Organisms → cellular organisms → Bacteria	999	Open in IMG/M
3300031446\|Ga0170820_12310075	Not Available	969	Open in IMG/M
3300031545\|Ga0318541_10004547	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5731	Open in IMG/M
3300031561\|Ga0318528_10121960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1378	Open in IMG/M
3300031561\|Ga0318528_10334404	All Organisms → cellular organisms → Bacteria	813	Open in IMG/M
3300031561\|Ga0318528_10343463	Not Available	801	Open in IMG/M
3300031561\|Ga0318528_10523235	Not Available	637	Open in IMG/M
3300031564\|Ga0318573_10209930	Not Available	1033	Open in IMG/M
3300031564\|Ga0318573_10219121	Not Available	1011	Open in IMG/M
3300031572\|Ga0318515_10311765	Not Available	844	Open in IMG/M
3300031573\|Ga0310915_10423763	Not Available	945	Open in IMG/M
3300031573\|Ga0310915_10666439	Not Available	735	Open in IMG/M
3300031573\|Ga0310915_11126988	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Dankookia → Dankookia rubra	544	Open in IMG/M
3300031640\|Ga0318555_10670169	Not Available	561	Open in IMG/M
3300031668\|Ga0318542_10365991	Not Available	742	Open in IMG/M
3300031679\|Ga0318561_10116691	Not Available	1415	Open in IMG/M
3300031679\|Ga0318561_10275422	Not Available	919	Open in IMG/M
3300031681\|Ga0318572_10297309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	954	Open in IMG/M
3300031682\|Ga0318560_10781321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Dankookia → Dankookia rubra	516	Open in IMG/M
3300031682\|Ga0318560_10812288	Not Available	505	Open in IMG/M
3300031713\|Ga0318496_10324802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	850	Open in IMG/M
3300031719\|Ga0306917_10813765	Not Available	732	Open in IMG/M
3300031719\|Ga0306917_10832915	Not Available	723	Open in IMG/M
3300031719\|Ga0306917_11098070	Not Available	619	Open in IMG/M
3300031724\|Ga0318500_10362988	Not Available	716	Open in IMG/M
3300031724\|Ga0318500_10515116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	602	Open in IMG/M
3300031744\|Ga0306918_10862479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	706	Open in IMG/M
3300031747\|Ga0318502_10556754	Not Available	689	Open in IMG/M
3300031751\|Ga0318494_10600208	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300031763\|Ga0318537_10249398	Not Available	658	Open in IMG/M
3300031764\|Ga0318535_10115691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1182	Open in IMG/M
3300031764\|Ga0318535_10267032	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Dankookia → Dankookia rubra	766	Open in IMG/M
3300031765\|Ga0318554_10262144	Not Available	984	Open in IMG/M
3300031765\|Ga0318554_10545143	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300031765\|Ga0318554_10552665	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300031765\|Ga0318554_10740581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	551	Open in IMG/M
3300031768\|Ga0318509_10057432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2003	Open in IMG/M
3300031768\|Ga0318509_10861436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	501	Open in IMG/M
3300031770\|Ga0318521_10949609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	526	Open in IMG/M
3300031777\|Ga0318543_10408610	Not Available	608	Open in IMG/M
3300031780\|Ga0318508_1008637	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2238	Open in IMG/M
3300031781\|Ga0318547_10141366	All Organisms → cellular organisms → Bacteria	1409	Open in IMG/M
3300031782\|Ga0318552_10633380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Dankookia → Dankookia rubra	545	Open in IMG/M
3300031797\|Ga0318550_10031871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2273	Open in IMG/M
3300031819\|Ga0318568_10857686	Not Available	562	Open in IMG/M
3300031832\|Ga0318499_10426592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	506	Open in IMG/M
3300031833\|Ga0310917_10084969	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2012	Open in IMG/M
3300031833\|Ga0310917_10879632	Not Available	603	Open in IMG/M
3300031880\|Ga0318544_10150841	Not Available	891	Open in IMG/M
3300031890\|Ga0306925_11072511	Not Available	816	Open in IMG/M
3300031890\|Ga0306925_11838774	Not Available	578	Open in IMG/M
3300031894\|Ga0318522_10215508	Not Available	727	Open in IMG/M
3300031897\|Ga0318520_10962811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Dankookia → Dankookia rubra	538	Open in IMG/M
3300031910\|Ga0306923_11007365	Not Available	904	Open in IMG/M
3300031910\|Ga0306923_11641755	Not Available	666	Open in IMG/M
3300031910\|Ga0306923_12137908	Not Available	563	Open in IMG/M
3300031912\|Ga0306921_10331986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1779	Open in IMG/M
3300031942\|Ga0310916_10515407	Not Available	1018	Open in IMG/M
3300031942\|Ga0310916_10831635	Not Available	776	Open in IMG/M
3300031942\|Ga0310916_10909968	Not Available	737	Open in IMG/M
3300031945\|Ga0310913_10140707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1661	Open in IMG/M
3300031947\|Ga0310909_11010332	Not Available	679	Open in IMG/M
3300031947\|Ga0310909_11540635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Dankookia → Dankookia rubra	528	Open in IMG/M
3300031954\|Ga0306926_11104601	Not Available	937	Open in IMG/M
3300031954\|Ga0306926_11482874	Not Available	783	Open in IMG/M
3300031959\|Ga0318530_10204818	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300032001\|Ga0306922_11028712	Not Available	848	Open in IMG/M
3300032010\|Ga0318569_10478860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	580	Open in IMG/M
3300032035\|Ga0310911_10623496	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300032041\|Ga0318549_10455325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	576	Open in IMG/M
3300032042\|Ga0318545_10002402	All Organisms → cellular organisms → Bacteria → Proteobacteria	5004	Open in IMG/M
3300032044\|Ga0318558_10151766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa palsarum	1115	Open in IMG/M
3300032052\|Ga0318506_10190723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	903	Open in IMG/M
3300032052\|Ga0318506_10283522	Not Available	734	Open in IMG/M
3300032055\|Ga0318575_10019357	All Organisms → cellular organisms → Bacteria	2825	Open in IMG/M
3300032059\|Ga0318533_11299845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	531	Open in IMG/M
3300032059\|Ga0318533_11309907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Dankookia → Dankookia rubra	529	Open in IMG/M
3300032060\|Ga0318505_10263942	Not Available	811	Open in IMG/M
3300032060\|Ga0318505_10450616	Not Available	608	Open in IMG/M
3300032068\|Ga0318553_10448744	Not Available	676	Open in IMG/M
3300032068\|Ga0318553_10591916	Not Available	581	Open in IMG/M
3300032076\|Ga0306924_10518481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1356	Open in IMG/M
3300032076\|Ga0306924_10549950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1310	Open in IMG/M
3300032089\|Ga0318525_10702393	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Dankookia → Dankookia rubra	514	Open in IMG/M
3300032090\|Ga0318518_10244847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	920	Open in IMG/M
3300032090\|Ga0318518_10442356	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300032090\|Ga0318518_10451648	Not Available	658	Open in IMG/M
3300032261\|Ga0306920_101890446	Not Available	839	Open in IMG/M
3300033289\|Ga0310914_11850354	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	508	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.25%
Host-Associated	Host-Associated	0.75%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.24%
Aquatic	Environmental → Aquatic	3.01%
Plants	Host-Associated → Plants	0.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.24%
Freshwater	Environmental → Aquatic → Freshwater	3.01%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	90.23%
Loam	Environmental → Terrestrial → Soil → Loam	4.51%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.01%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.50%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.75%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	74.44%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.53%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.01%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.26%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.26%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.26%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	55.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.05%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.27%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.76%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.01%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.26%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.26%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.75%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.75%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.75%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.75%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26340J50214_101055572	3300003368	Bog Forest Soil	VMVMGPLVRVLPSLSAAQRENVRATLEVYFKGHTTAQGVILPAAIWVVRARV*
Ga0062384_1001414952	3300004082	Bog Forest Soil	MALGPLMRVLPSLSAARRENVRATLEVYFKEHVTSQGVVFPAANWVVRARV*
Ga0066678_102573663	3300005181	Soil	RVLPSLSAAQRENVRATLEVYFKGHATSQGVTLPAANWVVRARV*
Ga0066388_1004286303	3300005332	Tropical Forest Soil	MVVGPLVRVLPSLSAAERANVRATLEVYFRGHTTSQGVVLPVEIWVVRARI*
Ga0066694_102042051	3300005574	Soil	RVLPSLSAAERENVRATLEVYFRGHAASQGIVLPAEIWVARARV*
Ga0066708_102698652	3300005576	Soil	LSAAERENVRATLEVYFRGHAASQGIVLPAEIWVARARV*
Ga0066903_1087449711	3300005764	Tropical Forest Soil	LPSLSAAQRENVRAVLEFYFKGHATSQGVVLPAAIWVVRARV*
Ga0070717_114348642	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	QRENVRATLEVYFKGHATPQGVVLPAANWVVRARV*
Ga0070715_103163741	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	IGPLVRVLPSLSAAERESVRATLEVYFRGHAASQGVVLPAEIWVVRARV*
Ga0070765_1002771362	3300006176	Soil	QRDAVRSALEIFFQGHTASQGIVLPAANWVVRARV*
Ga0099795_101422801	3300007788	Vadose Zone Soil	RKNVRATLEAYFRGQAALQGVVLPAEIWVVRARV*
Ga0099795_102738981	3300007788	Vadose Zone Soil	ILPALTAPQRDAVRWAIEVFFQGHTTSQGVVLPAANWVVRARV*
Ga0126373_128238822	3300010048	Tropical Forest Soil	MAMGPLARVPPSLSAAQRENVRTTLEVYFRGHTSAEDVVLPAEIWVV
Ga0099796_104325451	3300010159	Vadose Zone Soil	PLVRVLPSLSAAARENVRATLEVYFRGHAASQGVVLPAEIWVVRARV*
Ga0134065_102659412	3300010326	Grasslands Soil	PSLSAAQRENVRATLEVYFKGHATSQGVTLPAANWVVRARV*
Ga0126370_114229641	3300010358	Tropical Forest Soil	EAADFVMVMGPLVWVLPSLSTAQWANVRATLEVYFRGHTTSQGVVLPAEIWVVRARV*
Ga0126378_114430521	3300010361	Tropical Forest Soil	DFVMAMGPLMRVLPSLSAAQRENVRAVLEVYFKRHATSQGVGLPAANWVVRARV*
Ga0126378_125571682	3300010361	Tropical Forest Soil	GPLMRVLPSLSAAQRENVRATLEVYFKRHATSEGVGLPAANWVVRARV*
Ga0126379_130916561	3300010366	Tropical Forest Soil	MAMGPLMRVLPSLSAAQRENVRAVLEVYFKGHATSQGIVLPAAIWVVRARV*
Ga0126381_1022798851	3300010376	Tropical Forest Soil	MVMGPLVRVLPSLSAAQRENVRATLEVYFRGHTTSQGVVLPAAN
Ga0126381_1023948551	3300010376	Tropical Forest Soil	MGIGVLPGLPAAERENVRATLEVYFRAHATLQGVVLPAANWVVRARV*
Ga0126381_1025980041	3300010376	Tropical Forest Soil	AQREKVRATLEAYFKGHATSQGVVLPAANWVVRARV*
Ga0126381_1038080852	3300010376	Tropical Forest Soil	RVLPSLSAAQRENVRAVLEVYFKGHATSQGIVLPAAIWVVRARV*
Ga0137397_111610822	3300012685	Vadose Zone Soil	VMMMGPLMRVLPSLSAAERDNVRATLEVYFRGHTASQGVVLPAEIWVVRARV*
Ga0157302_102753601	3300012915	Soil	DFVMAMGPLARVLPSLSAAQRENVRATLEVYFKGHATSQGVTLPAANWAVRARV*
Ga0137359_102734814	3300012923	Vadose Zone Soil	MTLGPLTRVLPALSAPQREAVRAALEVYFQKFTRSQGVFLPAANWVVQARV*
Ga0182036_112694781	3300016270	Soil	PLARVLPGLAAEQRENVRENLEVYFKGHTTSQGVLLPAANWVVQARV
Ga0182041_103951312	3300016294	Soil	DFVIVLGPLARVLPGLSAAQREKVRENLEVYLKGHTTSEGVVLPAANWVVQARA
Ga0182041_115485391	3300016294	Soil	LSAAQRENVRAALEVYFKGHATSQGVVLPAANWVVRARV
Ga0182033_102550112	3300016319	Soil	FVMAMGPLARVLPSLSAAQRDNVRATLEVYFKGHTTSHGVVLPAANWVVRACV
Ga0182032_108017743	3300016357	Soil	EATDFVMAMGPLTRVLPSLSATQREKVRETLGTYFKGHTTPQGVVLPAEIWVVRARV
Ga0182040_109297703	3300016387	Soil	LARSGGEAHATDFVMAIGALTRVLPSLSATQREKVRETLGTYFKGHTTPQGVVLPAEIWVVRARV
Ga0182040_112146181	3300016387	Soil	AADFVMAIGPLMRVLPSLSAAQRENVRATLEVYLKGHATSQGVTLPTEIWVVRARV
Ga0182038_108529841	3300016445	Soil	EAADFVMAMGPLMRVLPSLSAAQRENVRATLEVYFKGHATSQGVVLPAANWVVRARV
Ga0187766_105844012	3300018058	Tropical Peatland	LSGAQRENVRATLEVYFKGHATSQGVVLPAEIWVVRGHV
Ga0187784_112122371	3300018062	Tropical Peatland	LMRVLPSLSAAQRENVREALEVYFKEHFTSQGVVLPAANWVVRARV
Ga0210408_109255931	3300021178	Soil	SLPALPAPQRDAVRSALEIFFQGHTASQGIVLPAANWVVRARV
Ga0210393_110430241	3300021401	Soil	PAGEEAADFVMAMGPLMRVLPSLSAAQRENVRATLEVYFKGHATPQGVVLPAANWVVRAR
Ga0210402_116645552	3300021478	Soil	QPRRRTSFMVLGPLTRVLPALSAPQREAVRAALEIYFQKYARPQGVFLPAANWVVRARV
Ga0126371_113524921	3300021560	Tropical Forest Soil	LPSLSAAQRENVRATLEVYFKGHATSQGVVLPAANWVVRARI
Ga0126371_123496772	3300021560	Tropical Forest Soil	ADFVMAMGPLMRVLPSLSAAQRENVRAILEVYFKGHATSEGVVLPAANWVVRARV
Ga0207646_115242451	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	TAERQNVRATLEVYFKGHAASQGVVLPAEIWVVRARV
Ga0207702_116487162	3300026078	Corn Rhizosphere	EAADFVMAMGPLARVLPSLSAAQRENVRATLEVYFKGHATPQGVVVPAANWVVRARV
Ga0209248_102266801	3300027729	Bog Forest Soil	QRENVRATLEVYFKGHTTAQGVILPAAIWVVRARV
Ga0209139_101041841	3300027795	Bog Forest Soil	MMLFGPLTRVLPTLPGPQREAVRSALEVFFEGQTTSQGVVLPAANWVVRARV
Ga0170820_123100751	3300031446	Forest Soil	GWTSRGKAGLADYVMLMGPLVRVLPSLSAAARENVRATLEVYFRGQAGSQGIVLPAEIWVVRARV
Ga0318541_100045476	3300031545	Soil	MVMGPLVRVLPSLSAAERANVRATLEVYFRGHTTSQGVVLPVEIWVVRARI
Ga0318528_101219602	3300031561	Soil	MVMGPLVRVLPSLSTAQRADVRATLEVYFKGHTTSQGVVLPAEIWVVRALM
Ga0318528_103344042	3300031561	Soil	VMAMGPLVRVLPSLSAAQRENVRAALEVYFKGHATSQGVVFPAANWVVRALVF
Ga0318528_103434631	3300031561	Soil	AADFVMAMGPLARVLPSLSAAQRENVRATLEVYFRGHATSQGVVLPAANWVVQARV
Ga0318528_105232352	3300031561	Soil	PLARVLPALSAAQREKVCENLEVYFKAHTTSQGVVLPAANWVVRAHV
Ga0318573_102099301	3300031564	Soil	MVMGPLVRVLPSLSTAQRADVRATLEVYFKGHTTSQGVVLPAEIW
Ga0318573_102191211	3300031564	Soil	EAADFVMAMGPLARVLPSLSAAQRDNVRATLEVYFKGHTTSHGVVLPAANWVVRACV
Ga0318515_103117651	3300031572	Soil	AGEAEAVDFVMAMGPLMRVLPGLSATEREDIRATLEVYFKAHATSQGVVLPAEIWVVRAR
Ga0310915_104237631	3300031573	Soil	GLSATEREDIRATLEVYFKAHATSQGVVLPAEIWVVRARA
Ga0310915_106664391	3300031573	Soil	RVLPSLSAAQRENVRATLEVYFRGHATSQGVVLPAANWVVQARV
Ga0310915_111269881	3300031573	Soil	MAMGPLARVLPSLSAAQRENVRAVLEVYFKGHATSQGVVLPAANWVVRARV
Ga0318555_106701692	3300031640	Soil	LSVAQRENVRTTLEVYFKGHATSQGVVLPATNWVVRARV
Ga0318542_103659911	3300031668	Soil	LSTAQRESVRATLEFYFRGHATSQGVVLPAANWVVRARV
Ga0318561_101166911	3300031679	Soil	LSTAQRESVRATLEVYFRGHATSQGVVLPAANWVVRARV
Ga0318561_102754223	3300031679	Soil	AAERANVRATLEVYFRGHTTSQGVVLPVEIWVVRARI
Ga0318572_102973093	3300031681	Soil	PSGEAEAANFVMAMGPLMRVLWSLSAAQREKVRQTLEAYFKGHTTPQGVVLPAEIWVVRARV
Ga0318560_107813211	3300031682	Soil	LPRLSAAQRENVRATLEVYFKGHTTSQGVILPAANWVARARV
Ga0318560_108122881	3300031682	Soil	VMVLGPLARALPSLSAAQREKVRENLEVYFKGHTTSEGVVLPAANWVVQARA
Ga0318496_103248023	3300031713	Soil	MGPLMRVLWSLSAAQREKVRQTLEAYFKGHTTPQGVVLPAEIWVVRARV
Ga0306917_108137652	3300031719	Soil	FVMAMGPLVRVLPSLSAEQRENVRTTLEVYFKGHATSQGVVLPATNWVVRARV
Ga0306917_108329151	3300031719	Soil	RVLPSLSAAERETVRATLEVYFRGHAASQGVVLPAEVWVVRARV
Ga0306917_110980702	3300031719	Soil	LPSLSAAQHENVRATLEVYFKAHATSQGVVLPAANWVVRARV
Ga0318500_103629881	3300031724	Soil	PSLSTAQRESVRATLEVYFRGHATSQGVVLPAANWVVRARV
Ga0318500_105151161	3300031724	Soil	VMALGPLARVLPGISAAQREEVRANLEVYFKGHASSQGVVLPAANWIVRARV
Ga0306918_108624791	3300031744	Soil	PSLSEVQLDKVRATLEAYFKGHTRPQGVILPTEIWVVRARV
Ga0318502_105567542	3300031747	Soil	EAEPAYFVMVMGPLVRVLPSLSAAERANVRATLEVYFRGHTTSQGVVLPVEIWVVRARI
Ga0318494_106002082	3300031751	Soil	EAEEADFVMVMGPLVRVLPNLSAAQRENVRATLEVYFRGHAASQGIVLPAEIWVVRARV
Ga0318537_102493982	3300031763	Soil	PLARVLPSLSTAQRESVRATLEFYFRGHATSQGVVLPAANWVVRARV
Ga0318535_101156911	3300031764	Soil	DFVMAMGPLTRVLPSLSATQREKVRETLGTYFKGHTTPQGVVLPAEIWVVRARV
Ga0318535_102670321	3300031764	Soil	ERENVRATLEVYFRGHAAPHGIVLPAEIWVVRARV
Ga0318554_102621441	3300031765	Soil	VMAMGPLMRVLPSLSAAQRENVRATLEVYFKGHTTSQGVVLPAANWVVRARV
Ga0318554_105451431	3300031765	Soil	MRVLPSLSAAQRENVRATLEVYFKGHATSQGVVLPAANWVVRARV
Ga0318554_105526651	3300031765	Soil	PSLSAAQRENVRATLEVYFKGHATSQGVVLPAANWVVRARV
Ga0318554_107405813	3300031765	Soil	LMRVLWSLSAAQREKVRQTLEAYFKGHTTPQGVVLPAEIWVVRARV
Ga0318509_100574321	3300031768	Soil	LPSLSTAQRESVRATLEFYFRGHATSQGVVLPAANWVVRARV
Ga0318509_108614361	3300031768	Soil	AAQRENVRATLEVYFKGHATSQGVVLPAANWVVRARV
Ga0318521_109496092	3300031770	Soil	VRVLPSLSARQRENVRAALEVYFKGHATSQGVVLPAAIWLVRARV
Ga0318543_104086101	3300031777	Soil	MVMGPLVRVLPSLSTAQRADVRATLEVYFKGHTTSQGVVLPVEIWVVR
Ga0318508_10086373	3300031780	Soil	LPSLSAAQRENVRATLEVYFKGHTTSQGVVLPAANWVVRARV
Ga0318547_101413661	3300031781	Soil	ADFVMVMGPLVRVLPSLSAAERANVRATLEVYFRGHTTSQGVVLPVEIWVVRARI
Ga0318552_106333801	3300031782	Soil	ADFVMVMGPLMRVLPSLSAAERENVRAPLEVYFRGHAAPHGIVLPAEIWVVRARV
Ga0318550_100318711	3300031797	Soil	SAAQRENVRATLEVYFKGHATSQGVVLPAANWVVRARV
Ga0318568_108576862	3300031819	Soil	LSAAQRENVRAALEVYFKGHATSQGVVFPAANWVVRALV
Ga0318499_104265922	3300031832	Soil	AEAANFVMAMGPLMRVLWSLSAAQREKVRQTLEAYFKGHTTPQGVVLPAEIWVVRARV
Ga0310917_100849691	3300031833	Soil	SPSLSAADRENVRATLAVYFGGHAASQGIVLPAEIWVVRARV
Ga0310917_108796322	3300031833	Soil	MRVLPSLSAEQRENVRTTLEVYFKGHATSQGVVLPATNWVVRARV
Ga0318544_101508411	3300031880	Soil	VLPSLSAAERANVRATLEVYFRGHTTSQGVVLPVEIWVVRARI
Ga0306925_110725111	3300031890	Soil	RVLPSLSAAQRENVRATLEVYFKGHATSQGVVLPAANWVVRARV
Ga0306925_118387742	3300031890	Soil	SLSAAQRENVRASLEVYFRGHATSQGVVLPAAIWVVRARV
Ga0318522_102155081	3300031894	Soil	PLMRVLPRLSAAQRENVRATLEVYFKGHTTSQGVILPAANWVARARV
Ga0318520_109628112	3300031897	Soil	LPSLSVAQRENVRTTLEVYFKGHATSQGVVLPATNWVVRARV
Ga0306923_110073651	3300031910	Soil	PSLSAAQRENVRAALEVYFKGHATSQGVVLPAANWVVRARV
Ga0306923_116417551	3300031910	Soil	GPLMRVLPSLSAEQRENVRTTLEVYFKGHATSQGVVLPAANWVVRARV
Ga0306923_121379081	3300031910	Soil	QRENVRATLEVYFKGHTTSQGVILPAANWVARARV
Ga0306921_103319865	3300031912	Soil	QLDKVRATLEAYFKGHTRPQGVILPTEIWVVRARV
Ga0310916_105154072	3300031942	Soil	MRVLPSLSAAQHENVRATLEVYFKAHATSQGVVLPAANWVVRARV
Ga0310916_108316352	3300031942	Soil	EAANFVMAMGPLARVLPSLSAAQRENVRATLEVYFKGHTTSQGVILPTANWVVRARV
Ga0310916_109099682	3300031942	Soil	EAADFVMAMGPLMRVLPSLSAEQRENVRTTLEVYFKGHATSQGVVLPATNWVVRARV
Ga0310913_101407071	3300031945	Soil	NLSAAQRENVRATLEVYFRGHAASQGIVLPAEIWVVRARV
Ga0310909_110103322	3300031947	Soil	PLARVLPGLSAAQREKVRENLEVYLKGHTTSEGVVLPAANWVVQARA
Ga0310909_115406352	3300031947	Soil	FVMAMGPLMRVLPSLSAAQRENVRATLEVYFKGHATSQGVVLPVANWVVRARV
Ga0306926_111046012	3300031954	Soil	SAAQHENVRATLEVYFKAHATSQGVVLPAANWVVRARV
Ga0306926_114828742	3300031954	Soil	EAADFVMAMGPLVRVLPSLSAEQRENVRTTLEVYFKGHATSQGVVLPAANWVVRARV
Ga0318530_102048181	3300031959	Soil	AADFVMAMGPLARVLPSLSAAQRDNVRATLEVYFKGHTTSHGVVLPAANWVVRACV
Ga0306922_110287121	3300032001	Soil	AAQRENVRAALEVYFKGHATSQGVVFPAANWVVRALVF
Ga0318569_104788601	3300032010	Soil	PLMRVLPSLSAAQRENVRATLEVYFKGHATSQGVVLPAANWVVRARV
Ga0310911_106234961	3300032035	Soil	QRENVRATLEVYFKGHATSQGVVLPAANWVVRARV
Ga0318549_104553251	3300032041	Soil	LSAAQREKVRQTLEAYFKGHTTPQGVVLPAEIWVVRARV
Ga0318545_100024021	3300032042	Soil	MVMGPLVRVLPSLSAAERANVRATLEVYFRGHTTSQGVVLPAEIWVVR
Ga0318558_101517661	3300032044	Soil	AADRENVRATLAVYFGGHAASQGIVLPAEIWVVRARV
Ga0318506_101907233	3300032052	Soil	MRVLPSLSAAERENVRATLEVYFRGHAAPHGIVLPAEIWVVRARV
Ga0318506_102835221	3300032052	Soil	NLSAAQRENVRAALEVYFKGHATSQGVVLPAANWVVRGRV
Ga0318575_100193573	3300032055	Soil	MVMGPLVRVLPSLSTAQRADVRATLEVYFKGHTTSQGVVLPAEIWVVRARV
Ga0318533_112998452	3300032059	Soil	LSAAQRENVRATLEVYFKGHATSQGVVLPAANWVVRARV
Ga0318533_113099071	3300032059	Soil	DFVMAMGPLMRVLPGLSAAEREDIRATLEVYFKAHATSQGVVLPAEIWVVRARA
Ga0318505_102639421	3300032060	Soil	AAQRDNVRATLEVYFKGHTTSHGVVLPAANWVVRACV
Ga0318505_104506161	3300032060	Soil	FVMAMGPLVRVLPSLSAEQRENVRTTLEVYFKGHATSQGVVLPAANWVVRARV
Ga0318553_104487441	3300032068	Soil	VLPSLSTAQRESVRATLEFYFRGHATSQGVVLPAANWVVRARV
Ga0318553_105919161	3300032068	Soil	SLSVAQRENVRTTLEVYFKGHATSQGVVLPATNWVVRARV
Ga0306924_105184814	3300032076	Soil	MVLGPLARVLPSLSAAQREKVRENLEVYFKGHATSQGVVLSAANWLVQARV
Ga0306924_105499501	3300032076	Soil	MGPLTRVLPSLSATQREKVRETLGTYFKGHTTPQGVVLPAEIWVVRARV
Ga0318525_107023931	3300032089	Soil	GPLMRVLPRLSAAQRENVRATLEVYFKGHTTSQGVILPAANWVARARV
Ga0318518_102448471	3300032090	Soil	GPLMRVLPSLSEVQREKVRATLEAYFKGHTRPQGVILPAEIWVVRARV
Ga0318518_104423562	3300032090	Soil	MGPLMRVLPSLSAAQRENVRATLEVYFKGHATSQGVVLPAANWVVRARV
Ga0318518_104516481	3300032090	Soil	LHSLSEAQRENVRATLEVYFKGHATSEGVVLPAANWVVRARV
Ga0306920_1018904462	3300032261	Soil	LMRVLPSLSAAQRENVRATLEVYFKGHATSQGVVLPVANWVVRARV
Ga0310914_118503541	3300033289	Soil	ALGPLARVLPGISAAQREEVRANLEVYFKGHASSQGVVLPAANWIVRARV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F060390

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences